From 41c76203b83c4b5d9d20e7bbdbe59ef0a4a35f85 Mon Sep 17 00:00:00 2001
From: Yusuke Watanabe <ywatanabe@scitex.ai>
Date: Sat, 6 Jun 2026 22:43:20 +0900
Subject: [PATCH] fix(ci): bundle src/scitex/_sphinx_html/ into wheel
 (PS-121/PS-128)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

PS-121 audits that scitex-cloud can serve per-package docs from the
in-wheel ``src/<pkg>/_sphinx_html/index.html`` bundle. This repo had
no bundle checked in AND ``.gitignore`` actively excluded
``src/*/_sphinx_html/`` — the latter is PS-128, because hatchling's
force-include path requires the directory to be tracked.

Two-part fix:
1. Drop the ``src/*/_sphinx_html/`` line from .gitignore (PS-128).
2. Commit the freshly-built ``_sphinx_html/`` tree under
   ``src/scitex/`` (PS-121). The package directory is ``scitex``,
   not ``scitex_python``.

Built locally with sphinx 9.1.0 + the canonical pinned doc stack
(sphinx-rtd-theme, myst-parser, sphinx-copybutton,
sphinx-autodoc-typehints, plus nbsphinx, matplotlib for gallery).
The ``rtd-sphinx-build-on-ubuntu-latest.yml`` workflow already in
place will keep the bundle refreshed on every push to main/develop
going forward.

Note: bundle is ~60 MB because the docs include the matplotlib
gallery image set; ``.doctrees/`` and ``__intersphinx_cache__/``
intermediates have been stripped to keep the commit size down.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
---
 .gitignore                                    |    4 +-
 src/scitex/_sphinx_html/.buildinfo            |    4 +
 src/scitex/_sphinx_html/.nojekyll             |    0
 src/scitex/_sphinx_html/_modules/index.html   |  766 +++++
 src/scitex/_sphinx_html/_modules/logging.html | 3019 +++++++++++++++++
 .../_sphinx_html/_modules/scitex/cli.html     |  888 +++++
 .../_modules/scitex_app/_files_api.html       |  870 +++++
 .../_sphinx_html/_modules/scitex_app/sdk.html |  815 +++++
 .../_modules/scitex_app/sdk/_protocol.html    |  810 +++++
 .../_modules/scitex_app/sdk/_tree.html        |  821 +++++
 .../_modules/scitex_audit/_runner.html        |  801 +++++
 .../_sphinx_html/_modules/scitex_clew.html    | 1112 ++++++
 .../_modules/scitex_clew/_claim.html          | 1308 +++++++
 .../_modules/scitex_clew/_examples.html       |  775 +++++
 .../_modules/scitex_clew/_hash.html           |  865 +++++
 .../scitex_clew/_observers/_session.html      |  792 +++++
 .../scitex_clew/_register_intermediate.html   |  775 +++++
 .../_modules/scitex_clew/_rerun.html          | 1085 ++++++
 .../_modules/scitex_clew/_stamp.html          | 1096 ++++++
 .../_modules/scitex_compat/_compat.html       |  768 +++++
 .../scitex_config/_PriorityConfig.html        | 1061 ++++++
 .../_modules/scitex_config/_ScitexConfig.html | 1028 ++++++
 .../_modules/scitex_config/_env_loader.html   |  853 +++++
 .../_modules/scitex_config/_paths.html        | 1033 ++++++
 .../scitex_context/_detect_environment.html   |  841 +++++
 .../scitex_context/_get_notebook_path.html    |  959 ++++++
 .../scitex_context/_suppress_output.html      |  714 ++++
 .../_modules/scitex_cv/_draw.html             |  925 +++++
 .../_modules/scitex_cv/_filters.html          |  903 +++++
 .../_sphinx_html/_modules/scitex_cv/_io.html  |  843 +++++
 .../_modules/scitex_cv/_transform.html        |  870 +++++
 .../_modules/scitex_dev/_cli/_utils.html      |  870 +++++
 .../_modules/scitex_dev/_core/decorators.html |  746 ++++
 .../_modules/scitex_dev/_core/errors.html     |  823 +++++
 .../_modules/scitex_dev/_core/imports.html    |  789 +++++
 .../scitex_dev/_core/side_effects.html        |  717 ++++
 .../_modules/scitex_dev/_core/types.html      |  862 +++++
 .../_modules/scitex_dev/_docs/docs.html       | 1108 ++++++
 .../_modules/scitex_dev/_docs/search.html     | 1145 +++++++
 .../scitex_dev/_ecosystem/_mcp/_utils.html    |  838 +++++
 .../_modules/scitex_dev/_release/fix.html     | 1167 +++++++
 .../scitex_dev/_release/versions.html         | 1157 +++++++
 .../_modules/scitex_dev/_sync/_local.html     | 1206 +++++++
 .../_modules/scitex_dev/_sync/_remote.html    | 1028 ++++++
 .../_modules/scitex_dev/_sync/_tags.html      |  780 +++++
 .../_modules/scitex_etc/_grid.html            |  740 ++++
 .../_modules/scitex_etc/_search.html          |  813 +++++
 .../_modules/scitex_etc/wait_key.html         |  736 ++++
 .../_SigMacro_processFigure_S.html            |  805 +++++
 .../scitex_gists/_SigMacro_toBlue.html        |  849 +++++
 .../_modules/scitex_logging/_Tee.html         |  873 +++++
 .../_modules/scitex_logging/_config.html      |  851 +++++
 .../_modules/scitex_logging/_context.html     |  779 +++++
 .../_modules/scitex_logging/_errors.html      | 1286 +++++++
 .../_modules/scitex_logging/_warnings.html    |  968 ++++++
 .../_sphinx_html/_modules/scitex_msword.html  |  989 ++++++
 .../_modules/scitex_msword/comments.html      | 1031 ++++++
 .../_modules/scitex_msword/diff.html          |  955 ++++++
 .../_modules/scitex_msword/highlights.html    |  973 ++++++
 .../_modules/scitex_msword/profiles.html      | 1086 ++++++
 .../_modules/scitex_msword/reader.html        | 1461 ++++++++
 .../_modules/scitex_msword/track_changes.html | 1160 +++++++
 .../_modules/scitex_msword/utils.html         |  986 ++++++
 .../_modules/scitex_msword/writer.html        | 1043 ++++++
 .../_modules/scitex_notebook/_compile.html    |  914 +++++
 .../_modules/scitex_notebook/_convert.html    |  955 ++++++
 .../_modules/scitex_notebook/_parse.html      |  756 +++++
 .../_modules/scitex_notebook/_verify.html     |  802 +++++
 .../_modules/scitex_os/_check_host.html       |  710 ++++
 .../_sphinx_html/_modules/scitex_os/_mv.html  |  726 ++++
 .../_modules/scitex_parallel/_run.html        |  769 +++++
 .../_modules/scitex_path/_clean.html          |  732 ++++
 .../_modules/scitex_path/_find.html           |  776 +++++
 .../scitex_path/_get_module_path.html         |  730 ++++
 .../_modules/scitex_path/_getsize.html        |  711 ++++
 .../_modules/scitex_path/_mk_spath.html       |  721 ++++
 .../_modules/scitex_path/_split.html          |  716 ++++
 .../_modules/scitex_path/_symlink.html        |  990 ++++++
 .../_modules/scitex_path/_this_path.html      |  703 ++++
 .../_modules/scitex_path/_version.html        |  785 +++++
 .../_sphinx_html/_modules/scitex_repro.html   |  751 ++++
 .../scitex_repro/_RandomStateManager.html     | 1316 +++++++
 .../_modules/scitex_repro/_gen_ID.html        |  735 ++++
 .../_modules/scitex_repro/_gen_timestamp.html |  718 ++++
 .../_modules/scitex_repro/_hash_array.html    |  712 ++++
 .../_modules/scitex_resource/_host.html       |  832 +++++
 .../_log_processor_usages.html                |  906 +++++
 .../_modules/scitex_resource/_machine.html    |  747 ++++
 .../scitex_resource/_specs/_metrics.html      |  829 +++++
 .../_specs/_processor_usages.html             |  957 ++++++
 .../scitex_resource/_specs/_specs.html        |  949 ++++++
 .../_modules/scitex_security/github.html      | 1131 ++++++
 .../_sphinx_html/_modules/scitex_ui.html      |  741 ++++
 .../_modules/scitex_ui/_registry.html         |  700 ++++
 .../results/_CompilationResult.html           |  745 ++++
 .../_dataclasses/tree/_ManuscriptTree.html    |  758 +++++
 .../_dataclasses/tree/_RevisionTree.html      |  771 +++++
 .../_dataclasses/tree/_SupplementaryTree.html |  775 +++++
 .../_modules/scitex_writer/writer.html        | 1056 ++++++
 .../_sphinx_html/_sources/api/index.rst.txt   |   33 +
 .../_sources/api/scitex.ai.rst.txt            |    6 +
 .../_sources/api/scitex.clew.rst.txt          |    6 +
 .../_sources/api/scitex.config.rst.txt        |    6 +
 .../_sources/api/scitex.db.rst.txt            |    6 +
 .../_sources/api/scitex.decorators.rst.txt    |    6 +
 .../_sources/api/scitex.diagram.rst.txt       |    6 +
 .../_sources/api/scitex.dict.rst.txt          |    6 +
 .../_sources/api/scitex.dsp.rst.txt           |    6 +
 .../_sources/api/scitex.gen.rst.txt           |    6 +
 .../_sources/api/scitex.introspect.rst.txt    |    6 +
 .../_sources/api/scitex.io.rst.txt            |    6 +
 .../_sources/api/scitex.linter.rst.txt        |    6 +
 .../_sources/api/scitex.logging.rst.txt       |    6 +
 .../_sources/api/scitex.nn.rst.txt            |    6 +
 .../_sources/api/scitex.path.rst.txt          |    6 +
 .../_sources/api/scitex.pd.rst.txt            |    6 +
 .../_sources/api/scitex.plt.rst.txt           |   12 +
 .../_sources/api/scitex.repro.rst.txt         |    6 +
 .../_sources/api/scitex.scholar.rst.txt       |    6 +
 .../_sources/api/scitex.session.rst.txt       |    8 +
 .../_sources/api/scitex.social.rst.txt        |    6 +
 .../_sources/api/scitex.stats.rst.txt         |    6 +
 .../_sources/api/scitex.str.rst.txt           |    6 +
 .../_sources/api/scitex.template.rst.txt      |    6 +
 .../_sources/api/scitex.writer.rst.txt        |    6 +
 .../_sources/core_concepts.rst.txt            |  181 +
 .../_sphinx_html/_sources/gallery.rst.txt     |  206 ++
 .../_sphinx_html/_sources/index.rst.txt       |   78 +
 .../_sources/installation.rst.txt             |  166 +
 .../_sphinx_html/_sources/modules/ai.rst.txt  |   81 +
 .../_sphinx_html/_sources/modules/app.rst.txt |    4 +
 .../_sources/modules/audio.rst.txt            |    4 +
 .../_sources/modules/audit.rst.txt            |    4 +
 .../_sources/modules/benchmark.rst.txt        |    4 +
 .../_sources/modules/bridge.rst.txt           |    4 +
 .../_sources/modules/browser.rst.txt          |    4 +
 .../_sources/modules/canvas.rst.txt           |    4 +
 .../_sources/modules/capture.rst.txt          |    4 +
 .../_sources/modules/clew.rst.txt             |   93 +
 .../_sphinx_html/_sources/modules/cli.rst.txt |    4 +
 .../_sources/modules/cloud.rst.txt            |    4 +
 .../_sources/modules/compat.rst.txt           |    4 +
 .../_sources/modules/config.rst.txt           |   87 +
 .../_sources/modules/container.rst.txt        |    4 +
 .../_sources/modules/context.rst.txt          |    4 +
 .../_sphinx_html/_sources/modules/cv.rst.txt  |    4 +
 .../_sources/modules/dataset.rst.txt          |    4 +
 .../_sources/modules/datetime.rst.txt         |    4 +
 .../_sphinx_html/_sources/modules/db.rst.txt  |    4 +
 .../_sources/modules/decorators.rst.txt       |   79 +
 .../_sphinx_html/_sources/modules/dev.rst.txt |    4 +
 .../_sources/modules/diagram.rst.txt          |   98 +
 .../_sources/modules/dict.rst.txt             |    4 +
 .../_sphinx_html/_sources/modules/dsp.rst.txt |   74 +
 .../_sphinx_html/_sources/modules/etc.rst.txt |    4 +
 .../_sources/modules/events.rst.txt           |    4 +
 .../_sphinx_html/_sources/modules/gen.rst.txt |   36 +
 .../_sources/modules/gists.rst.txt            |    4 +
 .../_sphinx_html/_sources/modules/git.rst.txt |    4 +
 .../_sources/modules/index.rst.txt            |  111 +
 .../_sources/modules/introspect.rst.txt       |   70 +
 .../_sphinx_html/_sources/modules/io.rst.txt  |  115 +
 .../_sources/modules/linalg.rst.txt           |    4 +
 .../_sources/modules/linter.rst.txt           |  131 +
 .../_sources/modules/logging.rst.txt          |  107 +
 .../_sources/modules/media.rst.txt            |    4 +
 .../_sources/modules/module.rst.txt           |    4 +
 .../_sources/modules/msword.rst.txt           |    4 +
 .../_sphinx_html/_sources/modules/nn.rst.txt  |   79 +
 .../_sources/modules/notebook.rst.txt         |    4 +
 .../_sources/modules/notify.rst.txt           |    4 +
 .../_sphinx_html/_sources/modules/os.rst.txt  |    4 +
 .../_sources/modules/parallel.rst.txt         |    4 +
 .../_sources/modules/path.rst.txt             |    4 +
 .../_sphinx_html/_sources/modules/pd.rst.txt  |   45 +
 .../_sphinx_html/_sources/modules/plt.rst.txt |  161 +
 .../_sources/modules/project.rst.txt          |    4 +
 .../_sources/modules/repro.rst.txt            |   70 +
 .../_sources/modules/resource.rst.txt         |    4 +
 .../_sphinx_html/_sources/modules/rng.rst.txt |    4 +
 .../_sources/modules/schema.rst.txt           |    4 +
 .../_sources/modules/scholar.rst.txt          |  131 +
 .../_sources/modules/security.rst.txt         |    4 +
 .../_sources/modules/session.rst.txt          |  210 ++
 .../_sphinx_html/_sources/modules/sh.rst.txt  |    4 +
 .../_sources/modules/social.rst.txt           |    4 +
 .../_sources/modules/stats.rst.txt            |  152 +
 .../_sphinx_html/_sources/modules/str.rst.txt |    4 +
 .../_sources/modules/template.rst.txt         |   85 +
 .../_sphinx_html/_sources/modules/tex.rst.txt |    4 +
 .../_sources/modules/torch.rst.txt            |    4 +
 .../_sources/modules/tunnel.rst.txt           |    4 +
 .../_sources/modules/types.rst.txt            |    4 +
 .../_sphinx_html/_sources/modules/ui.rst.txt  |    4 +
 .../_sources/modules/utils.rst.txt            |    4 +
 .../_sphinx_html/_sources/modules/web.rst.txt |    4 +
 .../_sources/modules/writer.rst.txt           |  164 +
 .../_sphinx_html/_sources/quickstart.rst.txt  |  231 ++
 .../_sources/source/api/ai.rst.txt            |   82 +
 .../_sources/source/api/app.rst.txt           |  101 +
 .../_sources/source/api/audio.rst.txt         |   78 +
 .../_sources/source/api/audit.rst.txt         |    7 +
 .../_sources/source/api/benchmark.rst.txt     |    7 +
 .../_sources/source/api/bridge.rst.txt        |    7 +
 .../_sources/source/api/browser.rst.txt       |    7 +
 .../_sources/source/api/canvas.rst.txt        |    7 +
 .../_sources/source/api/capture.rst.txt       |   81 +
 .../_sources/source/api/clew.rst.txt          |   94 +
 .../_sources/source/api/cli.rst.txt           |    7 +
 .../_sources/source/api/cloud.rst.txt         |  123 +
 .../_sources/source/api/compat.rst.txt        |    7 +
 .../_sources/source/api/config.rst.txt        |   88 +
 .../_sources/source/api/container.rst.txt     |    7 +
 .../_sources/source/api/context.rst.txt       |    7 +
 .../_sources/source/api/cv.rst.txt            |    7 +
 .../_sources/source/api/dataset.rst.txt       |  125 +
 .../_sources/source/api/datetime.rst.txt      |    7 +
 .../_sources/source/api/db.rst.txt            |    7 +
 .../_sources/source/api/decorators.rst.txt    |   80 +
 .../_sources/source/api/dev.rst.txt           |  163 +
 .../_sources/source/api/diagram.rst.txt       |   99 +
 .../_sources/source/api/dict.rst.txt          |    7 +
 .../_sources/source/api/dsp.rst.txt           |   75 +
 .../_sources/source/api/etc.rst.txt           |    7 +
 .../_sources/source/api/events.rst.txt        |    7 +
 .../_sources/source/api/gen.rst.txt           |   38 +
 .../_sources/source/api/gists.rst.txt         |    7 +
 .../_sources/source/api/git.rst.txt           |    7 +
 .../_sources/source/api/index.rst.txt         |  118 +
 .../_sources/source/api/introspect.rst.txt    |   71 +
 .../_sources/source/api/io.rst.txt            |  181 +
 .../_sources/source/api/linalg.rst.txt        |    7 +
 .../_sources/source/api/linter.rst.txt        |  191 ++
 .../_sources/source/api/logging.rst.txt       |  108 +
 .../_sources/source/api/media.rst.txt         |    7 +
 .../_sources/source/api/module.rst.txt        |    7 +
 .../_sources/source/api/msword.rst.txt        |    7 +
 .../_sources/source/api/nn.rst.txt            |   80 +
 .../_sources/source/api/notebook.rst.txt      |    7 +
 .../_sources/source/api/notification.rst.txt  |  134 +
 .../_sources/source/api/os.rst.txt            |    7 +
 .../_sources/source/api/parallel.rst.txt      |    7 +
 .../_sources/source/api/path.rst.txt          |    7 +
 .../_sources/source/api/pd.rst.txt            |   46 +
 .../_sources/source/api/plt.rst.txt           |  243 ++
 .../_sources/source/api/project.rst.txt       |    7 +
 .../_sources/source/api/repro.rst.txt         |   71 +
 .../_sources/source/api/resource.rst.txt      |    7 +
 .../_sources/source/api/rng.rst.txt           |    7 +
 .../_sources/source/api/schema.rst.txt        |    7 +
 .../_sources/source/api/scholar.rst.txt       |  133 +
 .../_sources/source/api/security.rst.txt      |    7 +
 .../_sources/source/api/session.rst.txt       |  213 ++
 .../_sources/source/api/sh.rst.txt            |    7 +
 .../_sources/source/api/social.rst.txt        |    7 +
 .../_sources/source/api/stats.rst.txt         |  153 +
 .../_sources/source/api/str.rst.txt           |    7 +
 .../_sources/source/api/template.rst.txt      |  144 +
 .../_sources/source/api/tex.rst.txt           |    7 +
 .../_sources/source/api/torch.rst.txt         |    7 +
 .../_sources/source/api/tunnel.rst.txt        |    7 +
 .../_sources/source/api/types.rst.txt         |    7 +
 .../_sources/source/api/ui.rst.txt            |    7 +
 .../_sources/source/api/utils.rst.txt         |    7 +
 .../_sources/source/api/web.rst.txt           |    7 +
 .../_sources/source/api/writer.rst.txt        |  166 +
 .../_sphinx_html/_sources/source/cli.rst.txt  |   98 +
 .../_sources/source/concepts.rst.txt          |  267 ++
 .../_sources/source/ecosystem.rst.txt         |  123 +
 .../_sources/source/gallery.rst.txt           |  206 ++
 .../_sources/source/index.rst.txt             |   88 +
 .../_sources/source/installation.rst.txt      |  166 +
 .../_sphinx_html/_sources/source/mcp.rst.txt  |  152 +
 .../_sources/source/quickstart.rst.txt        |  287 ++
 .../_sphinx_javascript_frameworks_compat.js   |  123 +
 .../_sphinx_html/_static/architecture.mmd     |   35 +
 .../_sphinx_html/_static/base-stemmer.js      |  476 +++
 src/scitex/_sphinx_html/_static/basic.css     |  906 +++++
 .../_sphinx_html/_static/check-solid.svg      |    4 +
 .../_sphinx_html/_static/clipboard.min.js     |    7 +
 .../_sphinx_html/_static/copy-button.svg      |    5 +
 .../_sphinx_html/_static/copybutton.css       |   94 +
 src/scitex/_sphinx_html/_static/copybutton.js |  248 ++
 .../_sphinx_html/_static/copybutton_funcs.js  |   73 +
 .../_sphinx_html/_static/css/badge_only.css   |    1 +
 .../css/fonts/Roboto-Slab-Regular.woff        |  Bin 0 -> 86288 bytes
 .../css/fonts/Roboto-Slab-Regular.woff2       |  Bin 0 -> 66444 bytes
 .../_static/css/fonts/fontawesome-webfont.eot |  Bin 0 -> 165742 bytes
 .../_static/css/fonts/fontawesome-webfont.svg | 2671 +++++++++++++++
 .../_static/css/fonts/fontawesome-webfont.ttf |  Bin 0 -> 165548 bytes
 .../css/fonts/fontawesome-webfont.woff        |  Bin 0 -> 98024 bytes
 .../css/fonts/fontawesome-webfont.woff2       |  Bin 0 -> 77160 bytes
 .../_static/css/fonts/lato-normal-italic.woff |  Bin 0 -> 328412 bytes
 .../css/fonts/lato-normal-italic.woff2        |  Bin 0 -> 195704 bytes
 .../_static/css/fonts/lato-normal.woff        |  Bin 0 -> 309192 bytes
 .../_static/css/fonts/lato-normal.woff2       |  Bin 0 -> 182708 bytes
 src/scitex/_sphinx_html/_static/css/theme.css |    4 +
 src/scitex/_sphinx_html/_static/doctools.js   |  150 +
 .../_static/documentation_options.js          |   13 +
 .../_sphinx_html/_static/english-stemmer.js   | 1066 ++++++
 .../_static/fonts/Lato/lato-italic.eot        |  Bin 0 -> 268604 bytes
 .../_static/fonts/Lato/lato-italic.ttf        |  Bin 0 -> 639388 bytes
 .../_static/fonts/Lato/lato-italic.woff       |  Bin 0 -> 328412 bytes
 .../_static/fonts/Lato/lato-italic.woff2      |  Bin 0 -> 195704 bytes
 .../_static/fonts/Lato/lato-regular.eot       |  Bin 0 -> 253461 bytes
 .../_static/fonts/Lato/lato-regular.ttf       |  Bin 0 -> 607720 bytes
 .../_static/fonts/Lato/lato-regular.woff      |  Bin 0 -> 309192 bytes
 .../_static/fonts/Lato/lato-regular.woff2     |  Bin 0 -> 182708 bytes
 .../RobotoSlab/roboto-slab-v7-regular.eot     |  Bin 0 -> 78331 bytes
 .../RobotoSlab/roboto-slab-v7-regular.ttf     |  Bin 0 -> 169064 bytes
 .../RobotoSlab/roboto-slab-v7-regular.woff    |  Bin 0 -> 86288 bytes
 .../RobotoSlab/roboto-slab-v7-regular.woff2   |  Bin 0 -> 66444 bytes
 .../_static/gallery/area/fill_between.json    |  131 +
 .../_static/gallery/area/fill_betweenx.json   |  117 +
 .../gallery/area/stx_fill_between.json        |  131 +
 .../_static/gallery/area/stx_fillv.json       |  131 +
 .../_static/gallery/categorical/bar.json      |  119 +
 .../_static/gallery/categorical/barh.json     |  119 +
 .../_static/gallery/categorical/boxplot.json  |  307 ++
 .../_static/gallery/categorical/stx_bar.json  |  119 +
 .../_static/gallery/categorical/stx_barh.json |  119 +
 .../_static/gallery/categorical/stx_box.json  |  369 ++
 .../gallery/categorical/stx_boxplot.json      |  369 ++
 .../gallery/categorical/stx_violin.json       |  217 ++
 .../gallery/categorical/stx_violinplot.json   |  217 ++
 .../gallery/categorical/violinplot.json       |  369 ++
 .../_static/gallery/contour/contour.json      |  119 +
 .../_static/gallery/contour/contourf.json     |  119 +
 .../_static/gallery/contour/stx_contour.json  |  119 +
 .../_static/gallery/distribution/hist.json    |  119 +
 .../_static/gallery/distribution/hist2d.json  |  117 +
 .../gallery/distribution/stx_ecdf.json        |  131 +
 .../gallery/distribution/stx_joyplot.json     |  171 +
 .../_static/gallery/distribution/stx_kde.json |  131 +
 .../_static/gallery/grid/imshow.json          |  119 +
 .../_static/gallery/grid/matshow.json         |  119 +
 .../_static/gallery/grid/stx_conf_mat.json    |  117 +
 .../_static/gallery/grid/stx_heatmap.json     |  119 +
 .../_static/gallery/grid/stx_image.json       |  119 +
 .../_static/gallery/grid/stx_imshow.json      |  119 +
 .../_static/gallery/line/plot.json            |  152 +
 .../_static/gallery/line/step.json            |  131 +
 .../_static/gallery/line/stx_line.json        |  140 +
 .../_static/gallery/line/stx_shaded_line.json |  131 +
 .../_static/gallery/scatter/hexbin.json       |  117 +
 .../_static/gallery/scatter/scatter.json      |  119 +
 .../_static/gallery/scatter/stem.json         |  143 +
 .../_static/gallery/scatter/stx_scatter.json  |  119 +
 .../_static/gallery/special/pie.json          |  117 +
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 create mode 100644 src/scitex/_sphinx_html/api/scitex.db.html
 create mode 100644 src/scitex/_sphinx_html/api/scitex.decorators.html
 create mode 100644 src/scitex/_sphinx_html/api/scitex.diagram.html
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 create mode 100644 src/scitex/_sphinx_html/modules/cli.html
 create mode 100644 src/scitex/_sphinx_html/modules/cloud.html
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 create mode 100644 src/scitex/_sphinx_html/modules/container.html
 create mode 100644 src/scitex/_sphinx_html/modules/context.html
 create mode 100644 src/scitex/_sphinx_html/modules/cv.html
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 create mode 100644 src/scitex/_sphinx_html/modules/etc.html
 create mode 100644 src/scitex/_sphinx_html/modules/events.html
 create mode 100644 src/scitex/_sphinx_html/modules/gen.html
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 create mode 100644 src/scitex/_sphinx_html/modules/git.html
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 create mode 100644 src/scitex/_sphinx_html/modules/io.html
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 create mode 100644 src/scitex/_sphinx_html/modules/project.html
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 create mode 100644 src/scitex/_sphinx_html/modules/session.html
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 create mode 100644 src/scitex/_sphinx_html/modules/social.html
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 create mode 100644 src/scitex/_sphinx_html/modules/str.html
 create mode 100644 src/scitex/_sphinx_html/modules/template.html
 create mode 100644 src/scitex/_sphinx_html/modules/tex.html
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 create mode 100644 src/scitex/_sphinx_html/modules/types.html
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 create mode 100644 src/scitex/_sphinx_html/source/api/decorators.html
 create mode 100644 src/scitex/_sphinx_html/source/api/dev.html
 create mode 100644 src/scitex/_sphinx_html/source/api/diagram.html
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 create mode 100644 src/scitex/_sphinx_html/source/api/gen.html
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 create mode 100644 src/scitex/_sphinx_html/source/api/introspect.html
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 create mode 100644 src/scitex/_sphinx_html/source/api/module.html
 create mode 100644 src/scitex/_sphinx_html/source/api/msword.html
 create mode 100644 src/scitex/_sphinx_html/source/api/nn.html
 create mode 100644 src/scitex/_sphinx_html/source/api/notebook.html
 create mode 100644 src/scitex/_sphinx_html/source/api/notification.html
 create mode 100644 src/scitex/_sphinx_html/source/api/os.html
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 create mode 100644 src/scitex/_sphinx_html/source/api/plt.html
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 create mode 100644 src/scitex/_sphinx_html/source/api/repro.html
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 create mode 100644 src/scitex/_sphinx_html/source/api/rng.html
 create mode 100644 src/scitex/_sphinx_html/source/api/schema.html
 create mode 100644 src/scitex/_sphinx_html/source/api/scholar.html
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 create mode 100644 src/scitex/_sphinx_html/source/api/writer.html
 create mode 100644 src/scitex/_sphinx_html/source/cli.html
 create mode 100644 src/scitex/_sphinx_html/source/concepts.html
 create mode 100644 src/scitex/_sphinx_html/source/ecosystem.html
 create mode 100644 src/scitex/_sphinx_html/source/gallery.html
 create mode 100644 src/scitex/_sphinx_html/source/index.html
 create mode 100644 src/scitex/_sphinx_html/source/installation.html
 create mode 100644 src/scitex/_sphinx_html/source/mcp.html
 create mode 100644 src/scitex/_sphinx_html/source/quickstart.html

diff --git a/.gitignore b/.gitignore
index 8c7536034..fd94b9ba4 100755
--- a/.gitignore
+++ b/.gitignore
@@ -944,8 +944,8 @@ MEMO.md
 CLAUDE.md
 docs/sphinx/_build/
 
-# Pre-built docs (generated by sphinx-build)
-src/*/_sphinx_html/
+# PS-128: do NOT ignore src/<pkg>/_sphinx_html/ — scitex-cloud serves
+# in-wheel docs from that path, so the bundle must be tracked.
 .playwright-cli/
 .venv/
 # Claude worktree symlink
diff --git a/src/scitex/_sphinx_html/.buildinfo b/src/scitex/_sphinx_html/.buildinfo
new file mode 100644
index 000000000..bac671ae1
--- /dev/null
+++ b/src/scitex/_sphinx_html/.buildinfo
@@ -0,0 +1,4 @@
+# Sphinx build info version 1
+# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 7dc761b96e0d37a6fb81bc449771db72
+tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/src/scitex/_sphinx_html/.nojekyll b/src/scitex/_sphinx_html/.nojekyll
new file mode 100644
index 000000000..e69de29bb
diff --git a/src/scitex/_sphinx_html/_modules/index.html b/src/scitex/_sphinx_html/_modules/index.html
new file mode 100644
index 000000000..dd83ddd72
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/index.html
@@ -0,0 +1,766 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Overview: module code &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Overview: module code</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>All modules for which code is available</h1>
+<ul><li><a href="logging.html">logging</a></li>
+<li><a href="scitex/cli.html">scitex.cli</a></li>
+<li><a href="scitex_app/_files_api.html">scitex_app._files_api</a></li>
+<li><a href="scitex_app/sdk.html">scitex_app.sdk</a></li>
+<ul><li><a href="scitex_app/sdk/_protocol.html">scitex_app.sdk._protocol</a></li>
+<li><a href="scitex_app/sdk/_tree.html">scitex_app.sdk._tree</a></li>
+</ul><li><a href="scitex_audit/_runner.html">scitex_audit._runner</a></li>
+<li><a href="scitex_clew.html">scitex_clew</a></li>
+<ul><li><a href="scitex_clew/_claim.html">scitex_clew._claim</a></li>
+<li><a href="scitex_clew/_examples.html">scitex_clew._examples</a></li>
+<li><a href="scitex_clew/_hash.html">scitex_clew._hash</a></li>
+<li><a href="scitex_clew/_observers/_session.html">scitex_clew._observers._session</a></li>
+<li><a href="scitex_clew/_register_intermediate.html">scitex_clew._register_intermediate</a></li>
+<li><a href="scitex_clew/_rerun.html">scitex_clew._rerun</a></li>
+<li><a href="scitex_clew/_stamp.html">scitex_clew._stamp</a></li>
+</ul><li><a href="scitex_compat/_compat.html">scitex_compat._compat</a></li>
+<li><a href="scitex_config/_PriorityConfig.html">scitex_config._PriorityConfig</a></li>
+<li><a href="scitex_config/_ScitexConfig.html">scitex_config._ScitexConfig</a></li>
+<li><a href="scitex_config/_env_loader.html">scitex_config._env_loader</a></li>
+<li><a href="scitex_config/_paths.html">scitex_config._paths</a></li>
+<li><a href="scitex_context/_detect_environment.html">scitex_context._detect_environment</a></li>
+<li><a href="scitex_context/_get_notebook_path.html">scitex_context._get_notebook_path</a></li>
+<li><a href="scitex_context/_suppress_output.html">scitex_context._suppress_output</a></li>
+<li><a href="scitex_cv/_draw.html">scitex_cv._draw</a></li>
+<li><a href="scitex_cv/_filters.html">scitex_cv._filters</a></li>
+<li><a href="scitex_cv/_io.html">scitex_cv._io</a></li>
+<li><a href="scitex_cv/_transform.html">scitex_cv._transform</a></li>
+<li><a href="scitex_dev/_cli/_utils.html">scitex_dev._cli._utils</a></li>
+<li><a href="scitex_dev/_core/decorators.html">scitex_dev._core.decorators</a></li>
+<li><a href="scitex_dev/_core/errors.html">scitex_dev._core.errors</a></li>
+<li><a href="scitex_dev/_core/imports.html">scitex_dev._core.imports</a></li>
+<li><a href="scitex_dev/_core/side_effects.html">scitex_dev._core.side_effects</a></li>
+<li><a href="scitex_dev/_core/types.html">scitex_dev._core.types</a></li>
+<li><a href="scitex_dev/_docs/docs.html">scitex_dev._docs.docs</a></li>
+<li><a href="scitex_dev/_docs/search.html">scitex_dev._docs.search</a></li>
+<li><a href="scitex_dev/_ecosystem/_mcp/_utils.html">scitex_dev._ecosystem._mcp._utils</a></li>
+<li><a href="scitex_dev/_release/fix.html">scitex_dev._release.fix</a></li>
+<li><a href="scitex_dev/_release/versions.html">scitex_dev._release.versions</a></li>
+<li><a href="scitex_dev/_sync/_local.html">scitex_dev._sync._local</a></li>
+<li><a href="scitex_dev/_sync/_remote.html">scitex_dev._sync._remote</a></li>
+<li><a href="scitex_dev/_sync/_tags.html">scitex_dev._sync._tags</a></li>
+<li><a href="scitex_etc/_grid.html">scitex_etc._grid</a></li>
+<li><a href="scitex_etc/_search.html">scitex_etc._search</a></li>
+<li><a href="scitex_etc/wait_key.html">scitex_etc.wait_key</a></li>
+<li><a href="scitex_gists/_SigMacro_processFigure_S.html">scitex_gists._SigMacro_processFigure_S</a></li>
+<li><a href="scitex_gists/_SigMacro_toBlue.html">scitex_gists._SigMacro_toBlue</a></li>
+<li><a href="scitex_logging/_Tee.html">scitex_logging._Tee</a></li>
+<li><a href="scitex_logging/_config.html">scitex_logging._config</a></li>
+<li><a href="scitex_logging/_context.html">scitex_logging._context</a></li>
+<li><a href="scitex_logging/_errors.html">scitex_logging._errors</a></li>
+<li><a href="scitex_logging/_warnings.html">scitex_logging._warnings</a></li>
+<li><a href="scitex_msword.html">scitex_msword</a></li>
+<ul><li><a href="scitex_msword/bold.html">scitex_msword.bold</a></li>
+<li><a href="scitex_msword/comments.html">scitex_msword.comments</a></li>
+<li><a href="scitex_msword/diff.html">scitex_msword.diff</a></li>
+<li><a href="scitex_msword/highlights.html">scitex_msword.highlights</a></li>
+<li><a href="scitex_msword/profiles.html">scitex_msword.profiles</a></li>
+<li><a href="scitex_msword/reader.html">scitex_msword.reader</a></li>
+<li><a href="scitex_msword/track_changes.html">scitex_msword.track_changes</a></li>
+<li><a href="scitex_msword/utils.html">scitex_msword.utils</a></li>
+<li><a href="scitex_msword/writer.html">scitex_msword.writer</a></li>
+</ul><li><a href="scitex_notebook/_compile.html">scitex_notebook._compile</a></li>
+<li><a href="scitex_notebook/_convert.html">scitex_notebook._convert</a></li>
+<li><a href="scitex_notebook/_parse.html">scitex_notebook._parse</a></li>
+<li><a href="scitex_notebook/_verify.html">scitex_notebook._verify</a></li>
+<li><a href="scitex_os/_check_host.html">scitex_os._check_host</a></li>
+<li><a href="scitex_os/_mv.html">scitex_os._mv</a></li>
+<li><a href="scitex_parallel/_run.html">scitex_parallel._run</a></li>
+<li><a href="scitex_path/_clean.html">scitex_path._clean</a></li>
+<li><a href="scitex_path/_find.html">scitex_path._find</a></li>
+<li><a href="scitex_path/_get_module_path.html">scitex_path._get_module_path</a></li>
+<li><a href="scitex_path/_getsize.html">scitex_path._getsize</a></li>
+<li><a href="scitex_path/_mk_spath.html">scitex_path._mk_spath</a></li>
+<li><a href="scitex_path/_split.html">scitex_path._split</a></li>
+<li><a href="scitex_path/_symlink.html">scitex_path._symlink</a></li>
+<li><a href="scitex_path/_this_path.html">scitex_path._this_path</a></li>
+<li><a href="scitex_path/_version.html">scitex_path._version</a></li>
+<li><a href="scitex_repro.html">scitex_repro</a></li>
+<ul><li><a href="scitex_repro/_RandomStateManager.html">scitex_repro._RandomStateManager</a></li>
+<li><a href="scitex_repro/_gen_ID.html">scitex_repro._gen_ID</a></li>
+<li><a href="scitex_repro/_gen_timestamp.html">scitex_repro._gen_timestamp</a></li>
+<li><a href="scitex_repro/_hash_array.html">scitex_repro._hash_array</a></li>
+</ul><li><a href="scitex_resource/_host.html">scitex_resource._host</a></li>
+<li><a href="scitex_resource/_log_processor_usages.html">scitex_resource._log_processor_usages</a></li>
+<li><a href="scitex_resource/_machine.html">scitex_resource._machine</a></li>
+<li><a href="scitex_resource/_specs/_metrics.html">scitex_resource._specs._metrics</a></li>
+<li><a href="scitex_resource/_specs/_processor_usages.html">scitex_resource._specs._processor_usages</a></li>
+<li><a href="scitex_resource/_specs/_specs.html">scitex_resource._specs._specs</a></li>
+<li><a href="scitex_security/github.html">scitex_security.github</a></li>
+<li><a href="scitex_ui.html">scitex_ui</a></li>
+<ul><li><a href="scitex_ui/_registry.html">scitex_ui._registry</a></li>
+</ul><li><a href="scitex_writer/_dataclasses/results/_CompilationResult.html">scitex_writer._dataclasses.results._CompilationResult</a></li>
+<li><a href="scitex_writer/_dataclasses/tree/_ManuscriptTree.html">scitex_writer._dataclasses.tree._ManuscriptTree</a></li>
+<li><a href="scitex_writer/_dataclasses/tree/_RevisionTree.html">scitex_writer._dataclasses.tree._RevisionTree</a></li>
+<li><a href="scitex_writer/_dataclasses/tree/_SupplementaryTree.html">scitex_writer._dataclasses.tree._SupplementaryTree</a></li>
+<li><a href="scitex_writer/writer.html">scitex_writer.writer</a></li>
+</ul>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/logging.html b/src/scitex/_sphinx_html/_modules/logging.html
new file mode 100644
index 000000000..86f6ad092
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/logging.html
@@ -0,0 +1,3019 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>logging &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module code</a></li>
+      <li class="breadcrumb-item active">logging</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for logging</h1><div class="highlight"><pre>
+<span></span><span class="c1"># Copyright 2001-2022 by Vinay Sajip. All Rights Reserved.</span>
+<span class="c1">#</span>
+<span class="c1"># Permission to use, copy, modify, and distribute this software and its</span>
+<span class="c1"># documentation for any purpose and without fee is hereby granted,</span>
+<span class="c1"># provided that the above copyright notice appear in all copies and that</span>
+<span class="c1"># both that copyright notice and this permission notice appear in</span>
+<span class="c1"># supporting documentation, and that the name of Vinay Sajip</span>
+<span class="c1"># not be used in advertising or publicity pertaining to distribution</span>
+<span class="c1"># of the software without specific, written prior permission.</span>
+<span class="c1"># VINAY SAJIP DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING</span>
+<span class="c1"># ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL</span>
+<span class="c1"># VINAY SAJIP BE LIABLE FOR ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR</span>
+<span class="c1"># ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER</span>
+<span class="c1"># IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT</span>
+<span class="c1"># OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Logging package for Python. Based on PEP 282 and comments thereto in</span>
+<span class="sd">comp.lang.python.</span>
+
+<span class="sd">Copyright (C) 2001-2022 Vinay Sajip. All Rights Reserved.</span>
+
+<span class="sd">To use, simply &#39;import logging&#39; and log away!</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span><span class="o">,</span><span class="w"> </span><span class="nn">os</span><span class="o">,</span><span class="w"> </span><span class="nn">time</span><span class="o">,</span><span class="w"> </span><span class="nn">io</span><span class="o">,</span><span class="w"> </span><span class="nn">re</span><span class="o">,</span><span class="w"> </span><span class="nn">traceback</span><span class="o">,</span><span class="w"> </span><span class="nn">warnings</span><span class="o">,</span><span class="w"> </span><span class="nn">weakref</span><span class="o">,</span><span class="w"> </span><span class="nn">collections.abc</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">types</span><span class="w"> </span><span class="kn">import</span> <span class="n">GenericAlias</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">string</span><span class="w"> </span><span class="kn">import</span> <span class="n">Template</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">string</span><span class="w"> </span><span class="kn">import</span> <span class="n">Formatter</span> <span class="k">as</span> <span class="n">StrFormatter</span>
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;BASIC_FORMAT&#39;</span><span class="p">,</span> <span class="s1">&#39;BufferingFormatter&#39;</span><span class="p">,</span> <span class="s1">&#39;CRITICAL&#39;</span><span class="p">,</span> <span class="s1">&#39;DEBUG&#39;</span><span class="p">,</span> <span class="s1">&#39;ERROR&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;FATAL&#39;</span><span class="p">,</span> <span class="s1">&#39;FileHandler&#39;</span><span class="p">,</span> <span class="s1">&#39;Filter&#39;</span><span class="p">,</span> <span class="s1">&#39;Formatter&#39;</span><span class="p">,</span> <span class="s1">&#39;Handler&#39;</span><span class="p">,</span> <span class="s1">&#39;INFO&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;LogRecord&#39;</span><span class="p">,</span> <span class="s1">&#39;Logger&#39;</span><span class="p">,</span> <span class="s1">&#39;LoggerAdapter&#39;</span><span class="p">,</span> <span class="s1">&#39;NOTSET&#39;</span><span class="p">,</span> <span class="s1">&#39;NullHandler&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;StreamHandler&#39;</span><span class="p">,</span> <span class="s1">&#39;WARN&#39;</span><span class="p">,</span> <span class="s1">&#39;WARNING&#39;</span><span class="p">,</span> <span class="s1">&#39;addLevelName&#39;</span><span class="p">,</span> <span class="s1">&#39;basicConfig&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;captureWarnings&#39;</span><span class="p">,</span> <span class="s1">&#39;critical&#39;</span><span class="p">,</span> <span class="s1">&#39;debug&#39;</span><span class="p">,</span> <span class="s1">&#39;disable&#39;</span><span class="p">,</span> <span class="s1">&#39;error&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;exception&#39;</span><span class="p">,</span> <span class="s1">&#39;fatal&#39;</span><span class="p">,</span> <span class="s1">&#39;getLevelName&#39;</span><span class="p">,</span> <span class="s1">&#39;getLogger&#39;</span><span class="p">,</span> <span class="s1">&#39;getLoggerClass&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;info&#39;</span><span class="p">,</span> <span class="s1">&#39;log&#39;</span><span class="p">,</span> <span class="s1">&#39;makeLogRecord&#39;</span><span class="p">,</span> <span class="s1">&#39;setLoggerClass&#39;</span><span class="p">,</span> <span class="s1">&#39;shutdown&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;warn&#39;</span><span class="p">,</span> <span class="s1">&#39;warning&#39;</span><span class="p">,</span> <span class="s1">&#39;getLogRecordFactory&#39;</span><span class="p">,</span> <span class="s1">&#39;setLogRecordFactory&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;lastResort&#39;</span><span class="p">,</span> <span class="s1">&#39;raiseExceptions&#39;</span><span class="p">,</span> <span class="s1">&#39;getLevelNamesMapping&#39;</span><span class="p">,</span>
+           <span class="s1">&#39;getHandlerByName&#39;</span><span class="p">,</span> <span class="s1">&#39;getHandlerNames&#39;</span><span class="p">]</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">threading</span>
+
+<span class="n">__author__</span>  <span class="o">=</span> <span class="s2">&quot;Vinay Sajip &lt;vinay_sajip@red-dove.com&gt;&quot;</span>
+<span class="n">__status__</span>  <span class="o">=</span> <span class="s2">&quot;production&quot;</span>
+<span class="c1"># The following module attributes are no longer updated.</span>
+<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.5.1.2&quot;</span>
+<span class="n">__date__</span>    <span class="o">=</span> <span class="s2">&quot;07 February 2010&quot;</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   Miscellaneous module data</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<span class="c1">#</span>
+<span class="c1">#_startTime is used as the base when calculating the relative time of events</span>
+<span class="c1">#</span>
+<span class="n">_startTime</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">time</span><span class="p">()</span>
+
+<span class="c1">#</span>
+<span class="c1">#raiseExceptions is used to see if exceptions during handling should be</span>
+<span class="c1">#propagated</span>
+<span class="c1">#</span>
+<span class="n">raiseExceptions</span> <span class="o">=</span> <span class="kc">True</span>
+
+<span class="c1">#</span>
+<span class="c1"># If you don&#39;t want threading information in the log, set this to False</span>
+<span class="c1">#</span>
+<span class="n">logThreads</span> <span class="o">=</span> <span class="kc">True</span>
+
+<span class="c1">#</span>
+<span class="c1"># If you don&#39;t want multiprocessing information in the log, set this to False</span>
+<span class="c1">#</span>
+<span class="n">logMultiprocessing</span> <span class="o">=</span> <span class="kc">True</span>
+
+<span class="c1">#</span>
+<span class="c1"># If you don&#39;t want process information in the log, set this to False</span>
+<span class="c1">#</span>
+<span class="n">logProcesses</span> <span class="o">=</span> <span class="kc">True</span>
+
+<span class="c1">#</span>
+<span class="c1"># If you don&#39;t want asyncio task information in the log, set this to False</span>
+<span class="c1">#</span>
+<span class="n">logAsyncioTasks</span> <span class="o">=</span> <span class="kc">True</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   Level related stuff</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#</span>
+<span class="c1"># Default levels and level names, these can be replaced with any positive set</span>
+<span class="c1"># of values having corresponding names. There is a pseudo-level, NOTSET, which</span>
+<span class="c1"># is only really there as a lower limit for user-defined levels. Handlers and</span>
+<span class="c1"># loggers are initialized with NOTSET so that they will log all messages, even</span>
+<span class="c1"># at user-defined levels.</span>
+<span class="c1">#</span>
+
+<span class="n">CRITICAL</span> <span class="o">=</span> <span class="mi">50</span>
+<span class="n">FATAL</span> <span class="o">=</span> <span class="n">CRITICAL</span>
+<span class="n">ERROR</span> <span class="o">=</span> <span class="mi">40</span>
+<span class="n">WARNING</span> <span class="o">=</span> <span class="mi">30</span>
+<span class="n">WARN</span> <span class="o">=</span> <span class="n">WARNING</span>
+<span class="n">INFO</span> <span class="o">=</span> <span class="mi">20</span>
+<span class="n">DEBUG</span> <span class="o">=</span> <span class="mi">10</span>
+<span class="n">NOTSET</span> <span class="o">=</span> <span class="mi">0</span>
+
+<span class="n">_levelToName</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="n">CRITICAL</span><span class="p">:</span> <span class="s1">&#39;CRITICAL&#39;</span><span class="p">,</span>
+    <span class="n">ERROR</span><span class="p">:</span> <span class="s1">&#39;ERROR&#39;</span><span class="p">,</span>
+    <span class="n">WARNING</span><span class="p">:</span> <span class="s1">&#39;WARNING&#39;</span><span class="p">,</span>
+    <span class="n">INFO</span><span class="p">:</span> <span class="s1">&#39;INFO&#39;</span><span class="p">,</span>
+    <span class="n">DEBUG</span><span class="p">:</span> <span class="s1">&#39;DEBUG&#39;</span><span class="p">,</span>
+    <span class="n">NOTSET</span><span class="p">:</span> <span class="s1">&#39;NOTSET&#39;</span><span class="p">,</span>
+<span class="p">}</span>
+<span class="n">_nameToLevel</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="s1">&#39;CRITICAL&#39;</span><span class="p">:</span> <span class="n">CRITICAL</span><span class="p">,</span>
+    <span class="s1">&#39;FATAL&#39;</span><span class="p">:</span> <span class="n">FATAL</span><span class="p">,</span>
+    <span class="s1">&#39;ERROR&#39;</span><span class="p">:</span> <span class="n">ERROR</span><span class="p">,</span>
+    <span class="s1">&#39;WARN&#39;</span><span class="p">:</span> <span class="n">WARNING</span><span class="p">,</span>
+    <span class="s1">&#39;WARNING&#39;</span><span class="p">:</span> <span class="n">WARNING</span><span class="p">,</span>
+    <span class="s1">&#39;INFO&#39;</span><span class="p">:</span> <span class="n">INFO</span><span class="p">,</span>
+    <span class="s1">&#39;DEBUG&#39;</span><span class="p">:</span> <span class="n">DEBUG</span><span class="p">,</span>
+    <span class="s1">&#39;NOTSET&#39;</span><span class="p">:</span> <span class="n">NOTSET</span><span class="p">,</span>
+<span class="p">}</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">getLevelNamesMapping</span><span class="p">():</span>
+    <span class="k">return</span> <span class="n">_nameToLevel</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">getLevelName</span><span class="p">(</span><span class="n">level</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Return the textual or numeric representation of logging level &#39;level&#39;.</span>
+
+<span class="sd">    If the level is one of the predefined levels (CRITICAL, ERROR, WARNING,</span>
+<span class="sd">    INFO, DEBUG) then you get the corresponding string. If you have</span>
+<span class="sd">    associated levels with names using addLevelName then the name you have</span>
+<span class="sd">    associated with &#39;level&#39; is returned.</span>
+
+<span class="sd">    If a numeric value corresponding to one of the defined levels is passed</span>
+<span class="sd">    in, the corresponding string representation is returned.</span>
+
+<span class="sd">    If a string representation of the level is passed in, the corresponding</span>
+<span class="sd">    numeric value is returned.</span>
+
+<span class="sd">    If no matching numeric or string value is passed in, the string</span>
+<span class="sd">    &#39;Level %s&#39; % level is returned.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># See Issues #22386, #27937 and #29220 for why it&#39;s this way</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">_levelToName</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">result</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">result</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">_nameToLevel</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">result</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">result</span>
+    <span class="k">return</span> <span class="s2">&quot;Level </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">level</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">addLevelName</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="n">levelName</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Associate &#39;levelName&#39; with &#39;level&#39;.</span>
+
+<span class="sd">    This is used when converting levels to text during message formatting.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_acquireLock</span><span class="p">()</span>
+    <span class="k">try</span><span class="p">:</span>    <span class="c1">#unlikely to cause an exception, but you never know...</span>
+        <span class="n">_levelToName</span><span class="p">[</span><span class="n">level</span><span class="p">]</span> <span class="o">=</span> <span class="n">levelName</span>
+        <span class="n">_nameToLevel</span><span class="p">[</span><span class="n">levelName</span><span class="p">]</span> <span class="o">=</span> <span class="n">level</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">_releaseLock</span><span class="p">()</span>
+
+<span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">sys</span><span class="p">,</span> <span class="s2">&quot;_getframe&quot;</span><span class="p">):</span>
+    <span class="n">currentframe</span> <span class="o">=</span> <span class="k">lambda</span><span class="p">:</span> <span class="n">sys</span><span class="o">.</span><span class="n">_getframe</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+<span class="k">else</span><span class="p">:</span> <span class="c1">#pragma: no cover</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">currentframe</span><span class="p">():</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Return the frame object for the caller&#39;s stack frame.&quot;&quot;&quot;</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">Exception</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">exc</span><span class="o">.</span><span class="n">__traceback__</span><span class="o">.</span><span class="n">tb_frame</span><span class="o">.</span><span class="n">f_back</span>
+
+<span class="c1">#</span>
+<span class="c1"># _srcfile is used when walking the stack to check when we&#39;ve got the first</span>
+<span class="c1"># caller stack frame, by skipping frames whose filename is that of this</span>
+<span class="c1"># module&#39;s source. It therefore should contain the filename of this module&#39;s</span>
+<span class="c1"># source file.</span>
+<span class="c1">#</span>
+<span class="c1"># Ordinarily we would use __file__ for this, but frozen modules don&#39;t always</span>
+<span class="c1"># have __file__ set, for some reason (see Issue #21736). Thus, we get the</span>
+<span class="c1"># filename from a handy code object from a function defined in this module.</span>
+<span class="c1"># (There&#39;s no particular reason for picking addLevelName.)</span>
+<span class="c1">#</span>
+
+<span class="n">_srcfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">normcase</span><span class="p">(</span><span class="n">addLevelName</span><span class="o">.</span><span class="vm">__code__</span><span class="o">.</span><span class="n">co_filename</span><span class="p">)</span>
+
+<span class="c1"># _srcfile is only used in conjunction with sys._getframe().</span>
+<span class="c1"># Setting _srcfile to None will prevent findCaller() from being called. This</span>
+<span class="c1"># way, you can avoid the overhead of fetching caller information.</span>
+
+<span class="c1"># The following is based on warnings._is_internal_frame. It makes sure that</span>
+<span class="c1"># frames of the import mechanism are skipped when logging at module level and</span>
+<span class="c1"># using a stacklevel value greater than one.</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">_is_internal_frame</span><span class="p">(</span><span class="n">frame</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Signal whether the frame is a CPython or logging module internal.&quot;&quot;&quot;</span>
+    <span class="n">filename</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">normcase</span><span class="p">(</span><span class="n">frame</span><span class="o">.</span><span class="n">f_code</span><span class="o">.</span><span class="n">co_filename</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">filename</span> <span class="o">==</span> <span class="n">_srcfile</span> <span class="ow">or</span> <span class="p">(</span>
+        <span class="s2">&quot;importlib&quot;</span> <span class="ow">in</span> <span class="n">filename</span> <span class="ow">and</span> <span class="s2">&quot;_bootstrap&quot;</span> <span class="ow">in</span> <span class="n">filename</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_checkLevel</span><span class="p">(</span><span class="n">level</span><span class="p">):</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+        <span class="n">rv</span> <span class="o">=</span> <span class="n">level</span>
+    <span class="k">elif</span> <span class="nb">str</span><span class="p">(</span><span class="n">level</span><span class="p">)</span> <span class="o">==</span> <span class="n">level</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">level</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">_nameToLevel</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Unknown level: </span><span class="si">%r</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">level</span><span class="p">)</span>
+        <span class="n">rv</span> <span class="o">=</span> <span class="n">_nameToLevel</span><span class="p">[</span><span class="n">level</span><span class="p">]</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Level not an integer or a valid string: </span><span class="si">%r</span><span class="s2">&quot;</span>
+                        <span class="o">%</span> <span class="p">(</span><span class="n">level</span><span class="p">,))</span>
+    <span class="k">return</span> <span class="n">rv</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   Thread-related stuff</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<span class="c1">#</span>
+<span class="c1">#_lock is used to serialize access to shared data structures in this module.</span>
+<span class="c1">#This needs to be an RLock because fileConfig() creates and configures</span>
+<span class="c1">#Handlers, and so might arbitrary user threads. Since Handler code updates the</span>
+<span class="c1">#shared dictionary _handlers, it needs to acquire the lock. But if configuring,</span>
+<span class="c1">#the lock would already have been acquired - so we need an RLock.</span>
+<span class="c1">#The same argument applies to Loggers and Manager.loggerDict.</span>
+<span class="c1">#</span>
+<span class="n">_lock</span> <span class="o">=</span> <span class="n">threading</span><span class="o">.</span><span class="n">RLock</span><span class="p">()</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_acquireLock</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Acquire the module-level lock for serializing access to shared data.</span>
+
+<span class="sd">    This should be released with _releaseLock().</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">_lock</span><span class="p">:</span>
+        <span class="n">_lock</span><span class="o">.</span><span class="n">acquire</span><span class="p">()</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_releaseLock</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Release the module-level lock acquired by calling _acquireLock().</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">_lock</span><span class="p">:</span>
+        <span class="n">_lock</span><span class="o">.</span><span class="n">release</span><span class="p">()</span>
+
+
+<span class="c1"># Prevent a held logging lock from blocking a child from logging.</span>
+
+<span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">os</span><span class="p">,</span> <span class="s1">&#39;register_at_fork&#39;</span><span class="p">):</span>  <span class="c1"># Windows and friends.</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">_register_at_fork_reinit_lock</span><span class="p">(</span><span class="n">instance</span><span class="p">):</span>
+        <span class="k">pass</span>  <span class="c1"># no-op when os.register_at_fork does not exist.</span>
+<span class="k">else</span><span class="p">:</span>
+    <span class="c1"># A collection of instances with a _at_fork_reinit method (logging.Handler)</span>
+    <span class="c1"># to be called in the child after forking.  The weakref avoids us keeping</span>
+    <span class="c1"># discarded Handler instances alive.</span>
+    <span class="n">_at_fork_reinit_lock_weakset</span> <span class="o">=</span> <span class="n">weakref</span><span class="o">.</span><span class="n">WeakSet</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_register_at_fork_reinit_lock</span><span class="p">(</span><span class="n">instance</span><span class="p">):</span>
+        <span class="n">_acquireLock</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">_at_fork_reinit_lock_weakset</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">instance</span><span class="p">)</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="n">_releaseLock</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_after_at_fork_child_reinit_locks</span><span class="p">():</span>
+        <span class="k">for</span> <span class="n">handler</span> <span class="ow">in</span> <span class="n">_at_fork_reinit_lock_weakset</span><span class="p">:</span>
+            <span class="n">handler</span><span class="o">.</span><span class="n">_at_fork_reinit</span><span class="p">()</span>
+
+        <span class="c1"># _acquireLock() was called in the parent before forking.</span>
+        <span class="c1"># The lock is reinitialized to unlocked state.</span>
+        <span class="n">_lock</span><span class="o">.</span><span class="n">_at_fork_reinit</span><span class="p">()</span>
+
+    <span class="n">os</span><span class="o">.</span><span class="n">register_at_fork</span><span class="p">(</span><span class="n">before</span><span class="o">=</span><span class="n">_acquireLock</span><span class="p">,</span>
+                        <span class="n">after_in_child</span><span class="o">=</span><span class="n">_after_at_fork_child_reinit_locks</span><span class="p">,</span>
+                        <span class="n">after_in_parent</span><span class="o">=</span><span class="n">_releaseLock</span><span class="p">)</span>
+
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   The logging record</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">LogRecord</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    A LogRecord instance represents an event being logged.</span>
+
+<span class="sd">    LogRecord instances are created every time something is logged. They</span>
+<span class="sd">    contain all the information pertinent to the event being logged. The</span>
+<span class="sd">    main information passed in is in msg and args, which are combined</span>
+<span class="sd">    using str(msg) % args to create the message field of the record. The</span>
+<span class="sd">    record also includes information such as when the record was created,</span>
+<span class="sd">    the source line where the logging call was made, and any exception</span>
+<span class="sd">    information to be logged.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">pathname</span><span class="p">,</span> <span class="n">lineno</span><span class="p">,</span>
+                 <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="p">,</span> <span class="n">func</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">sinfo</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize a logging record with interesting information.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">ct</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">time</span><span class="p">()</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">msg</span> <span class="o">=</span> <span class="n">msg</span>
+        <span class="c1">#</span>
+        <span class="c1"># The following statement allows passing of a dictionary as a sole</span>
+        <span class="c1"># argument, so that you can do something like</span>
+        <span class="c1">#  logging.debug(&quot;a %(a)d b %(b)s&quot;, {&#39;a&#39;:1, &#39;b&#39;:2})</span>
+        <span class="c1"># Suggested by Stefan Behnel.</span>
+        <span class="c1"># Note that without the test for args[0], we get a problem because</span>
+        <span class="c1"># during formatting, we test to see if the arg is present using</span>
+        <span class="c1"># &#39;if self.args:&#39;. If the event being logged is e.g. &#39;Value is %d&#39;</span>
+        <span class="c1"># and if the passed arg fails &#39;if self.args:&#39; then no formatting</span>
+        <span class="c1"># is done. For example, logger.warning(&#39;Value is %d&#39;, 0) would log</span>
+        <span class="c1"># &#39;Value is %d&#39; instead of &#39;Value is 0&#39;.</span>
+        <span class="c1"># For the use case of passing a dictionary, this should not be a</span>
+        <span class="c1"># problem.</span>
+        <span class="c1"># Issue #21172: a request was made to relax the isinstance check</span>
+        <span class="c1"># to hasattr(args[0], &#39;__getitem__&#39;). However, the docs on string</span>
+        <span class="c1"># formatting still seem to suggest a mapping object is required.</span>
+        <span class="c1"># Thus, while not removing the isinstance check, it does now look</span>
+        <span class="c1"># for collections.abc.Mapping rather than, as before, dict.</span>
+        <span class="k">if</span> <span class="p">(</span><span class="n">args</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Mapping</span><span class="p">)</span>
+            <span class="ow">and</span> <span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">]):</span>
+            <span class="n">args</span> <span class="o">=</span> <span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">args</span> <span class="o">=</span> <span class="n">args</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">levelname</span> <span class="o">=</span> <span class="n">getLevelName</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">levelno</span> <span class="o">=</span> <span class="n">level</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">pathname</span> <span class="o">=</span> <span class="n">pathname</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">filename</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">pathname</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">module</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filename</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+        <span class="k">except</span> <span class="p">(</span><span class="ne">TypeError</span><span class="p">,</span> <span class="ne">ValueError</span><span class="p">,</span> <span class="ne">AttributeError</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">filename</span> <span class="o">=</span> <span class="n">pathname</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">module</span> <span class="o">=</span> <span class="s2">&quot;Unknown module&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">exc_info</span> <span class="o">=</span> <span class="n">exc_info</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">exc_text</span> <span class="o">=</span> <span class="kc">None</span>      <span class="c1"># used to cache the traceback text</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">stack_info</span> <span class="o">=</span> <span class="n">sinfo</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">lineno</span> <span class="o">=</span> <span class="n">lineno</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">funcName</span> <span class="o">=</span> <span class="n">func</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">created</span> <span class="o">=</span> <span class="n">ct</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">msecs</span> <span class="o">=</span> <span class="nb">int</span><span class="p">((</span><span class="n">ct</span> <span class="o">-</span> <span class="nb">int</span><span class="p">(</span><span class="n">ct</span><span class="p">))</span> <span class="o">*</span> <span class="mi">1000</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.0</span>  <span class="c1"># see gh-89047</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">relativeCreated</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">created</span> <span class="o">-</span> <span class="n">_startTime</span><span class="p">)</span> <span class="o">*</span> <span class="mi">1000</span>
+        <span class="k">if</span> <span class="n">logThreads</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">thread</span> <span class="o">=</span> <span class="n">threading</span><span class="o">.</span><span class="n">get_ident</span><span class="p">()</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">threadName</span> <span class="o">=</span> <span class="n">threading</span><span class="o">.</span><span class="n">current_thread</span><span class="p">()</span><span class="o">.</span><span class="n">name</span>
+        <span class="k">else</span><span class="p">:</span> <span class="c1"># pragma: no cover</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">thread</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">threadName</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">logMultiprocessing</span><span class="p">:</span> <span class="c1"># pragma: no cover</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">processName</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">processName</span> <span class="o">=</span> <span class="s1">&#39;MainProcess&#39;</span>
+            <span class="n">mp</span> <span class="o">=</span> <span class="n">sys</span><span class="o">.</span><span class="n">modules</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;multiprocessing&#39;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">mp</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="c1"># Errors may occur if multiprocessing has not finished loading</span>
+                <span class="c1"># yet - e.g. if a custom import hook causes third-party code</span>
+                <span class="c1"># to run when multiprocessing calls import. See issue 8200</span>
+                <span class="c1"># for an example</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">processName</span> <span class="o">=</span> <span class="n">mp</span><span class="o">.</span><span class="n">current_process</span><span class="p">()</span><span class="o">.</span><span class="n">name</span>
+                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span> <span class="c1">#pragma: no cover</span>
+                    <span class="k">pass</span>
+        <span class="k">if</span> <span class="n">logProcesses</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">os</span><span class="p">,</span> <span class="s1">&#39;getpid&#39;</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">process</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getpid</span><span class="p">()</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">process</span> <span class="o">=</span> <span class="kc">None</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">taskName</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">if</span> <span class="n">logAsyncioTasks</span><span class="p">:</span>
+            <span class="n">asyncio</span> <span class="o">=</span> <span class="n">sys</span><span class="o">.</span><span class="n">modules</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;asyncio&#39;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">asyncio</span><span class="p">:</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">taskName</span> <span class="o">=</span> <span class="n">asyncio</span><span class="o">.</span><span class="n">current_task</span><span class="p">()</span><span class="o">.</span><span class="n">get_name</span><span class="p">()</span>
+                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+                    <span class="k">pass</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="s1">&#39;&lt;LogRecord: </span><span class="si">%s</span><span class="s1">, </span><span class="si">%s</span><span class="s1">, </span><span class="si">%s</span><span class="s1">, </span><span class="si">%s</span><span class="s1">, &quot;</span><span class="si">%s</span><span class="s1">&quot;&gt;&#39;</span><span class="o">%</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">levelno</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">pathname</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">lineno</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">msg</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">getMessage</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Return the message for this LogRecord.</span>
+
+<span class="sd">        Return the message for this LogRecord after merging any user-supplied</span>
+<span class="sd">        arguments with the message.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">msg</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">msg</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">args</span><span class="p">:</span>
+            <span class="n">msg</span> <span class="o">=</span> <span class="n">msg</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">args</span>
+        <span class="k">return</span> <span class="n">msg</span>
+
+<span class="c1">#</span>
+<span class="c1">#   Determine which class to use when instantiating log records.</span>
+<span class="c1">#</span>
+<span class="n">_logRecordFactory</span> <span class="o">=</span> <span class="n">LogRecord</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">setLogRecordFactory</span><span class="p">(</span><span class="n">factory</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Set the factory to be used when instantiating a log record.</span>
+
+<span class="sd">    :param factory: A callable which will be called to instantiate</span>
+<span class="sd">    a log record.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_logRecordFactory</span>
+    <span class="n">_logRecordFactory</span> <span class="o">=</span> <span class="n">factory</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">getLogRecordFactory</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Return the factory to be used when instantiating a log record.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="k">return</span> <span class="n">_logRecordFactory</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">makeLogRecord</span><span class="p">(</span><span class="nb">dict</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Make a LogRecord whose attributes are defined by the specified dictionary,</span>
+<span class="sd">    This function is useful for converting a logging event received over</span>
+<span class="sd">    a socket connection (which is sent as a dictionary) into a LogRecord</span>
+<span class="sd">    instance.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">rv</span> <span class="o">=</span> <span class="n">_logRecordFactory</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="p">(),</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+    <span class="n">rv</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="nb">dict</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">rv</span>
+
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   Formatter classes and functions</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="n">_str_formatter</span> <span class="o">=</span> <span class="n">StrFormatter</span><span class="p">()</span>
+<span class="k">del</span> <span class="n">StrFormatter</span>
+
+
+<span class="k">class</span><span class="w"> </span><span class="nc">PercentStyle</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+
+    <span class="n">default_format</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%(message)s</span><span class="s1">&#39;</span>
+    <span class="n">asctime_format</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%(asctime)s</span><span class="s1">&#39;</span>
+    <span class="n">asctime_search</span> <span class="o">=</span> <span class="s1">&#39;%(asctime)&#39;</span>
+    <span class="n">validation_pattern</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;%\(\w+\)[#0+ -]*(\*|\d+)?(\.(\*|\d+))?[diouxefgcrsa%]&#39;</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">I</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fmt</span><span class="p">,</span> <span class="o">*</span><span class="p">,</span> <span class="n">defaults</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span> <span class="o">=</span> <span class="n">fmt</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">default_format</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_defaults</span> <span class="o">=</span> <span class="n">defaults</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">usesTime</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">asctime_search</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mi">0</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">validate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Validate the input format, ensure it matches the correct style&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">validation_pattern</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span><span class="p">):</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Invalid format &#39;</span><span class="si">%s</span><span class="s2">&#39; for &#39;</span><span class="si">%s</span><span class="s2">&#39; style&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">default_format</span><span class="p">[</span><span class="mi">0</span><span class="p">]))</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_format</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">defaults</span> <span class="o">:=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_defaults</span><span class="p">:</span>
+            <span class="n">values</span> <span class="o">=</span> <span class="n">defaults</span> <span class="o">|</span> <span class="n">record</span><span class="o">.</span><span class="vm">__dict__</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">values</span> <span class="o">=</span> <span class="n">record</span><span class="o">.</span><span class="vm">__dict__</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span> <span class="o">%</span> <span class="n">values</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">format</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_format</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">KeyError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Formatting field not found in record: </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">e</span><span class="p">)</span>
+
+
+<span class="k">class</span><span class="w"> </span><span class="nc">StrFormatStyle</span><span class="p">(</span><span class="n">PercentStyle</span><span class="p">):</span>
+    <span class="n">default_format</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{message}</span><span class="s1">&#39;</span>
+    <span class="n">asctime_format</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{asctime}</span><span class="s1">&#39;</span>
+    <span class="n">asctime_search</span> <span class="o">=</span> <span class="s1">&#39;{asctime&#39;</span>
+
+    <span class="n">fmt_spec</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;^(.?[&lt;&gt;=^])?[+ -]?#?0?(\d+|{\w+})?[,_]?(\.(\d+|{\w+}))?[bcdefgnosx%]?$&#39;</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">I</span><span class="p">)</span>
+    <span class="n">field_spec</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;^(\d+|\w+)(\.\w+|\[[^]]+\])*$&#39;</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_format</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">defaults</span> <span class="o">:=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_defaults</span><span class="p">:</span>
+            <span class="n">values</span> <span class="o">=</span> <span class="n">defaults</span> <span class="o">|</span> <span class="n">record</span><span class="o">.</span><span class="vm">__dict__</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">values</span> <span class="o">=</span> <span class="n">record</span><span class="o">.</span><span class="vm">__dict__</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="o">**</span><span class="n">values</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">validate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Validate the input format, ensure it is the correct string formatting style&quot;&quot;&quot;</span>
+        <span class="n">fields</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">_</span><span class="p">,</span> <span class="n">fieldname</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">conversion</span> <span class="ow">in</span> <span class="n">_str_formatter</span><span class="o">.</span><span class="n">parse</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span><span class="p">):</span>
+                <span class="k">if</span> <span class="n">fieldname</span><span class="p">:</span>
+                    <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">field_spec</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">fieldname</span><span class="p">):</span>
+                        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;invalid field name/expression: </span><span class="si">%r</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">fieldname</span><span class="p">)</span>
+                    <span class="n">fields</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">fieldname</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">conversion</span> <span class="ow">and</span> <span class="n">conversion</span> <span class="ow">not</span> <span class="ow">in</span> <span class="s1">&#39;rsa&#39;</span><span class="p">:</span>
+                    <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;invalid conversion: </span><span class="si">%r</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">conversion</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">spec</span> <span class="ow">and</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">fmt_spec</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">spec</span><span class="p">):</span>
+                    <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;bad specifier: </span><span class="si">%r</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">spec</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;invalid format: </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">e</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">fields</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;invalid format: no fields&#39;</span><span class="p">)</span>
+
+
+<span class="k">class</span><span class="w"> </span><span class="nc">StringTemplateStyle</span><span class="p">(</span><span class="n">PercentStyle</span><span class="p">):</span>
+    <span class="n">default_format</span> <span class="o">=</span> <span class="s1">&#39;$</span><span class="si">{message}</span><span class="s1">&#39;</span>
+    <span class="n">asctime_format</span> <span class="o">=</span> <span class="s1">&#39;$</span><span class="si">{asctime}</span><span class="s1">&#39;</span>
+    <span class="n">asctime_search</span> <span class="o">=</span> <span class="s1">&#39;$</span><span class="si">{asctime}</span><span class="s1">&#39;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_tpl</span> <span class="o">=</span> <span class="n">Template</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">usesTime</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">fmt</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span>
+        <span class="k">return</span> <span class="n">fmt</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s1">&#39;$asctime&#39;</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">fmt</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">asctime_search</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mi">0</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">validate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">pattern</span> <span class="o">=</span> <span class="n">Template</span><span class="o">.</span><span class="n">pattern</span>
+        <span class="n">fields</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+        <span class="k">for</span> <span class="n">m</span> <span class="ow">in</span> <span class="n">pattern</span><span class="o">.</span><span class="n">finditer</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span><span class="p">):</span>
+            <span class="n">d</span> <span class="o">=</span> <span class="n">m</span><span class="o">.</span><span class="n">groupdict</span><span class="p">()</span>
+            <span class="k">if</span> <span class="n">d</span><span class="p">[</span><span class="s1">&#39;named&#39;</span><span class="p">]:</span>
+                <span class="n">fields</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s1">&#39;named&#39;</span><span class="p">])</span>
+            <span class="k">elif</span> <span class="n">d</span><span class="p">[</span><span class="s1">&#39;braced&#39;</span><span class="p">]:</span>
+                <span class="n">fields</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s1">&#39;braced&#39;</span><span class="p">])</span>
+            <span class="k">elif</span> <span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span> <span class="o">==</span> <span class="s1">&#39;$&#39;</span><span class="p">:</span>
+                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;invalid format: bare </span><span class="se">\&#39;</span><span class="s1">$</span><span class="se">\&#39;</span><span class="s1"> not allowed&#39;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">fields</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;invalid format: no fields&#39;</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_format</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">defaults</span> <span class="o">:=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_defaults</span><span class="p">:</span>
+            <span class="n">values</span> <span class="o">=</span> <span class="n">defaults</span> <span class="o">|</span> <span class="n">record</span><span class="o">.</span><span class="vm">__dict__</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">values</span> <span class="o">=</span> <span class="n">record</span><span class="o">.</span><span class="vm">__dict__</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_tpl</span><span class="o">.</span><span class="n">substitute</span><span class="p">(</span><span class="o">**</span><span class="n">values</span><span class="p">)</span>
+
+
+<span class="n">BASIC_FORMAT</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="si">%(levelname)s</span><span class="s2">:</span><span class="si">%(name)s</span><span class="s2">:</span><span class="si">%(message)s</span><span class="s2">&quot;</span>
+
+<span class="n">_STYLES</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="s1">&#39;%&#39;</span><span class="p">:</span> <span class="p">(</span><span class="n">PercentStyle</span><span class="p">,</span> <span class="n">BASIC_FORMAT</span><span class="p">),</span>
+    <span class="s1">&#39;{&#39;</span><span class="p">:</span> <span class="p">(</span><span class="n">StrFormatStyle</span><span class="p">,</span> <span class="s1">&#39;</span><span class="si">{levelname}</span><span class="s1">:</span><span class="si">{name}</span><span class="s1">:</span><span class="si">{message}</span><span class="s1">&#39;</span><span class="p">),</span>
+    <span class="s1">&#39;$&#39;</span><span class="p">:</span> <span class="p">(</span><span class="n">StringTemplateStyle</span><span class="p">,</span> <span class="s1">&#39;$</span><span class="si">{levelname}</span><span class="s1">:$</span><span class="si">{name}</span><span class="s1">:$</span><span class="si">{message}</span><span class="s1">&#39;</span><span class="p">),</span>
+<span class="p">}</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">Formatter</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Formatter instances are used to convert a LogRecord to text.</span>
+
+<span class="sd">    Formatters need to know how a LogRecord is constructed. They are</span>
+<span class="sd">    responsible for converting a LogRecord to (usually) a string which can</span>
+<span class="sd">    be interpreted by either a human or an external system. The base Formatter</span>
+<span class="sd">    allows a formatting string to be specified. If none is supplied, the</span>
+<span class="sd">    style-dependent default value, &quot;%(message)s&quot;, &quot;{message}&quot;, or</span>
+<span class="sd">    &quot;${message}&quot;, is used.</span>
+
+<span class="sd">    The Formatter can be initialized with a format string which makes use of</span>
+<span class="sd">    knowledge of the LogRecord attributes - e.g. the default value mentioned</span>
+<span class="sd">    above makes use of the fact that the user&#39;s message and arguments are pre-</span>
+<span class="sd">    formatted into a LogRecord&#39;s message attribute. Currently, the useful</span>
+<span class="sd">    attributes in a LogRecord are described by:</span>
+
+<span class="sd">    %(name)s            Name of the logger (logging channel)</span>
+<span class="sd">    %(levelno)s         Numeric logging level for the message (DEBUG, INFO,</span>
+<span class="sd">                        WARNING, ERROR, CRITICAL)</span>
+<span class="sd">    %(levelname)s       Text logging level for the message (&quot;DEBUG&quot;, &quot;INFO&quot;,</span>
+<span class="sd">                        &quot;WARNING&quot;, &quot;ERROR&quot;, &quot;CRITICAL&quot;)</span>
+<span class="sd">    %(pathname)s        Full pathname of the source file where the logging</span>
+<span class="sd">                        call was issued (if available)</span>
+<span class="sd">    %(filename)s        Filename portion of pathname</span>
+<span class="sd">    %(module)s          Module (name portion of filename)</span>
+<span class="sd">    %(lineno)d          Source line number where the logging call was issued</span>
+<span class="sd">                        (if available)</span>
+<span class="sd">    %(funcName)s        Function name</span>
+<span class="sd">    %(created)f         Time when the LogRecord was created (time.time()</span>
+<span class="sd">                        return value)</span>
+<span class="sd">    %(asctime)s         Textual time when the LogRecord was created</span>
+<span class="sd">    %(msecs)d           Millisecond portion of the creation time</span>
+<span class="sd">    %(relativeCreated)d Time in milliseconds when the LogRecord was created,</span>
+<span class="sd">                        relative to the time the logging module was loaded</span>
+<span class="sd">                        (typically at application startup time)</span>
+<span class="sd">    %(thread)d          Thread ID (if available)</span>
+<span class="sd">    %(threadName)s      Thread name (if available)</span>
+<span class="sd">    %(taskName)s        Task name (if available)</span>
+<span class="sd">    %(process)d         Process ID (if available)</span>
+<span class="sd">    %(message)s         The result of record.getMessage(), computed just as</span>
+<span class="sd">                        the record is emitted</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="n">converter</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">localtime</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">datefmt</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">style</span><span class="o">=</span><span class="s1">&#39;%&#39;</span><span class="p">,</span> <span class="n">validate</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">*</span><span class="p">,</span>
+                 <span class="n">defaults</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize the formatter with specified format strings.</span>
+
+<span class="sd">        Initialize the formatter either with the specified format string, or a</span>
+<span class="sd">        default as described above. Allow for specialized date formatting with</span>
+<span class="sd">        the optional datefmt argument. If datefmt is omitted, you get an</span>
+<span class="sd">        ISO8601-like (or RFC 3339-like) format.</span>
+
+<span class="sd">        Use a style parameter of &#39;%&#39;, &#39;{&#39; or &#39;$&#39; to specify that you want to</span>
+<span class="sd">        use one of %-formatting, :meth:`str.format` (``{}``) formatting or</span>
+<span class="sd">        :class:`string.Template` formatting in your format string.</span>
+
+<span class="sd">        .. versionchanged:: 3.2</span>
+<span class="sd">           Added the ``style`` parameter.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">style</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">_STYLES</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Style must be one of: </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="s1">&#39;,&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
+                             <span class="n">_STYLES</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_style</span> <span class="o">=</span> <span class="n">_STYLES</span><span class="p">[</span><span class="n">style</span><span class="p">][</span><span class="mi">0</span><span class="p">](</span><span class="n">fmt</span><span class="p">,</span> <span class="n">defaults</span><span class="o">=</span><span class="n">defaults</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">validate</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_style</span><span class="o">.</span><span class="n">validate</span><span class="p">()</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">_fmt</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_style</span><span class="o">.</span><span class="n">_fmt</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">datefmt</span> <span class="o">=</span> <span class="n">datefmt</span>
+
+    <span class="n">default_time_format</span> <span class="o">=</span> <span class="s1">&#39;%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S&#39;</span>
+    <span class="n">default_msec_format</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%s</span><span class="s1">,</span><span class="si">%03d</span><span class="s1">&#39;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">formatTime</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">,</span> <span class="n">datefmt</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Return the creation time of the specified LogRecord as formatted text.</span>
+
+<span class="sd">        This method should be called from format() by a formatter which</span>
+<span class="sd">        wants to make use of a formatted time. This method can be overridden</span>
+<span class="sd">        in formatters to provide for any specific requirement, but the</span>
+<span class="sd">        basic behaviour is as follows: if datefmt (a string) is specified,</span>
+<span class="sd">        it is used with time.strftime() to format the creation time of the</span>
+<span class="sd">        record. Otherwise, an ISO8601-like (or RFC 3339-like) format is used.</span>
+<span class="sd">        The resulting string is returned. This function uses a user-configurable</span>
+<span class="sd">        function to convert the creation time to a tuple. By default,</span>
+<span class="sd">        time.localtime() is used; to change this for a particular formatter</span>
+<span class="sd">        instance, set the &#39;converter&#39; attribute to a function with the same</span>
+<span class="sd">        signature as time.localtime() or time.gmtime(). To change it for all</span>
+<span class="sd">        formatters, for example if you want all logging times to be shown in GMT,</span>
+<span class="sd">        set the &#39;converter&#39; attribute in the Formatter class.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">ct</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">converter</span><span class="p">(</span><span class="n">record</span><span class="o">.</span><span class="n">created</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">datefmt</span><span class="p">:</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">datefmt</span><span class="p">,</span> <span class="n">ct</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">default_time_format</span><span class="p">,</span> <span class="n">ct</span><span class="p">)</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">default_msec_format</span><span class="p">:</span>
+                <span class="n">s</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">default_msec_format</span> <span class="o">%</span> <span class="p">(</span><span class="n">s</span><span class="p">,</span> <span class="n">record</span><span class="o">.</span><span class="n">msecs</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">s</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">formatException</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ei</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Format and return the specified exception information as a string.</span>
+
+<span class="sd">        This default implementation just uses</span>
+<span class="sd">        traceback.print_exception()</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">sio</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">StringIO</span><span class="p">()</span>
+        <span class="n">tb</span> <span class="o">=</span> <span class="n">ei</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+        <span class="c1"># See issues #9427, #1553375. Commented out for now.</span>
+        <span class="c1">#if getattr(self, &#39;fullstack&#39;, False):</span>
+        <span class="c1">#    traceback.print_stack(tb.tb_frame.f_back, file=sio)</span>
+        <span class="n">traceback</span><span class="o">.</span><span class="n">print_exception</span><span class="p">(</span><span class="n">ei</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">ei</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">tb</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">sio</span><span class="p">)</span>
+        <span class="n">s</span> <span class="o">=</span> <span class="n">sio</span><span class="o">.</span><span class="n">getvalue</span><span class="p">()</span>
+        <span class="n">sio</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">s</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">:]</span> <span class="o">==</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">:</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">s</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+        <span class="k">return</span> <span class="n">s</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">usesTime</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Check if the format uses the creation time of the record.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_style</span><span class="o">.</span><span class="n">usesTime</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">formatMessage</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_style</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">formatStack</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">stack_info</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        This method is provided as an extension point for specialized</span>
+<span class="sd">        formatting of stack information.</span>
+
+<span class="sd">        The input data is a string as returned from a call to</span>
+<span class="sd">        :func:`traceback.print_stack`, but with the last trailing newline</span>
+<span class="sd">        removed.</span>
+
+<span class="sd">        The base implementation just returns the value passed in.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="n">stack_info</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">format</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Format the specified record as text.</span>
+
+<span class="sd">        The record&#39;s attribute dictionary is used as the operand to a</span>
+<span class="sd">        string formatting operation which yields the returned string.</span>
+<span class="sd">        Before formatting the dictionary, a couple of preparatory steps</span>
+<span class="sd">        are carried out. The message attribute of the record is computed</span>
+<span class="sd">        using LogRecord.getMessage(). If the formatting string uses the</span>
+<span class="sd">        time (as determined by a call to usesTime(), formatTime() is</span>
+<span class="sd">        called to format the event time. If there is exception information,</span>
+<span class="sd">        it is formatted using formatException() and appended to the message.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">record</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">record</span><span class="o">.</span><span class="n">getMessage</span><span class="p">()</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">usesTime</span><span class="p">():</span>
+            <span class="n">record</span><span class="o">.</span><span class="n">asctime</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">formatTime</span><span class="p">(</span><span class="n">record</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">datefmt</span><span class="p">)</span>
+        <span class="n">s</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">formatMessage</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">record</span><span class="o">.</span><span class="n">exc_info</span><span class="p">:</span>
+            <span class="c1"># Cache the traceback text to avoid converting it multiple times</span>
+            <span class="c1"># (it&#39;s constant anyway)</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">record</span><span class="o">.</span><span class="n">exc_text</span><span class="p">:</span>
+                <span class="n">record</span><span class="o">.</span><span class="n">exc_text</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">formatException</span><span class="p">(</span><span class="n">record</span><span class="o">.</span><span class="n">exc_info</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">record</span><span class="o">.</span><span class="n">exc_text</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">s</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">:]</span> <span class="o">!=</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">:</span>
+                <span class="n">s</span> <span class="o">=</span> <span class="n">s</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">s</span> <span class="o">+</span> <span class="n">record</span><span class="o">.</span><span class="n">exc_text</span>
+        <span class="k">if</span> <span class="n">record</span><span class="o">.</span><span class="n">stack_info</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">s</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">:]</span> <span class="o">!=</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">:</span>
+                <span class="n">s</span> <span class="o">=</span> <span class="n">s</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">s</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">formatStack</span><span class="p">(</span><span class="n">record</span><span class="o">.</span><span class="n">stack_info</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">s</span>
+
+<span class="c1">#</span>
+<span class="c1">#   The default formatter to use when no other is specified</span>
+<span class="c1">#</span>
+<span class="n">_defaultFormatter</span> <span class="o">=</span> <span class="n">Formatter</span><span class="p">()</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">BufferingFormatter</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    A formatter suitable for formatting a number of records.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">linefmt</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Optionally specify a formatter which will be used to format each</span>
+<span class="sd">        individual record.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">linefmt</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">linefmt</span> <span class="o">=</span> <span class="n">linefmt</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">linefmt</span> <span class="o">=</span> <span class="n">_defaultFormatter</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">formatHeader</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">records</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Return the header string for the specified records.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="s2">&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">formatFooter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">records</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Return the footer string for the specified records.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="s2">&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">format</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">records</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Format the specified records and return the result as a string.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">rv</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">records</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">rv</span> <span class="o">=</span> <span class="n">rv</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">formatHeader</span><span class="p">(</span><span class="n">records</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">record</span> <span class="ow">in</span> <span class="n">records</span><span class="p">:</span>
+                <span class="n">rv</span> <span class="o">=</span> <span class="n">rv</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">linefmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+            <span class="n">rv</span> <span class="o">=</span> <span class="n">rv</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">formatFooter</span><span class="p">(</span><span class="n">records</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">rv</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   Filter classes and functions</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">Filter</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Filter instances are used to perform arbitrary filtering of LogRecords.</span>
+
+<span class="sd">    Loggers and Handlers can optionally use Filter instances to filter</span>
+<span class="sd">    records as desired. The base filter class only allows events which are</span>
+<span class="sd">    below a certain point in the logger hierarchy. For example, a filter</span>
+<span class="sd">    initialized with &quot;A.B&quot; will allow events logged by loggers &quot;A.B&quot;,</span>
+<span class="sd">    &quot;A.B.C&quot;, &quot;A.B.C.D&quot;, &quot;A.B.D&quot; etc. but not &quot;A.BB&quot;, &quot;B.A.B&quot; etc. If</span>
+<span class="sd">    initialized with the empty string, all events are passed.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize a filter.</span>
+
+<span class="sd">        Initialize with the name of the logger which, together with its</span>
+<span class="sd">        children, will have its events allowed through the filter. If no</span>
+<span class="sd">        name is specified, allow every event.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">nlen</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">filter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Determine if the specified record is to be logged.</span>
+
+<span class="sd">        Returns True if the record should be logged, or False otherwise.</span>
+<span class="sd">        If deemed appropriate, the record may be modified in-place.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">nlen</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">True</span>
+        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">==</span> <span class="n">record</span><span class="o">.</span><span class="n">name</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">True</span>
+        <span class="k">elif</span> <span class="n">record</span><span class="o">.</span><span class="n">name</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">nlen</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">False</span>
+        <span class="k">return</span> <span class="p">(</span><span class="n">record</span><span class="o">.</span><span class="n">name</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">nlen</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;.&quot;</span><span class="p">)</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">Filterer</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    A base class for loggers and handlers which allows them to share</span>
+<span class="sd">    common code.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize the list of filters to be an empty list.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">filters</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">addFilter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">filter</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Add the specified filter to this handler.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">filter</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">filters</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">filters</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">filter</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">removeFilter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">filter</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Remove the specified filter from this handler.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="nb">filter</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">filters</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">filters</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="nb">filter</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">filter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Determine if a record is loggable by consulting all the filters.</span>
+
+<span class="sd">        The default is to allow the record to be logged; any filter can veto</span>
+<span class="sd">        this by returning a false value.</span>
+<span class="sd">        If a filter attached to a handler returns a log record instance,</span>
+<span class="sd">        then that instance is used in place of the original log record in</span>
+<span class="sd">        any further processing of the event by that handler.</span>
+<span class="sd">        If a filter returns any other true value, the original log record</span>
+<span class="sd">        is used in any further processing of the event by that handler.</span>
+
+<span class="sd">        If none of the filters return false values, this method returns</span>
+<span class="sd">        a log record.</span>
+<span class="sd">        If any of the filters return a false value, this method returns</span>
+<span class="sd">        a false value.</span>
+
+<span class="sd">        .. versionchanged:: 3.2</span>
+
+<span class="sd">           Allow filters to be just callables.</span>
+
+<span class="sd">        .. versionchanged:: 3.12</span>
+<span class="sd">           Allow filters to return a LogRecord instead of</span>
+<span class="sd">           modifying it in place.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">filters</span><span class="p">:</span>
+            <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="s1">&#39;filter&#39;</span><span class="p">):</span>
+                <span class="n">result</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">result</span> <span class="o">=</span> <span class="n">f</span><span class="p">(</span><span class="n">record</span><span class="p">)</span> <span class="c1"># assume callable - will raise if not</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">result</span><span class="p">:</span>
+                <span class="k">return</span> <span class="kc">False</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">LogRecord</span><span class="p">):</span>
+                <span class="n">record</span> <span class="o">=</span> <span class="n">result</span>
+        <span class="k">return</span> <span class="n">record</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   Handler classes and functions</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<span class="n">_handlers</span> <span class="o">=</span> <span class="n">weakref</span><span class="o">.</span><span class="n">WeakValueDictionary</span><span class="p">()</span>  <span class="c1">#map of handler names to handlers</span>
+<span class="n">_handlerList</span> <span class="o">=</span> <span class="p">[]</span> <span class="c1"># added to allow handlers to be removed in reverse of order initialized</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_removeHandlerRef</span><span class="p">(</span><span class="n">wr</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Remove a handler reference from the internal cleanup list.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># This function can be called during module teardown, when globals are</span>
+    <span class="c1"># set to None. It can also be called from another thread. So we need to</span>
+    <span class="c1"># pre-emptively grab the necessary globals and check if they&#39;re None,</span>
+    <span class="c1"># to prevent race conditions and failures during interpreter shutdown.</span>
+    <span class="n">acquire</span><span class="p">,</span> <span class="n">release</span><span class="p">,</span> <span class="n">handlers</span> <span class="o">=</span> <span class="n">_acquireLock</span><span class="p">,</span> <span class="n">_releaseLock</span><span class="p">,</span> <span class="n">_handlerList</span>
+    <span class="k">if</span> <span class="n">acquire</span> <span class="ow">and</span> <span class="n">release</span> <span class="ow">and</span> <span class="n">handlers</span><span class="p">:</span>
+        <span class="n">acquire</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">handlers</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">wr</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+            <span class="k">pass</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="n">release</span><span class="p">()</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_addHandlerRef</span><span class="p">(</span><span class="n">handler</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Add a handler to the internal cleanup list using a weak reference.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_acquireLock</span><span class="p">()</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">_handlerList</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">weakref</span><span class="o">.</span><span class="n">ref</span><span class="p">(</span><span class="n">handler</span><span class="p">,</span> <span class="n">_removeHandlerRef</span><span class="p">))</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">_releaseLock</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">getHandlerByName</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get a handler with the specified *name*, or None if there isn&#39;t one with</span>
+<span class="sd">    that name.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_handlers</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">getHandlerNames</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Return all known handler names as an immutable set.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">_handlers</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+    <span class="k">return</span> <span class="nb">frozenset</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
+
+
+<span class="k">class</span><span class="w"> </span><span class="nc">Handler</span><span class="p">(</span><span class="n">Filterer</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Handler instances dispatch logging events to specific destinations.</span>
+
+<span class="sd">    The base handler class. Acts as a placeholder which defines the Handler</span>
+<span class="sd">    interface. Handlers can optionally use Formatter instances to format</span>
+<span class="sd">    records as desired. By default, no formatter is specified; in this case,</span>
+<span class="sd">    the &#39;raw&#39; message as determined by record.message is logged.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="o">=</span><span class="n">NOTSET</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initializes the instance - basically setting the formatter to None</span>
+<span class="sd">        and the filter list to empty.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">Filterer</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_name</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">level</span> <span class="o">=</span> <span class="n">_checkLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">formatter</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_closed</span> <span class="o">=</span> <span class="kc">False</span>
+        <span class="c1"># Add the handler to the global _handlerList (for cleanup on shutdown)</span>
+        <span class="n">_addHandlerRef</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">createLock</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">get_name</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_name</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">set_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">):</span>
+        <span class="n">_acquireLock</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_name</span> <span class="ow">in</span> <span class="n">_handlers</span><span class="p">:</span>
+                <span class="k">del</span> <span class="n">_handlers</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">_name</span><span class="p">]</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_name</span> <span class="o">=</span> <span class="n">name</span>
+            <span class="k">if</span> <span class="n">name</span><span class="p">:</span>
+                <span class="n">_handlers</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="n">_releaseLock</span><span class="p">()</span>
+
+    <span class="n">name</span> <span class="o">=</span> <span class="nb">property</span><span class="p">(</span><span class="n">get_name</span><span class="p">,</span> <span class="n">set_name</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">createLock</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Acquire a thread lock for serializing access to the underlying I/O.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">lock</span> <span class="o">=</span> <span class="n">threading</span><span class="o">.</span><span class="n">RLock</span><span class="p">()</span>
+        <span class="n">_register_at_fork_reinit_lock</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_at_fork_reinit</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">lock</span><span class="o">.</span><span class="n">_at_fork_reinit</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">acquire</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Acquire the I/O thread lock.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">lock</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">lock</span><span class="o">.</span><span class="n">acquire</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">release</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Release the I/O thread lock.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">lock</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">lock</span><span class="o">.</span><span class="n">release</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">setLevel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Set the logging level of this handler.  level must be an int or a str.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">level</span> <span class="o">=</span> <span class="n">_checkLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">format</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Format the specified record.</span>
+
+<span class="sd">        If a formatter is set, use it. Otherwise, use the default formatter</span>
+<span class="sd">        for the module.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">formatter</span><span class="p">:</span>
+            <span class="n">fmt</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">formatter</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">fmt</span> <span class="o">=</span> <span class="n">_defaultFormatter</span>
+        <span class="k">return</span> <span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">emit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Do whatever it takes to actually log the specified logging record.</span>
+
+<span class="sd">        This version is intended to be implemented by subclasses and so</span>
+<span class="sd">        raises a NotImplementedError.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">raise</span> <span class="ne">NotImplementedError</span><span class="p">(</span><span class="s1">&#39;emit must be implemented &#39;</span>
+                                  <span class="s1">&#39;by Handler subclasses&#39;</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">handle</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Conditionally emit the specified logging record.</span>
+
+<span class="sd">        Emission depends on filters which may have been added to the handler.</span>
+<span class="sd">        Wrap the actual emission of the record with acquisition/release of</span>
+<span class="sd">        the I/O thread lock.</span>
+
+<span class="sd">        Returns an instance of the log record that was emitted</span>
+<span class="sd">        if it passed all filters, otherwise a false value is returned.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">rv</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">rv</span><span class="p">,</span> <span class="n">LogRecord</span><span class="p">):</span>
+            <span class="n">record</span> <span class="o">=</span> <span class="n">rv</span>
+        <span class="k">if</span> <span class="n">rv</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">acquire</span><span class="p">()</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">emit</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+            <span class="k">finally</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">release</span><span class="p">()</span>
+        <span class="k">return</span> <span class="n">rv</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">setFormatter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fmt</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Set the formatter for this handler.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">formatter</span> <span class="o">=</span> <span class="n">fmt</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">flush</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Ensure all logging output has been flushed.</span>
+
+<span class="sd">        This version does nothing and is intended to be implemented by</span>
+<span class="sd">        subclasses.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">pass</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">close</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Tidy up any resources used by the handler.</span>
+
+<span class="sd">        This version removes the handler from an internal map of handlers,</span>
+<span class="sd">        _handlers, which is used for handler lookup by name. Subclasses</span>
+<span class="sd">        should ensure that this gets called from overridden close()</span>
+<span class="sd">        methods.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1">#get the module data lock, as we&#39;re updating a shared structure.</span>
+        <span class="n">_acquireLock</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>    <span class="c1">#unlikely to raise an exception, but you never know...</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_closed</span> <span class="o">=</span> <span class="kc">True</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_name</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_name</span> <span class="ow">in</span> <span class="n">_handlers</span><span class="p">:</span>
+                <span class="k">del</span> <span class="n">_handlers</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">_name</span><span class="p">]</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="n">_releaseLock</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">handleError</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Handle errors which occur during an emit() call.</span>
+
+<span class="sd">        This method should be called from handlers when an exception is</span>
+<span class="sd">        encountered during an emit() call. If raiseExceptions is false,</span>
+<span class="sd">        exceptions get silently ignored. This is what is mostly wanted</span>
+<span class="sd">        for a logging system - most users will not care about errors in</span>
+<span class="sd">        the logging system, they are more interested in application errors.</span>
+<span class="sd">        You could, however, replace this with a custom handler if you wish.</span>
+<span class="sd">        The record which was being processed is passed in to this method.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">raiseExceptions</span> <span class="ow">and</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="p">:</span>  <span class="c1"># see issue 13807</span>
+            <span class="n">t</span><span class="p">,</span> <span class="n">v</span><span class="p">,</span> <span class="n">tb</span> <span class="o">=</span> <span class="n">sys</span><span class="o">.</span><span class="n">exc_info</span><span class="p">()</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;--- Logging error ---</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
+                <span class="n">traceback</span><span class="o">.</span><span class="n">print_exception</span><span class="p">(</span><span class="n">t</span><span class="p">,</span> <span class="n">v</span><span class="p">,</span> <span class="n">tb</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="p">)</span>
+                <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;Call stack:</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
+                <span class="c1"># Walk the stack frame up until we&#39;re out of logging,</span>
+                <span class="c1"># so as to print the calling context.</span>
+                <span class="n">frame</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">tb_frame</span>
+                <span class="k">while</span> <span class="p">(</span><span class="n">frame</span> <span class="ow">and</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">frame</span><span class="o">.</span><span class="n">f_code</span><span class="o">.</span><span class="n">co_filename</span><span class="p">)</span> <span class="o">==</span>
+                       <span class="n">__path__</span><span class="p">[</span><span class="mi">0</span><span class="p">]):</span>
+                    <span class="n">frame</span> <span class="o">=</span> <span class="n">frame</span><span class="o">.</span><span class="n">f_back</span>
+                <span class="k">if</span> <span class="n">frame</span><span class="p">:</span>
+                    <span class="n">traceback</span><span class="o">.</span><span class="n">print_stack</span><span class="p">(</span><span class="n">frame</span><span class="p">,</span> <span class="n">file</span><span class="o">=</span><span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="p">)</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="c1"># couldn&#39;t find the right stack frame, for some reason</span>
+                    <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;Logged from file </span><span class="si">%s</span><span class="s1">, line </span><span class="si">%s</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span>
+                                     <span class="n">record</span><span class="o">.</span><span class="n">filename</span><span class="p">,</span> <span class="n">record</span><span class="o">.</span><span class="n">lineno</span><span class="p">))</span>
+                <span class="c1"># Issue 18671: output logging message and arguments</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;Message: </span><span class="si">%r</span><span class="se">\n</span><span class="s1">&#39;</span>
+                                     <span class="s1">&#39;Arguments: </span><span class="si">%s</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">record</span><span class="o">.</span><span class="n">msg</span><span class="p">,</span>
+                                                          <span class="n">record</span><span class="o">.</span><span class="n">args</span><span class="p">))</span>
+                <span class="k">except</span> <span class="ne">RecursionError</span><span class="p">:</span>  <span class="c1"># See issue 36272</span>
+                    <span class="k">raise</span>
+                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+                    <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;Unable to print the message and arguments&#39;</span>
+                                     <span class="s1">&#39; - possible formatting error.</span><span class="se">\n</span><span class="s1">Use the&#39;</span>
+                                     <span class="s1">&#39; traceback above to help find the error.</span><span class="se">\n</span><span class="s1">&#39;</span>
+                                    <span class="p">)</span>
+            <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span> <span class="c1">#pragma: no cover</span>
+                <span class="k">pass</span>    <span class="c1"># see issue 5971</span>
+            <span class="k">finally</span><span class="p">:</span>
+                <span class="k">del</span> <span class="n">t</span><span class="p">,</span> <span class="n">v</span><span class="p">,</span> <span class="n">tb</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="n">getLevelName</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">)</span>
+        <span class="k">return</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1"> (</span><span class="si">%s</span><span class="s1">)&gt;&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span> <span class="n">level</span><span class="p">)</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">StreamHandler</span><span class="p">(</span><span class="n">Handler</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    A handler class which writes logging records, appropriately formatted,</span>
+<span class="sd">    to a stream. Note that this class does not close the stream, as</span>
+<span class="sd">    sys.stdout or sys.stderr may be used.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="n">terminator</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">stream</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize the handler.</span>
+
+<span class="sd">        If stream is not specified, sys.stderr is used.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">Handler</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">stream</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">stream</span> <span class="o">=</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">stream</span> <span class="o">=</span> <span class="n">stream</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">flush</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Flushes the stream.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">acquire</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">stream</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">stream</span><span class="p">,</span> <span class="s2">&quot;flush&quot;</span><span class="p">):</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">stream</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">release</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">emit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Emit a record.</span>
+
+<span class="sd">        If a formatter is specified, it is used to format the record.</span>
+<span class="sd">        The record is then written to the stream with a trailing newline.  If</span>
+<span class="sd">        exception information is present, it is formatted using</span>
+<span class="sd">        traceback.print_exception and appended to the stream.  If the stream</span>
+<span class="sd">        has an &#39;encoding&#39; attribute, it is used to determine how to do the</span>
+<span class="sd">        output to the stream.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">msg</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+            <span class="n">stream</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">stream</span>
+            <span class="c1"># issue 35046: merged two stream.writes into one.</span>
+            <span class="n">stream</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">msg</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">terminator</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
+        <span class="k">except</span> <span class="ne">RecursionError</span><span class="p">:</span>  <span class="c1"># See issue 36272</span>
+            <span class="k">raise</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">handleError</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">setStream</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">stream</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Sets the StreamHandler&#39;s stream to the specified value,</span>
+<span class="sd">        if it is different.</span>
+
+<span class="sd">        Returns the old stream, if the stream was changed, or None</span>
+<span class="sd">        if it wasn&#39;t.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">stream</span> <span class="ow">is</span> <span class="bp">self</span><span class="o">.</span><span class="n">stream</span><span class="p">:</span>
+            <span class="n">result</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">result</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">stream</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">acquire</span><span class="p">()</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">stream</span> <span class="o">=</span> <span class="n">stream</span>
+            <span class="k">finally</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">release</span><span class="p">()</span>
+        <span class="k">return</span> <span class="n">result</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="n">getLevelName</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">)</span>
+        <span class="n">name</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">stream</span><span class="p">,</span> <span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
+        <span class="c1">#  bpo-36015: name can be an int</span>
+        <span class="n">name</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">name</span><span class="p">:</span>
+            <span class="n">name</span> <span class="o">+=</span> <span class="s1">&#39; &#39;</span>
+        <span class="k">return</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1"> </span><span class="si">%s</span><span class="s1">(</span><span class="si">%s</span><span class="s1">)&gt;&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">level</span><span class="p">)</span>
+
+    <span class="n">__class_getitem__</span> <span class="o">=</span> <span class="nb">classmethod</span><span class="p">(</span><span class="n">GenericAlias</span><span class="p">)</span>
+
+
+<span class="k">class</span><span class="w"> </span><span class="nc">FileHandler</span><span class="p">(</span><span class="n">StreamHandler</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    A handler class which writes formatted logging records to disk files.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">delay</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">errors</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Open the specified file and use it as the stream for logging.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Issue #27493: add support for Path objects to be passed in</span>
+        <span class="n">filename</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">fspath</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+        <span class="c1">#keep the absolute path, otherwise derived classes which use this</span>
+        <span class="c1">#may come a cropper when the current directory changes</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">baseFilename</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">mode</span> <span class="o">=</span> <span class="n">mode</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">encoding</span> <span class="o">=</span> <span class="n">encoding</span>
+        <span class="k">if</span> <span class="s2">&quot;b&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">mode</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">encoding</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">text_encoding</span><span class="p">(</span><span class="n">encoding</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">errors</span> <span class="o">=</span> <span class="n">errors</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">delay</span> <span class="o">=</span> <span class="n">delay</span>
+        <span class="c1"># bpo-26789: FileHandler keeps a reference to the builtin open()</span>
+        <span class="c1"># function to be able to open or reopen the file during Python</span>
+        <span class="c1"># finalization.</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_builtin_open</span> <span class="o">=</span> <span class="nb">open</span>
+        <span class="k">if</span> <span class="n">delay</span><span class="p">:</span>
+            <span class="c1">#We don&#39;t open the stream, but we still need to call the</span>
+            <span class="c1">#Handler constructor to set level, formatter, lock etc.</span>
+            <span class="n">Handler</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">stream</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">StreamHandler</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_open</span><span class="p">())</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">close</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Closes the stream.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">acquire</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">stream</span><span class="p">:</span>
+                    <span class="k">try</span><span class="p">:</span>
+                        <span class="bp">self</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
+                    <span class="k">finally</span><span class="p">:</span>
+                        <span class="n">stream</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">stream</span>
+                        <span class="bp">self</span><span class="o">.</span><span class="n">stream</span> <span class="o">=</span> <span class="kc">None</span>
+                        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">stream</span><span class="p">,</span> <span class="s2">&quot;close&quot;</span><span class="p">):</span>
+                            <span class="n">stream</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+            <span class="k">finally</span><span class="p">:</span>
+                <span class="c1"># Issue #19523: call unconditionally to</span>
+                <span class="c1"># prevent a handler leak when delay is set</span>
+                <span class="c1"># Also see Issue #42378: we also rely on</span>
+                <span class="c1"># self._closed being set to True there</span>
+                <span class="n">StreamHandler</span><span class="o">.</span><span class="n">close</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">release</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_open</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Open the current base file with the (original) mode and encoding.</span>
+<span class="sd">        Return the resulting stream.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">open_func</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_builtin_open</span>
+        <span class="k">return</span> <span class="n">open_func</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">baseFilename</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">mode</span><span class="p">,</span>
+                         <span class="n">encoding</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">encoding</span><span class="p">,</span> <span class="n">errors</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">errors</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">emit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Emit a record.</span>
+
+<span class="sd">        If the stream was not opened because &#39;delay&#39; was specified in the</span>
+<span class="sd">        constructor, open it before calling the superclass&#39;s emit.</span>
+
+<span class="sd">        If stream is not open, current mode is &#39;w&#39; and `_closed=True`, record</span>
+<span class="sd">        will not be emitted (see Issue #42378).</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">stream</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">mode</span> <span class="o">!=</span> <span class="s1">&#39;w&#39;</span> <span class="ow">or</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">_closed</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">stream</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_open</span><span class="p">()</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">stream</span><span class="p">:</span>
+            <span class="n">StreamHandler</span><span class="o">.</span><span class="n">emit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="n">getLevelName</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">)</span>
+        <span class="k">return</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1"> </span><span class="si">%s</span><span class="s1"> (</span><span class="si">%s</span><span class="s1">)&gt;&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">baseFilename</span><span class="p">,</span> <span class="n">level</span><span class="p">)</span>
+
+
+<span class="k">class</span><span class="w"> </span><span class="nc">_StderrHandler</span><span class="p">(</span><span class="n">StreamHandler</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    This class is like a StreamHandler using sys.stderr, but always uses</span>
+<span class="sd">    whatever sys.stderr is currently set to rather than the value of</span>
+<span class="sd">    sys.stderr at handler construction time.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="o">=</span><span class="n">NOTSET</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize the handler.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">Handler</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">)</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">stream</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span>
+
+
+<span class="n">_defaultLastResort</span> <span class="o">=</span> <span class="n">_StderrHandler</span><span class="p">(</span><span class="n">WARNING</span><span class="p">)</span>
+<span class="n">lastResort</span> <span class="o">=</span> <span class="n">_defaultLastResort</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   Manager classes and functions</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">PlaceHolder</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    PlaceHolder instances are used in the Manager logger hierarchy to take</span>
+<span class="sd">    the place of nodes for which no loggers have been defined. This class is</span>
+<span class="sd">    intended for internal use only and not as part of the public API.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">alogger</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize with the specified logger being a child of this placeholder.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">loggerMap</span> <span class="o">=</span> <span class="p">{</span> <span class="n">alogger</span> <span class="p">:</span> <span class="kc">None</span> <span class="p">}</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">append</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">alogger</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Add the specified logger as a child of this placeholder.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">alogger</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">loggerMap</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">loggerMap</span><span class="p">[</span><span class="n">alogger</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+<span class="c1">#</span>
+<span class="c1">#   Determine which class to use when instantiating loggers.</span>
+<span class="c1">#</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">setLoggerClass</span><span class="p">(</span><span class="n">klass</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Set the class to be used when instantiating a logger. The class should</span>
+<span class="sd">    define __init__() such that only a name argument is required, and the</span>
+<span class="sd">    __init__() should call Logger.__init__()</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">klass</span> <span class="o">!=</span> <span class="n">Logger</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">issubclass</span><span class="p">(</span><span class="n">klass</span><span class="p">,</span> <span class="n">Logger</span><span class="p">):</span>
+            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;logger not derived from logging.Logger: &quot;</span>
+                            <span class="o">+</span> <span class="n">klass</span><span class="o">.</span><span class="vm">__name__</span><span class="p">)</span>
+    <span class="k">global</span> <span class="n">_loggerClass</span>
+    <span class="n">_loggerClass</span> <span class="o">=</span> <span class="n">klass</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">getLoggerClass</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Return the class to be used when instantiating a logger.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_loggerClass</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">Manager</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    There is [under normal circumstances] just one Manager instance, which</span>
+<span class="sd">    holds the hierarchy of loggers.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">rootnode</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize the manager with the root node of the logger hierarchy.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">=</span> <span class="n">rootnode</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">disable</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">emittedNoHandlerWarning</span> <span class="o">=</span> <span class="kc">False</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">loggerClass</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">logRecordFactory</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">disable</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_disable</span>
+
+    <span class="nd">@disable</span><span class="o">.</span><span class="n">setter</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">disable</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">value</span><span class="p">):</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_disable</span> <span class="o">=</span> <span class="n">_checkLevel</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">getLogger</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Get a logger with the specified name (channel name), creating it</span>
+<span class="sd">        if it doesn&#39;t yet exist. This name is a dot-separated hierarchical</span>
+<span class="sd">        name, such as &quot;a&quot;, &quot;a.b&quot;, &quot;a.b.c&quot; or similar.</span>
+
+<span class="sd">        If a PlaceHolder existed for the specified name [i.e. the logger</span>
+<span class="sd">        didn&#39;t exist but a child of it did], replace it with the created</span>
+<span class="sd">        logger and fix up the parent/child references which pointed to the</span>
+<span class="sd">        placeholder to now point to the logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">rv</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;A logger name must be a string&#39;</span><span class="p">)</span>
+        <span class="n">_acquireLock</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span><span class="p">:</span>
+                <span class="n">rv</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">rv</span><span class="p">,</span> <span class="n">PlaceHolder</span><span class="p">):</span>
+                    <span class="n">ph</span> <span class="o">=</span> <span class="n">rv</span>
+                    <span class="n">rv</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">loggerClass</span> <span class="ow">or</span> <span class="n">_loggerClass</span><span class="p">)(</span><span class="n">name</span><span class="p">)</span>
+                    <span class="n">rv</span><span class="o">.</span><span class="n">manager</span> <span class="o">=</span> <span class="bp">self</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">rv</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">_fixupChildren</span><span class="p">(</span><span class="n">ph</span><span class="p">,</span> <span class="n">rv</span><span class="p">)</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">_fixupParents</span><span class="p">(</span><span class="n">rv</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">rv</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">loggerClass</span> <span class="ow">or</span> <span class="n">_loggerClass</span><span class="p">)(</span><span class="n">name</span><span class="p">)</span>
+                <span class="n">rv</span><span class="o">.</span><span class="n">manager</span> <span class="o">=</span> <span class="bp">self</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">rv</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_fixupParents</span><span class="p">(</span><span class="n">rv</span><span class="p">)</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="n">_releaseLock</span><span class="p">()</span>
+        <span class="k">return</span> <span class="n">rv</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">setLoggerClass</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">klass</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Set the class to be used when instantiating a logger with this Manager.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">klass</span> <span class="o">!=</span> <span class="n">Logger</span><span class="p">:</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="nb">issubclass</span><span class="p">(</span><span class="n">klass</span><span class="p">,</span> <span class="n">Logger</span><span class="p">):</span>
+                <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;logger not derived from logging.Logger: &quot;</span>
+                                <span class="o">+</span> <span class="n">klass</span><span class="o">.</span><span class="vm">__name__</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">loggerClass</span> <span class="o">=</span> <span class="n">klass</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">setLogRecordFactory</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">factory</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Set the factory to be used when instantiating a log record with this</span>
+<span class="sd">        Manager.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">logRecordFactory</span> <span class="o">=</span> <span class="n">factory</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_fixupParents</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">alogger</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Ensure that there are either loggers or placeholders all the way</span>
+<span class="sd">        from the specified logger to the root of the logger hierarchy.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">name</span> <span class="o">=</span> <span class="n">alogger</span><span class="o">.</span><span class="n">name</span>
+        <span class="n">i</span> <span class="o">=</span> <span class="n">name</span><span class="o">.</span><span class="n">rfind</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)</span>
+        <span class="n">rv</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">while</span> <span class="p">(</span><span class="n">i</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">rv</span><span class="p">:</span>
+            <span class="n">substr</span> <span class="o">=</span> <span class="n">name</span><span class="p">[:</span><span class="n">i</span><span class="p">]</span>
+            <span class="k">if</span> <span class="n">substr</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span><span class="p">[</span><span class="n">substr</span><span class="p">]</span> <span class="o">=</span> <span class="n">PlaceHolder</span><span class="p">(</span><span class="n">alogger</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">obj</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span><span class="p">[</span><span class="n">substr</span><span class="p">]</span>
+                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">Logger</span><span class="p">):</span>
+                    <span class="n">rv</span> <span class="o">=</span> <span class="n">obj</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="k">assert</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">PlaceHolder</span><span class="p">)</span>
+                    <span class="n">obj</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">alogger</span><span class="p">)</span>
+            <span class="n">i</span> <span class="o">=</span> <span class="n">name</span><span class="o">.</span><span class="n">rfind</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">rv</span><span class="p">:</span>
+            <span class="n">rv</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">root</span>
+        <span class="n">alogger</span><span class="o">.</span><span class="n">parent</span> <span class="o">=</span> <span class="n">rv</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_fixupChildren</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ph</span><span class="p">,</span> <span class="n">alogger</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Ensure that children of the placeholder ph are connected to the</span>
+<span class="sd">        specified logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">name</span> <span class="o">=</span> <span class="n">alogger</span><span class="o">.</span><span class="n">name</span>
+        <span class="n">namelen</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">ph</span><span class="o">.</span><span class="n">loggerMap</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+            <span class="c1">#The if means ... if not c.parent.name.startswith(nm)</span>
+            <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">name</span><span class="p">[:</span><span class="n">namelen</span><span class="p">]</span> <span class="o">!=</span> <span class="n">name</span><span class="p">:</span>
+                <span class="n">alogger</span><span class="o">.</span><span class="n">parent</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">parent</span>
+                <span class="n">c</span><span class="o">.</span><span class="n">parent</span> <span class="o">=</span> <span class="n">alogger</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_clear_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Clear the cache for all loggers in loggerDict</span>
+<span class="sd">        Called when level changes are made</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+
+        <span class="n">_acquireLock</span><span class="p">()</span>
+        <span class="k">for</span> <span class="n">logger</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">loggerDict</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">logger</span><span class="p">,</span> <span class="n">Logger</span><span class="p">):</span>
+                <span class="n">logger</span><span class="o">.</span><span class="n">_cache</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">_cache</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+        <span class="n">_releaseLock</span><span class="p">()</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1">#   Logger classes and functions</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">Logger</span><span class="p">(</span><span class="n">Filterer</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Instances of the Logger class represent a single logging channel. A</span>
+<span class="sd">    &quot;logging channel&quot; indicates an area of an application. Exactly how an</span>
+<span class="sd">    &quot;area&quot; is defined is up to the application developer. Since an</span>
+<span class="sd">    application can have any number of areas, logging channels are identified</span>
+<span class="sd">    by a unique string. Application areas can be nested (e.g. an area</span>
+<span class="sd">    of &quot;input processing&quot; might include sub-areas &quot;read CSV files&quot;, &quot;read</span>
+<span class="sd">    XLS files&quot; and &quot;read Gnumeric files&quot;). To cater for this natural nesting,</span>
+<span class="sd">    channel names are organized into a namespace hierarchy where levels are</span>
+<span class="sd">    separated by periods, much like the Java or Python package namespace. So</span>
+<span class="sd">    in the instance given above, channel names might be &quot;input&quot; for the upper</span>
+<span class="sd">    level, and &quot;input.csv&quot;, &quot;input.xls&quot; and &quot;input.gnu&quot; for the sub-levels.</span>
+<span class="sd">    There is no arbitrary limit to the depth of nesting.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">level</span><span class="o">=</span><span class="n">NOTSET</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize the logger with a name and an optional level.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">Filterer</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">level</span> <span class="o">=</span> <span class="n">_checkLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">parent</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">propagate</span> <span class="o">=</span> <span class="kc">True</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">handlers</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">disabled</span> <span class="o">=</span> <span class="kc">False</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_cache</span> <span class="o">=</span> <span class="p">{}</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">setLevel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Set the logging level of this logger.  level must be an int or a str.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">level</span> <span class="o">=</span> <span class="n">_checkLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">_clear_cache</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">debug</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Log &#39;msg % args&#39; with severity &#39;DEBUG&#39;.</span>
+
+<span class="sd">        To pass exception information, use the keyword argument exc_info with</span>
+<span class="sd">        a true value, e.g.</span>
+
+<span class="sd">        logger.debug(&quot;Houston, we have a %s&quot;, &quot;thorny problem&quot;, exc_info=True)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">isEnabledFor</span><span class="p">(</span><span class="n">DEBUG</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log</span><span class="p">(</span><span class="n">DEBUG</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">info</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Log &#39;msg % args&#39; with severity &#39;INFO&#39;.</span>
+
+<span class="sd">        To pass exception information, use the keyword argument exc_info with</span>
+<span class="sd">        a true value, e.g.</span>
+
+<span class="sd">        logger.info(&quot;Houston, we have a %s&quot;, &quot;notable problem&quot;, exc_info=True)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">isEnabledFor</span><span class="p">(</span><span class="n">INFO</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log</span><span class="p">(</span><span class="n">INFO</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">warning</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Log &#39;msg % args&#39; with severity &#39;WARNING&#39;.</span>
+
+<span class="sd">        To pass exception information, use the keyword argument exc_info with</span>
+<span class="sd">        a true value, e.g.</span>
+
+<span class="sd">        logger.warning(&quot;Houston, we have a %s&quot;, &quot;bit of a problem&quot;, exc_info=True)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">isEnabledFor</span><span class="p">(</span><span class="n">WARNING</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log</span><span class="p">(</span><span class="n">WARNING</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">warn</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The &#39;warn&#39; method is deprecated, &quot;</span>
+            <span class="s2">&quot;use &#39;warning&#39; instead&quot;</span><span class="p">,</span> <span class="ne">DeprecationWarning</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Log &#39;msg % args&#39; with severity &#39;ERROR&#39;.</span>
+
+<span class="sd">        To pass exception information, use the keyword argument exc_info with</span>
+<span class="sd">        a true value, e.g.</span>
+
+<span class="sd">        logger.error(&quot;Houston, we have a %s&quot;, &quot;major problem&quot;, exc_info=True)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">isEnabledFor</span><span class="p">(</span><span class="n">ERROR</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log</span><span class="p">(</span><span class="n">ERROR</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">exception</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Convenience method for logging an ERROR with exception information.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">error</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="o">=</span><span class="n">exc_info</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">critical</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Log &#39;msg % args&#39; with severity &#39;CRITICAL&#39;.</span>
+
+<span class="sd">        To pass exception information, use the keyword argument exc_info with</span>
+<span class="sd">        a true value, e.g.</span>
+
+<span class="sd">        logger.critical(&quot;Houston, we have a %s&quot;, &quot;major disaster&quot;, exc_info=True)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">isEnabledFor</span><span class="p">(</span><span class="n">CRITICAL</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log</span><span class="p">(</span><span class="n">CRITICAL</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">fatal</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Don&#39;t use this method, use critical() instead.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">critical</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Log &#39;msg % args&#39; with the integer severity &#39;level&#39;.</span>
+
+<span class="sd">        To pass exception information, use the keyword argument exc_info with</span>
+<span class="sd">        a true value, e.g.</span>
+
+<span class="sd">        logger.log(level, &quot;We have a %s&quot;, &quot;mysterious problem&quot;, exc_info=True)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">raiseExceptions</span><span class="p">:</span>
+                <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;level must be an integer&quot;</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="k">return</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">isEnabledFor</span><span class="p">(</span><span class="n">level</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">findCaller</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">stack_info</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">stacklevel</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Find the stack frame of the caller so that we can note the source</span>
+<span class="sd">        file name, line number and function name.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">f</span> <span class="o">=</span> <span class="n">currentframe</span><span class="p">()</span>
+        <span class="c1">#On some versions of IronPython, currentframe() returns None if</span>
+        <span class="c1">#IronPython isn&#39;t run with -X:Frames.</span>
+        <span class="k">if</span> <span class="n">f</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="s2">&quot;(unknown file)&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;(unknown function)&quot;</span><span class="p">,</span> <span class="kc">None</span>
+        <span class="k">while</span> <span class="n">stacklevel</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">next_f</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">f_back</span>
+            <span class="k">if</span> <span class="n">next_f</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="c1">## We&#39;ve got options here.</span>
+                <span class="c1">## If we want to use the last (deepest) frame:</span>
+                <span class="k">break</span>
+                <span class="c1">## If we want to mimic the warnings module:</span>
+                <span class="c1">#return (&quot;sys&quot;, 1, &quot;(unknown function)&quot;, None)</span>
+                <span class="c1">## If we want to be pedantic:</span>
+                <span class="c1">#raise ValueError(&quot;call stack is not deep enough&quot;)</span>
+            <span class="n">f</span> <span class="o">=</span> <span class="n">next_f</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">_is_internal_frame</span><span class="p">(</span><span class="n">f</span><span class="p">):</span>
+                <span class="n">stacklevel</span> <span class="o">-=</span> <span class="mi">1</span>
+        <span class="n">co</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">f_code</span>
+        <span class="n">sinfo</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">if</span> <span class="n">stack_info</span><span class="p">:</span>
+            <span class="k">with</span> <span class="n">io</span><span class="o">.</span><span class="n">StringIO</span><span class="p">()</span> <span class="k">as</span> <span class="n">sio</span><span class="p">:</span>
+                <span class="n">sio</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">&quot;Stack (most recent call last):</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span>
+                <span class="n">traceback</span><span class="o">.</span><span class="n">print_stack</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="n">file</span><span class="o">=</span><span class="n">sio</span><span class="p">)</span>
+                <span class="n">sinfo</span> <span class="o">=</span> <span class="n">sio</span><span class="o">.</span><span class="n">getvalue</span><span class="p">()</span>
+                <span class="k">if</span> <span class="n">sinfo</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">:</span>
+                    <span class="n">sinfo</span> <span class="o">=</span> <span class="n">sinfo</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+        <span class="k">return</span> <span class="n">co</span><span class="o">.</span><span class="n">co_filename</span><span class="p">,</span> <span class="n">f</span><span class="o">.</span><span class="n">f_lineno</span><span class="p">,</span> <span class="n">co</span><span class="o">.</span><span class="n">co_name</span><span class="p">,</span> <span class="n">sinfo</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">makeRecord</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">fn</span><span class="p">,</span> <span class="n">lno</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="p">,</span>
+                   <span class="n">func</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">extra</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">sinfo</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        A factory method which can be overridden in subclasses to create</span>
+<span class="sd">        specialized LogRecords.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">rv</span> <span class="o">=</span> <span class="n">_logRecordFactory</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">fn</span><span class="p">,</span> <span class="n">lno</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span>
+                             <span class="n">sinfo</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">extra</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">extra</span><span class="p">:</span>
+                <span class="k">if</span> <span class="p">(</span><span class="n">key</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;message&quot;</span><span class="p">,</span> <span class="s2">&quot;asctime&quot;</span><span class="p">])</span> <span class="ow">or</span> <span class="p">(</span><span class="n">key</span> <span class="ow">in</span> <span class="n">rv</span><span class="o">.</span><span class="vm">__dict__</span><span class="p">):</span>
+                    <span class="k">raise</span> <span class="ne">KeyError</span><span class="p">(</span><span class="s2">&quot;Attempt to overwrite </span><span class="si">%r</span><span class="s2"> in LogRecord&quot;</span> <span class="o">%</span> <span class="n">key</span><span class="p">)</span>
+                <span class="n">rv</span><span class="o">.</span><span class="vm">__dict__</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">extra</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+        <span class="k">return</span> <span class="n">rv</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_log</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">extra</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">stack_info</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+             <span class="n">stacklevel</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Low-level logging routine which creates a LogRecord and then calls</span>
+<span class="sd">        all the handlers of this logger to handle the record.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">sinfo</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">if</span> <span class="n">_srcfile</span><span class="p">:</span>
+            <span class="c1">#IronPython doesn&#39;t track Python frames, so findCaller raises an</span>
+            <span class="c1">#exception on some versions of IronPython. We trap it here so that</span>
+            <span class="c1">#IronPython can use logging.</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">fn</span><span class="p">,</span> <span class="n">lno</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">sinfo</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">findCaller</span><span class="p">(</span><span class="n">stack_info</span><span class="p">,</span> <span class="n">stacklevel</span><span class="p">)</span>
+            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span> <span class="c1"># pragma: no cover</span>
+                <span class="n">fn</span><span class="p">,</span> <span class="n">lno</span><span class="p">,</span> <span class="n">func</span> <span class="o">=</span> <span class="s2">&quot;(unknown file)&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;(unknown function)&quot;</span>
+        <span class="k">else</span><span class="p">:</span> <span class="c1"># pragma: no cover</span>
+            <span class="n">fn</span><span class="p">,</span> <span class="n">lno</span><span class="p">,</span> <span class="n">func</span> <span class="o">=</span> <span class="s2">&quot;(unknown file)&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;(unknown function)&quot;</span>
+        <span class="k">if</span> <span class="n">exc_info</span><span class="p">:</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">exc_info</span><span class="p">,</span> <span class="ne">BaseException</span><span class="p">):</span>
+                <span class="n">exc_info</span> <span class="o">=</span> <span class="p">(</span><span class="nb">type</span><span class="p">(</span><span class="n">exc_info</span><span class="p">),</span> <span class="n">exc_info</span><span class="p">,</span> <span class="n">exc_info</span><span class="o">.</span><span class="n">__traceback__</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">exc_info</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">):</span>
+                <span class="n">exc_info</span> <span class="o">=</span> <span class="n">sys</span><span class="o">.</span><span class="n">exc_info</span><span class="p">()</span>
+        <span class="n">record</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">makeRecord</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">fn</span><span class="p">,</span> <span class="n">lno</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span>
+                                 <span class="n">exc_info</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">extra</span><span class="p">,</span> <span class="n">sinfo</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">handle</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">handle</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Call the handlers for the specified record.</span>
+
+<span class="sd">        This method is used for unpickled records received from a socket, as</span>
+<span class="sd">        well as those created locally. Logger-level filtering is applied.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">disabled</span><span class="p">:</span>
+            <span class="k">return</span>
+        <span class="n">maybe_record</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">maybe_record</span><span class="p">:</span>
+            <span class="k">return</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">maybe_record</span><span class="p">,</span> <span class="n">LogRecord</span><span class="p">):</span>
+            <span class="n">record</span> <span class="o">=</span> <span class="n">maybe_record</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">callHandlers</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">addHandler</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">hdlr</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Add the specified handler to this logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">_acquireLock</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">hdlr</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">handlers</span><span class="p">):</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">handlers</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">hdlr</span><span class="p">)</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="n">_releaseLock</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">removeHandler</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">hdlr</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Remove the specified handler from this logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">_acquireLock</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">hdlr</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">handlers</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">handlers</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">hdlr</span><span class="p">)</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="n">_releaseLock</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">hasHandlers</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        See if this logger has any handlers configured.</span>
+
+<span class="sd">        Loop through all handlers for this logger and its parents in the</span>
+<span class="sd">        logger hierarchy. Return True if a handler was found, else False.</span>
+<span class="sd">        Stop searching up the hierarchy whenever a logger with the &quot;propagate&quot;</span>
+<span class="sd">        attribute set to zero is found - that will be the last logger which</span>
+<span class="sd">        is checked for the existence of handlers.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">c</span> <span class="o">=</span> <span class="bp">self</span>
+        <span class="n">rv</span> <span class="o">=</span> <span class="kc">False</span>
+        <span class="k">while</span> <span class="n">c</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">handlers</span><span class="p">:</span>
+                <span class="n">rv</span> <span class="o">=</span> <span class="kc">True</span>
+                <span class="k">break</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">propagate</span><span class="p">:</span>
+                <span class="k">break</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">c</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">parent</span>
+        <span class="k">return</span> <span class="n">rv</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">callHandlers</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Pass a record to all relevant handlers.</span>
+
+<span class="sd">        Loop through all handlers for this logger and its parents in the</span>
+<span class="sd">        logger hierarchy. If no handler was found, output a one-off error</span>
+<span class="sd">        message to sys.stderr. Stop searching up the hierarchy whenever a</span>
+<span class="sd">        logger with the &quot;propagate&quot; attribute set to zero is found - that</span>
+<span class="sd">        will be the last logger whose handlers are called.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">c</span> <span class="o">=</span> <span class="bp">self</span>
+        <span class="n">found</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="k">while</span> <span class="n">c</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">hdlr</span> <span class="ow">in</span> <span class="n">c</span><span class="o">.</span><span class="n">handlers</span><span class="p">:</span>
+                <span class="n">found</span> <span class="o">=</span> <span class="n">found</span> <span class="o">+</span> <span class="mi">1</span>
+                <span class="k">if</span> <span class="n">record</span><span class="o">.</span><span class="n">levelno</span> <span class="o">&gt;=</span> <span class="n">hdlr</span><span class="o">.</span><span class="n">level</span><span class="p">:</span>
+                    <span class="n">hdlr</span><span class="o">.</span><span class="n">handle</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">propagate</span><span class="p">:</span>
+                <span class="n">c</span> <span class="o">=</span> <span class="kc">None</span>    <span class="c1">#break out</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">c</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">parent</span>
+        <span class="k">if</span> <span class="p">(</span><span class="n">found</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">lastResort</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">record</span><span class="o">.</span><span class="n">levelno</span> <span class="o">&gt;=</span> <span class="n">lastResort</span><span class="o">.</span><span class="n">level</span><span class="p">:</span>
+                    <span class="n">lastResort</span><span class="o">.</span><span class="n">handle</span><span class="p">(</span><span class="n">record</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="n">raiseExceptions</span> <span class="ow">and</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">emittedNoHandlerWarning</span><span class="p">:</span>
+                <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">&quot;No handlers could be found for logger&quot;</span>
+                                 <span class="s2">&quot; </span><span class="se">\&quot;</span><span class="si">%s</span><span class="se">\&quot;\n</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">emittedNoHandlerWarning</span> <span class="o">=</span> <span class="kc">True</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">getEffectiveLevel</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Get the effective level for this logger.</span>
+
+<span class="sd">        Loop through this logger and its parents in the logger hierarchy,</span>
+<span class="sd">        looking for a non-zero logging level. Return the first one found.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">logger</span> <span class="o">=</span> <span class="bp">self</span>
+        <span class="k">while</span> <span class="n">logger</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">logger</span><span class="o">.</span><span class="n">level</span><span class="p">:</span>
+                <span class="k">return</span> <span class="n">logger</span><span class="o">.</span><span class="n">level</span>
+            <span class="n">logger</span> <span class="o">=</span> <span class="n">logger</span><span class="o">.</span><span class="n">parent</span>
+        <span class="k">return</span> <span class="n">NOTSET</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">isEnabledFor</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Is this logger enabled for level &#39;level&#39;?</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">disabled</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">False</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cache</span><span class="p">[</span><span class="n">level</span><span class="p">]</span>
+        <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
+            <span class="n">_acquireLock</span><span class="p">()</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">disable</span> <span class="o">&gt;=</span> <span class="n">level</span><span class="p">:</span>
+                    <span class="n">is_enabled</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cache</span><span class="p">[</span><span class="n">level</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="n">is_enabled</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cache</span><span class="p">[</span><span class="n">level</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span>
+                        <span class="n">level</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">getEffectiveLevel</span><span class="p">()</span>
+                    <span class="p">)</span>
+            <span class="k">finally</span><span class="p">:</span>
+                <span class="n">_releaseLock</span><span class="p">()</span>
+            <span class="k">return</span> <span class="n">is_enabled</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">getChild</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">suffix</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Get a logger which is a descendant to this one.</span>
+
+<span class="sd">        This is a convenience method, such that</span>
+
+<span class="sd">        logging.getLogger(&#39;abc&#39;).getChild(&#39;def.ghi&#39;)</span>
+
+<span class="sd">        is the same as</span>
+
+<span class="sd">        logging.getLogger(&#39;abc.def.ghi&#39;)</span>
+
+<span class="sd">        It&#39;s useful, for example, when the parent logger is named using</span>
+<span class="sd">        __name__ rather than a literal string.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">self</span><span class="p">:</span>
+            <span class="n">suffix</span> <span class="o">=</span> <span class="s1">&#39;.&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">suffix</span><span class="p">))</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="n">suffix</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">getChildren</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+
+        <span class="k">def</span><span class="w"> </span><span class="nf">_hierlevel</span><span class="p">(</span><span class="n">logger</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">logger</span> <span class="ow">is</span> <span class="n">logger</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">root</span><span class="p">:</span>
+                <span class="k">return</span> <span class="mi">0</span>
+            <span class="k">return</span> <span class="mi">1</span> <span class="o">+</span> <span class="n">logger</span><span class="o">.</span><span class="n">name</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)</span>
+
+        <span class="n">d</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">loggerDict</span>
+        <span class="n">_acquireLock</span><span class="p">()</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="c1"># exclude PlaceHolders - the last check is to ensure that lower-level</span>
+            <span class="c1"># descendants aren&#39;t returned - if there are placeholders, a logger&#39;s</span>
+            <span class="c1"># parent field might point to a grandparent or ancestor thereof.</span>
+            <span class="k">return</span> <span class="nb">set</span><span class="p">(</span><span class="n">item</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">values</span><span class="p">()</span>
+                       <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">Logger</span><span class="p">)</span> <span class="ow">and</span> <span class="n">item</span><span class="o">.</span><span class="n">parent</span> <span class="ow">is</span> <span class="bp">self</span> <span class="ow">and</span>
+                       <span class="n">_hierlevel</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="o">+</span> <span class="n">_hierlevel</span><span class="p">(</span><span class="n">item</span><span class="o">.</span><span class="n">parent</span><span class="p">))</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="n">_releaseLock</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="n">getLevelName</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">getEffectiveLevel</span><span class="p">())</span>
+        <span class="k">return</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1"> </span><span class="si">%s</span><span class="s1"> (</span><span class="si">%s</span><span class="s1">)&gt;&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">level</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">__reduce__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">getLogger</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">self</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">pickle</span>
+            <span class="k">raise</span> <span class="n">pickle</span><span class="o">.</span><span class="n">PicklingError</span><span class="p">(</span><span class="s1">&#39;logger cannot be pickled&#39;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">getLogger</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">,)</span>
+
+
+<span class="k">class</span><span class="w"> </span><span class="nc">RootLogger</span><span class="p">(</span><span class="n">Logger</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    A root logger is not that different to any other logger, except that</span>
+<span class="sd">    it must have a logging level and there is only one instance of it in</span>
+<span class="sd">    the hierarchy.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize the logger with the name &quot;root&quot;.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">Logger</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s2">&quot;root&quot;</span><span class="p">,</span> <span class="n">level</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">__reduce__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">getLogger</span><span class="p">,</span> <span class="p">()</span>
+
+<span class="n">_loggerClass</span> <span class="o">=</span> <span class="n">Logger</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">LoggerAdapter</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    An adapter for loggers which makes it easier to specify contextual</span>
+<span class="sd">    information in logging output.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">logger</span><span class="p">,</span> <span class="n">extra</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize the adapter with a logger and a dict-like object which</span>
+<span class="sd">        provides contextual information. This constructor signature allows</span>
+<span class="sd">        easy stacking of LoggerAdapters, if so desired.</span>
+
+<span class="sd">        You can effectively pass keyword arguments as shown in the</span>
+<span class="sd">        following example:</span>
+
+<span class="sd">        adapter = LoggerAdapter(someLogger, dict(p1=v1, p2=&quot;v2&quot;))</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">logger</span> <span class="o">=</span> <span class="n">logger</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">extra</span> <span class="o">=</span> <span class="n">extra</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">process</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Process the logging message and keyword arguments passed in to</span>
+<span class="sd">        a logging call to insert contextual information. You can either</span>
+<span class="sd">        manipulate the message itself, the keyword args or both. Return</span>
+<span class="sd">        the message and kwargs modified (or not) to suit your needs.</span>
+
+<span class="sd">        Normally, you&#39;ll only need to override this one method in a</span>
+<span class="sd">        LoggerAdapter subclass for your specific needs.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">kwargs</span><span class="p">[</span><span class="s2">&quot;extra&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">extra</span>
+        <span class="k">return</span> <span class="n">msg</span><span class="p">,</span> <span class="n">kwargs</span>
+
+    <span class="c1">#</span>
+    <span class="c1"># Boilerplate convenience methods</span>
+    <span class="c1">#</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">debug</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Delegate a debug call to the underlying logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">DEBUG</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">info</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Delegate an info call to the underlying logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">INFO</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">warning</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Delegate a warning call to the underlying logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">WARNING</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">warn</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The &#39;warn&#39; method is deprecated, &quot;</span>
+            <span class="s2">&quot;use &#39;warning&#39; instead&quot;</span><span class="p">,</span> <span class="ne">DeprecationWarning</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Delegate an error call to the underlying logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">ERROR</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">exception</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Delegate an exception call to the underlying logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">ERROR</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="o">=</span><span class="n">exc_info</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">critical</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Delegate a critical call to the underlying logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">CRITICAL</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Delegate a log call to the underlying logger, after adding</span>
+<span class="sd">        contextual information from this adapter instance.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">isEnabledFor</span><span class="p">(</span><span class="n">level</span><span class="p">):</span>
+            <span class="n">msg</span><span class="p">,</span> <span class="n">kwargs</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">process</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="n">kwargs</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">isEnabledFor</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Is this logger enabled for level &#39;level&#39;?</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">isEnabledFor</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">setLevel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Set the specified level on the underlying logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">getEffectiveLevel</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Get the effective level for the underlying logger.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">getEffectiveLevel</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">hasHandlers</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        See if the underlying logger has any handlers.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">hasHandlers</span><span class="p">()</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_log</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Low-level log implementation, proxied to allow nested logger adapters.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">_log</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">manager</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">manager</span>
+
+    <span class="nd">@manager</span><span class="o">.</span><span class="n">setter</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">manager</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">value</span><span class="p">):</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">manager</span> <span class="o">=</span> <span class="n">value</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">name</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">name</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">logger</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">logger</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="n">getLevelName</span><span class="p">(</span><span class="n">logger</span><span class="o">.</span><span class="n">getEffectiveLevel</span><span class="p">())</span>
+        <span class="k">return</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1"> </span><span class="si">%s</span><span class="s1"> (</span><span class="si">%s</span><span class="s1">)&gt;&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span> <span class="n">logger</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">level</span><span class="p">)</span>
+
+    <span class="n">__class_getitem__</span> <span class="o">=</span> <span class="nb">classmethod</span><span class="p">(</span><span class="n">GenericAlias</span><span class="p">)</span>
+
+<span class="n">root</span> <span class="o">=</span> <span class="n">RootLogger</span><span class="p">(</span><span class="n">WARNING</span><span class="p">)</span>
+<span class="n">Logger</span><span class="o">.</span><span class="n">root</span> <span class="o">=</span> <span class="n">root</span>
+<span class="n">Logger</span><span class="o">.</span><span class="n">manager</span> <span class="o">=</span> <span class="n">Manager</span><span class="p">(</span><span class="n">Logger</span><span class="o">.</span><span class="n">root</span><span class="p">)</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1"># Configuration classes and functions</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">basicConfig</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Do basic configuration for the logging system.</span>
+
+<span class="sd">    This function does nothing if the root logger already has handlers</span>
+<span class="sd">    configured, unless the keyword argument *force* is set to ``True``.</span>
+<span class="sd">    It is a convenience method intended for use by simple scripts</span>
+<span class="sd">    to do one-shot configuration of the logging package.</span>
+
+<span class="sd">    The default behaviour is to create a StreamHandler which writes to</span>
+<span class="sd">    sys.stderr, set a formatter using the BASIC_FORMAT format string, and</span>
+<span class="sd">    add the handler to the root logger.</span>
+
+<span class="sd">    A number of optional keyword arguments may be specified, which can alter</span>
+<span class="sd">    the default behaviour.</span>
+
+<span class="sd">    filename  Specifies that a FileHandler be created, using the specified</span>
+<span class="sd">              filename, rather than a StreamHandler.</span>
+<span class="sd">    filemode  Specifies the mode to open the file, if filename is specified</span>
+<span class="sd">              (if filemode is unspecified, it defaults to &#39;a&#39;).</span>
+<span class="sd">    format    Use the specified format string for the handler.</span>
+<span class="sd">    datefmt   Use the specified date/time format.</span>
+<span class="sd">    style     If a format string is specified, use this to specify the</span>
+<span class="sd">              type of format string (possible values &#39;%&#39;, &#39;{&#39;, &#39;$&#39;, for</span>
+<span class="sd">              %-formatting, :meth:`str.format` and :class:`string.Template`</span>
+<span class="sd">              - defaults to &#39;%&#39;).</span>
+<span class="sd">    level     Set the root logger level to the specified level.</span>
+<span class="sd">    stream    Use the specified stream to initialize the StreamHandler. Note</span>
+<span class="sd">              that this argument is incompatible with &#39;filename&#39; - if both</span>
+<span class="sd">              are present, &#39;stream&#39; is ignored.</span>
+<span class="sd">    handlers  If specified, this should be an iterable of already created</span>
+<span class="sd">              handlers, which will be added to the root logger. Any handler</span>
+<span class="sd">              in the list which does not have a formatter assigned will be</span>
+<span class="sd">              assigned the formatter created in this function.</span>
+<span class="sd">    force     If this keyword  is specified as true, any existing handlers</span>
+<span class="sd">              attached to the root logger are removed and closed, before</span>
+<span class="sd">              carrying out the configuration as specified by the other</span>
+<span class="sd">              arguments.</span>
+<span class="sd">    encoding  If specified together with a filename, this encoding is passed to</span>
+<span class="sd">              the created FileHandler, causing it to be used when the file is</span>
+<span class="sd">              opened.</span>
+<span class="sd">    errors    If specified together with a filename, this value is passed to the</span>
+<span class="sd">              created FileHandler, causing it to be used when the file is</span>
+<span class="sd">              opened in text mode. If not specified, the default value is</span>
+<span class="sd">              `backslashreplace`.</span>
+
+<span class="sd">    Note that you could specify a stream created using open(filename, mode)</span>
+<span class="sd">    rather than passing the filename and mode in. However, it should be</span>
+<span class="sd">    remembered that StreamHandler does not close its stream (since it may be</span>
+<span class="sd">    using sys.stdout or sys.stderr), whereas FileHandler closes its stream</span>
+<span class="sd">    when the handler is closed.</span>
+
+<span class="sd">    .. versionchanged:: 3.2</span>
+<span class="sd">       Added the ``style`` parameter.</span>
+
+<span class="sd">    .. versionchanged:: 3.3</span>
+<span class="sd">       Added the ``handlers`` parameter. A ``ValueError`` is now thrown for</span>
+<span class="sd">       incompatible arguments (e.g. ``handlers`` specified together with</span>
+<span class="sd">       ``filename``/``filemode``, or ``filename``/``filemode`` specified</span>
+<span class="sd">       together with ``stream``, or ``handlers`` specified together with</span>
+<span class="sd">       ``stream``.</span>
+
+<span class="sd">    .. versionchanged:: 3.8</span>
+<span class="sd">       Added the ``force`` parameter.</span>
+
+<span class="sd">    .. versionchanged:: 3.9</span>
+<span class="sd">       Added the ``encoding`` and ``errors`` parameters.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Add thread safety in case someone mistakenly calls</span>
+    <span class="c1"># basicConfig() from multiple threads</span>
+    <span class="n">_acquireLock</span><span class="p">()</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">force</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s1">&#39;force&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
+        <span class="n">encoding</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s1">&#39;encoding&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+        <span class="n">errors</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s1">&#39;errors&#39;</span><span class="p">,</span> <span class="s1">&#39;backslashreplace&#39;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">force</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">root</span><span class="o">.</span><span class="n">handlers</span><span class="p">[:]:</span>
+                <span class="n">root</span><span class="o">.</span><span class="n">removeHandler</span><span class="p">(</span><span class="n">h</span><span class="p">)</span>
+                <span class="n">h</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">handlers</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">handlers</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s2">&quot;handlers&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">handlers</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="k">if</span> <span class="s2">&quot;stream&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span> <span class="ow">and</span> <span class="s2">&quot;filename&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+                    <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;&#39;stream&#39; and &#39;filename&#39; should not be &quot;</span>
+                                     <span class="s2">&quot;specified together&quot;</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="k">if</span> <span class="s2">&quot;stream&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span> <span class="ow">or</span> <span class="s2">&quot;filename&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+                    <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;&#39;stream&#39; or &#39;filename&#39; should not be &quot;</span>
+                                     <span class="s2">&quot;specified together with &#39;handlers&#39;&quot;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">handlers</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">filename</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s2">&quot;filename&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+                <span class="n">mode</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s2">&quot;filemode&quot;</span><span class="p">,</span> <span class="s1">&#39;a&#39;</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">filename</span><span class="p">:</span>
+                    <span class="k">if</span> <span class="s1">&#39;b&#39;</span> <span class="ow">in</span> <span class="n">mode</span><span class="p">:</span>
+                        <span class="n">errors</span> <span class="o">=</span> <span class="kc">None</span>
+                    <span class="k">else</span><span class="p">:</span>
+                        <span class="n">encoding</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">text_encoding</span><span class="p">(</span><span class="n">encoding</span><span class="p">)</span>
+                    <span class="n">h</span> <span class="o">=</span> <span class="n">FileHandler</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">mode</span><span class="p">,</span>
+                                    <span class="n">encoding</span><span class="o">=</span><span class="n">encoding</span><span class="p">,</span> <span class="n">errors</span><span class="o">=</span><span class="n">errors</span><span class="p">)</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="n">stream</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s2">&quot;stream&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+                    <span class="n">h</span> <span class="o">=</span> <span class="n">StreamHandler</span><span class="p">(</span><span class="n">stream</span><span class="p">)</span>
+                <span class="n">handlers</span> <span class="o">=</span> <span class="p">[</span><span class="n">h</span><span class="p">]</span>
+            <span class="n">dfs</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s2">&quot;datefmt&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+            <span class="n">style</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s2">&quot;style&quot;</span><span class="p">,</span> <span class="s1">&#39;%&#39;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">style</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">_STYLES</span><span class="p">:</span>
+                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Style must be one of: </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="s1">&#39;,&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
+                                 <span class="n">_STYLES</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
+            <span class="n">fs</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s2">&quot;format&quot;</span><span class="p">,</span> <span class="n">_STYLES</span><span class="p">[</span><span class="n">style</span><span class="p">][</span><span class="mi">1</span><span class="p">])</span>
+            <span class="n">fmt</span> <span class="o">=</span> <span class="n">Formatter</span><span class="p">(</span><span class="n">fs</span><span class="p">,</span> <span class="n">dfs</span><span class="p">,</span> <span class="n">style</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">handlers</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">h</span><span class="o">.</span><span class="n">formatter</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">h</span><span class="o">.</span><span class="n">setFormatter</span><span class="p">(</span><span class="n">fmt</span><span class="p">)</span>
+                <span class="n">root</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">h</span><span class="p">)</span>
+            <span class="n">level</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s2">&quot;level&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">level</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">root</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">kwargs</span><span class="p">:</span>
+                <span class="n">keys</span> <span class="o">=</span> <span class="s1">&#39;, &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Unrecognised argument(s): </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">keys</span><span class="p">)</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">_releaseLock</span><span class="p">()</span>
+
+<span class="c1">#---------------------------------------------------------------------------</span>
+<span class="c1"># Utility functions at module level.</span>
+<span class="c1"># Basically delegate everything to the root logger.</span>
+<span class="c1">#---------------------------------------------------------------------------</span>
+
+<div class="viewcode-block" id="getLogger">
+<a class="viewcode-back" href="../source/api/logging.html#scitex.logging.getLogger">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">getLogger</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Return a logger with the specified name, creating it if necessary.</span>
+
+<span class="sd">    If no name is specified, return the root logger.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">name</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="n">name</span> <span class="o">==</span> <span class="n">root</span><span class="o">.</span><span class="n">name</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">root</span>
+    <span class="k">return</span> <span class="n">Logger</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="n">name</span><span class="p">)</span></div>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">critical</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Log a message with severity &#39;CRITICAL&#39; on the root logger. If the logger</span>
+<span class="sd">    has no handlers, call basicConfig() to add a console handler with a</span>
+<span class="sd">    pre-defined format.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">handlers</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">basicConfig</span><span class="p">()</span>
+    <span class="n">root</span><span class="o">.</span><span class="n">critical</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">fatal</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Don&#39;t use this function, use critical() instead.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">critical</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">error</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Log a message with severity &#39;ERROR&#39; on the root logger. If the logger has</span>
+<span class="sd">    no handlers, call basicConfig() to add a console handler with a pre-defined</span>
+<span class="sd">    format.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">handlers</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">basicConfig</span><span class="p">()</span>
+    <span class="n">root</span><span class="o">.</span><span class="n">error</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">exception</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Log a message with severity &#39;ERROR&#39; on the root logger, with exception</span>
+<span class="sd">    information. If the logger has no handlers, basicConfig() is called to add</span>
+<span class="sd">    a console handler with a pre-defined format.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">error</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="n">exc_info</span><span class="o">=</span><span class="n">exc_info</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">warning</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Log a message with severity &#39;WARNING&#39; on the root logger. If the logger has</span>
+<span class="sd">    no handlers, call basicConfig() to add a console handler with a pre-defined</span>
+<span class="sd">    format.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">handlers</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">basicConfig</span><span class="p">()</span>
+    <span class="n">root</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">warn</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The &#39;warn&#39; function is deprecated, &quot;</span>
+        <span class="s2">&quot;use &#39;warning&#39; instead&quot;</span><span class="p">,</span> <span class="ne">DeprecationWarning</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
+    <span class="n">warning</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">info</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Log a message with severity &#39;INFO&#39; on the root logger. If the logger has</span>
+<span class="sd">    no handlers, call basicConfig() to add a console handler with a pre-defined</span>
+<span class="sd">    format.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">handlers</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">basicConfig</span><span class="p">()</span>
+    <span class="n">root</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">debug</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Log a message with severity &#39;DEBUG&#39; on the root logger. If the logger has</span>
+<span class="sd">    no handlers, call basicConfig() to add a console handler with a pre-defined</span>
+<span class="sd">    format.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">handlers</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">basicConfig</span><span class="p">()</span>
+    <span class="n">root</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">log</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Log &#39;msg % args&#39; with the integer severity &#39;level&#39; on the root logger. If</span>
+<span class="sd">    the logger has no handlers, call basicConfig() to add a console handler</span>
+<span class="sd">    with a pre-defined format.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">handlers</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">basicConfig</span><span class="p">()</span>
+    <span class="n">root</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="n">msg</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">disable</span><span class="p">(</span><span class="n">level</span><span class="o">=</span><span class="n">CRITICAL</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Disable all logging calls of severity &#39;level&#39; and below.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">root</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">disable</span> <span class="o">=</span> <span class="n">level</span>
+    <span class="n">root</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">_clear_cache</span><span class="p">()</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">shutdown</span><span class="p">(</span><span class="n">handlerList</span><span class="o">=</span><span class="n">_handlerList</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Perform any cleanup actions in the logging system (e.g. flushing</span>
+<span class="sd">    buffers).</span>
+
+<span class="sd">    Should be called at application exit.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">for</span> <span class="n">wr</span> <span class="ow">in</span> <span class="nb">reversed</span><span class="p">(</span><span class="n">handlerList</span><span class="p">[:]):</span>
+        <span class="c1">#errors might occur, for example, if files are locked</span>
+        <span class="c1">#we just ignore them if raiseExceptions is not set</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">h</span> <span class="o">=</span> <span class="n">wr</span><span class="p">()</span>
+            <span class="k">if</span> <span class="n">h</span><span class="p">:</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="n">h</span><span class="o">.</span><span class="n">acquire</span><span class="p">()</span>
+                    <span class="c1"># MemoryHandlers might not want to be flushed on close,</span>
+                    <span class="c1"># but circular imports prevent us scoping this to just</span>
+                    <span class="c1"># those handlers.  hence the default to True.</span>
+                    <span class="k">if</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">h</span><span class="p">,</span> <span class="s1">&#39;flushOnClose&#39;</span><span class="p">,</span> <span class="kc">True</span><span class="p">):</span>
+                        <span class="n">h</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
+                    <span class="n">h</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+                <span class="k">except</span> <span class="p">(</span><span class="ne">OSError</span><span class="p">,</span> <span class="ne">ValueError</span><span class="p">):</span>
+                    <span class="c1"># Ignore errors which might be caused</span>
+                    <span class="c1"># because handlers have been closed but</span>
+                    <span class="c1"># references to them are still around at</span>
+                    <span class="c1"># application exit.</span>
+                    <span class="k">pass</span>
+                <span class="k">finally</span><span class="p">:</span>
+                    <span class="n">h</span><span class="o">.</span><span class="n">release</span><span class="p">()</span>
+        <span class="k">except</span><span class="p">:</span> <span class="c1"># ignore everything, as we&#39;re shutting down</span>
+            <span class="k">if</span> <span class="n">raiseExceptions</span><span class="p">:</span>
+                <span class="k">raise</span>
+            <span class="c1">#else, swallow</span>
+
+<span class="c1">#Let&#39;s try and shutdown automatically on application exit...</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">atexit</span>
+<span class="n">atexit</span><span class="o">.</span><span class="n">register</span><span class="p">(</span><span class="n">shutdown</span><span class="p">)</span>
+
+<span class="c1"># Null handler</span>
+
+<span class="k">class</span><span class="w"> </span><span class="nc">NullHandler</span><span class="p">(</span><span class="n">Handler</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    This handler does nothing. It&#39;s intended to be used to avoid the</span>
+<span class="sd">    &quot;No handlers could be found for logger XXX&quot; one-off warning. This is</span>
+<span class="sd">    important for library code, which may contain code to log events. If a user</span>
+<span class="sd">    of the library does not configure logging, the one-off warning might be</span>
+<span class="sd">    produced; to avoid this, the library developer simply needs to instantiate</span>
+<span class="sd">    a NullHandler and add it to the top-level logger of the library module or</span>
+<span class="sd">    package.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">handle</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Stub.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">emit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">record</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Stub.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">createLock</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">lock</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_at_fork_reinit</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">pass</span>
+
+<span class="c1"># Warnings integration</span>
+
+<span class="n">_warnings_showwarning</span> <span class="o">=</span> <span class="kc">None</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_showwarning</span><span class="p">(</span><span class="n">message</span><span class="p">,</span> <span class="n">category</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">lineno</span><span class="p">,</span> <span class="n">file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">line</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Implementation of showwarnings which redirects to logging, which will first</span>
+<span class="sd">    check to see if the file parameter is None. If a file is specified, it will</span>
+<span class="sd">    delegate to the original warnings implementation of showwarning. Otherwise,</span>
+<span class="sd">    it will call warnings.formatwarning and will log the resulting string to a</span>
+<span class="sd">    warnings logger named &quot;py.warnings&quot; with level logging.WARNING.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">file</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">_warnings_showwarning</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">_warnings_showwarning</span><span class="p">(</span><span class="n">message</span><span class="p">,</span> <span class="n">category</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">lineno</span><span class="p">,</span> <span class="n">file</span><span class="p">,</span> <span class="n">line</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">s</span> <span class="o">=</span> <span class="n">warnings</span><span class="o">.</span><span class="n">formatwarning</span><span class="p">(</span><span class="n">message</span><span class="p">,</span> <span class="n">category</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">lineno</span><span class="p">,</span> <span class="n">line</span><span class="p">)</span>
+        <span class="n">logger</span> <span class="o">=</span> <span class="n">getLogger</span><span class="p">(</span><span class="s2">&quot;py.warnings&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">logger</span><span class="o">.</span><span class="n">handlers</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">NullHandler</span><span class="p">())</span>
+        <span class="c1"># bpo-46557: Log str(s) as msg instead of logger.warning(&quot;%s&quot;, s)</span>
+        <span class="c1"># since some log aggregation tools group logs by the msg arg</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">s</span><span class="p">))</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">captureWarnings</span><span class="p">(</span><span class="n">capture</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    If capture is true, redirect all warnings to the logging package.</span>
+<span class="sd">    If capture is False, ensure that warnings are not redirected to logging</span>
+<span class="sd">    but to their original destinations.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_warnings_showwarning</span>
+    <span class="k">if</span> <span class="n">capture</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">_warnings_showwarning</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">_warnings_showwarning</span> <span class="o">=</span> <span class="n">warnings</span><span class="o">.</span><span class="n">showwarning</span>
+            <span class="n">warnings</span><span class="o">.</span><span class="n">showwarning</span> <span class="o">=</span> <span class="n">_showwarning</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">_warnings_showwarning</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">warnings</span><span class="o">.</span><span class="n">showwarning</span> <span class="o">=</span> <span class="n">_warnings_showwarning</span>
+            <span class="n">_warnings_showwarning</span> <span class="o">=</span> <span class="kc">None</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex/cli.html b/src/scitex/_sphinx_html/_modules/scitex/cli.html
new file mode 100644
index 000000000..515227685
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex/cli.html
@@ -0,0 +1,888 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.cli &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
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+             
+  <h1>Source code for scitex.cli</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">SciTeX CLI - Command-line interface for SciTeX platform</span>
+
+<span class="sd">Provides unified interface for:</span>
+<span class="sd">- Cloud operations (wraps tea for Gitea)</span>
+<span class="sd">- Scholar operations (Django API)</span>
+<span class="sd">- Code operations (Django API)</span>
+<span class="sd">- Viz operations (Django API)</span>
+<span class="sd">- Writer operations (Django API)</span>
+<span class="sd">- Project operations (integrated workflows)</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">click</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.main</span><span class="w"> </span><span class="kn">import</span> <span class="n">cli</span>
+
+
+<div class="viewcode-block" id="print_help_recursive">
+<a class="viewcode-back" href="../../source/api/cli.html#scitex.cli.print_help_recursive">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">print_help_recursive</span><span class="p">(</span><span class="n">ctx</span><span class="p">,</span> <span class="n">group</span><span class="p">:</span> <span class="n">click</span><span class="o">.</span><span class="n">Group</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Print help for a group and all its subcommands.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        ctx: The click context</span>
+<span class="sd">        group: The click group to print help for</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Create a fake parent context to show correct command path in Usage</span>
+    <span class="n">fake_parent</span> <span class="o">=</span> <span class="n">click</span><span class="o">.</span><span class="n">Context</span><span class="p">(</span><span class="n">click</span><span class="o">.</span><span class="n">Group</span><span class="p">(),</span> <span class="n">info_name</span><span class="o">=</span><span class="s2">&quot;scitex&quot;</span><span class="p">)</span>
+    <span class="n">parent_ctx</span> <span class="o">=</span> <span class="n">click</span><span class="o">.</span><span class="n">Context</span><span class="p">(</span><span class="n">group</span><span class="p">,</span> <span class="n">info_name</span><span class="o">=</span><span class="n">group</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">fake_parent</span><span class="p">)</span>
+
+    <span class="n">click</span><span class="o">.</span><span class="n">secho</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;━━━ scitex </span><span class="si">{</span><span class="n">group</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2"> ━━━&quot;</span><span class="p">,</span> <span class="n">fg</span><span class="o">=</span><span class="s2">&quot;cyan&quot;</span><span class="p">,</span> <span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+    <span class="n">click</span><span class="o">.</span><span class="n">echo</span><span class="p">(</span><span class="n">group</span><span class="o">.</span><span class="n">get_help</span><span class="p">(</span><span class="n">parent_ctx</span><span class="p">))</span>
+
+    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">group</span><span class="o">.</span><span class="n">list_commands</span><span class="p">(</span><span class="n">ctx</span><span class="p">)</span> <span class="ow">or</span> <span class="p">[]):</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="n">group</span><span class="o">.</span><span class="n">get_command</span><span class="p">(</span><span class="n">ctx</span><span class="p">,</span> <span class="n">name</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">cmd</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="n">click</span><span class="o">.</span><span class="n">echo</span><span class="p">()</span>
+        <span class="n">click</span><span class="o">.</span><span class="n">secho</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;━━━ scitex </span><span class="si">{</span><span class="n">group</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2"> ━━━&quot;</span><span class="p">,</span> <span class="n">fg</span><span class="o">=</span><span class="s2">&quot;cyan&quot;</span><span class="p">,</span> <span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="k">with</span> <span class="n">click</span><span class="o">.</span><span class="n">Context</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">info_name</span><span class="o">=</span><span class="n">name</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">parent_ctx</span><span class="p">)</span> <span class="k">as</span> <span class="n">sub_ctx</span><span class="p">:</span>
+            <span class="n">click</span><span class="o">.</span><span class="n">echo</span><span class="p">(</span><span class="n">cmd</span><span class="o">.</span><span class="n">get_help</span><span class="p">(</span><span class="n">sub_ctx</span><span class="p">))</span>
+            <span class="c1"># Handle nested subgroups</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">click</span><span class="o">.</span><span class="n">Group</span><span class="p">):</span>
+                <span class="k">for</span> <span class="n">sub_name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">cmd</span><span class="o">.</span><span class="n">list_commands</span><span class="p">(</span><span class="n">sub_ctx</span><span class="p">)</span> <span class="ow">or</span> <span class="p">[]):</span>
+                    <span class="n">sub_cmd</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">get_command</span><span class="p">(</span><span class="n">sub_ctx</span><span class="p">,</span> <span class="n">sub_name</span><span class="p">)</span>
+                    <span class="k">if</span> <span class="n">sub_cmd</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+                        <span class="k">continue</span>
+                    <span class="n">click</span><span class="o">.</span><span class="n">echo</span><span class="p">()</span>
+                    <span class="n">click</span><span class="o">.</span><span class="n">secho</span><span class="p">(</span>
+                        <span class="sa">f</span><span class="s2">&quot;━━━ scitex </span><span class="si">{</span><span class="n">group</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">sub_name</span><span class="si">}</span><span class="s2"> ━━━&quot;</span><span class="p">,</span>
+                        <span class="n">fg</span><span class="o">=</span><span class="s2">&quot;cyan&quot;</span><span class="p">,</span>
+                        <span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                    <span class="p">)</span>
+                    <span class="k">with</span> <span class="n">click</span><span class="o">.</span><span class="n">Context</span><span class="p">(</span>
+                        <span class="n">sub_cmd</span><span class="p">,</span> <span class="n">info_name</span><span class="o">=</span><span class="n">sub_name</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">sub_ctx</span>
+                    <span class="p">)</span> <span class="k">as</span> <span class="n">sub_sub_ctx</span><span class="p">:</span>
+                        <span class="n">click</span><span class="o">.</span><span class="n">echo</span><span class="p">(</span><span class="n">sub_cmd</span><span class="o">.</span><span class="n">get_help</span><span class="p">(</span><span class="n">sub_sub_ctx</span><span class="p">))</span></div>
+
+
+
+<div class="viewcode-block" id="format_python_signature">
+<a class="viewcode-back" href="../../source/api/cli.html#scitex.cli.format_python_signature">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">format_python_signature</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">multiline</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span> <span class="n">indent</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;  &quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Format Python function signature with colors matching mcp list-tools.</span>
+
+<span class="sd">    Returns (name_colored, signature_colored)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">inspect</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">sig</span> <span class="o">=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">signature</span><span class="p">(</span><span class="n">func</span><span class="p">)</span>
+    <span class="k">except</span> <span class="p">(</span><span class="ne">ValueError</span><span class="p">,</span> <span class="ne">TypeError</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">func</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span> <span class="n">fg</span><span class="o">=</span><span class="s2">&quot;green&quot;</span><span class="p">,</span> <span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">),</span> <span class="s2">&quot;&quot;</span>
+
+    <span class="n">params</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">param</span> <span class="ow">in</span> <span class="n">sig</span><span class="o">.</span><span class="n">parameters</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="c1"># Get type annotation</span>
+        <span class="k">if</span> <span class="n">param</span><span class="o">.</span><span class="n">annotation</span> <span class="o">!=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">Parameter</span><span class="o">.</span><span class="n">empty</span><span class="p">:</span>
+            <span class="n">ann</span> <span class="o">=</span> <span class="n">param</span><span class="o">.</span><span class="n">annotation</span>
+            <span class="n">type_str</span> <span class="o">=</span> <span class="n">ann</span><span class="o">.</span><span class="vm">__name__</span> <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">ann</span><span class="p">,</span> <span class="s2">&quot;__name__&quot;</span><span class="p">)</span> <span class="k">else</span> <span class="nb">str</span><span class="p">(</span><span class="n">ann</span><span class="p">)</span>
+            <span class="n">type_str</span> <span class="o">=</span> <span class="n">type_str</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;typing.&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">type_str</span> <span class="o">=</span> <span class="kc">None</span>
+
+        <span class="c1"># Get default value</span>
+        <span class="k">if</span> <span class="n">param</span><span class="o">.</span><span class="n">default</span> <span class="o">!=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">Parameter</span><span class="o">.</span><span class="n">empty</span><span class="p">:</span>
+            <span class="n">default</span> <span class="o">=</span> <span class="n">param</span><span class="o">.</span><span class="n">default</span>
+            <span class="n">def_str</span> <span class="o">=</span> <span class="nb">repr</span><span class="p">(</span><span class="n">default</span><span class="p">)</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">repr</span><span class="p">(</span><span class="n">default</span><span class="p">))</span> <span class="o">&lt;</span> <span class="mi">20</span> <span class="k">else</span> <span class="s2">&quot;...&quot;</span>
+            <span class="k">if</span> <span class="n">type_str</span><span class="p">:</span>
+                <span class="n">p</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">name</span><span class="p">,</span><span class="w"> </span><span class="n">fg</span><span class="o">=</span><span class="s1">&#39;white&#39;</span><span class="p">,</span><span class="w"> </span><span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">type_str</span><span class="p">,</span><span class="w"> </span><span class="n">fg</span><span class="o">=</span><span class="s1">&#39;cyan&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2"> = </span><span class="si">{</span><span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">def_str</span><span class="p">,</span><span class="w"> </span><span class="n">fg</span><span class="o">=</span><span class="s1">&#39;yellow&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">p</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">name</span><span class="p">,</span><span class="w"> </span><span class="n">fg</span><span class="o">=</span><span class="s1">&#39;white&#39;</span><span class="p">,</span><span class="w"> </span><span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span><span class="si">}</span><span class="s2"> = </span><span class="si">{</span><span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">def_str</span><span class="p">,</span><span class="w"> </span><span class="n">fg</span><span class="o">=</span><span class="s1">&#39;yellow&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">type_str</span><span class="p">:</span>
+                <span class="n">p</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">name</span><span class="p">,</span><span class="w"> </span><span class="n">fg</span><span class="o">=</span><span class="s1">&#39;white&#39;</span><span class="p">,</span><span class="w"> </span><span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">type_str</span><span class="p">,</span><span class="w"> </span><span class="n">fg</span><span class="o">=</span><span class="s1">&#39;cyan&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">p</span> <span class="o">=</span> <span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">fg</span><span class="o">=</span><span class="s2">&quot;white&quot;</span><span class="p">,</span> <span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="n">params</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">p</span><span class="p">)</span>
+
+    <span class="c1"># Return type</span>
+    <span class="n">ret_str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">sig</span><span class="o">.</span><span class="n">return_annotation</span> <span class="o">!=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">Parameter</span><span class="o">.</span><span class="n">empty</span><span class="p">:</span>
+        <span class="n">ret</span> <span class="o">=</span> <span class="n">sig</span><span class="o">.</span><span class="n">return_annotation</span>
+        <span class="n">ret_name</span> <span class="o">=</span> <span class="n">ret</span><span class="o">.</span><span class="vm">__name__</span> <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">ret</span><span class="p">,</span> <span class="s2">&quot;__name__&quot;</span><span class="p">)</span> <span class="k">else</span> <span class="nb">str</span><span class="p">(</span><span class="n">ret</span><span class="p">)</span>
+        <span class="n">ret_name</span> <span class="o">=</span> <span class="n">ret_name</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;typing.&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="n">ret_str</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot; -&gt; </span><span class="si">{</span><span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">ret_name</span><span class="p">,</span><span class="w"> </span><span class="n">fg</span><span class="o">=</span><span class="s1">&#39;magenta&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+
+    <span class="n">name_s</span> <span class="o">=</span> <span class="n">click</span><span class="o">.</span><span class="n">style</span><span class="p">(</span><span class="n">func</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span> <span class="n">fg</span><span class="o">=</span><span class="s2">&quot;green&quot;</span><span class="p">,</span> <span class="n">bold</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">multiline</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">params</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">2</span><span class="p">:</span>
+        <span class="n">param_indent</span> <span class="o">=</span> <span class="n">indent</span> <span class="o">+</span> <span class="s2">&quot;    &quot;</span>
+        <span class="n">params_str</span> <span class="o">=</span> <span class="s2">&quot;,</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">param_indent</span><span class="si">}{</span><span class="n">p</span><span class="si">}</span><span class="s2">&quot;</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">params</span><span class="p">)</span>
+        <span class="n">sig_s</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;(</span><span class="se">\n</span><span class="si">{</span><span class="n">params_str</span><span class="si">}</span><span class="se">\n</span><span class="si">{</span><span class="n">indent</span><span class="si">}</span><span class="s2">)</span><span class="si">{</span><span class="n">ret_str</span><span class="si">}</span><span class="s2">&quot;</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">sig_s</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;(</span><span class="si">{</span><span class="s1">&#39;, &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">params</span><span class="p">)</span><span class="si">}</span><span class="s2">)</span><span class="si">{</span><span class="n">ret_str</span><span class="si">}</span><span class="s2">&quot;</span>
+
+    <span class="k">return</span> <span class="n">name_s</span><span class="p">,</span> <span class="n">sig_s</span></div>
+
+
+
+<div class="viewcode-block" id="group_to_json">
+<a class="viewcode-back" href="../../source/api/cli.html#scitex.cli.group_to_json">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">group_to_json</span><span class="p">(</span><span class="n">ctx</span><span class="p">,</span> <span class="n">group</span><span class="p">:</span> <span class="n">click</span><span class="o">.</span><span class="n">Group</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Output a group&#39;s subcommands as Result JSON and exit.</span>
+
+<span class="sd">    Provides ``--json`` behavior for group-level commands, listing</span>
+<span class="sd">    available subcommands with their short help text.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_dev</span><span class="w"> </span><span class="kn">import</span> <span class="n">Result</span>
+
+    <span class="n">cmds</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">group</span><span class="o">.</span><span class="n">list_commands</span><span class="p">(</span><span class="n">ctx</span><span class="p">)</span> <span class="ow">or</span> <span class="p">[]):</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="n">group</span><span class="o">.</span><span class="n">get_command</span><span class="p">(</span><span class="n">ctx</span><span class="p">,</span> <span class="n">name</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">cmd</span><span class="p">:</span>
+            <span class="n">cmds</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">get_short_help_str</span><span class="p">(</span><span class="n">limit</span><span class="o">=</span><span class="mi">150</span><span class="p">)</span>
+    <span class="n">click</span><span class="o">.</span><span class="n">echo</span><span class="p">(</span><span class="n">Result</span><span class="p">(</span><span class="n">success</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;commands&quot;</span><span class="p">:</span> <span class="n">cmds</span><span class="p">})</span><span class="o">.</span><span class="n">to_json</span><span class="p">())</span>
+    <span class="n">ctx</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="help_recursive_to_json">
+<a class="viewcode-back" href="../../source/api/cli.html#scitex.cli.help_recursive_to_json">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">help_recursive_to_json</span><span class="p">(</span><span class="n">ctx</span><span class="p">,</span> <span class="n">group</span><span class="p">:</span> <span class="n">click</span><span class="o">.</span><span class="n">Group</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Output recursive help for a group and all subcommands as Result JSON.</span>
+
+<span class="sd">    Walks the entire command tree and outputs structured JSON with</span>
+<span class="sd">    command names, help text, options, and nested subcommands.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_dev</span><span class="w"> </span><span class="kn">import</span> <span class="n">Result</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_cmd_to_dict</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">parent_ctx</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Convert a Click command to a dict with options and help.&quot;&quot;&quot;</span>
+        <span class="n">info</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="s2">&quot;help&quot;</span><span class="p">:</span> <span class="n">cmd</span><span class="o">.</span><span class="n">get_short_help_str</span><span class="p">(</span><span class="n">limit</span><span class="o">=</span><span class="mi">300</span><span class="p">),</span>
+        <span class="p">}</span>
+        <span class="c1"># Collect options (exclude --help)</span>
+        <span class="n">params</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">param</span> <span class="ow">in</span> <span class="n">cmd</span><span class="o">.</span><span class="n">params</span><span class="p">:</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">param</span><span class="p">,</span> <span class="n">click</span><span class="o">.</span><span class="n">Option</span><span class="p">)</span> <span class="ow">and</span> <span class="n">param</span><span class="o">.</span><span class="n">name</span> <span class="o">!=</span> <span class="s2">&quot;help&quot;</span><span class="p">:</span>
+                <span class="n">p</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">param</span><span class="o">.</span><span class="n">name</span><span class="p">,</span>
+                    <span class="s2">&quot;flags&quot;</span><span class="p">:</span> <span class="nb">list</span><span class="p">(</span><span class="n">param</span><span class="o">.</span><span class="n">opts</span><span class="p">),</span>
+                    <span class="s2">&quot;required&quot;</span><span class="p">:</span> <span class="n">param</span><span class="o">.</span><span class="n">required</span><span class="p">,</span>
+                    <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="n">param</span><span class="o">.</span><span class="n">type</span><span class="o">.</span><span class="n">name</span>
+                    <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">param</span><span class="o">.</span><span class="n">type</span><span class="p">,</span> <span class="s2">&quot;name&quot;</span><span class="p">)</span>
+                    <span class="k">else</span> <span class="nb">str</span><span class="p">(</span><span class="n">param</span><span class="o">.</span><span class="n">type</span><span class="p">),</span>
+                <span class="p">}</span>
+                <span class="k">if</span> <span class="n">param</span><span class="o">.</span><span class="n">default</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">p</span><span class="p">[</span><span class="s2">&quot;default&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">param</span><span class="o">.</span><span class="n">default</span>
+                <span class="k">if</span> <span class="n">param</span><span class="o">.</span><span class="n">help</span><span class="p">:</span>
+                    <span class="n">p</span><span class="p">[</span><span class="s2">&quot;help&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">param</span><span class="o">.</span><span class="n">help</span>
+                <span class="n">params</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">p</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">param</span><span class="p">,</span> <span class="n">click</span><span class="o">.</span><span class="n">Argument</span><span class="p">):</span>
+                <span class="n">p</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">param</span><span class="o">.</span><span class="n">name</span><span class="p">,</span>
+                    <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;argument&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;required&quot;</span><span class="p">:</span> <span class="n">param</span><span class="o">.</span><span class="n">required</span><span class="p">,</span>
+                <span class="p">}</span>
+                <span class="n">params</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">p</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">params</span><span class="p">:</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;params&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">params</span>
+
+        <span class="c1"># Recurse into subgroups</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">click</span><span class="o">.</span><span class="n">MultiCommand</span><span class="p">):</span>
+            <span class="n">subs</span> <span class="o">=</span> <span class="p">{}</span>
+            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">cmd</span><span class="o">.</span><span class="n">list_commands</span><span class="p">(</span><span class="n">parent_ctx</span><span class="p">)</span> <span class="ow">or</span> <span class="p">[]):</span>
+                <span class="n">sub_cmd</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">get_command</span><span class="p">(</span><span class="n">parent_ctx</span><span class="p">,</span> <span class="n">name</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">sub_cmd</span><span class="p">:</span>
+                    <span class="k">with</span> <span class="n">click</span><span class="o">.</span><span class="n">Context</span><span class="p">(</span>
+                        <span class="n">sub_cmd</span><span class="p">,</span> <span class="n">info_name</span><span class="o">=</span><span class="n">name</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">parent_ctx</span>
+                    <span class="p">)</span> <span class="k">as</span> <span class="n">sub_ctx</span><span class="p">:</span>
+                        <span class="n">subs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_cmd_to_dict</span><span class="p">(</span><span class="n">sub_cmd</span><span class="p">,</span> <span class="n">sub_ctx</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">subs</span><span class="p">:</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;subcommands&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">subs</span>
+        <span class="k">return</span> <span class="n">info</span>
+
+    <span class="c1"># Build the full tree</span>
+    <span class="n">group_name</span> <span class="o">=</span> <span class="n">group</span><span class="o">.</span><span class="n">name</span> <span class="ow">or</span> <span class="s2">&quot;cli&quot;</span>
+    <span class="n">fake_parent</span> <span class="o">=</span> <span class="n">click</span><span class="o">.</span><span class="n">Context</span><span class="p">(</span><span class="n">click</span><span class="o">.</span><span class="n">Group</span><span class="p">(),</span> <span class="n">info_name</span><span class="o">=</span><span class="s2">&quot;scitex&quot;</span><span class="p">)</span>
+    <span class="n">parent_ctx</span> <span class="o">=</span> <span class="n">click</span><span class="o">.</span><span class="n">Context</span><span class="p">(</span><span class="n">group</span><span class="p">,</span> <span class="n">info_name</span><span class="o">=</span><span class="n">group_name</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">fake_parent</span><span class="p">)</span>
+
+    <span class="n">tree</span> <span class="o">=</span> <span class="n">_cmd_to_dict</span><span class="p">(</span><span class="n">group</span><span class="p">,</span> <span class="n">parent_ctx</span><span class="p">)</span>
+    <span class="n">tree</span><span class="p">[</span><span class="s2">&quot;name&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;scitex </span><span class="si">{</span><span class="n">group_name</span><span class="si">}</span><span class="s2">&quot;</span> <span class="k">if</span> <span class="n">group_name</span> <span class="o">!=</span> <span class="s2">&quot;cli&quot;</span> <span class="k">else</span> <span class="s2">&quot;scitex&quot;</span>
+
+    <span class="n">click</span><span class="o">.</span><span class="n">echo</span><span class="p">(</span><span class="n">Result</span><span class="p">(</span><span class="n">success</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="n">tree</span><span class="p">)</span><span class="o">.</span><span class="n">to_json</span><span class="p">())</span>
+    <span class="n">ctx</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;cli&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;print_help_recursive&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;format_python_signature&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;group_to_json&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;help_recursive_to_json&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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+   
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+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_app/_files_api.html b/src/scitex/_sphinx_html/_modules/scitex_app/_files_api.html
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+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_app._files_api</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_app._files_api</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-05-12</span>
+<span class="c1"># File: scitex_app/_files_api.py</span>
+
+<span class="sd">&quot;&quot;&quot;Flat module-level wrappers around `FilesBackend` operations.</span>
+
+<span class="sd">These mirror the package&#39;s MCP tool surface (`app_read_file`,</span>
+<span class="sd">`app_write_file`, …) so users have a single-call Python API that</span>
+<span class="sd">matches what MCP exposes — closing the API↔MCP parity check</span>
+<span class="sd">(§6) and giving users a more discoverable surface for one-off</span>
+<span class="sd">file operations than `get_files(root).read(path)`.</span>
+
+<span class="sd">Each wrapper resolves the backend via :func:`scitex_app.sdk.get_files`</span>
+<span class="sd">on every call, so it honours the same auto-detection rules</span>
+<span class="sd">(``SCITEX_API_TOKEN`` for cloud, filesystem otherwise) and stays</span>
+<span class="sd">in lock-step with whatever backend the caller has registered.</span>
+
+<span class="sd">Heavy file shims (binary handling, traversal safety) live on the</span>
+<span class="sd">backend; this module is intentionally thin.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.sdk</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_files</span>
+
+
+<div class="viewcode-block" id="read_file">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.read_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">read_file</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">root</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span>
+    <span class="n">binary</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">bytes</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Read a single file via the resolved :class:`FilesBackend`.</span>
+
+<span class="sd">    Equivalent to ``get_files(root).read(path, binary=binary)``;</span>
+<span class="sd">    mirrors the ``app_read_file`` MCP tool.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">get_files</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">binary</span><span class="o">=</span><span class="n">binary</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="write_file">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.write_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">write_file</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">content</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">bytes</span><span class="p">],</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">root</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Write a file via the resolved :class:`FilesBackend`.</span>
+
+<span class="sd">    Mirrors the ``app_write_file`` MCP tool.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">get_files</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">content</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="list_files">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.list_files">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">list_files</span><span class="p">(</span>
+    <span class="n">directory</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">root</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span>
+    <span class="n">extensions</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;List file paths under *directory*.</span>
+
+<span class="sd">    Mirrors the ``app_list_files`` MCP tool.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">get_files</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">list</span><span class="p">(</span><span class="n">directory</span><span class="p">,</span> <span class="n">extensions</span><span class="o">=</span><span class="n">extensions</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="file_exists">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.file_exists">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">file_exists</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="o">*</span><span class="p">,</span> <span class="n">root</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return whether *path* exists in the resolved backend.</span>
+
+<span class="sd">    Mirrors the ``app_file_exists`` MCP tool.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">get_files</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">path</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="delete_file">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.delete_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">delete_file</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="o">*</span><span class="p">,</span> <span class="n">root</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Delete *path* in the resolved backend.</span>
+
+<span class="sd">    Mirrors the ``app_delete_file`` MCP tool.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">get_files</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">path</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="copy_file">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.copy_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">copy_file</span><span class="p">(</span>
+    <span class="n">src_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">dest_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">root</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Copy *src_path* to *dest_path* within the resolved backend.</span>
+
+<span class="sd">    Mirrors the ``app_copy_file`` MCP tool.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">get_files</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">dest_path</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="rename_file">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.rename_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">rename_file</span><span class="p">(</span>
+    <span class="n">old_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">new_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">root</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Rename *old_path* to *new_path* within the resolved backend.</span>
+
+<span class="sd">    Mirrors the ``app_rename_file`` MCP tool.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">get_files</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">rename</span><span class="p">(</span><span class="n">old_path</span><span class="p">,</span> <span class="n">new_path</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="scaffold">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.scaffold">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">scaffold</span><span class="p">(</span>
+    <span class="n">target_dir</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">name</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">label</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">icon</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;fas fa-puzzle-piece&quot;</span><span class="p">,</span>
+    <span class="n">description</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">,</span>
+    <span class="n">frontend</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;html&quot;</span><span class="p">,</span>
+    <span class="n">overwrite</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Path</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate a new SciTeX workspace app skeleton.</span>
+
+<span class="sd">    Mirrors the ``app_scaffold`` MCP tool. Auto-appends ``_app`` /</span>
+<span class="sd">    ``-app`` to *name* (matching the MCP tool&#39;s behaviour) so</span>
+<span class="sd">    Python and MCP callers see the same result for the same inputs.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">.appmaker</span><span class="w"> </span><span class="kn">import</span> <span class="n">init_app</span>
+
+    <span class="n">target</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">target_dir</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+    <span class="n">app_name</span> <span class="o">=</span> <span class="n">name</span> <span class="ow">or</span> <span class="n">target</span><span class="o">.</span><span class="n">name</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">app_name</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;_app&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">app_name</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;-app&quot;</span><span class="p">)):</span>
+        <span class="n">sep</span> <span class="o">=</span> <span class="s2">&quot;-&quot;</span> <span class="k">if</span> <span class="s2">&quot;-&quot;</span> <span class="ow">in</span> <span class="n">app_name</span> <span class="k">else</span> <span class="s2">&quot;_&quot;</span>
+        <span class="n">app_name</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">app_name</span><span class="si">}{</span><span class="n">sep</span><span class="si">}</span><span class="s2">app&quot;</span>
+
+    <span class="k">return</span> <span class="n">init_app</span><span class="p">(</span>
+        <span class="n">target_dir</span><span class="o">=</span><span class="n">target</span><span class="p">,</span>
+        <span class="n">name</span><span class="o">=</span><span class="n">app_name</span><span class="p">,</span>
+        <span class="n">label</span><span class="o">=</span><span class="n">label</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span><span class="p">,</span>
+        <span class="n">icon</span><span class="o">=</span><span class="n">icon</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">,</span>
+        <span class="n">overwrite</span><span class="o">=</span><span class="n">overwrite</span><span class="p">,</span>
+        <span class="n">frontend_type</span><span class="o">=</span><span class="n">frontend</span><span class="p">,</span>
+    <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="validate">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.validate">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">validate</span><span class="p">(</span><span class="n">app_dir</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Audit a SciTeX app for cloud-submission readiness.</span>
+
+<span class="sd">    Mirrors the ``app_validate`` MCP tool. Returns the list of</span>
+<span class="sd">    errors (empty when the app is ready).</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">.appmaker</span><span class="w"> </span><span class="kn">import</span> <span class="n">validate</span> <span class="k">as</span> <span class="n">_validate</span>
+
+    <span class="k">return</span> <span class="n">_validate</span><span class="p">(</span><span class="n">app_dir</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;read_file&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;write_file&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;list_files&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;file_exists&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;delete_file&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;copy_file&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;rename_file&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;scaffold&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;validate&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_app/sdk.html b/src/scitex/_sphinx_html/_modules/scitex_app/sdk.html
new file mode 100644
index 000000000..70fa16bca
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_app/sdk.html
@@ -0,0 +1,815 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_app.sdk &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_app.sdk</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_app.sdk</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-03-13</span>
+<span class="c1"># File: scitex_app/sdk/__init__.py</span>
+
+<span class="sd">&quot;&quot;&quot;App SDK — write-once interface for local + cloud SciTeX apps.</span>
+
+<span class="sd">Usage (standalone / local):</span>
+<span class="sd">    from scitex_app.sdk import get_files</span>
+
+<span class="sd">    files = get_files(&quot;./my_project&quot;)</span>
+<span class="sd">    content = files.read(&quot;recipes/my_recipe.yaml&quot;)</span>
+<span class="sd">    files.write(&quot;output/result.png&quot;, png_bytes)</span>
+
+<span class="sd">Usage (cloud, auto-detected via SCITEX_API_TOKEN):</span>
+<span class="sd">    files = get_files()  # routes through cloud REST API</span>
+
+<span class="sd">Usage (remote local, via SCITEX_API_URL):</span>
+<span class="sd">    import os</span>
+<span class="sd">    os.environ[&quot;SCITEX_API_TOKEN&quot;] = &quot;your-token&quot;</span>
+<span class="sd">    os.environ[&quot;SCITEX_API_URL&quot;] = &quot;https://scitex.ai&quot;</span>
+<span class="sd">    files = get_files()  # routes to remote cloud</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Callable</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._protocol</span><span class="w"> </span><span class="kn">import</span> <span class="n">FilesBackend</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._tree</span><span class="w"> </span><span class="kn">import</span> <span class="n">build_tree</span>
+
+<span class="c1"># Backend registry: name -&gt; factory callable</span>
+<span class="n">_registry</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Callable</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="n">FilesBackend</span><span class="p">]]</span> <span class="o">=</span> <span class="p">{}</span>
+
+
+<div class="viewcode-block" id="register_backend">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.register_backend">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">register_backend</span><span class="p">(</span><span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">factory</span><span class="p">:</span> <span class="n">Callable</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="n">FilesBackend</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Register a files backend factory.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    name : str</span>
+<span class="sd">        Backend identifier (e.g., &quot;cloud&quot;, &quot;s3&quot;).</span>
+<span class="sd">    factory : callable</span>
+<span class="sd">        Callable(root, ``**kwargs``) -&gt; ``FilesBackend`` instance.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_registry</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">factory</span></div>
+
+
+
+<div class="viewcode-block" id="get_files">
+<a class="viewcode-back" href="../../source/api/app.html#scitex.app.get_files">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_files</span><span class="p">(</span>
+    <span class="n">root</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">backend</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">FilesBackend</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get a files backend instance.</span>
+
+<span class="sd">    Auto-detection logic:</span>
+
+<span class="sd">    1. If ``backend`` is specified, use that.</span>
+<span class="sd">    2. If ``SCITEX_API_TOKEN`` env var is set and &quot;cloud&quot; backend</span>
+<span class="sd">       is registered, use cloud.</span>
+<span class="sd">    3. Otherwise, use filesystem (default).</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    root : str or Path, optional</span>
+<span class="sd">        Root directory for filesystem backend. Defaults to cwd.</span>
+<span class="sd">    backend : str, optional</span>
+<span class="sd">        Explicit backend name. If None, auto-detected.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    FilesBackend</span>
+<span class="sd">        A backend instance.</span>
+
+<span class="sd">    Raises</span>
+<span class="sd">    ------</span>
+<span class="sd">    KeyError</span>
+<span class="sd">        If the requested backend is not registered.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">backend</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">backend</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">_registry</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">KeyError</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Backend </span><span class="si">{</span><span class="n">backend</span><span class="si">!r}</span><span class="s2"> not registered. &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;Available: </span><span class="si">{</span><span class="nb">list</span><span class="p">(</span><span class="n">_registry</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+        <span class="k">return</span> <span class="n">_registry</span><span class="p">[</span><span class="n">backend</span><span class="p">](</span><span class="n">root</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;SCITEX_API_TOKEN&quot;</span><span class="p">):</span>
+        <span class="k">if</span> <span class="s2">&quot;cloud&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">_registry</span><span class="p">:</span>
+            <span class="c1"># Auto-register cloud backend when token is available</span>
+            <span class="kn">from</span><span class="w"> </span><span class="nn">._cloud_files</span><span class="w"> </span><span class="kn">import</span> <span class="n">cloud_files_factory</span>
+
+            <span class="n">_registry</span><span class="p">[</span><span class="s2">&quot;cloud&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cloud_files_factory</span>
+        <span class="k">return</span> <span class="n">_registry</span><span class="p">[</span><span class="s2">&quot;cloud&quot;</span><span class="p">](</span><span class="n">root</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._filesystem</span><span class="w"> </span><span class="kn">import</span> <span class="n">FileSystemBackend</span>
+
+    <span class="k">return</span> <span class="n">FileSystemBackend</span><span class="p">(</span><span class="n">root</span> <span class="ow">or</span> <span class="n">Path</span><span class="o">.</span><span class="n">cwd</span><span class="p">())</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;FilesBackend&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get_files&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;register_backend&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;build_tree&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+
+<span class="c1"># Internal cloud modules — accessible via scitex_app.sdk._client etc.</span>
+<span class="c1"># but NOT part of the public API contract. Use scitex_cloud.sdk for</span>
+<span class="c1"># cloud service access (data, files, jobs, scitex, external).</span>
+<span class="k">def</span><span class="w"> </span><span class="fm">__getattr__</span><span class="p">(</span><span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Lazy-load cloud internals on demand (not in __all__).&quot;&quot;&quot;</span>
+    <span class="n">_lazy</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;PlatformClient&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;._client&quot;</span><span class="p">,</span> <span class="s2">&quot;PlatformClient&quot;</span><span class="p">),</span>
+        <span class="s2">&quot;get_client&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;._client&quot;</span><span class="p">,</span> <span class="s2">&quot;get_client&quot;</span><span class="p">),</span>
+        <span class="s2">&quot;reset_client&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;._client&quot;</span><span class="p">,</span> <span class="s2">&quot;reset_client&quot;</span><span class="p">),</span>
+        <span class="s2">&quot;CloudFilesBackend&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;._cloud_files&quot;</span><span class="p">,</span> <span class="s2">&quot;CloudFilesBackend&quot;</span><span class="p">),</span>
+        <span class="s2">&quot;data&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_cloud_data&quot;</span><span class="p">),</span>
+        <span class="s2">&quot;files&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_cloud_files&quot;</span><span class="p">),</span>
+        <span class="s2">&quot;jobs&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_cloud_jobs&quot;</span><span class="p">),</span>
+        <span class="s2">&quot;scitex&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_cloud_scitex&quot;</span><span class="p">),</span>
+        <span class="s2">&quot;external&quot;</span><span class="p">:</span> <span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_cloud_external&quot;</span><span class="p">),</span>
+    <span class="p">}</span>
+    <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">_lazy</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">importlib</span>
+
+        <span class="n">mod_path</span><span class="p">,</span> <span class="n">attr</span> <span class="o">=</span> <span class="n">_lazy</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+        <span class="k">if</span> <span class="n">mod_path</span> <span class="o">==</span> <span class="s2">&quot;.&quot;</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">importlib</span><span class="o">.</span><span class="n">import_module</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;.</span><span class="si">{</span><span class="n">attr</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">__package__</span><span class="p">)</span>
+        <span class="n">mod</span> <span class="o">=</span> <span class="n">importlib</span><span class="o">.</span><span class="n">import_module</span><span class="p">(</span><span class="n">mod_path</span><span class="p">,</span> <span class="n">__package__</span><span class="p">)</span>
+        <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">mod</span><span class="p">,</span> <span class="n">attr</span><span class="p">)</span>
+    <span class="k">raise</span> <span class="ne">AttributeError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;module </span><span class="si">{</span><span class="vm">__name__</span><span class="si">!r}</span><span class="s2"> has no attribute </span><span class="si">{</span><span class="n">name</span><span class="si">!r}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_app/sdk/_protocol.html b/src/scitex/_sphinx_html/_modules/scitex_app/sdk/_protocol.html
new file mode 100644
index 000000000..be64f6949
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_app/sdk/_protocol.html
@@ -0,0 +1,810 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
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+  <meta charset="utf-8" />
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#config-object">CONFIG Object</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#how-it-works">How It Works</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../../installation.html">Installation</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
+      </nav>
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+      <div class="wy-nav-content">
+        <div class="rst-content">
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../sdk.html">scitex_app.sdk</a></li>
+      <li class="breadcrumb-item active">scitex_app.sdk._protocol</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_app.sdk._protocol</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-03-13</span>
+<span class="c1"># File: scitex_app/sdk/_protocol.py</span>
+
+<span class="sd">&quot;&quot;&quot;FilesBackend protocol — structural typing for pluggable storage.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Protocol</span><span class="p">,</span> <span class="n">Union</span><span class="p">,</span> <span class="n">runtime_checkable</span>
+
+
+<div class="viewcode-block" id="FilesBackend">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.FilesBackend">[docs]</a>
+<span class="nd">@runtime_checkable</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">FilesBackend</span><span class="p">(</span><span class="n">Protocol</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;File storage backend protocol.</span>
+
+<span class="sd">    Implementations must provide these 7 methods.</span>
+<span class="sd">    Uses ``typing.Protocol`` for structural subtyping — backends</span>
+<span class="sd">    just implement the methods, no inheritance required.</span>
+
+<span class="sd">    Implementations</span>
+<span class="sd">    ---------------</span>
+<span class="sd">    - ``FileSystemBackend`` — local pathlib (ships with scitex-app)</span>
+<span class="sd">    - ``CloudFilesBackend`` — HTTP via scitex_cloud (provided at runtime)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="FilesBackend.read">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.FilesBackend.read">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">read</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="o">*</span><span class="p">,</span> <span class="n">binary</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">bytes</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Read file content.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        path : str</span>
+<span class="sd">            Relative path within the backend&#39;s namespace.</span>
+<span class="sd">        binary : bool</span>
+<span class="sd">            If True, return bytes; otherwise return str.</span>
+
+<span class="sd">        Raises</span>
+<span class="sd">        ------</span>
+<span class="sd">        FileNotFoundError</span>
+<span class="sd">            If the file does not exist.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="o">...</span></div>
+
+
+<div class="viewcode-block" id="FilesBackend.write">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.FilesBackend.write">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">write</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">content</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">bytes</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Write content to a file, creating parent dirs as needed.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        path : str</span>
+<span class="sd">            Relative path within the backend&#39;s namespace.</span>
+<span class="sd">        content : str or bytes</span>
+<span class="sd">            Text or binary content.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="o">...</span></div>
+
+
+<div class="viewcode-block" id="FilesBackend.list">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.FilesBackend.list">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">list</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">directory</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">,</span>
+        <span class="o">*</span><span class="p">,</span>
+        <span class="n">extensions</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;List file paths in a directory.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        directory : str</span>
+<span class="sd">            Relative directory path (&quot;&quot; = root).</span>
+<span class="sd">        extensions : list of str, optional</span>
+<span class="sd">            Filter by extension, e.g. [&quot;.yaml&quot;, &quot;.png&quot;].</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        list of str</span>
+<span class="sd">            Relative file paths.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="o">...</span></div>
+
+
+<div class="viewcode-block" id="FilesBackend.exists">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.FilesBackend.exists">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">exists</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Check if a file exists.&quot;&quot;&quot;</span>
+        <span class="o">...</span></div>
+
+
+<div class="viewcode-block" id="FilesBackend.delete">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.FilesBackend.delete">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">delete</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Delete a file.</span>
+
+<span class="sd">        Raises</span>
+<span class="sd">        ------</span>
+<span class="sd">        FileNotFoundError</span>
+<span class="sd">            If the file does not exist.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="o">...</span></div>
+
+
+<div class="viewcode-block" id="FilesBackend.rename">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.FilesBackend.rename">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">rename</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">old_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">new_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Rename/move a file within the namespace.</span>
+
+<span class="sd">        Raises</span>
+<span class="sd">        ------</span>
+<span class="sd">        FileNotFoundError</span>
+<span class="sd">            If old_path does not exist.</span>
+<span class="sd">        FileExistsError</span>
+<span class="sd">            If new_path already exists.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="o">...</span></div>
+
+
+<div class="viewcode-block" id="FilesBackend.copy">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.FilesBackend.copy">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">copy</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">src_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">dest_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Copy a file within the namespace.</span>
+
+<span class="sd">        Raises</span>
+<span class="sd">        ------</span>
+<span class="sd">        FileNotFoundError</span>
+<span class="sd">            If src_path does not exist.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="o">...</span></div>
+</div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_app/sdk/_tree.html b/src/scitex/_sphinx_html/_modules/scitex_app/sdk/_tree.html
new file mode 100644
index 000000000..5a4a76354
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_app/sdk/_tree.html
@@ -0,0 +1,821 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_app.sdk._tree &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../../genindex.html" />
+    <link rel="search" title="Search" href="../../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
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+          <li class="breadcrumb-item"><a href="../sdk.html">scitex_app.sdk</a></li>
+      <li class="breadcrumb-item active">scitex_app.sdk._tree</li>
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+             
+  <h1>Source code for scitex_app.sdk._tree</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-03-15</span>
+<span class="c1"># File: scitex_app/sdk/_tree.py</span>
+
+<span class="sd">&quot;&quot;&quot;Tree builder utility for FilesBackend.</span>
+
+<span class="sd">Converts flat file listings into nested directory tree structures.</span>
+<span class="sd">Reusable by any app that needs a file browser UI.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span>
+
+
+<div class="viewcode-block" id="build_tree">
+<a class="viewcode-back" href="../../../source/api/app.html#scitex.app.build_tree">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">build_tree</span><span class="p">(</span>
+    <span class="n">backend</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span>
+    <span class="n">directory</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">extensions</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">skip_hidden</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">max_depth</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">10</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Build a nested tree structure from a FilesBackend.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    backend : FilesBackend</span>
+<span class="sd">        A file storage backend implementing the FilesBackend protocol.</span>
+<span class="sd">    directory : str</span>
+<span class="sd">        Starting directory (relative to backend root). Default: root.</span>
+<span class="sd">    extensions : list of str, optional</span>
+<span class="sd">        Filter files by extension (e.g., [&quot;.yaml&quot;, &quot;.png&quot;]).</span>
+<span class="sd">        Directories are always included for traversal.</span>
+<span class="sd">    skip_hidden : bool</span>
+<span class="sd">        Skip files/directories starting with &quot;.&quot;. Default: True.</span>
+<span class="sd">    max_depth : int</span>
+<span class="sd">        Maximum recursion depth to prevent runaway traversal. Default: 10.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list of dict</span>
+<span class="sd">        Nested tree structure::</span>
+
+<span class="sd">            [</span>
+<span class="sd">                {&quot;path&quot;: &quot;subdir&quot;, &quot;name&quot;: &quot;subdir&quot;, &quot;type&quot;: &quot;directory&quot;,</span>
+<span class="sd">                 &quot;children&quot;: [...]},</span>
+<span class="sd">                {&quot;path&quot;: &quot;file.yaml&quot;, &quot;name&quot;: &quot;file.yaml&quot;, &quot;type&quot;: &quot;file&quot;},</span>
+<span class="sd">            ]</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">max_depth</span> <span class="o">&lt;=</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+
+    <span class="c1"># Get all entries in this directory</span>
+    <span class="n">entries</span> <span class="o">=</span> <span class="n">_list_entries</span><span class="p">(</span><span class="n">backend</span><span class="p">,</span> <span class="n">directory</span><span class="p">)</span>
+    <span class="n">items</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">entries</span><span class="p">:</span>
+        <span class="n">name</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">entry</span><span class="p">[</span><span class="s2">&quot;path&quot;</span><span class="p">])</span><span class="o">.</span><span class="n">name</span>
+
+        <span class="k">if</span> <span class="n">skip_hidden</span> <span class="ow">and</span> <span class="n">name</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">):</span>
+            <span class="k">continue</span>
+
+        <span class="k">if</span> <span class="n">entry</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;directory&quot;</span><span class="p">:</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">children</span> <span class="o">=</span> <span class="n">build_tree</span><span class="p">(</span>
+                    <span class="n">backend</span><span class="p">,</span>
+                    <span class="n">entry</span><span class="p">[</span><span class="s2">&quot;path&quot;</span><span class="p">],</span>
+                    <span class="n">extensions</span><span class="o">=</span><span class="n">extensions</span><span class="p">,</span>
+                    <span class="n">skip_hidden</span><span class="o">=</span><span class="n">skip_hidden</span><span class="p">,</span>
+                    <span class="n">max_depth</span><span class="o">=</span><span class="n">max_depth</span> <span class="o">-</span> <span class="mi">1</span><span class="p">,</span>
+                <span class="p">)</span>
+            <span class="k">except</span> <span class="ne">PermissionError</span><span class="p">:</span>
+                <span class="k">continue</span>  <span class="c1"># skip directories we can&#39;t read</span>
+            <span class="k">if</span> <span class="n">children</span><span class="p">:</span>  <span class="c1"># only include non-empty directories</span>
+                <span class="n">items</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="p">{</span>
+                        <span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="n">entry</span><span class="p">[</span><span class="s2">&quot;path&quot;</span><span class="p">],</span>
+                        <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span>
+                        <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;directory&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;children&quot;</span><span class="p">:</span> <span class="n">children</span><span class="p">,</span>
+                    <span class="p">}</span>
+                <span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># Apply extension filter to files</span>
+            <span class="k">if</span> <span class="n">extensions</span><span class="p">:</span>
+                <span class="n">suffix</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">suffix</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+                <span class="k">if</span> <span class="n">suffix</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">extensions</span><span class="p">:</span>
+                    <span class="k">continue</span>
+            <span class="n">items</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span>
+                    <span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="n">entry</span><span class="p">[</span><span class="s2">&quot;path&quot;</span><span class="p">],</span>
+                    <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span>
+                    <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;file&quot;</span><span class="p">,</span>
+                <span class="p">}</span>
+            <span class="p">)</span>
+
+    <span class="c1"># Sort: pure alphabetical (case-insensitive), dirs and files interleaved</span>
+    <span class="n">items</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="s2">&quot;name&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">lower</span><span class="p">())</span>
+    <span class="k">return</span> <span class="n">items</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_list_entries</span><span class="p">(</span>
+    <span class="n">backend</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span>
+    <span class="n">directory</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;List directory entries with type information.</span>
+
+<span class="sd">    Tries backend.list_entries() first (if available, returns files + dirs).</span>
+<span class="sd">    Falls back to backend.list() for files and attempts directory discovery.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Preferred: backend supports list_entries() returning typed entries</span>
+    <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">backend</span><span class="p">,</span> <span class="s2">&quot;list_entries&quot;</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">backend</span><span class="o">.</span><span class="n">list_entries</span><span class="p">(</span><span class="n">directory</span><span class="p">)</span>
+
+    <span class="c1"># Fallback: use list() for files, try to discover directories</span>
+    <span class="c1"># via the backend&#39;s internal structure</span>
+    <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">backend</span><span class="p">,</span> <span class="s2">&quot;_root&quot;</span><span class="p">):</span>
+        <span class="c1"># FileSystemBackend — access pathlib directly for directory info</span>
+        <span class="n">root</span> <span class="o">=</span> <span class="n">backend</span><span class="o">.</span><span class="n">_root</span>
+        <span class="n">target</span> <span class="o">=</span> <span class="p">(</span><span class="n">root</span> <span class="o">/</span> <span class="n">directory</span><span class="p">)</span> <span class="k">if</span> <span class="n">directory</span> <span class="k">else</span> <span class="n">root</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">target</span><span class="o">.</span><span class="n">is_dir</span><span class="p">():</span>
+            <span class="k">return</span> <span class="p">[]</span>
+        <span class="n">entries</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">children</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">target</span><span class="o">.</span><span class="n">iterdir</span><span class="p">(),</span> <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">name</span><span class="o">.</span><span class="n">lower</span><span class="p">())</span>
+        <span class="k">except</span> <span class="ne">PermissionError</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">children</span><span class="p">:</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">rel</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">item</span><span class="o">.</span><span class="n">relative_to</span><span class="p">(</span><span class="n">root</span><span class="p">))</span>
+                <span class="k">if</span> <span class="n">item</span><span class="o">.</span><span class="n">is_dir</span><span class="p">():</span>
+                    <span class="n">entries</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="n">rel</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;directory&quot;</span><span class="p">})</span>
+                <span class="k">elif</span> <span class="n">item</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+                    <span class="n">entries</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="n">rel</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;file&quot;</span><span class="p">})</span>
+            <span class="k">except</span> <span class="ne">PermissionError</span><span class="p">:</span>
+                <span class="k">continue</span>  <span class="c1"># skip files/dirs we can&#39;t access</span>
+        <span class="k">return</span> <span class="n">entries</span>
+
+    <span class="c1"># Last resort: list() returns only files, no directory info</span>
+    <span class="n">files</span> <span class="o">=</span> <span class="n">backend</span><span class="o">.</span><span class="n">list</span><span class="p">(</span><span class="n">directory</span><span class="p">)</span>
+    <span class="k">return</span> <span class="p">[{</span><span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="n">f</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;file&quot;</span><span class="p">}</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">files</span><span class="p">]</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_audit/_runner.html b/src/scitex/_sphinx_html/_modules/scitex_audit/_runner.html
new file mode 100644
index 000000000..f84add944
--- /dev/null
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@@ -0,0 +1,801 @@
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+
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_audit._runner</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_audit._runner</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># File: src/scitex_audit/_runner.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Core audit orchestrator.</span>
+
+<span class="sd">Discovers available tools and runs each requested checker,</span>
+<span class="sd">returning a unified results dictionary.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">shutil</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._bandit</span><span class="w"> </span><span class="kn">import</span> <span class="n">run_bandit</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._format</span><span class="w"> </span><span class="kn">import</span> <span class="n">format_json</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._github</span><span class="w"> </span><span class="kn">import</span> <span class="n">run_github_check</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._pip_audit</span><span class="w"> </span><span class="kn">import</span> <span class="n">run_pip_audit</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._shellcheck</span><span class="w"> </span><span class="kn">import</span> <span class="n">run_shellcheck</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+<span class="n">ALL_CHECKS</span> <span class="o">=</span> <span class="p">(</span><span class="s2">&quot;python&quot;</span><span class="p">,</span> <span class="s2">&quot;shell&quot;</span><span class="p">,</span> <span class="s2">&quot;deps&quot;</span><span class="p">,</span> <span class="s2">&quot;github&quot;</span><span class="p">)</span>
+
+<span class="n">_TOOL_REQUIREMENTS</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="s2">&quot;python&quot;</span><span class="p">:</span> <span class="s2">&quot;bandit&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;shell&quot;</span><span class="p">:</span> <span class="s2">&quot;shellcheck&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;deps&quot;</span><span class="p">:</span> <span class="s2">&quot;pip-audit&quot;</span><span class="p">,</span>
+<span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_is_tool_available</span><span class="p">(</span><span class="n">tool_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check whether a CLI tool is on PATH.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">shutil</span><span class="o">.</span><span class="n">which</span><span class="p">(</span><span class="n">tool_name</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_is_gh_authenticated</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check whether gh CLI is installed and authenticated.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">_is_tool_available</span><span class="p">(</span><span class="s2">&quot;gh&quot;</span><span class="p">):</span>
+        <span class="k">return</span> <span class="kc">False</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;gh&quot;</span><span class="p">,</span> <span class="s2">&quot;auth&quot;</span><span class="p">,</span> <span class="s2">&quot;status&quot;</span><span class="p">],</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_skipped_result</span><span class="p">(</span><span class="n">tool_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return a standard skipped result.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;skipped&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;findings&quot;</span><span class="p">:</span> <span class="p">[],</span>
+        <span class="s2">&quot;summary&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;Skipped (</span><span class="si">{</span><span class="n">tool_name</span><span class="si">}</span><span class="s2"> not installed)&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+
+
+<div class="viewcode-block" id="audit">
+<a class="viewcode-back" href="../../source/api/audit.html#scitex.audit.audit">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">audit</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span>
+    <span class="n">checks</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">output_file</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Run security audit across multiple tools.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str</span>
+<span class="sd">        Directory to scan. Defaults to current directory.</span>
+<span class="sd">    checks : list[str] | None</span>
+<span class="sd">        Which checks to run. Options: &quot;python&quot;, &quot;shell&quot;, &quot;deps&quot;, &quot;github&quot;.</span>
+<span class="sd">        None means run all available checks.</span>
+<span class="sd">    output_file : str | None</span>
+<span class="sd">        If given, write JSON report to this path.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Keys are check names, values have {status, findings, summary}.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">target</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+    <span class="n">requested</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">checks</span><span class="p">)</span> <span class="k">if</span> <span class="n">checks</span> <span class="k">else</span> <span class="nb">list</span><span class="p">(</span><span class="n">ALL_CHECKS</span><span class="p">)</span>
+    <span class="n">results</span><span class="p">:</span> <span class="nb">dict</span> <span class="o">=</span> <span class="p">{}</span>
+
+    <span class="k">for</span> <span class="n">check</span> <span class="ow">in</span> <span class="n">requested</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">check</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">ALL_CHECKS</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="s2">&quot;Unknown check </span><span class="si">%r</span><span class="s2">, skipping&quot;</span><span class="p">,</span> <span class="n">check</span><span class="p">)</span>
+            <span class="k">continue</span>
+
+        <span class="k">if</span> <span class="n">check</span> <span class="o">==</span> <span class="s2">&quot;github&quot;</span><span class="p">:</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">_is_gh_authenticated</span><span class="p">():</span>
+                <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;GitHub CLI not available or not authenticated, skipping&quot;</span><span class="p">)</span>
+                <span class="n">results</span><span class="p">[</span><span class="s2">&quot;github&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_skipped_result</span><span class="p">(</span><span class="s2">&quot;gh&quot;</span><span class="p">)</span>
+                <span class="k">continue</span>
+            <span class="n">results</span><span class="p">[</span><span class="s2">&quot;github&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">run_github_check</span><span class="p">()</span>
+
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">tool_name</span> <span class="o">=</span> <span class="n">_TOOL_REQUIREMENTS</span><span class="p">[</span><span class="n">check</span><span class="p">]</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">_is_tool_available</span><span class="p">(</span><span class="n">tool_name</span><span class="p">):</span>
+                <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">%s</span><span class="s2"> not installed, skipping </span><span class="si">%s</span><span class="s2"> check&quot;</span><span class="p">,</span> <span class="n">tool_name</span><span class="p">,</span> <span class="n">check</span><span class="p">)</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">check</span><span class="p">]</span> <span class="o">=</span> <span class="n">_skipped_result</span><span class="p">(</span><span class="n">tool_name</span><span class="p">)</span>
+                <span class="k">continue</span>
+
+            <span class="k">if</span> <span class="n">check</span> <span class="o">==</span> <span class="s2">&quot;python&quot;</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="s2">&quot;python&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">run_bandit</span><span class="p">(</span><span class="n">target</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="n">check</span> <span class="o">==</span> <span class="s2">&quot;shell&quot;</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="s2">&quot;shell&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">run_shellcheck</span><span class="p">(</span><span class="n">target</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="n">check</span> <span class="o">==</span> <span class="s2">&quot;deps&quot;</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="s2">&quot;deps&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">run_pip_audit</span><span class="p">(</span><span class="n">target</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">output_file</span><span class="p">:</span>
+        <span class="n">out_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">output_file</span><span class="p">)</span>
+        <span class="n">out_path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="n">out_path</span><span class="o">.</span><span class="n">write_text</span><span class="p">(</span><span class="n">format_json</span><span class="p">(</span><span class="n">results</span><span class="p">))</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;Report written to </span><span class="si">%s</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">out_path</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+      });
+  </script> 
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_clew.html b/src/scitex/_sphinx_html/_modules/scitex_clew.html
new file mode 100644
index 000000000..2f10f14a8
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+++ b/src/scitex/_sphinx_html/_modules/scitex_clew.html
@@ -0,0 +1,1112 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_clew &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
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+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
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+    <input type="hidden" name="check_keywords" value="yes" />
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_clew</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_clew</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">scitex-clew — Hash-based verification for reproducible science.</span>
+
+<span class="sd">Standalone package. Zero dependencies (pure stdlib + sqlite3).</span>
+<span class="sd">When used with scitex, integration is automatic via @stx.session + stx.io.</span>
+
+<span class="sd">Public API::</span>
+
+<span class="sd">    import scitex_clew as clew</span>
+
+<span class="sd">    # Verification</span>
+<span class="sd">    clew.status()                      # git-status-like overview</span>
+<span class="sd">    clew.run(session_id)               # verify one run (hash check)</span>
+<span class="sd">    clew.chain(target_file)            # trace file → source chain</span>
+<span class="sd">    clew.dag(targets)                  # verify full DAG</span>
+<span class="sd">    clew.rerun(target)                 # re-execute &amp; compare (sandbox)</span>
+<span class="sd">    clew.rerun_dag(targets)            # rerun full DAG in topo order</span>
+<span class="sd">    clew.rerun_claims()                # rerun all claim-backing sessions</span>
+<span class="sd">    clew.list_runs(limit=100)          # list tracked runs</span>
+<span class="sd">    clew.stats()                       # database statistics</span>
+
+<span class="sd">    # Claims</span>
+<span class="sd">    clew.add_claim(...)                # register manuscript assertion</span>
+<span class="sd">    clew.list_claims(...)              # list registered claims</span>
+<span class="sd">    clew.verify_claim(...)             # verify a specific claim</span>
+
+<span class="sd">    # Stamping</span>
+<span class="sd">    clew.stamp(...)                    # create temporal proof</span>
+<span class="sd">    clew.list_stamps(...)              # list stamps</span>
+<span class="sd">    clew.check_stamp(...)              # verify a stamp</span>
+
+<span class="sd">    # Hashing</span>
+<span class="sd">    clew.hash_file(path)               # SHA256 of a file</span>
+<span class="sd">    clew.hash_directory(path)          # SHA256 of all files in dir</span>
+
+<span class="sd">    # Visualization</span>
+<span class="sd">    clew.mermaid(...)                  # generate Mermaid DAG diagram</span>
+
+<span class="sd">    # Examples</span>
+<span class="sd">    clew.init_examples(dest)           # scaffold example pipeline</span>
+
+<span class="sd">    # Session lifecycle hooks (invoked by @scitex.session)</span>
+<span class="sd">    clew.on_session_start(session_id)  # open a tracked run</span>
+<span class="sd">    clew.on_session_close(status=...)  # finalize run + combined hash</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">importlib.metadata</span><span class="w"> </span><span class="kn">import</span> <span class="n">version</span> <span class="k">as</span> <span class="n">_v</span><span class="p">,</span> <span class="n">PackageNotFoundError</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">__version__</span> <span class="o">=</span> <span class="n">_v</span><span class="p">(</span><span class="s2">&quot;scitex-clew&quot;</span><span class="p">)</span>
+    <span class="k">except</span> <span class="n">PackageNotFoundError</span><span class="p">:</span>
+        <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0+local&quot;</span>
+    <span class="k">del</span> <span class="n">_v</span><span class="p">,</span> <span class="n">PackageNotFoundError</span>
+<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>  <span class="c1"># pragma: no cover — only on ancient Pythons</span>
+    <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0+local&quot;</span>
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Optional decorator from scitex-dev (graceful fallback)</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_dev.decorators</span><span class="w"> </span><span class="kn">import</span> <span class="n">supports_return_as</span> <span class="k">as</span> <span class="n">_supports_return_as</span>
+<span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+    <span class="c1"># Broad catch (not just ImportError): scitex-dev may import optional ML</span>
+    <span class="c1"># libs whose runtime-init can fail with VersionError / RuntimeError.</span>
+    <span class="c1"># Fall back to a no-op decorator regardless.</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">_supports_return_as</span><span class="p">(</span><span class="n">fn</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">fn</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Internal imports (hidden from public API, still importable via full path)</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.</span><span class="w"> </span><span class="kn">import</span> <span class="n">groupers</span>  <span class="c1"># public: scitex_clew.groupers</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">ChainVerification</span> <span class="k">as</span> <span class="n">_ChainVerification</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">DAGVerification</span> <span class="k">as</span> <span class="n">_DAGVerification</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">FileVerification</span> <span class="k">as</span> <span class="n">_FileVerification</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">RunVerification</span> <span class="k">as</span> <span class="n">_RunVerification</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">VerificationLevel</span> <span class="k">as</span> <span class="n">_VerificationLevel</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">VerificationStatus</span> <span class="k">as</span> <span class="n">_VerificationStatus</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">get_status</span> <span class="k">as</span> <span class="n">_get_status</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">verify_chain</span> <span class="k">as</span> <span class="n">_verify_chain</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">verify_file</span> <span class="k">as</span> <span class="n">_verify_file</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">verify_run</span> <span class="k">as</span> <span class="n">_verify_run</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._claim</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">Claim</span> <span class="k">as</span> <span class="n">_Claim</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._claim</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">add_claim</span><span class="p">,</span>
+    <span class="n">export_claims_json</span><span class="p">,</span>
+    <span class="n">list_claims</span><span class="p">,</span>
+    <span class="n">verify_claim</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._register_intermediate</span><span class="w"> </span><span class="kn">import</span> <span class="n">register_intermediate</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._observers</span><span class="w"> </span><span class="kn">import</span> <span class="n">on_session_close</span><span class="p">,</span> <span class="n">on_session_start</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._claim</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">format_claims</span> <span class="k">as</span> <span class="n">_format_claims</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._claim</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">verify_claims_dag</span> <span class="k">as</span> <span class="n">_verify_claims_dag</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._dag</span><span class="w"> </span><span class="kn">import</span> <span class="n">verify_dag</span> <span class="k">as</span> <span class="n">_verify_dag</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._dag</span><span class="w"> </span><span class="kn">import</span> <span class="n">verify_dag_strict</span> <span class="k">as</span> <span class="n">_verify_dag_strict</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._db</span><span class="w"> </span><span class="kn">import</span> <span class="n">VerificationDB</span> <span class="k">as</span> <span class="n">_VerificationDB</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._db</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_db</span> <span class="k">as</span> <span class="n">_get_db</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._db</span><span class="w"> </span><span class="kn">import</span> <span class="n">set_db</span> <span class="k">as</span> <span class="n">_set_db</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._examples</span><span class="w"> </span><span class="kn">import</span> <span class="n">init_examples</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._hash</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">combine_hashes</span> <span class="k">as</span> <span class="n">_combine_hashes</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._hash</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">hash_directory</span><span class="p">,</span>
+    <span class="n">hash_file</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._hash</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">hash_files</span> <span class="k">as</span> <span class="n">_hash_files</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._hash</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">verify_hash</span> <span class="k">as</span> <span class="n">_verify_hash</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._registry</span><span class="w"> </span><span class="kn">import</span> <span class="n">ClewRegistry</span> <span class="k">as</span> <span class="n">_ClewRegistry</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._registry</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_registry</span> <span class="k">as</span> <span class="n">_get_registry</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._rerun</span><span class="w"> </span><span class="kn">import</span> <span class="n">rerun_claims</span><span class="p">,</span> <span class="n">rerun_dag</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._rerun</span><span class="w"> </span><span class="kn">import</span> <span class="n">verify_by_rerun</span> <span class="k">as</span> <span class="n">_verify_by_rerun</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._stamp</span><span class="w"> </span><span class="kn">import</span> <span class="n">Stamp</span> <span class="k">as</span> <span class="n">_Stamp</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._stamp</span><span class="w"> </span><span class="kn">import</span> <span class="n">check_stamp</span><span class="p">,</span> <span class="n">list_stamps</span><span class="p">,</span> <span class="n">stamp</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._tracker</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">SessionTracker</span> <span class="k">as</span> <span class="n">_SessionTracker</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._tracker</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">get_tracker</span> <span class="k">as</span> <span class="n">_get_tracker</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._tracker</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">set_tracker</span> <span class="k">as</span> <span class="n">_set_tracker</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._tracker</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">start_tracking</span> <span class="k">as</span> <span class="n">_start_tracking</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._tracker</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">stop_tracking</span> <span class="k">as</span> <span class="n">_stop_tracking</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">format_chain_verification</span> <span class="k">as</span> <span class="n">_format_chain_verification</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">format_list</span> <span class="k">as</span> <span class="n">_format_list</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">format_run_detailed</span> <span class="k">as</span> <span class="n">_format_run_detailed</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">format_run_verification</span> <span class="k">as</span> <span class="n">_format_run_verification</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">format_status</span> <span class="k">as</span> <span class="n">_format_status</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">generate_html_dag</span> <span class="k">as</span> <span class="n">_generate_html_dag</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">generate_mermaid_dag</span> <span class="k">as</span> <span class="n">_generate_mermaid_dag</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">print_verification_summary</span> <span class="k">as</span> <span class="n">_print_verification_summary</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._visualize</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">render_dag</span> <span class="k">as</span> <span class="n">_render_dag</span><span class="p">,</span>
+<span class="p">)</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Public convenience API</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<div class="viewcode-block" id="list_runs">
+<a class="viewcode-back" href="../source/api/clew.html#scitex.clew.list_runs">[docs]</a>
+<span class="nd">@_supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">list_runs</span><span class="p">(</span><span class="n">limit</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">100</span><span class="p">,</span> <span class="n">status</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;List tracked runs.&quot;&quot;&quot;</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">_get_db</span><span class="p">()</span>
+    <span class="k">return</span> <span class="n">db</span><span class="o">.</span><span class="n">list_runs</span><span class="p">(</span><span class="n">status</span><span class="o">=</span><span class="n">status</span><span class="p">,</span> <span class="n">limit</span><span class="o">=</span><span class="n">limit</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="status">
+<a class="viewcode-back" href="../source/api/clew.html#scitex.clew.status">[docs]</a>
+<span class="nd">@_supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">status</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get verification status summary (like git status).&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_get_status</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="run">
+<a class="viewcode-back" href="../source/api/clew.html#scitex.clew.run">[docs]</a>
+<span class="nd">@_supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">run</span><span class="p">(</span><span class="n">session_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">from_scratch</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Verify a specific run.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    session_id : str</span>
+<span class="sd">        Session identifier</span>
+<span class="sd">    from_scratch : bool, optional</span>
+<span class="sd">        If True, re-execute the script and verify outputs (slow but thorough).</span>
+<span class="sd">        If False, only compare hashes (fast).</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">from_scratch</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_verify_by_rerun</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">_verify_run</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="chain">
+<a class="viewcode-back" href="../source/api/clew.html#scitex.clew.chain">[docs]</a>
+<span class="nd">@_supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">chain</span><span class="p">(</span><span class="n">target</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Verify the dependency chain for a target file.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_verify_chain</span><span class="p">(</span><span class="n">target</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="stats">
+<a class="viewcode-back" href="../source/api/clew.html#scitex.clew.stats">[docs]</a>
+<span class="nd">@_supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">stats</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get database statistics.&quot;&quot;&quot;</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">_get_db</span><span class="p">()</span>
+    <span class="k">return</span> <span class="n">db</span><span class="o">.</span><span class="n">stats</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="dag">
+<a class="viewcode-back" href="../source/api/clew.html#scitex.clew.dag">[docs]</a>
+<span class="nd">@_supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">dag</span><span class="p">(</span><span class="n">targets</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">claims</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Verify the DAG for multiple targets or all claims.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    targets : list of str or Path, optional</span>
+<span class="sd">        Target files to verify (mutually exclusive with ``claims``).</span>
+<span class="sd">    claims : bool, optional</span>
+<span class="sd">        If True, build the DAG from every registered claim.</span>
+<span class="sd">    strict : bool, optional</span>
+<span class="sd">        If True (F2), return a failure-attribution dict with</span>
+<span class="sd">        ``failed_node`` / ``root_cause`` / ``invalidated_claims`` /</span>
+<span class="sd">        ``still_valid_claims`` instead of a ``DAGVerification``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">strict</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_verify_dag_strict</span><span class="p">(</span><span class="n">targets</span><span class="o">=</span><span class="n">targets</span><span class="p">,</span> <span class="n">claims</span><span class="o">=</span><span class="n">claims</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">claims</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_verify_claims_dag</span><span class="p">()</span>
+    <span class="k">return</span> <span class="n">_verify_dag</span><span class="p">(</span><span class="n">targets</span> <span class="ow">or</span> <span class="p">[])</span></div>
+
+
+
+<div class="viewcode-block" id="rerun">
+<a class="viewcode-back" href="../source/api/clew.html#scitex.clew.rerun">[docs]</a>
+<span class="nd">@_supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">rerun</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">300</span><span class="p">,</span> <span class="n">cleanup</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Re-execute a session in a sandbox and compare outputs.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    target : str or list[str]</span>
+<span class="sd">        Session ID, script path, or artifact path.</span>
+<span class="sd">    timeout : int, optional</span>
+<span class="sd">        Maximum execution time in seconds (default: 300).</span>
+<span class="sd">    cleanup : bool, optional</span>
+<span class="sd">        Remove sandbox outputs after verification (default: True).</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_verify_by_rerun</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="n">timeout</span><span class="o">=</span><span class="n">timeout</span><span class="p">,</span> <span class="n">cleanup</span><span class="o">=</span><span class="n">cleanup</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="mermaid">
+<a class="viewcode-back" href="../source/api/clew.html#scitex.clew.mermaid">[docs]</a>
+<span class="nd">@_supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">mermaid</span><span class="p">(</span>
+    <span class="n">session_id</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">target_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">target_files</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">claims</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="n">grouper</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="o">**</span><span class="n">kwargs</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate a Mermaid DAG diagram.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    session_id : str, optional</span>
+<span class="sd">        Start from this session.</span>
+<span class="sd">    target_file : str, optional</span>
+<span class="sd">        Start from the session that produced this file.</span>
+<span class="sd">    target_files : list of str, optional</span>
+<span class="sd">        Multiple target files (multi-target DAG).</span>
+<span class="sd">    claims : bool, optional</span>
+<span class="sd">        If True, build DAG from all registered claims.</span>
+<span class="sd">    grouper : callable | dict | None, optional</span>
+<span class="sd">        File grouping strategy. Callable or JSON/dict spec (see</span>
+<span class="sd">        ``scitex_clew.groupers.resolve_spec``). If ``None``, falls back to</span>
+<span class="sd">        ``.scitex/clew/config.yaml`` (key ``grouper``) if present.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">grouper</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">._groupers._config</span><span class="w"> </span><span class="kn">import</span> <span class="n">load_project_config</span>
+
+        <span class="n">grouper</span> <span class="o">=</span> <span class="n">load_project_config</span><span class="p">()</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;grouper&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">_generate_mermaid_dag</span><span class="p">(</span>
+        <span class="n">session_id</span><span class="o">=</span><span class="n">session_id</span><span class="p">,</span>
+        <span class="n">target_file</span><span class="o">=</span><span class="n">target_file</span><span class="p">,</span>
+        <span class="n">target_files</span><span class="o">=</span><span class="n">target_files</span><span class="p">,</span>
+        <span class="n">claims</span><span class="o">=</span><span class="n">claims</span><span class="p">,</span>
+        <span class="n">grouper</span><span class="o">=</span><span class="n">grouper</span><span class="p">,</span>
+        <span class="o">**</span><span class="n">kwargs</span><span class="p">,</span>
+    <span class="p">)</span></div>
+
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Accessible but not in __all__ (for advanced use / backward compat)</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="n">get_db</span> <span class="o">=</span> <span class="n">_get_db</span>
+<span class="n">set_db</span> <span class="o">=</span> <span class="n">_set_db</span>
+<span class="n">verify_run</span> <span class="o">=</span> <span class="n">_verify_run</span>
+<span class="n">verify_chain</span> <span class="o">=</span> <span class="n">_verify_chain</span>
+<span class="n">verify_dag</span> <span class="o">=</span> <span class="n">_verify_dag</span>
+<span class="n">verify_file</span> <span class="o">=</span> <span class="n">_verify_file</span>
+<span class="n">verify_by_rerun</span> <span class="o">=</span> <span class="n">_verify_by_rerun</span>
+<span class="n">verify_claims_dag</span> <span class="o">=</span> <span class="n">_verify_claims_dag</span>
+<span class="n">get_status</span> <span class="o">=</span> <span class="n">_get_status</span>
+<span class="n">generate_mermaid_dag</span> <span class="o">=</span> <span class="n">_generate_mermaid_dag</span>
+<span class="n">get_tracker</span> <span class="o">=</span> <span class="n">_get_tracker</span>
+<span class="n">set_tracker</span> <span class="o">=</span> <span class="n">_set_tracker</span>
+<span class="n">start_tracking</span> <span class="o">=</span> <span class="n">_start_tracking</span>
+<span class="n">stop_tracking</span> <span class="o">=</span> <span class="n">_stop_tracking</span>
+<span class="n">get_registry</span> <span class="o">=</span> <span class="n">_get_registry</span>
+<span class="n">format_claims</span> <span class="o">=</span> <span class="n">_format_claims</span>
+<span class="n">format_status</span> <span class="o">=</span> <span class="n">_format_status</span>
+<span class="n">format_list</span> <span class="o">=</span> <span class="n">_format_list</span>
+<span class="n">format_run_verification</span> <span class="o">=</span> <span class="n">_format_run_verification</span>
+<span class="n">format_run_detailed</span> <span class="o">=</span> <span class="n">_format_run_detailed</span>
+<span class="n">format_chain_verification</span> <span class="o">=</span> <span class="n">_format_chain_verification</span>
+<span class="n">print_verification_summary</span> <span class="o">=</span> <span class="n">_print_verification_summary</span>
+<span class="n">generate_html_dag</span> <span class="o">=</span> <span class="n">_generate_html_dag</span>
+<span class="n">render_dag</span> <span class="o">=</span> <span class="n">_render_dag</span>
+<span class="n">combine_hashes</span> <span class="o">=</span> <span class="n">_combine_hashes</span>
+<span class="n">hash_files</span> <span class="o">=</span> <span class="n">_hash_files</span>
+<span class="n">verify_hash</span> <span class="o">=</span> <span class="n">_verify_hash</span>
+<span class="n">verify_run_from_scratch</span> <span class="o">=</span> <span class="n">_verify_by_rerun</span>
+
+<span class="c1"># Class/type names</span>
+<span class="n">VerificationDB</span> <span class="o">=</span> <span class="n">_VerificationDB</span>
+<span class="n">SessionTracker</span> <span class="o">=</span> <span class="n">_SessionTracker</span>
+<span class="n">ClewRegistry</span> <span class="o">=</span> <span class="n">_ClewRegistry</span>
+<span class="n">VerificationStatus</span> <span class="o">=</span> <span class="n">_VerificationStatus</span>
+<span class="n">VerificationLevel</span> <span class="o">=</span> <span class="n">_VerificationLevel</span>
+<span class="n">FileVerification</span> <span class="o">=</span> <span class="n">_FileVerification</span>
+<span class="n">RunVerification</span> <span class="o">=</span> <span class="n">_RunVerification</span>
+<span class="n">ChainVerification</span> <span class="o">=</span> <span class="n">_ChainVerification</span>
+<span class="n">DAGVerification</span> <span class="o">=</span> <span class="n">_DAGVerification</span>
+<span class="n">Claim</span> <span class="o">=</span> <span class="n">_Claim</span>
+<span class="n">Stamp</span> <span class="o">=</span> <span class="n">_Stamp</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Public API — only these 19 names show in dir() and tab-completion</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;__version__&quot;</span><span class="p">,</span>
+    <span class="c1"># Verification</span>
+    <span class="s2">&quot;status&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;run&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;chain&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;dag&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;rerun&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;rerun_dag&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;rerun_claims&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;list_runs&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;stats&quot;</span><span class="p">,</span>
+    <span class="c1"># Claims</span>
+    <span class="s2">&quot;add_claim&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;list_claims&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;verify_claim&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;export_claims_json&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;register_intermediate&quot;</span><span class="p">,</span>
+    <span class="c1"># Stamping</span>
+    <span class="s2">&quot;stamp&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;list_stamps&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;check_stamp&quot;</span><span class="p">,</span>
+    <span class="c1"># Hashing</span>
+    <span class="s2">&quot;hash_file&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;hash_directory&quot;</span><span class="p">,</span>
+    <span class="c1"># Visualization</span>
+    <span class="s2">&quot;mermaid&quot;</span><span class="p">,</span>
+    <span class="c1"># Grouping API</span>
+    <span class="s2">&quot;groupers&quot;</span><span class="p">,</span>
+    <span class="c1"># Examples</span>
+    <span class="s2">&quot;init_examples&quot;</span><span class="p">,</span>
+    <span class="c1"># Session lifecycle hooks</span>
+    <span class="s2">&quot;on_session_start&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;on_session_close&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># SOC R6: self-register post-save / post-load hooks with scitex-io.</span>
+<span class="c1"># Must never break ``import scitex_clew`` — broad except is intentional.</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._observers</span><span class="w"> </span><span class="kn">import</span> <span class="n">register_with_scitex_io</span> <span class="k">as</span> <span class="n">_register</span>
+
+    <span class="n">_register</span><span class="p">()</span>
+    <span class="k">del</span> <span class="n">_register</span>
+<span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+    <span class="k">pass</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_clew/_claim.html b/src/scitex/_sphinx_html/_modules/scitex_clew/_claim.html
new file mode 100644
index 000000000..bc7c55224
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_clew/_claim.html
@@ -0,0 +1,1308 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_clew._claim &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
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+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+      <div class="wy-nav-content">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_clew.html">scitex_clew</a></li>
+      <li class="breadcrumb-item active">scitex_clew._claim</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_clew._claim</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-02-09 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_claim.py</span>
+<span class="sd">&quot;&quot;&quot;Claim layer — link paper assertions to verification chain.</span>
+
+<span class="sd">Claims represent specific assertions in manuscripts (statistics, figures,</span>
+<span class="sd">tables) that can be traced back through the verification chain to source data.</span>
+
+<span class="sd">Five claim types:</span>
+<span class="sd">  - statistic: A numerical result (p-value, effect size, etc.)</span>
+<span class="sd">  - figure:    A figure reference linked to a recipe/image</span>
+<span class="sd">  - table:     A table reference linked to source CSV</span>
+<span class="sd">  - text:      A textual assertion linked to computational output</span>
+<span class="sd">  - value:     A specific computed value (count, percentage, etc.)</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sqlite3</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._db</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_db</span>
+
+<span class="c1"># Canonical claim types</span>
+<span class="n">CLAIM_TYPES</span> <span class="o">=</span> <span class="p">(</span><span class="s2">&quot;statistic&quot;</span><span class="p">,</span> <span class="s2">&quot;figure&quot;</span><span class="p">,</span> <span class="s2">&quot;table&quot;</span><span class="p">,</span> <span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">)</span>
+
+
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">Claim</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;A traceable assertion in a manuscript.&quot;&quot;&quot;</span>
+
+    <span class="n">claim_id</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">file_path</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">line_number</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span>
+    <span class="n">claim_type</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">claim_value</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span>
+    <span class="n">source_session</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span>
+    <span class="n">source_file</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span>
+    <span class="n">source_hash</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span>
+    <span class="n">registered_at</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">verified_at</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">status</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;registered&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">location</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Human-readable location string.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">line_number</span><span class="p">:</span>
+            <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">file_path</span><span class="si">}</span><span class="s2">:L</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">line_number</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">file_path</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">to_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;claim_id&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">claim_id</span><span class="p">,</span>
+            <span class="s2">&quot;file_path&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">file_path</span><span class="p">,</span>
+            <span class="s2">&quot;line_number&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">line_number</span><span class="p">,</span>
+            <span class="s2">&quot;claim_type&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">claim_type</span><span class="p">,</span>
+            <span class="s2">&quot;claim_value&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">claim_value</span><span class="p">,</span>
+            <span class="s2">&quot;source_session&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">source_session</span><span class="p">,</span>
+            <span class="s2">&quot;source_file&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">source_file</span><span class="p">,</span>
+            <span class="s2">&quot;source_hash&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">source_hash</span><span class="p">,</span>
+            <span class="s2">&quot;registered_at&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">registered_at</span><span class="p">,</span>
+            <span class="s2">&quot;verified_at&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">verified_at</span><span class="p">,</span>
+            <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">status</span><span class="p">,</span>
+        <span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">migrate_add_claims_table</span><span class="p">(</span><span class="n">db_path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Create claims table if not present. Safe to call multiple times.&quot;&quot;&quot;</span>
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">            CREATE TABLE IF NOT EXISTS claims (</span>
+<span class="sd">                id INTEGER PRIMARY KEY AUTOINCREMENT,</span>
+<span class="sd">                claim_id TEXT UNIQUE NOT NULL,</span>
+<span class="sd">                file_path TEXT NOT NULL,</span>
+<span class="sd">                line_number INTEGER,</span>
+<span class="sd">                claim_type TEXT NOT NULL,</span>
+<span class="sd">                claim_value TEXT,</span>
+<span class="sd">                source_session TEXT,</span>
+<span class="sd">                source_file TEXT,</span>
+<span class="sd">                source_hash TEXT,</span>
+<span class="sd">                registered_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,</span>
+<span class="sd">                verified_at TIMESTAMP,</span>
+<span class="sd">                status TEXT DEFAULT &#39;registered&#39;</span>
+<span class="sd">            )</span>
+<span class="sd">            &quot;&quot;&quot;</span>
+        <span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span><span class="s2">&quot;CREATE INDEX IF NOT EXISTS idx_claims_file ON claims(file_path)&quot;</span><span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+            <span class="s2">&quot;CREATE INDEX IF NOT EXISTS idx_claims_source ON claims(source_file)&quot;</span>
+        <span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+            <span class="s2">&quot;CREATE INDEX IF NOT EXISTS idx_claims_session ON claims(source_session)&quot;</span>
+        <span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">commit</span><span class="p">()</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_generate_claim_id</span><span class="p">(</span>
+    <span class="n">file_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">line_number</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">claim_type</span><span class="p">:</span> <span class="nb">str</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate a deterministic claim ID.&quot;&quot;&quot;</span>
+    <span class="n">loc</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">file_path</span><span class="si">}</span><span class="s2">:L</span><span class="si">{</span><span class="n">line_number</span><span class="si">}</span><span class="s2">&quot;</span> <span class="k">if</span> <span class="n">line_number</span> <span class="k">else</span> <span class="n">file_path</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">hashlib</span>
+
+    <span class="n">h</span> <span class="o">=</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">loc</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">claim_type</span><span class="si">}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">12</span><span class="p">]</span>
+    <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;claim_</span><span class="si">{</span><span class="n">h</span><span class="si">}</span><span class="s2">&quot;</span>
+
+
+<div class="viewcode-block" id="add_claim">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.add_claim">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">add_claim</span><span class="p">(</span>
+    <span class="n">file_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">claim_type</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">line_number</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">claim_value</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">source_file</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">source_session</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Claim</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Register a claim linking a manuscript assertion to the verification chain.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    file_path : str</span>
+<span class="sd">        Path to the manuscript file (e.g., paper.tex).</span>
+<span class="sd">    claim_type : str</span>
+<span class="sd">        One of: statistic, figure, table, text, value.</span>
+<span class="sd">    line_number : int, optional</span>
+<span class="sd">        Line number in the manuscript.</span>
+<span class="sd">    claim_value : str, optional</span>
+<span class="sd">        The asserted value (e.g., &quot;p = 0.003&quot;).</span>
+<span class="sd">    source_file : str, optional</span>
+<span class="sd">        Path to the source file that produced this claim.</span>
+<span class="sd">    source_session : str, optional</span>
+<span class="sd">        Session ID that produced the source.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Claim</span>
+<span class="sd">        The registered claim object.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">claim_type</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">CLAIM_TYPES</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Invalid claim_type &#39;</span><span class="si">{</span><span class="n">claim_type</span><span class="si">}</span><span class="s2">&#39;. Must be one of: </span><span class="si">{</span><span class="n">CLAIM_TYPES</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+
+    <span class="n">file_path</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+    <span class="n">claim_id</span> <span class="o">=</span> <span class="n">_generate_claim_id</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">line_number</span><span class="p">,</span> <span class="n">claim_type</span><span class="p">)</span>
+
+    <span class="c1"># Compute source hash if source_file exists</span>
+    <span class="n">source_hash</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="k">if</span> <span class="n">source_file</span><span class="p">:</span>
+        <span class="n">source_file</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">source_file</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+        <span class="n">source_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">source_file</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">source_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="kn">from</span><span class="w"> </span><span class="nn">._hash</span><span class="w"> </span><span class="kn">import</span> <span class="n">hash_file</span>
+
+            <span class="n">source_hash</span> <span class="o">=</span> <span class="n">hash_file</span><span class="p">(</span><span class="n">source_path</span><span class="p">)</span>
+
+    <span class="c1"># Auto-detect source session if not provided</span>
+    <span class="k">if</span> <span class="n">source_file</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">source_session</span><span class="p">:</span>
+        <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+        <span class="n">sessions</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">find_session_by_file</span><span class="p">(</span><span class="n">source_file</span><span class="p">,</span> <span class="n">role</span><span class="o">=</span><span class="s2">&quot;output&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">sessions</span><span class="p">:</span>
+            <span class="n">source_session</span> <span class="o">=</span> <span class="n">sessions</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+
+    <span class="n">claim</span> <span class="o">=</span> <span class="n">Claim</span><span class="p">(</span>
+        <span class="n">claim_id</span><span class="o">=</span><span class="n">claim_id</span><span class="p">,</span>
+        <span class="n">file_path</span><span class="o">=</span><span class="n">file_path</span><span class="p">,</span>
+        <span class="n">line_number</span><span class="o">=</span><span class="n">line_number</span><span class="p">,</span>
+        <span class="n">claim_type</span><span class="o">=</span><span class="n">claim_type</span><span class="p">,</span>
+        <span class="n">claim_value</span><span class="o">=</span><span class="n">claim_value</span><span class="p">,</span>
+        <span class="n">source_session</span><span class="o">=</span><span class="n">source_session</span><span class="p">,</span>
+        <span class="n">source_file</span><span class="o">=</span><span class="n">source_file</span><span class="p">,</span>
+        <span class="n">source_hash</span><span class="o">=</span><span class="n">source_hash</span><span class="p">,</span>
+    <span class="p">)</span>
+
+    <span class="c1"># Store in database</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">_ensure_claims_table</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">            INSERT OR REPLACE INTO claims</span>
+<span class="sd">                (claim_id, file_path, line_number, claim_type, claim_value,</span>
+<span class="sd">                 source_session, source_file, source_hash, status)</span>
+<span class="sd">            VALUES (?, ?, ?, ?, ?, ?, ?, ?, &#39;registered&#39;)</span>
+<span class="sd">            &quot;&quot;&quot;</span><span class="p">,</span>
+            <span class="p">(</span>
+                <span class="n">claim</span><span class="o">.</span><span class="n">claim_id</span><span class="p">,</span>
+                <span class="n">claim</span><span class="o">.</span><span class="n">file_path</span><span class="p">,</span>
+                <span class="n">claim</span><span class="o">.</span><span class="n">line_number</span><span class="p">,</span>
+                <span class="n">claim</span><span class="o">.</span><span class="n">claim_type</span><span class="p">,</span>
+                <span class="n">claim</span><span class="o">.</span><span class="n">claim_value</span><span class="p">,</span>
+                <span class="n">claim</span><span class="o">.</span><span class="n">source_session</span><span class="p">,</span>
+                <span class="n">claim</span><span class="o">.</span><span class="n">source_file</span><span class="p">,</span>
+                <span class="n">claim</span><span class="o">.</span><span class="n">source_hash</span><span class="p">,</span>
+            <span class="p">),</span>
+        <span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">commit</span><span class="p">()</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+    <span class="c1"># Auto-export the canonical claims.json so consumers (verifier,</span>
+    <span class="c1"># scitex-writer, human eyes) can read a stable artifact without</span>
+    <span class="c1"># talking to sqlite. Default ON; opt out with</span>
+    <span class="c1"># SCITEX_CLEW_AUTO_EXPORT_CLAIMS=0 if you&#39;re streaming thousands of</span>
+    <span class="c1"># claims and the per-call rewrite cost matters. The cost is O(N×K)</span>
+    <span class="c1"># where N is total claims in the DB and K is rewrite size — for</span>
+    <span class="c1"># typical research papers (N &lt; 100, K &lt; 50 KB) it&#39;s negligible.</span>
+    <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;SCITEX_CLEW_AUTO_EXPORT_CLAIMS&quot;</span><span class="p">,</span> <span class="s2">&quot;1&quot;</span><span class="p">)</span> <span class="o">!=</span> <span class="s2">&quot;0&quot;</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">export_claims_json</span><span class="p">()</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>  <span class="c1"># noqa: BLE001</span>
+            <span class="c1"># Auto-export is a convenience layer — must not break the</span>
+            <span class="c1"># add_claim primary path if e.g. the runtime/ dir is</span>
+            <span class="c1"># read-only on this host. Log and continue. The user can</span>
+            <span class="c1"># call export_claims_json() explicitly to surface failures.</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_w</span>
+
+            <span class="n">_w</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;scitex_clew auto-export of claims.json failed &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;(set SCITEX_CLEW_AUTO_EXPORT_CLAIMS=0 to silence): &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">exc</span><span class="si">!r}</span><span class="s2">&quot;</span><span class="p">,</span>
+                <span class="ne">RuntimeWarning</span><span class="p">,</span>
+                <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+            <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">claim</span></div>
+
+
+
+<div class="viewcode-block" id="export_claims_json">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.export_claims_json">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">export_claims_json</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">file_path_filter</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">read_only</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Export every registered claim to a canonical JSON artifact.</span>
+
+<span class="sd">    The exported file is the single human-readable + machine-consumable</span>
+<span class="sd">    view of the claims table in ``db.sqlite``. The DB remains the</span>
+<span class="sd">    source of truth; this JSON is a regenerable artifact.</span>
+
+<span class="sd">    Path resolution (mirrors :func:`scitex_clew._db._core._default_db_path`)::</span>
+
+<span class="sd">        1. Explicit ``path`` argument.</span>
+<span class="sd">        2. ``$SCITEX_CLEW_CLAIMS_JSON`` env var (escape hatch).</span>
+<span class="sd">        3. ``&lt;project_root&gt;/.scitex/clew/runtime/claims.json``</span>
+<span class="sd">           (project root = nearest ancestor dir with ``.git`` or</span>
+<span class="sd">           ``pyproject.toml``; falls back to cwd if none found).</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str | Path, optional</span>
+<span class="sd">        Override the resolved path. Useful for tests / one-off dumps.</span>
+<span class="sd">    file_path_filter : str, optional</span>
+<span class="sd">        When set, only claims registered against this manuscript file</span>
+<span class="sd">        path are exported. Default: every claim in the DB.</span>
+<span class="sd">    read_only : bool, optional</span>
+<span class="sd">        After writing, ``chmod 0o444`` the file so accidental edits</span>
+<span class="sd">        fail loudly at the OS layer. Default True (the file IS</span>
+<span class="sd">        derived). Set False for tests that need to mutate the file.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Path</span>
+<span class="sd">        The path the artifact was written to (absolute).</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; import scitex_clew as clew</span>
+<span class="sd">    &gt;&gt;&gt; clew.add_claim(&quot;paper.tex&quot;, &quot;value&quot;, 42, &quot;0.94&quot;, source_file=&quot;r.csv&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; # claims.json now auto-exported under ./.scitex/clew/runtime/</span>
+<span class="sd">    &gt;&gt;&gt; clew.export_claims_json()  # idempotent — re-emit on demand</span>
+<span class="sd">    PosixPath(&#39;.../.scitex/clew/runtime/claims.json&#39;)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._db</span><span class="w"> </span><span class="kn">import</span> <span class="n">_core</span> <span class="k">as</span> <span class="n">_db_core</span>
+
+    <span class="k">if</span> <span class="n">path</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">env_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;SCITEX_CLEW_CLAIMS_JSON&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">env_path</span><span class="p">:</span>
+            <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">env_path</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">path</span> <span class="o">=</span> <span class="n">_db_core</span><span class="o">.</span><span class="n">_default_claims_json_path</span><span class="p">(</span>
+                <span class="n">_db_core</span><span class="o">.</span><span class="n">_find_project_root</span><span class="p">()</span>
+            <span class="p">)</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+    <span class="n">path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="n">claims</span> <span class="o">=</span> <span class="n">list_claims</span><span class="p">(</span><span class="n">file_path</span><span class="o">=</span><span class="n">file_path_filter</span><span class="p">,</span> <span class="n">limit</span><span class="o">=</span><span class="mi">10_000</span><span class="p">)</span>
+    <span class="n">payload</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;_note&quot;</span><span class="p">:</span> <span class="p">(</span>
+            <span class="s2">&quot;AUTO-GENERATED by scitex_clew.export_claims_json() from &quot;</span>
+            <span class="s2">&quot;db.sqlite. Do NOT edit by hand — re-emit by calling &quot;</span>
+            <span class="s2">&quot;scitex_clew.export_claims_json() (default-on after every &quot;</span>
+            <span class="s2">&quot;clew.add_claim()) or by re-running your pipeline.&quot;</span>
+        <span class="p">),</span>
+        <span class="s2">&quot;claims_count&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">claims</span><span class="p">),</span>
+        <span class="s2">&quot;claims&quot;</span><span class="p">:</span> <span class="p">[</span><span class="n">c</span><span class="o">.</span><span class="n">to_dict</span><span class="p">()</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">claims</span><span class="p">],</span>
+    <span class="p">}</span>
+
+    <span class="c1"># Clear any pre-existing read-only bit before rewriting.</span>
+    <span class="k">if</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">path</span><span class="o">.</span><span class="n">chmod</span><span class="p">(</span><span class="mo">0o644</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+    <span class="n">path</span><span class="o">.</span><span class="n">write_text</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="n">payload</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="nb">str</span><span class="p">))</span>
+
+    <span class="k">if</span> <span class="n">read_only</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">path</span><span class="o">.</span><span class="n">chmod</span><span class="p">(</span><span class="mo">0o444</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
+            <span class="c1"># Best-effort — on filesystems that don&#39;t support unix</span>
+            <span class="c1"># perms (e.g. some Windows mounts) this is a no-op.</span>
+            <span class="k">pass</span>
+
+    <span class="k">return</span> <span class="n">path</span></div>
+
+
+
+<div class="viewcode-block" id="list_claims">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.list_claims">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">list_claims</span><span class="p">(</span>
+    <span class="n">file_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">claim_type</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">status</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">limit</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">100</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Claim</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;List registered claims with optional filters.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    file_path : str, optional</span>
+<span class="sd">        Filter by manuscript file path.</span>
+<span class="sd">    claim_type : str, optional</span>
+<span class="sd">        Filter by claim type.</span>
+<span class="sd">    status : str, optional</span>
+<span class="sd">        Filter by verification status.</span>
+<span class="sd">    limit : int</span>
+<span class="sd">        Maximum number of claims to return.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list of Claim</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">_ensure_claims_table</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
+
+    <span class="n">query</span> <span class="o">=</span> <span class="s2">&quot;SELECT * FROM claims WHERE 1=1&quot;</span>
+    <span class="n">params</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">if</span> <span class="n">file_path</span><span class="p">:</span>
+        <span class="n">file_path</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+        <span class="n">query</span> <span class="o">+=</span> <span class="s2">&quot; AND file_path = ?&quot;</span>
+        <span class="n">params</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">claim_type</span><span class="p">:</span>
+        <span class="n">query</span> <span class="o">+=</span> <span class="s2">&quot; AND claim_type = ?&quot;</span>
+        <span class="n">params</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">claim_type</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">status</span><span class="p">:</span>
+        <span class="n">query</span> <span class="o">+=</span> <span class="s2">&quot; AND status = ?&quot;</span>
+        <span class="n">params</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">status</span><span class="p">)</span>
+
+    <span class="n">query</span> <span class="o">+=</span> <span class="s2">&quot; ORDER BY file_path, line_number LIMIT ?&quot;</span>
+    <span class="n">params</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">limit</span><span class="p">)</span>
+
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="n">conn</span><span class="o">.</span><span class="n">row_factory</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">Row</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">rows</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span><span class="n">query</span><span class="p">,</span> <span class="n">params</span><span class="p">)</span><span class="o">.</span><span class="n">fetchall</span><span class="p">()</span>
+        <span class="k">return</span> <span class="p">[</span>
+            <span class="n">Claim</span><span class="p">(</span>
+                <span class="n">claim_id</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;claim_id&quot;</span><span class="p">],</span>
+                <span class="n">file_path</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;file_path&quot;</span><span class="p">],</span>
+                <span class="n">line_number</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;line_number&quot;</span><span class="p">],</span>
+                <span class="n">claim_type</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;claim_type&quot;</span><span class="p">],</span>
+                <span class="n">claim_value</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;claim_value&quot;</span><span class="p">],</span>
+                <span class="n">source_session</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;source_session&quot;</span><span class="p">],</span>
+                <span class="n">source_file</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;source_file&quot;</span><span class="p">],</span>
+                <span class="n">source_hash</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;source_hash&quot;</span><span class="p">],</span>
+                <span class="n">registered_at</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;registered_at&quot;</span><span class="p">],</span>
+                <span class="n">verified_at</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;verified_at&quot;</span><span class="p">],</span>
+                <span class="n">status</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">],</span>
+            <span class="p">)</span>
+            <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">rows</span>
+        <span class="p">]</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="verify_claim">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.verify_claim">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">verify_claim</span><span class="p">(</span><span class="n">claim_id_or_location</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Verify a specific claim by checking its source against the verification chain.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    claim_id_or_location : str</span>
+<span class="sd">        Either a claim_id or a location string like &quot;paper.tex:L42&quot;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Verification result with claim details and chain status.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">_ensure_claims_table</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
+
+    <span class="n">claim</span> <span class="o">=</span> <span class="n">_resolve_claim</span><span class="p">(</span><span class="n">claim_id_or_location</span><span class="p">,</span> <span class="n">db</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">claim</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;not_found&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;message&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;No claim found for &#39;</span><span class="si">{</span><span class="n">claim_id_or_location</span><span class="si">}</span><span class="s2">&#39;&quot;</span><span class="p">,</span>
+        <span class="p">}</span>
+
+    <span class="n">result</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;claim&quot;</span><span class="p">:</span> <span class="n">claim</span><span class="o">.</span><span class="n">to_dict</span><span class="p">(),</span>
+        <span class="s2">&quot;source_verified&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+        <span class="s2">&quot;chain_verified&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+        <span class="s2">&quot;details&quot;</span><span class="p">:</span> <span class="p">[],</span>
+    <span class="p">}</span>
+
+    <span class="c1"># Check source file exists and hash matches</span>
+    <span class="k">if</span> <span class="n">claim</span><span class="o">.</span><span class="n">source_file</span><span class="p">:</span>
+        <span class="n">source_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">claim</span><span class="o">.</span><span class="n">source_file</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">source_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;details&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Source file missing: </span><span class="si">{</span><span class="n">claim</span><span class="o">.</span><span class="n">source_file</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">_update_claim_status</span><span class="p">(</span><span class="n">claim</span><span class="o">.</span><span class="n">claim_id</span><span class="p">,</span> <span class="s2">&quot;missing&quot;</span><span class="p">,</span> <span class="n">db</span><span class="p">)</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;claim&quot;</span><span class="p">][</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;missing&quot;</span>
+            <span class="k">return</span> <span class="n">result</span>
+
+        <span class="kn">from</span><span class="w"> </span><span class="nn">._hash</span><span class="w"> </span><span class="kn">import</span> <span class="n">hash_file</span>
+
+        <span class="n">current_hash</span> <span class="o">=</span> <span class="n">hash_file</span><span class="p">(</span><span class="n">source_path</span><span class="p">)</span>
+        <span class="k">if</span> <span class="p">(</span>
+            <span class="n">claim</span><span class="o">.</span><span class="n">source_hash</span>
+            <span class="ow">and</span> <span class="n">current_hash</span><span class="p">[:</span> <span class="nb">len</span><span class="p">(</span><span class="n">claim</span><span class="o">.</span><span class="n">source_hash</span><span class="p">)]</span>
+            <span class="o">==</span> <span class="n">claim</span><span class="o">.</span><span class="n">source_hash</span><span class="p">[:</span> <span class="nb">len</span><span class="p">(</span><span class="n">current_hash</span><span class="p">)]</span>
+        <span class="p">):</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;source_verified&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;details&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;Source file hash matches&quot;</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;details&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Source hash mismatch: stored=</span><span class="si">{</span><span class="n">claim</span><span class="o">.</span><span class="n">source_hash</span><span class="si">}</span><span class="s2">, current=</span><span class="si">{</span><span class="n">current_hash</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+            <span class="n">_update_claim_status</span><span class="p">(</span><span class="n">claim</span><span class="o">.</span><span class="n">claim_id</span><span class="p">,</span> <span class="s2">&quot;mismatch&quot;</span><span class="p">,</span> <span class="n">db</span><span class="p">)</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;claim&quot;</span><span class="p">][</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;mismatch&quot;</span>
+            <span class="k">return</span> <span class="n">result</span>
+
+    <span class="c1"># Verify the chain if we have a source file</span>
+    <span class="k">if</span> <span class="n">claim</span><span class="o">.</span><span class="n">source_file</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="n">verify_chain</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">chain</span> <span class="o">=</span> <span class="n">verify_chain</span><span class="p">(</span><span class="n">claim</span><span class="o">.</span><span class="n">source_file</span><span class="p">)</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;chain_verified&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">chain</span><span class="o">.</span><span class="n">is_verified</span>
+            <span class="k">if</span> <span class="n">chain</span><span class="o">.</span><span class="n">is_verified</span><span class="p">:</span>
+                <span class="n">result</span><span class="p">[</span><span class="s2">&quot;details&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Chain verified (</span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">chain</span><span class="o">.</span><span class="n">runs</span><span class="p">)</span><span class="si">}</span><span class="s2"> runs)&quot;</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">result</span><span class="p">[</span><span class="s2">&quot;details&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="sa">f</span><span class="s2">&quot;Chain verification failed (</span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">chain</span><span class="o">.</span><span class="n">failed_runs</span><span class="p">)</span><span class="si">}</span><span class="s2"> failed runs)&quot;</span>
+                <span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;details&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Chain verification error: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Update status</span>
+    <span class="k">if</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;source_verified&quot;</span><span class="p">]</span> <span class="ow">and</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;chain_verified&quot;</span><span class="p">]:</span>
+        <span class="n">_update_claim_status</span><span class="p">(</span><span class="n">claim</span><span class="o">.</span><span class="n">claim_id</span><span class="p">,</span> <span class="s2">&quot;verified&quot;</span><span class="p">,</span> <span class="n">db</span><span class="p">)</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;claim&quot;</span><span class="p">][</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;verified&quot;</span>
+    <span class="k">elif</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;source_verified&quot;</span><span class="p">]:</span>
+        <span class="n">_update_claim_status</span><span class="p">(</span><span class="n">claim</span><span class="o">.</span><span class="n">claim_id</span><span class="p">,</span> <span class="s2">&quot;partial&quot;</span><span class="p">,</span> <span class="n">db</span><span class="p">)</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;claim&quot;</span><span class="p">][</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;partial&quot;</span>
+
+    <span class="k">return</span> <span class="n">result</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">verify_claims_dag</span><span class="p">(</span>
+    <span class="n">file_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">claim_type</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">DAGVerification</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Build a unified DAG from all claims, tracing each back to its source.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    file_path : str, optional</span>
+<span class="sd">        Filter claims by manuscript file path.</span>
+<span class="sd">    claim_type : str, optional</span>
+<span class="sd">        Filter claims by type.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    DAGVerification</span>
+<span class="sd">        Unified verification result covering all claim source chains merged.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="n">DAGVerification</span><span class="p">,</span> <span class="n">VerificationStatus</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._dag</span><span class="w"> </span><span class="kn">import</span> <span class="n">verify_dag</span>
+
+    <span class="n">claims</span> <span class="o">=</span> <span class="n">list_claims</span><span class="p">(</span><span class="n">file_path</span><span class="o">=</span><span class="n">file_path</span><span class="p">,</span> <span class="n">claim_type</span><span class="o">=</span><span class="n">claim_type</span><span class="p">)</span>
+
+    <span class="c1"># Collect unique source files from claims</span>
+    <span class="n">source_files</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">claims</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">source_file</span> <span class="ow">and</span> <span class="n">c</span><span class="o">.</span><span class="n">source_file</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">source_files</span><span class="p">:</span>
+            <span class="n">source_files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">source_file</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">source_files</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">DAGVerification</span><span class="p">(</span>
+            <span class="n">target_files</span><span class="o">=</span><span class="p">[],</span>
+            <span class="n">runs</span><span class="o">=</span><span class="p">[],</span>
+            <span class="n">edges</span><span class="o">=</span><span class="p">[],</span>
+            <span class="n">status</span><span class="o">=</span><span class="n">VerificationStatus</span><span class="o">.</span><span class="n">UNKNOWN</span><span class="p">,</span>
+            <span class="n">topological_order</span><span class="o">=</span><span class="p">[],</span>
+        <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">verify_dag</span><span class="p">(</span><span class="n">source_files</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_resolve_claim</span><span class="p">(</span><span class="n">identifier</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">db</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Claim</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resolve a claim by ID or location string.&quot;&quot;&quot;</span>
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="n">conn</span><span class="o">.</span><span class="n">row_factory</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">Row</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="c1"># Try claim_id first</span>
+        <span class="n">row</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+            <span class="s2">&quot;SELECT * FROM claims WHERE claim_id = ?&quot;</span><span class="p">,</span> <span class="p">(</span><span class="n">identifier</span><span class="p">,)</span>
+        <span class="p">)</span><span class="o">.</span><span class="n">fetchone</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">row</span><span class="p">:</span>
+            <span class="c1"># Try location format: file.tex:L42</span>
+            <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(.+):L(\d+)$&quot;</span><span class="p">,</span> <span class="n">identifier</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+                <span class="n">fpath</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+                <span class="n">line</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">2</span><span class="p">))</span>
+                <span class="n">row</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+                    <span class="s2">&quot;SELECT * FROM claims WHERE file_path = ? AND line_number = ?&quot;</span><span class="p">,</span>
+                    <span class="p">(</span><span class="n">fpath</span><span class="p">,</span> <span class="n">line</span><span class="p">),</span>
+                <span class="p">)</span><span class="o">.</span><span class="n">fetchone</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">row</span><span class="p">:</span>
+            <span class="c1"># Try file path only (returns first match)</span>
+            <span class="n">fpath</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">identifier</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+            <span class="n">row</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+                <span class="s2">&quot;SELECT * FROM claims WHERE file_path = ? ORDER BY line_number LIMIT 1&quot;</span><span class="p">,</span>
+                <span class="p">(</span><span class="n">fpath</span><span class="p">,),</span>
+            <span class="p">)</span><span class="o">.</span><span class="n">fetchone</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="n">row</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">Claim</span><span class="p">(</span>
+                <span class="n">claim_id</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;claim_id&quot;</span><span class="p">],</span>
+                <span class="n">file_path</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;file_path&quot;</span><span class="p">],</span>
+                <span class="n">line_number</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;line_number&quot;</span><span class="p">],</span>
+                <span class="n">claim_type</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;claim_type&quot;</span><span class="p">],</span>
+                <span class="n">claim_value</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;claim_value&quot;</span><span class="p">],</span>
+                <span class="n">source_session</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;source_session&quot;</span><span class="p">],</span>
+                <span class="n">source_file</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;source_file&quot;</span><span class="p">],</span>
+                <span class="n">source_hash</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;source_hash&quot;</span><span class="p">],</span>
+                <span class="n">registered_at</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;registered_at&quot;</span><span class="p">],</span>
+                <span class="n">verified_at</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;verified_at&quot;</span><span class="p">],</span>
+                <span class="n">status</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">],</span>
+            <span class="p">)</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_update_claim_status</span><span class="p">(</span><span class="n">claim_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">status</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">db</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Update claim verification status.&quot;&quot;&quot;</span>
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+            <span class="s2">&quot;UPDATE claims SET status = ?, verified_at = ? WHERE claim_id = ?&quot;</span><span class="p">,</span>
+            <span class="p">(</span><span class="n">status</span><span class="p">,</span> <span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">isoformat</span><span class="p">(),</span> <span class="n">claim_id</span><span class="p">),</span>
+        <span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">commit</span><span class="p">()</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_ensure_claims_table</span><span class="p">(</span><span class="n">db</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Ensure the claims table exists (run migration).&quot;&quot;&quot;</span>
+    <span class="n">migrate_add_claims_table</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">format_claims</span><span class="p">(</span><span class="n">claims</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Claim</span><span class="p">],</span> <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Format claims list for terminal display.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">claims</span><span class="p">:</span>
+        <span class="k">return</span> <span class="s2">&quot;No claims registered.&quot;</span>
+
+    <span class="n">lines</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">status_icons</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;registered&quot;</span><span class="p">:</span> <span class="s2">&quot;</span><span class="se">\u25cb</span><span class="s2">&quot;</span><span class="p">,</span>  <span class="c1"># ○</span>
+        <span class="s2">&quot;verified&quot;</span><span class="p">:</span> <span class="s2">&quot;</span><span class="se">\u2713</span><span class="s2">&quot;</span><span class="p">,</span>  <span class="c1"># ✓</span>
+        <span class="s2">&quot;mismatch&quot;</span><span class="p">:</span> <span class="s2">&quot;</span><span class="se">\u2717</span><span class="s2">&quot;</span><span class="p">,</span>  <span class="c1"># ✗</span>
+        <span class="s2">&quot;missing&quot;</span><span class="p">:</span> <span class="s2">&quot;?&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;partial&quot;</span><span class="p">:</span> <span class="s2">&quot;~&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">claims</span><span class="p">:</span>
+        <span class="n">icon</span> <span class="o">=</span> <span class="n">status_icons</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">status</span><span class="p">,</span> <span class="s2">&quot;?&quot;</span><span class="p">)</span>
+        <span class="n">loc</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">location</span>
+        <span class="n">val</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot; = </span><span class="si">{</span><span class="n">c</span><span class="o">.</span><span class="n">claim_value</span><span class="si">}</span><span class="s2">&quot;</span> <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">claim_value</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  </span><span class="si">{</span><span class="n">icon</span><span class="si">}</span><span class="s2"> [</span><span class="si">{</span><span class="n">c</span><span class="o">.</span><span class="n">claim_type</span><span class="si">}</span><span class="s2">] </span><span class="si">{</span><span class="n">loc</span><span class="si">}{</span><span class="n">val</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">verbose</span> <span class="ow">and</span> <span class="n">c</span><span class="o">.</span><span class="n">source_file</span><span class="p">:</span>
+            <span class="n">src</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">source_file</span><span class="p">)</span><span class="o">.</span><span class="n">name</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;      source: </span><span class="si">{</span><span class="n">src</span><span class="si">}</span><span class="s2"> (session: </span><span class="si">{</span><span class="n">c</span><span class="o">.</span><span class="n">source_session</span><span class="w"> </span><span class="ow">or</span><span class="w"> </span><span class="s1">&#39;unknown&#39;</span><span class="si">}</span><span class="s2">)&quot;</span>
+            <span class="p">)</span>
+
+    <span class="k">return</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;CLAIM_TYPES&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;Claim&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;add_claim&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;list_claims&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;verify_claim&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;verify_claims_dag&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;format_claims&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;migrate_add_claims_table&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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new file mode 100644
index 000000000..e6cf5a0ff
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@@ -0,0 +1,775 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_clew._examples &mdash; SciTeX v0.0.0</title>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
+      </div>
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+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_clew.html">scitex_clew</a></li>
+      <li class="breadcrumb-item active">scitex_clew._examples</li>
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+      </li>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_clew._examples</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;Create Clew example pipeline in a target directory.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">shutil</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_find_examples_dir</span><span class="p">(</span><span class="n">variant</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;sequential&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Locate the bundled Clew examples directory.</span>
+
+<span class="sd">    Tries (in order):</span>
+<span class="sd">    1. Source repo: ../../../examples/&lt;variant&gt;/   (editable install or git clone)</span>
+<span class="sd">    2. Docker mount: /scitex-python/examples/scitex/clew</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># __file__ = &lt;repo&gt;/src/scitex_clew/_examples.py — 3 parents up = &lt;repo&gt;.</span>
+    <span class="n">repo_root</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span><span class="o">.</span><span class="n">parents</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+    <span class="n">candidates</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="n">repo_root</span> <span class="o">/</span> <span class="s2">&quot;examples&quot;</span> <span class="o">/</span> <span class="n">variant</span><span class="p">,</span>
+        <span class="n">Path</span><span class="p">(</span><span class="s2">&quot;/scitex-python/examples/scitex/clew&quot;</span><span class="p">)</span> <span class="o">/</span> <span class="n">variant</span><span class="p">,</span>
+    <span class="p">]</span>
+    <span class="k">for</span> <span class="n">candidate</span> <span class="ow">in</span> <span class="n">candidates</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">candidate</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="n">candidate</span><span class="o">.</span><span class="n">is_dir</span><span class="p">():</span>
+            <span class="k">return</span> <span class="n">candidate</span>
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<div class="viewcode-block" id="init_examples">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.init_examples">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">init_examples</span><span class="p">(</span>
+    <span class="n">dest</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="n">variant</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;sequential&quot;</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">find_examples_dir</span><span class="o">=</span><span class="n">_find_examples_dir</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Copy Clew example scripts to a destination directory.</span>
+
+<span class="sd">    Copies only the runnable scripts (.py, .sh) and README — not</span>
+<span class="sd">    the output directories.  Users run ``00_run_all.sh`` themselves</span>
+<span class="sd">    to generate outputs and populate the verification database.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    dest : str or Path</span>
+<span class="sd">        Destination directory.  Created if it does not exist.</span>
+<span class="sd">        Existing script files are overwritten.</span>
+<span class="sd">    variant : str, optional</span>
+<span class="sd">        Example variant: &quot;sequential&quot; (default) or &quot;multi_parent&quot;.</span>
+<span class="sd">    find_examples_dir : callable, optional</span>
+<span class="sd">        Locator callable ``(variant: str) -&gt; Optional[Path]`` used to</span>
+<span class="sd">        resolve the bundled examples source. Production callers should</span>
+<span class="sd">        not pass this; it is the canonical PA-306 §1 DI seam — tests</span>
+<span class="sd">        inject a hand-rolled fake that returns a ``tmp_path``-rooted</span>
+<span class="sd">        directory or ``None``.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        ``{&quot;path&quot;: str, &quot;files&quot;: list[str], &quot;file_count&quot;: int, &quot;variant&quot;: str}``</span>
+
+<span class="sd">    Raises</span>
+<span class="sd">    ------</span>
+<span class="sd">    FileNotFoundError</span>
+<span class="sd">        If the bundled examples cannot be located.</span>
+<span class="sd">    ValueError</span>
+<span class="sd">        If variant is not recognized.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">valid_variants</span> <span class="o">=</span> <span class="p">(</span><span class="s2">&quot;sequential&quot;</span><span class="p">,</span> <span class="s2">&quot;multi_parent&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">variant</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">valid_variants</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Unknown variant </span><span class="si">{</span><span class="n">variant</span><span class="si">!r}</span><span class="s2">. Choose from: </span><span class="si">{</span><span class="n">valid_variants</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="n">src_dir</span> <span class="o">=</span> <span class="n">find_examples_dir</span><span class="p">(</span><span class="n">variant</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">src_dir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">FileNotFoundError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Clew example variant </span><span class="si">{</span><span class="n">variant</span><span class="si">!r}</span><span class="s2"> not found. &quot;</span>
+            <span class="s2">&quot;Examples live at ~/proj/scitex-clew/examples/&lt;variant&gt;/ — &quot;</span>
+            <span class="s2">&quot;install editably (`pip install -e .`) or clone the repo.&quot;</span>
+        <span class="p">)</span>
+
+    <span class="n">dest</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">dest</span><span class="p">)</span>
+    <span class="n">dest</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="c1"># Copy only scripts and docs, skip _out directories</span>
+    <span class="n">copied</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">src_file</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">src_dir</span><span class="o">.</span><span class="n">iterdir</span><span class="p">()):</span>
+        <span class="k">if</span> <span class="n">src_file</span><span class="o">.</span><span class="n">is_dir</span><span class="p">():</span>
+            <span class="k">continue</span>
+        <span class="n">dst_file</span> <span class="o">=</span> <span class="n">dest</span> <span class="o">/</span> <span class="n">src_file</span><span class="o">.</span><span class="n">name</span>
+        <span class="n">shutil</span><span class="o">.</span><span class="n">copy2</span><span class="p">(</span><span class="n">src_file</span><span class="p">,</span> <span class="n">dst_file</span><span class="p">)</span>
+        <span class="n">copied</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">src_file</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">dest</span><span class="p">),</span>
+        <span class="s2">&quot;files&quot;</span><span class="p">:</span> <span class="n">copied</span><span class="p">,</span>
+        <span class="s2">&quot;file_count&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">copied</span><span class="p">),</span>
+        <span class="s2">&quot;variant&quot;</span><span class="p">:</span> <span class="n">variant</span><span class="p">,</span>
+    <span class="p">}</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_clew.html">scitex_clew</a></li>
+      <li class="breadcrumb-item active">scitex_clew._hash</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_clew._hash</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-02-01 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_hash.py</span>
+<span class="sd">&quot;&quot;&quot;File and directory hashing utilities for verification.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">hashlib</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">Union</span>
+
+
+<div class="viewcode-block" id="hash_file">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.hash_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">hash_file</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">algorithm</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;sha256&quot;</span><span class="p">,</span>
+    <span class="n">chunk_size</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">8192</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Compute hash of a file.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to the file to hash</span>
+<span class="sd">    algorithm : str, optional</span>
+<span class="sd">        Hash algorithm (default: sha256)</span>
+<span class="sd">    chunk_size : int, optional</span>
+<span class="sd">        Size of chunks to read (default: 8192)</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        Hexadecimal hash string (first 32 characters)</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; hash_file(&quot;data.csv&quot;)</span>
+<span class="sd">    &#39;a1b2c3d4e5f6...&#39;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">raise</span> <span class="ne">FileNotFoundError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;File not found: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="n">hasher</span> <span class="o">=</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">new</span><span class="p">(</span><span class="n">algorithm</span><span class="p">)</span>
+    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+        <span class="k">while</span> <span class="n">chunk</span> <span class="o">:=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">chunk_size</span><span class="p">):</span>
+            <span class="n">hasher</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">chunk</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">hasher</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span></div>
+
+
+
+<div class="viewcode-block" id="hash_directory">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.hash_directory">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">hash_directory</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">pattern</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;*&quot;</span><span class="p">,</span>
+    <span class="n">recursive</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">algorithm</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;sha256&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Compute hashes for all files in a directory.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Directory path</span>
+<span class="sd">    pattern : str, optional</span>
+<span class="sd">        Glob pattern for files (default: &quot;*&quot;)</span>
+<span class="sd">    recursive : bool, optional</span>
+<span class="sd">        Whether to search recursively (default: True)</span>
+<span class="sd">    algorithm : str, optional</span>
+<span class="sd">        Hash algorithm (default: sha256)</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Mapping of relative paths to hashes</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; hash_directory(&quot;./data/&quot;)</span>
+<span class="sd">    {&#39;input.csv&#39;: &#39;a1b2...&#39;, &#39;config.yaml&#39;: &#39;c3d4...&#39;}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">is_dir</span><span class="p">():</span>
+        <span class="k">raise</span> <span class="ne">NotADirectoryError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Not a directory: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="n">glob_method</span> <span class="o">=</span> <span class="n">path</span><span class="o">.</span><span class="n">rglob</span> <span class="k">if</span> <span class="n">recursive</span> <span class="k">else</span> <span class="n">path</span><span class="o">.</span><span class="n">glob</span>
+    <span class="n">hashes</span> <span class="o">=</span> <span class="p">{}</span>
+
+    <span class="k">for</span> <span class="n">file_path</span> <span class="ow">in</span> <span class="n">glob_method</span><span class="p">(</span><span class="n">pattern</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">file_path</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+            <span class="n">rel_path</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">file_path</span><span class="o">.</span><span class="n">relative_to</span><span class="p">(</span><span class="n">path</span><span class="p">))</span>
+            <span class="n">hashes</span><span class="p">[</span><span class="n">rel_path</span><span class="p">]</span> <span class="o">=</span> <span class="n">hash_file</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">algorithm</span><span class="o">=</span><span class="n">algorithm</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">hashes</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">hash_files</span><span class="p">(</span>
+    <span class="n">paths</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]],</span>
+    <span class="n">algorithm</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;sha256&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Compute hashes for a list of files.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    paths : list of str or Path</span>
+<span class="sd">        List of file paths</span>
+<span class="sd">    algorithm : str, optional</span>
+<span class="sd">        Hash algorithm (default: sha256)</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Mapping of paths to hashes</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">hashes</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">paths</span><span class="p">:</span>
+        <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="n">path</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+            <span class="n">hashes</span><span class="p">[</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">)]</span> <span class="o">=</span> <span class="n">hash_file</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">algorithm</span><span class="o">=</span><span class="n">algorithm</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">hashes</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">combine_hashes</span><span class="p">(</span><span class="n">hashes</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">],</span> <span class="n">algorithm</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;sha256&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Combine multiple hashes into a single hash.</span>
+
+<span class="sd">    Creates a deterministic combined hash from a dictionary of hashes.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    hashes : dict</span>
+<span class="sd">        Mapping of names to hashes</span>
+<span class="sd">    algorithm : str, optional</span>
+<span class="sd">        Hash algorithm (default: sha256)</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        Combined hash (first 32 characters)</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; hashes = {&#39;input.csv&#39;: &#39;a1b2...&#39;, &#39;script.py&#39;: &#39;c3d4...&#39;}</span>
+<span class="sd">    &gt;&gt;&gt; combine_hashes(hashes)</span>
+<span class="sd">    &#39;e5f6g7h8...&#39;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">hasher</span> <span class="o">=</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">new</span><span class="p">(</span><span class="n">algorithm</span><span class="p">)</span>
+
+    <span class="c1"># Sort by key for deterministic ordering</span>
+    <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">hashes</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
+        <span class="n">hasher</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">key</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">hashes</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span>
+
+    <span class="k">return</span> <span class="n">hasher</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">verify_hash</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">expected_hash</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">algorithm</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;sha256&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Verify that a file matches an expected hash.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to the file</span>
+<span class="sd">    expected_hash : str</span>
+<span class="sd">        Expected hash value</span>
+<span class="sd">    algorithm : str, optional</span>
+<span class="sd">        Hash algorithm (default: sha256)</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    bool</span>
+<span class="sd">        True if hash matches, False otherwise</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">actual_hash</span> <span class="o">=</span> <span class="n">hash_file</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">algorithm</span><span class="o">=</span><span class="n">algorithm</span><span class="p">)</span>
+        <span class="c1"># Compare only the length of expected_hash (may be truncated)</span>
+        <span class="k">return</span> <span class="n">actual_hash</span><span class="p">[:</span> <span class="nb">len</span><span class="p">(</span><span class="n">expected_hash</span><span class="p">)]</span> <span class="o">==</span> <span class="n">expected_hash</span>
+    <span class="k">except</span> <span class="ne">FileNotFoundError</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+        </div>
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+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
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+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_clew/_observers/_session.html b/src/scitex/_sphinx_html/_modules/scitex_clew/_observers/_session.html
new file mode 100644
index 000000000..3f670c64c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_clew/_observers/_session.html
@@ -0,0 +1,792 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_clew._observers._session &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#figure-saving">Figure Saving</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#available-tests">Available Tests</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
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+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../../scitex_clew.html">scitex_clew</a></li>
+      <li class="breadcrumb-item active">scitex_clew._observers._session</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_clew._observers._session</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;Session lifecycle hooks for scitex-clew.</span>
+
+<span class="sd">These thin wrappers are invoked by ``@scitex.session`` (or any equivalent</span>
+<span class="sd">session manager) at the start and end of a run. They delegate to the</span>
+<span class="sd">``scitex_clew._tracker`` machinery so that a run record is opened on start</span>
+<span class="sd">and finalized (with a combined hash) on close.</span>
+
+<span class="sd">They import only scitex-clew internals; no scitex-io dependency is needed.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._logging</span><span class="w"> </span><span class="kn">import</span> <span class="n">getLogger</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._tracker</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_tracker</span><span class="p">,</span> <span class="n">start_tracking</span><span class="p">,</span> <span class="n">stop_tracking</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+
+<div class="viewcode-block" id="on_session_start">
+<a class="viewcode-back" href="../../../source/api/clew.html#scitex.clew.on_session_start">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">on_session_start</span><span class="p">(</span>
+    <span class="n">session_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">script_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">parent_session</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">metadata</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">dict</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Hook called when a session starts.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    session_id : str</span>
+<span class="sd">        Unique session identifier</span>
+<span class="sd">    script_path : str, optional</span>
+<span class="sd">        Path to the script being run</span>
+<span class="sd">    parent_session : str, optional</span>
+<span class="sd">        Parent session ID for chain tracking</span>
+<span class="sd">    verbose : bool, optional</span>
+<span class="sd">        Whether to log status messages</span>
+<span class="sd">    metadata : dict, optional</span>
+<span class="sd">        Additional metadata (e.g. notebook_path, cell_index)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">start_tracking</span><span class="p">(</span>
+            <span class="n">session_id</span><span class="o">=</span><span class="n">session_id</span><span class="p">,</span>
+            <span class="n">script_path</span><span class="o">=</span><span class="n">script_path</span><span class="p">,</span>
+            <span class="n">parent_session</span><span class="o">=</span><span class="n">parent_session</span><span class="p">,</span>
+            <span class="n">metadata</span><span class="o">=</span><span class="n">metadata</span><span class="p">,</span>
+        <span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Could not start verification tracking: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="on_session_close">
+<a class="viewcode-back" href="../../../source/api/clew.html#scitex.clew.on_session_close">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">on_session_close</span><span class="p">(</span>
+    <span class="n">status</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;success&quot;</span><span class="p">,</span>
+    <span class="n">exit_code</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
+    <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">register</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">bool</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Hook called when a session closes.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    status : str, optional</span>
+<span class="sd">        Final status (success, failed, error)</span>
+<span class="sd">    exit_code : int, optional</span>
+<span class="sd">        Exit code of the script</span>
+<span class="sd">    verbose : bool, optional</span>
+<span class="sd">        Whether to log status messages</span>
+<span class="sd">    register : bool, optional</span>
+<span class="sd">        If True, register session hashes with remote Clew Registry.</span>
+<span class="sd">        If None, checks SCITEX_AUTO_REGISTER environment variable.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">tracker</span> <span class="o">=</span> <span class="n">get_tracker</span><span class="p">()</span>
+        <span class="n">stop_tracking</span><span class="p">(</span><span class="n">status</span><span class="o">=</span><span class="n">status</span><span class="p">,</span> <span class="n">exit_code</span><span class="o">=</span><span class="n">exit_code</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">_should_auto_register</span><span class="p">(</span><span class="n">register</span><span class="p">)</span> <span class="ow">and</span> <span class="n">tracker</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">_auto_register_session</span><span class="p">(</span><span class="n">tracker</span><span class="o">.</span><span class="n">session_id</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Could not stop verification tracking: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+
+<span class="c1"># ── Registry helpers ──</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_should_auto_register</span><span class="p">(</span><span class="n">register</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">bool</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check whether auto-registration is enabled.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">register</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">register</span>
+
+    <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;SCITEX_AUTO_REGISTER&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="ow">in</span> <span class="p">(</span>
+        <span class="s2">&quot;1&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;true&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;yes&quot;</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_auto_register_session</span><span class="p">(</span><span class="n">session_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Register session hashes with remote Clew Registry (fire-and-forget).&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">.._registry</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_registry</span>
+
+        <span class="n">get_registry</span><span class="p">()</span><span class="o">.</span><span class="n">register_session</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="s2">&quot;clew: failed to auto-register session </span><span class="si">%s</span><span class="s2">: </span><span class="si">%s</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">session_id</span><span class="p">,</span> <span class="n">e</span><span class="p">)</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_clew/_register_intermediate.html b/src/scitex/_sphinx_html/_modules/scitex_clew/_register_intermediate.html
new file mode 100644
index 000000000..4a5ab25af
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_clew/_register_intermediate.html
@@ -0,0 +1,775 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#project-templates">Project Templates</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_clew.html">scitex_clew</a></li>
+      <li class="breadcrumb-item active">scitex_clew._register_intermediate</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
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+             
+  <h1>Source code for scitex_clew._register_intermediate</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;Register an in-session intermediate value as a Clew claim.</span>
+
+<span class="sd">Wrapper around `_claim.add_claim` for the agentic-reasoning use case</span>
+<span class="sd">(see `_skills/scitex-clew/20_agentic-reasoning.md`). Lets an AI agent or</span>
+<span class="sd">script register a computed intermediate value without needing to construct</span>
+<span class="sd">a manuscript file path or line number — uses the active session&#39;s log file</span>
+<span class="sd">as the synthetic source.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._claim</span><span class="w"> </span><span class="kn">import</span> <span class="n">Claim</span><span class="p">,</span> <span class="n">add_claim</span>
+
+
+<div class="viewcode-block" id="register_intermediate">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.register_intermediate">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">register_intermediate</span><span class="p">(</span>
+    <span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">value</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span>
+    <span class="n">supports</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">session_id</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">claim_type</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;value&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Claim</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Register a computed intermediate as a Clew claim.</span>
+
+<span class="sd">    Use this from inside a `@stx.session` script (or from an agent loop) to</span>
+<span class="sd">    record any non-trivial intermediate value with explicit upstream support.</span>
+<span class="sd">    The claim becomes part of the DAG and can be queried via `clew.chain`,</span>
+<span class="sd">    `clew.dag`, or the MCP `clew_chain` / `clew_dag` tools.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    name</span>
+<span class="sd">        Descriptive identifier (e.g. `&quot;acute_n_sig_pathways&quot;`). Avoid generic</span>
+<span class="sd">        names like `&quot;result_3&quot;` — the id is the only handle a future inspector</span>
+<span class="sd">        has on the value.</span>
+<span class="sd">    value</span>
+<span class="sd">        The computed result. Coerced to string for storage; the hash chain</span>
+<span class="sd">        sees `repr(value)` so types matter.</span>
+<span class="sd">    supports</span>
+<span class="sd">        List of upstream claim ids or session ids that this value depends on.</span>
+<span class="sd">        Stored as JSON in the claim&#39;s value field for retrieval. None means</span>
+<span class="sd">        no explicit upstream (use sparingly).</span>
+<span class="sd">    session_id</span>
+<span class="sd">        The session this value belongs to. If None, read from the</span>
+<span class="sd">        `SCITEX_SESSION_ID` env var that `@stx.session` sets at start.</span>
+<span class="sd">    claim_type</span>
+<span class="sd">        One of `statistic`, `figure`, `table`, `text`, `value`. Defaults to</span>
+<span class="sd">        `value` since intermediates are usually scalar / categorical results.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Claim</span>
+<span class="sd">        The registered claim object.</span>
+
+<span class="sd">    Raises</span>
+<span class="sd">    ------</span>
+<span class="sd">    ValueError</span>
+<span class="sd">        If no session_id can be determined (env var unset and not passed).</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    Inside a `@stx.session` script:</span>
+
+<span class="sd">    &gt;&gt;&gt; from scitex_clew import register_intermediate</span>
+<span class="sd">    &gt;&gt;&gt; n_sig = sum(1 for p in pathways if p.padj &lt; 0.05)</span>
+<span class="sd">    &gt;&gt;&gt; register_intermediate(</span>
+<span class="sd">    ...     name=&quot;chronic_r2_n_sig_pathways&quot;,</span>
+<span class="sd">    ...     value=n_sig,</span>
+<span class="sd">    ...     supports=[&quot;chronic_r2_min_pvals&quot;, &quot;reactome_pathways_v2024&quot;],</span>
+<span class="sd">    ... )</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">session_id</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">session_id</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;SCITEX_SESSION_ID&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">session_id</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="s2">&quot;register_intermediate: no session_id given and SCITEX_SESSION_ID &quot;</span>
+            <span class="s2">&quot;is not set in the environment. Either pass session_id explicitly &quot;</span>
+            <span class="s2">&quot;or run inside a @stx.session-decorated script.&quot;</span>
+        <span class="p">)</span>
+
+    <span class="n">payload</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span>
+        <span class="s2">&quot;value&quot;</span><span class="p">:</span> <span class="nb">repr</span><span class="p">(</span><span class="n">value</span><span class="p">),</span>
+        <span class="s2">&quot;supports&quot;</span><span class="p">:</span> <span class="nb">list</span><span class="p">(</span><span class="n">supports</span><span class="p">)</span> <span class="k">if</span> <span class="n">supports</span> <span class="k">else</span> <span class="p">[],</span>
+    <span class="p">}</span>
+
+    <span class="n">script_path</span> <span class="o">=</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">if</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span> <span class="k">else</span> <span class="s2">&quot;&lt;agent&gt;&quot;</span>
+    <span class="k">return</span> <span class="n">add_claim</span><span class="p">(</span>
+        <span class="n">file_path</span><span class="o">=</span><span class="n">script_path</span><span class="p">,</span>
+        <span class="n">claim_type</span><span class="o">=</span><span class="n">claim_type</span><span class="p">,</span>
+        <span class="n">line_number</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
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+
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
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+
+        </div>
+      </div>
+    </nav>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+
+      <div class="wy-nav-content">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_clew.html">scitex_clew</a></li>
+      <li class="breadcrumb-item active">scitex_clew._rerun</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_clew._rerun</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-02-01 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_rerun.py</span>
+<span class="sd">&quot;&quot;&quot;Rerun verification - re-execute scripts and compare outputs.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">dataclasses</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">shutil</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">DAGVerification</span><span class="p">,</span>
+    <span class="n">FileVerification</span><span class="p">,</span>
+    <span class="n">RunVerification</span><span class="p">,</span>
+    <span class="n">VerificationLevel</span><span class="p">,</span>
+    <span class="n">VerificationStatus</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._db</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_db</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">verify_by_rerun</span><span class="p">(</span>
+    <span class="n">target</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">],</span>
+    <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">300</span><span class="p">,</span>
+    <span class="n">cleanup</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">RunVerification</span> <span class="o">|</span> <span class="nb">list</span><span class="p">[</span><span class="n">RunVerification</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Verify session(s) by re-executing scripts and comparing outputs.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    target : str or list[str]</span>
+<span class="sd">        Session ID, script path, or artifact path.</span>
+<span class="sd">        - run_id: directly use this run</span>
+<span class="sd">        - script path: latest run that executed this script</span>
+<span class="sd">        - artifact path: latest run which produced this file</span>
+<span class="sd">    timeout : int, optional</span>
+<span class="sd">        Maximum execution time in seconds (default: 300)</span>
+<span class="sd">    cleanup : bool, optional</span>
+<span class="sd">        Whether to remove the new session&#39;s output directory after verification</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    RunVerification or list[RunVerification]</span>
+<span class="sd">        Single result if single target, list if multiple targets</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+        <span class="k">return</span> <span class="p">[</span><span class="n">_verify_single</span><span class="p">(</span><span class="n">t</span><span class="p">,</span> <span class="n">timeout</span><span class="p">,</span> <span class="n">cleanup</span><span class="p">)</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="n">target</span><span class="p">]</span>
+    <span class="k">return</span> <span class="n">_verify_single</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="n">timeout</span><span class="p">,</span> <span class="n">cleanup</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_verify_single</span><span class="p">(</span>
+    <span class="n">target</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">300</span><span class="p">,</span>
+    <span class="n">cleanup</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">RunVerification</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Verify a single target.&quot;&quot;&quot;</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+
+    <span class="c1"># Resolve target to session_id</span>
+    <span class="n">session_id</span> <span class="o">=</span> <span class="n">_resolve_to_session_id</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="n">target</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">session_id</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_unknown_result</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+
+    <span class="c1"># Get original run info</span>
+    <span class="n">run_info</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_run</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">run_info</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_unknown_result</span><span class="p">(</span><span class="n">session_id</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+
+    <span class="n">script_path</span> <span class="o">=</span> <span class="n">run_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;script_path&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">script_path</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">Path</span><span class="p">(</span><span class="n">script_path</span><span class="p">)</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="n">RunVerification</span><span class="p">(</span>
+            <span class="n">session_id</span><span class="o">=</span><span class="n">session_id</span><span class="p">,</span>
+            <span class="n">script_path</span><span class="o">=</span><span class="n">script_path</span><span class="p">,</span>
+            <span class="n">status</span><span class="o">=</span><span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISSING</span><span class="p">,</span>
+            <span class="n">files</span><span class="o">=</span><span class="p">[],</span>
+            <span class="n">combined_hash_expected</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+            <span class="n">combined_hash_current</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+            <span class="n">level</span><span class="o">=</span><span class="n">VerificationLevel</span><span class="o">.</span><span class="n">RERUN</span><span class="p">,</span>
+        <span class="p">)</span>
+
+    <span class="c1"># Get expected output hashes from original session</span>
+    <span class="n">original_hashes</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_file_hashes</span><span class="p">(</span><span class="n">session_id</span><span class="p">,</span> <span class="n">role</span><span class="o">=</span><span class="s2">&quot;output&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">original_hashes</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_unknown_result</span><span class="p">(</span><span class="n">session_id</span><span class="p">,</span> <span class="n">script_path</span><span class="p">)</span>
+
+    <span class="c1"># Re-execute the script (creates new session)</span>
+    <span class="n">exec_result</span> <span class="o">=</span> <span class="n">_execute_script</span><span class="p">(</span><span class="n">script_path</span><span class="p">,</span> <span class="n">timeout</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">exec_result</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">dataclasses</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">exec_result</span><span class="p">,</span> <span class="n">session_id</span><span class="o">=</span><span class="n">session_id</span><span class="p">)</span>
+
+    <span class="c1"># Find the new session (most recent from this script)</span>
+    <span class="n">new_session_id</span><span class="p">,</span> <span class="n">new_sdir_run</span> <span class="o">=</span> <span class="n">_find_new_session</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="n">script_path</span><span class="p">,</span> <span class="n">session_id</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">new_session_id</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_unknown_result</span><span class="p">(</span><span class="n">session_id</span><span class="p">,</span> <span class="n">script_path</span><span class="p">)</span>
+
+    <span class="c1"># Get new session&#39;s output hashes</span>
+    <span class="n">new_hashes</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_file_hashes</span><span class="p">(</span><span class="n">new_session_id</span><span class="p">,</span> <span class="n">role</span><span class="o">=</span><span class="s2">&quot;output&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Compare hashes by filename</span>
+    <span class="n">file_verifications</span> <span class="o">=</span> <span class="n">_compare_hashes</span><span class="p">(</span><span class="n">original_hashes</span><span class="p">,</span> <span class="n">new_hashes</span><span class="p">)</span>
+
+    <span class="c1"># Cleanup new session&#39;s output directory if requested</span>
+    <span class="k">if</span> <span class="n">cleanup</span> <span class="ow">and</span> <span class="n">new_sdir_run</span><span class="p">:</span>
+        <span class="n">_cleanup_session_dir</span><span class="p">(</span><span class="n">new_sdir_run</span><span class="p">)</span>
+
+    <span class="c1"># Determine overall status</span>
+    <span class="n">status</span> <span class="o">=</span> <span class="n">_determine_status</span><span class="p">(</span><span class="n">file_verifications</span><span class="p">)</span>
+
+    <span class="c1"># Record verification result in database for original session</span>
+    <span class="n">db</span><span class="o">.</span><span class="n">record_verification</span><span class="p">(</span>
+        <span class="n">session_id</span><span class="o">=</span><span class="n">session_id</span><span class="p">,</span>
+        <span class="n">level</span><span class="o">=</span><span class="n">VerificationLevel</span><span class="o">.</span><span class="n">RERUN</span><span class="o">.</span><span class="n">value</span><span class="p">,</span>
+        <span class="n">status</span><span class="o">=</span><span class="n">status</span><span class="o">.</span><span class="n">value</span><span class="p">,</span>
+    <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">RunVerification</span><span class="p">(</span>
+        <span class="n">session_id</span><span class="o">=</span><span class="n">session_id</span><span class="p">,</span>
+        <span class="n">script_path</span><span class="o">=</span><span class="n">script_path</span><span class="p">,</span>
+        <span class="n">status</span><span class="o">=</span><span class="n">status</span><span class="p">,</span>
+        <span class="n">files</span><span class="o">=</span><span class="n">file_verifications</span><span class="p">,</span>
+        <span class="n">combined_hash_expected</span><span class="o">=</span><span class="n">run_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;combined_hash&quot;</span><span class="p">),</span>
+        <span class="n">combined_hash_current</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+        <span class="n">level</span><span class="o">=</span><span class="n">VerificationLevel</span><span class="o">.</span><span class="n">RERUN</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_resolve_to_session_id</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="n">target</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resolve target to session_id.</span>
+
+<span class="sd">    Accepts:</span>
+<span class="sd">        - run_id: directly use this run</span>
+<span class="sd">        - script path: latest run that executed this script</span>
+<span class="sd">        - artifact path: latest run which produced this file</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Try as run_id</span>
+    <span class="k">if</span> <span class="n">db</span><span class="o">.</span><span class="n">get_run</span><span class="p">(</span><span class="n">target</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">target</span>
+
+    <span class="c1"># Always resolve to absolute path</span>
+    <span class="n">resolved</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">target</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+
+    <span class="c1"># Try as script path</span>
+    <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">db</span><span class="o">.</span><span class="n">list_runs</span><span class="p">(</span><span class="n">limit</span><span class="o">=</span><span class="mi">100</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">run</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;script_path&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="n">resolved</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]</span>
+
+    <span class="c1"># Try as artifact (output) path</span>
+    <span class="n">sessions</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">find_session_by_file</span><span class="p">(</span><span class="n">resolved</span><span class="p">,</span> <span class="n">role</span><span class="o">=</span><span class="s2">&quot;output&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">sessions</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">if</span> <span class="n">sessions</span> <span class="k">else</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_unknown_result</span><span class="p">(</span><span class="n">session_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">script_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">RunVerification</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Create an unknown verification result.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">RunVerification</span><span class="p">(</span>
+        <span class="n">session_id</span><span class="o">=</span><span class="n">session_id</span><span class="p">,</span>
+        <span class="n">script_path</span><span class="o">=</span><span class="n">script_path</span><span class="p">,</span>
+        <span class="n">status</span><span class="o">=</span><span class="n">VerificationStatus</span><span class="o">.</span><span class="n">UNKNOWN</span><span class="p">,</span>
+        <span class="n">files</span><span class="o">=</span><span class="p">[],</span>
+        <span class="n">combined_hash_expected</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+        <span class="n">combined_hash_current</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+        <span class="n">level</span><span class="o">=</span><span class="n">VerificationLevel</span><span class="o">.</span><span class="n">RERUN</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_execute_script</span><span class="p">(</span><span class="n">script_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">RunVerification</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Execute script and return error result if failed, None if success.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;python&quot;</span><span class="p">,</span> <span class="n">script_path</span><span class="p">],</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="n">timeout</span><span class="p">,</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">Path</span><span class="p">(</span><span class="n">script_path</span><span class="p">)</span><span class="o">.</span><span class="n">parent</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">RunVerification</span><span class="p">(</span>
+                <span class="n">session_id</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span>
+                <span class="n">script_path</span><span class="o">=</span><span class="n">script_path</span><span class="p">,</span>
+                <span class="n">status</span><span class="o">=</span><span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISMATCH</span><span class="p">,</span>
+                <span class="n">files</span><span class="o">=</span><span class="p">[],</span>
+                <span class="n">combined_hash_expected</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+                <span class="n">combined_hash_current</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+                <span class="n">level</span><span class="o">=</span><span class="n">VerificationLevel</span><span class="o">.</span><span class="n">RERUN</span><span class="p">,</span>
+            <span class="p">)</span>
+        <span class="k">return</span> <span class="kc">None</span>  <span class="c1"># Success</span>
+    <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">TimeoutExpired</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_unknown_result</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">script_path</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_unknown_result</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">script_path</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_find_new_session</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="n">script_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">original_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Find the new session created by re-running the script.&quot;&quot;&quot;</span>
+    <span class="n">recent_runs</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">list_runs</span><span class="p">(</span><span class="n">limit</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">recent_runs</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">run</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;script_path&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="n">script_path</span> <span class="ow">and</span> <span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]</span> <span class="o">!=</span> <span class="n">original_id</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">],</span> <span class="n">run</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;sdir_run&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_compare_hashes</span><span class="p">(</span>
+    <span class="n">original_hashes</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">],</span> <span class="n">new_hashes</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Compare hashes by filename and return FileVerification list.&quot;&quot;&quot;</span>
+    <span class="n">original_by_name</span> <span class="o">=</span> <span class="p">{</span><span class="n">Path</span><span class="p">(</span><span class="n">p</span><span class="p">)</span><span class="o">.</span><span class="n">name</span><span class="p">:</span> <span class="n">h</span> <span class="k">for</span> <span class="n">p</span><span class="p">,</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">original_hashes</span><span class="o">.</span><span class="n">items</span><span class="p">()}</span>
+    <span class="n">new_by_name</span> <span class="o">=</span> <span class="p">{</span><span class="n">Path</span><span class="p">(</span><span class="n">p</span><span class="p">)</span><span class="o">.</span><span class="n">name</span><span class="p">:</span> <span class="n">h</span> <span class="k">for</span> <span class="n">p</span><span class="p">,</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">new_hashes</span><span class="o">.</span><span class="n">items</span><span class="p">()}</span>
+
+    <span class="n">verifications</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">filename</span><span class="p">,</span> <span class="n">expected_hash</span> <span class="ow">in</span> <span class="n">original_by_name</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="n">current_hash</span> <span class="o">=</span> <span class="n">new_by_name</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">current_hash</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">status</span> <span class="o">=</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISSING</span>
+        <span class="k">elif</span> <span class="n">current_hash</span> <span class="o">==</span> <span class="n">expected_hash</span><span class="p">:</span>
+            <span class="n">status</span> <span class="o">=</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">VERIFIED</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">status</span> <span class="o">=</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISMATCH</span>
+
+        <span class="n">verifications</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+            <span class="n">FileVerification</span><span class="p">(</span>
+                <span class="n">path</span><span class="o">=</span><span class="n">filename</span><span class="p">,</span>
+                <span class="n">role</span><span class="o">=</span><span class="s2">&quot;output&quot;</span><span class="p">,</span>
+                <span class="n">expected_hash</span><span class="o">=</span><span class="n">expected_hash</span><span class="p">,</span>
+                <span class="n">current_hash</span><span class="o">=</span><span class="n">current_hash</span><span class="p">,</span>
+                <span class="n">status</span><span class="o">=</span><span class="n">status</span><span class="p">,</span>
+            <span class="p">)</span>
+        <span class="p">)</span>
+    <span class="k">return</span> <span class="n">verifications</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_cleanup_session_dir</span><span class="p">(</span><span class="n">sdir_run</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Remove the session&#39;s output directory (best-effort).&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">sdir_run</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_determine_status</span><span class="p">(</span><span class="n">file_verifications</span><span class="p">:</span> <span class="nb">list</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">VerificationStatus</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Determine overall verification status from file verifications.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">is_verified</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">file_verifications</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">VERIFIED</span>
+    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">status</span> <span class="o">==</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISMATCH</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">file_verifications</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISMATCH</span>
+    <span class="k">return</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">UNKNOWN</span>
+
+
+<div class="viewcode-block" id="rerun_dag">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.rerun_dag">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">rerun_dag</span><span class="p">(</span>
+    <span class="n">targets</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">300</span><span class="p">,</span>
+    <span class="n">cleanup</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">DAGVerification</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Rerun-verify an entire DAG in topological order.</span>
+
+<span class="sd">    Each session is re-executed in a sandbox against its ORIGINAL stored</span>
+<span class="sd">    inputs (not freshly rerun outputs from upstream), then compared to</span>
+<span class="sd">    the original outputs.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    targets : list of str, optional</span>
+<span class="sd">        Target output files whose upstream DAG should be rerun.</span>
+<span class="sd">        If None, all runs in the database are used and their output</span>
+<span class="sd">        files become the targets.</span>
+<span class="sd">    timeout : int, optional</span>
+<span class="sd">        Maximum execution time per session in seconds (default: 300).</span>
+<span class="sd">    cleanup : bool, optional</span>
+<span class="sd">        Whether to remove sandbox output directories after each rerun.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    DAGVerification</span>
+<span class="sd">        Unified verification result for the entire DAG.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._chain</span><span class="w"> </span><span class="kn">import</span> <span class="n">DAGVerification</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._chain._dag</span><span class="w"> </span><span class="kn">import</span> <span class="n">_topological_sort</span>
+
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+
+    <span class="c1"># If no targets, collect all output files from all runs</span>
+    <span class="k">if</span> <span class="n">targets</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">targets</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">db</span><span class="o">.</span><span class="n">list_runs</span><span class="p">(</span><span class="n">limit</span><span class="o">=</span><span class="mi">10000</span><span class="p">):</span>
+            <span class="n">hashes</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_file_hashes</span><span class="p">(</span><span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">],</span> <span class="n">role</span><span class="o">=</span><span class="s2">&quot;output&quot;</span><span class="p">)</span>
+            <span class="n">targets</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">hashes</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+
+    <span class="c1"># Resolve targets to leaf session IDs</span>
+    <span class="n">resolved_targets</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">leaf_sessions</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">target</span> <span class="ow">in</span> <span class="n">targets</span><span class="p">:</span>
+        <span class="n">target_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">target</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+        <span class="n">resolved_targets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">target_str</span><span class="p">)</span>
+        <span class="n">sessions</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">find_session_by_file</span><span class="p">(</span><span class="n">target_str</span><span class="p">,</span> <span class="n">role</span><span class="o">=</span><span class="s2">&quot;output&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">sessions</span><span class="p">:</span>
+            <span class="n">leaf_sessions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sessions</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">leaf_sessions</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">DAGVerification</span><span class="p">(</span>
+            <span class="n">target_files</span><span class="o">=</span><span class="n">resolved_targets</span><span class="p">,</span>
+            <span class="n">runs</span><span class="o">=</span><span class="p">[],</span>
+            <span class="n">edges</span><span class="o">=</span><span class="p">[],</span>
+            <span class="n">status</span><span class="o">=</span><span class="n">VerificationStatus</span><span class="o">.</span><span class="n">UNKNOWN</span><span class="p">,</span>
+            <span class="n">topological_order</span><span class="o">=</span><span class="p">[],</span>
+        <span class="p">)</span>
+
+    <span class="c1"># BFS backward to collect full DAG</span>
+    <span class="n">adjacency</span><span class="p">,</span> <span class="n">_all_ids</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_dag</span><span class="p">(</span><span class="n">leaf_sessions</span><span class="p">)</span>
+
+    <span class="c1"># Topological sort (roots first)</span>
+    <span class="n">topo_order</span> <span class="o">=</span> <span class="n">_topological_sort</span><span class="p">(</span><span class="n">adjacency</span><span class="p">)</span>
+
+    <span class="c1"># Rerun each session in topological order</span>
+    <span class="n">verifications</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">sid</span> <span class="ow">in</span> <span class="n">topo_order</span><span class="p">:</span>
+        <span class="n">verifications</span><span class="p">[</span><span class="n">sid</span><span class="p">]</span> <span class="o">=</span> <span class="n">verify_by_rerun</span><span class="p">(</span><span class="n">sid</span><span class="p">,</span> <span class="n">timeout</span><span class="p">,</span> <span class="n">cleanup</span><span class="p">)</span>
+
+    <span class="c1"># Propagate failures forward through the DAG</span>
+    <span class="n">failed_sessions</span><span class="p">:</span> <span class="nb">set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">sid</span> <span class="ow">in</span> <span class="n">topo_order</span><span class="p">:</span>
+        <span class="n">parents</span> <span class="o">=</span> <span class="n">adjacency</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">sid</span><span class="p">,</span> <span class="p">[])</span>
+        <span class="n">has_failed_parent</span> <span class="o">=</span> <span class="nb">any</span><span class="p">(</span><span class="n">p</span> <span class="ow">in</span> <span class="n">failed_sessions</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">parents</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">has_failed_parent</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">verifications</span><span class="p">[</span><span class="n">sid</span><span class="p">]</span><span class="o">.</span><span class="n">is_verified</span><span class="p">:</span>
+            <span class="n">failed_sessions</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">sid</span><span class="p">)</span>
+
+    <span class="c1"># Build edges list</span>
+    <span class="n">edges</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">child</span><span class="p">,</span> <span class="n">parents</span> <span class="ow">in</span> <span class="n">adjacency</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">parents</span><span class="p">:</span>
+            <span class="n">edges</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">p</span><span class="p">,</span> <span class="n">child</span><span class="p">))</span>
+
+    <span class="c1"># Determine overall status</span>
+    <span class="n">run_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">verifications</span><span class="p">[</span><span class="n">sid</span><span class="p">]</span> <span class="k">for</span> <span class="n">sid</span> <span class="ow">in</span> <span class="n">topo_order</span><span class="p">]</span>
+
+    <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="n">sid</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">failed_sessions</span> <span class="k">for</span> <span class="n">sid</span> <span class="ow">in</span> <span class="n">topo_order</span><span class="p">):</span>
+        <span class="n">status</span> <span class="o">=</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">VERIFIED</span>
+    <span class="k">elif</span> <span class="nb">any</span><span class="p">(</span>
+        <span class="n">verifications</span><span class="p">[</span><span class="n">sid</span><span class="p">]</span><span class="o">.</span><span class="n">status</span> <span class="o">==</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISMATCH</span> <span class="k">for</span> <span class="n">sid</span> <span class="ow">in</span> <span class="n">topo_order</span>
+    <span class="p">):</span>
+        <span class="n">status</span> <span class="o">=</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISMATCH</span>
+    <span class="k">elif</span> <span class="nb">any</span><span class="p">(</span>
+        <span class="n">verifications</span><span class="p">[</span><span class="n">sid</span><span class="p">]</span><span class="o">.</span><span class="n">status</span> <span class="o">==</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISSING</span> <span class="k">for</span> <span class="n">sid</span> <span class="ow">in</span> <span class="n">topo_order</span>
+    <span class="p">):</span>
+        <span class="n">status</span> <span class="o">=</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">MISSING</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">status</span> <span class="o">=</span> <span class="n">VerificationStatus</span><span class="o">.</span><span class="n">UNKNOWN</span>
+
+    <span class="k">return</span> <span class="n">DAGVerification</span><span class="p">(</span>
+        <span class="n">target_files</span><span class="o">=</span><span class="n">resolved_targets</span><span class="p">,</span>
+        <span class="n">runs</span><span class="o">=</span><span class="n">run_list</span><span class="p">,</span>
+        <span class="n">edges</span><span class="o">=</span><span class="n">edges</span><span class="p">,</span>
+        <span class="n">status</span><span class="o">=</span><span class="n">status</span><span class="p">,</span>
+        <span class="n">topological_order</span><span class="o">=</span><span class="n">topo_order</span><span class="p">,</span>
+    <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="rerun_claims">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.rerun_claims">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">rerun_claims</span><span class="p">(</span>
+    <span class="n">file_path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">claim_type</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">300</span><span class="p">,</span>
+    <span class="n">cleanup</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">DAGVerification</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Rerun-verify all sessions that produced files referenced by claims.</span>
+
+<span class="sd">    Collects unique source files from matching claims, then delegates</span>
+<span class="sd">    to ``rerun_dag`` with those files as targets.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    file_path : str, optional</span>
+<span class="sd">        Filter claims by manuscript file path.</span>
+<span class="sd">    claim_type : str, optional</span>
+<span class="sd">        Filter claims by type (statistic, figure, table, text, value).</span>
+<span class="sd">    timeout : int, optional</span>
+<span class="sd">        Maximum execution time per session in seconds (default: 300).</span>
+<span class="sd">    cleanup : bool, optional</span>
+<span class="sd">        Whether to remove sandbox output directories after each rerun.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    DAGVerification</span>
+<span class="sd">        Unified verification result for the upstream DAG of all</span>
+<span class="sd">        source files referenced by the matching claims.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._claim</span><span class="w"> </span><span class="kn">import</span> <span class="n">list_claims</span>
+
+    <span class="n">claims</span> <span class="o">=</span> <span class="n">list_claims</span><span class="p">(</span><span class="n">file_path</span><span class="o">=</span><span class="n">file_path</span><span class="p">,</span> <span class="n">claim_type</span><span class="o">=</span><span class="n">claim_type</span><span class="p">)</span>
+
+    <span class="c1"># Collect unique source files from matching claims</span>
+    <span class="n">source_files</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">seen</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">claim</span> <span class="ow">in</span> <span class="n">claims</span><span class="p">:</span>
+        <span class="n">sf</span> <span class="o">=</span> <span class="n">claim</span><span class="o">.</span><span class="n">source_file</span>
+        <span class="k">if</span> <span class="n">sf</span> <span class="ow">and</span> <span class="n">sf</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">seen</span><span class="p">:</span>
+            <span class="n">seen</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">sf</span><span class="p">)</span>
+            <span class="n">source_files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sf</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">rerun_dag</span><span class="p">(</span><span class="n">source_files</span> <span class="ow">or</span> <span class="kc">None</span><span class="p">,</span> <span class="n">timeout</span><span class="p">,</span> <span class="n">cleanup</span><span class="p">)</span></div>
+
+
+
+<span class="c1"># Backward compatibility alias</span>
+<span class="n">verify_run_from_scratch</span> <span class="o">=</span> <span class="n">verify_by_rerun</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+   
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+</footer>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_clew.html">scitex_clew</a></li>
+      <li class="breadcrumb-item active">scitex_clew._stamp</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_clew._stamp</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-02-09 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_stamp.py</span>
+<span class="sd">&quot;&quot;&quot;External hash timestamping for temporal integrity.</span>
+
+<span class="sd">Provides independent temporal proof that a verification chain was consistent</span>
+<span class="sd">at a specific point in time. Only hashes are transmitted — never actual data.</span>
+
+<span class="sd">Backends (increasing trust level):</span>
+<span class="sd">  - file:    Local JSON file with timestamp (development/testing)</span>
+<span class="sd">  - rfc3161: RFC 3161 Timestamping Authority (production standard)</span>
+<span class="sd">  - zenodo:  Zenodo deposit with DOI (archival, citable)</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">hashlib</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sqlite3</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timezone</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._db</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_db</span>
+
+<span class="n">STAMP_BACKENDS</span> <span class="o">=</span> <span class="p">(</span><span class="s2">&quot;file&quot;</span><span class="p">,</span> <span class="s2">&quot;rfc3161&quot;</span><span class="p">,</span> <span class="s2">&quot;zenodo&quot;</span><span class="p">,</span> <span class="s2">&quot;scitex_cloud&quot;</span><span class="p">)</span>
+
+
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">Stamp</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;A temporal proof record.&quot;&quot;&quot;</span>
+
+    <span class="n">stamp_id</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">root_hash</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">timestamp</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">backend</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">service_url</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span>
+    <span class="n">response_token</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span>
+    <span class="n">run_count</span><span class="p">:</span> <span class="nb">int</span>
+    <span class="n">metadata</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">to_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;stamp_id&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">stamp_id</span><span class="p">,</span>
+            <span class="s2">&quot;root_hash&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">root_hash</span><span class="p">,</span>
+            <span class="s2">&quot;timestamp&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">timestamp</span><span class="p">,</span>
+            <span class="s2">&quot;backend&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">backend</span><span class="p">,</span>
+            <span class="s2">&quot;service_url&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">service_url</span><span class="p">,</span>
+            <span class="s2">&quot;response_token&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">response_token</span><span class="p">,</span>
+            <span class="s2">&quot;run_count&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">run_count</span><span class="p">,</span>
+            <span class="s2">&quot;metadata&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">metadata</span><span class="p">,</span>
+        <span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">migrate_add_stamps_table</span><span class="p">(</span><span class="n">db_path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Create stamps table if not present. Safe to call multiple times.&quot;&quot;&quot;</span>
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">            CREATE TABLE IF NOT EXISTS stamps (</span>
+<span class="sd">                id INTEGER PRIMARY KEY AUTOINCREMENT,</span>
+<span class="sd">                stamp_id TEXT UNIQUE NOT NULL,</span>
+<span class="sd">                root_hash TEXT NOT NULL,</span>
+<span class="sd">                timestamp TEXT NOT NULL,</span>
+<span class="sd">                backend TEXT NOT NULL,</span>
+<span class="sd">                service_url TEXT,</span>
+<span class="sd">                response_token TEXT,</span>
+<span class="sd">                run_count INTEGER,</span>
+<span class="sd">                metadata TEXT</span>
+<span class="sd">            )</span>
+<span class="sd">            &quot;&quot;&quot;</span>
+        <span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span><span class="s2">&quot;CREATE INDEX IF NOT EXISTS idx_stamps_hash ON stamps(root_hash)&quot;</span><span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">commit</span><span class="p">()</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">compute_root_hash</span><span class="p">(</span><span class="n">session_ids</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Compute a Merkle-like root hash over all (or selected) runs.</span>
+
+<span class="sd">    The root hash combines all run combined_hashes in deterministic order,</span>
+<span class="sd">    providing a single fingerprint for the entire verification state.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    session_ids : list of str, optional</span>
+<span class="sd">        Specific sessions to include. If None, includes all successful runs.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {root_hash, run_count, session_ids}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="n">conn</span><span class="o">.</span><span class="n">row_factory</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">Row</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">session_ids</span><span class="p">:</span>
+            <span class="n">placeholders</span> <span class="o">=</span> <span class="s2">&quot;,&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s2">&quot;?&quot;</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">session_ids</span><span class="p">))</span>
+            <span class="n">rows</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;SELECT session_id, combined_hash FROM runs &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;WHERE session_id IN (</span><span class="si">{</span><span class="n">placeholders</span><span class="si">}</span><span class="s2">) &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;ORDER BY session_id&quot;</span><span class="p">,</span>
+                <span class="n">session_ids</span><span class="p">,</span>
+            <span class="p">)</span><span class="o">.</span><span class="n">fetchall</span><span class="p">()</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">rows</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+                <span class="s2">&quot;SELECT session_id, combined_hash FROM runs &quot;</span>
+                <span class="s2">&quot;WHERE status = &#39;success&#39; AND combined_hash IS NOT NULL &quot;</span>
+                <span class="s2">&quot;ORDER BY session_id&quot;</span>
+            <span class="p">)</span><span class="o">.</span><span class="n">fetchall</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">rows</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;root_hash&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span> <span class="s2">&quot;run_count&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;session_ids&quot;</span><span class="p">:</span> <span class="p">[]}</span>
+
+        <span class="n">hasher</span> <span class="o">=</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">()</span>
+        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">rows</span><span class="p">:</span>
+            <span class="n">hasher</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span>
+            <span class="n">hasher</span><span class="o">.</span><span class="n">update</span><span class="p">((</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;combined_hash&quot;</span><span class="p">]</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span>
+            <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">])</span>
+
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;root_hash&quot;</span><span class="p">:</span> <span class="n">hasher</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">(),</span>
+            <span class="s2">&quot;run_count&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">ids</span><span class="p">),</span>
+            <span class="s2">&quot;session_ids&quot;</span><span class="p">:</span> <span class="n">ids</span><span class="p">,</span>
+        <span class="p">}</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+
+<div class="viewcode-block" id="stamp">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.stamp">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">stamp</span><span class="p">(</span>
+    <span class="n">backend</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;file&quot;</span><span class="p">,</span>
+    <span class="n">service_url</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">session_ids</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">output_dir</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Stamp</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Record root hash with external timestamp.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    backend : str</span>
+<span class="sd">        One of: file, rfc3161, zenodo.</span>
+<span class="sd">    service_url : str, optional</span>
+<span class="sd">        URL for RFC 3161 TSA or Zenodo API.</span>
+<span class="sd">    session_ids : list of str, optional</span>
+<span class="sd">        Specific sessions to stamp. If None, stamps all successful runs.</span>
+<span class="sd">    output_dir : str, optional</span>
+<span class="sd">        Directory for file-based stamps (default: &lt;db_dir&gt;/stamps, i.e. .scitex/clew/runtime/stamps/).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Stamp</span>
+<span class="sd">        The timestamp proof record.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">backend</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">STAMP_BACKENDS</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Invalid backend &#39;</span><span class="si">{</span><span class="n">backend</span><span class="si">}</span><span class="s2">&#39;. Must be one of: </span><span class="si">{</span><span class="n">STAMP_BACKENDS</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+
+    <span class="n">root</span> <span class="o">=</span> <span class="n">compute_root_hash</span><span class="p">(</span><span class="n">session_ids</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">root</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">]:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;No runs to stamp (no successful runs with combined hashes)&quot;</span><span class="p">)</span>
+
+    <span class="n">now</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">(</span><span class="n">timezone</span><span class="o">.</span><span class="n">utc</span><span class="p">)</span><span class="o">.</span><span class="n">isoformat</span><span class="p">()</span>
+    <span class="n">root_hash</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">]</span>
+    <span class="n">raw</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">root_hash</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">now</span><span class="si">}</span><span class="s2">&quot;</span>
+    <span class="n">stamp_id</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;stamp_</span><span class="si">{</span><span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">raw</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">12</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span>
+
+    <span class="k">if</span> <span class="n">backend</span> <span class="o">==</span> <span class="s2">&quot;file&quot;</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">_stamp_file</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">,</span> <span class="n">root</span><span class="p">,</span> <span class="n">now</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">backend</span> <span class="o">==</span> <span class="s2">&quot;rfc3161&quot;</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">_stamp_rfc3161</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">,</span> <span class="n">root</span><span class="p">,</span> <span class="n">now</span><span class="p">,</span> <span class="n">service_url</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">backend</span> <span class="o">==</span> <span class="s2">&quot;zenodo&quot;</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">_stamp_zenodo</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">,</span> <span class="n">root</span><span class="p">,</span> <span class="n">now</span><span class="p">,</span> <span class="n">service_url</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">backend</span> <span class="o">==</span> <span class="s2">&quot;scitex_cloud&quot;</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">_stamp_scitex_cloud</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">,</span> <span class="n">root</span><span class="p">,</span> <span class="n">now</span><span class="p">,</span> <span class="n">service_url</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Unsupported backend: </span><span class="si">{</span><span class="n">backend</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="n">stamp_obj</span> <span class="o">=</span> <span class="n">Stamp</span><span class="p">(</span>
+        <span class="n">stamp_id</span><span class="o">=</span><span class="n">stamp_id</span><span class="p">,</span>
+        <span class="n">root_hash</span><span class="o">=</span><span class="n">root</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">],</span>
+        <span class="n">timestamp</span><span class="o">=</span><span class="n">now</span><span class="p">,</span>
+        <span class="n">backend</span><span class="o">=</span><span class="n">backend</span><span class="p">,</span>
+        <span class="n">service_url</span><span class="o">=</span><span class="n">result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;service_url&quot;</span><span class="p">),</span>
+        <span class="n">response_token</span><span class="o">=</span><span class="n">result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;response_token&quot;</span><span class="p">),</span>
+        <span class="n">run_count</span><span class="o">=</span><span class="n">root</span><span class="p">[</span><span class="s2">&quot;run_count&quot;</span><span class="p">],</span>
+        <span class="n">metadata</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;session_ids&quot;</span><span class="p">:</span> <span class="n">root</span><span class="p">[</span><span class="s2">&quot;session_ids&quot;</span><span class="p">]},</span>
+    <span class="p">)</span>
+
+    <span class="c1"># Store in database</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">_ensure_stamps_table</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">            INSERT INTO stamps</span>
+<span class="sd">                (stamp_id, root_hash, timestamp, backend, service_url,</span>
+<span class="sd">                 response_token, run_count, metadata)</span>
+<span class="sd">            VALUES (?, ?, ?, ?, ?, ?, ?, ?)</span>
+<span class="sd">            &quot;&quot;&quot;</span><span class="p">,</span>
+            <span class="p">(</span>
+                <span class="n">stamp_obj</span><span class="o">.</span><span class="n">stamp_id</span><span class="p">,</span>
+                <span class="n">stamp_obj</span><span class="o">.</span><span class="n">root_hash</span><span class="p">,</span>
+                <span class="n">stamp_obj</span><span class="o">.</span><span class="n">timestamp</span><span class="p">,</span>
+                <span class="n">stamp_obj</span><span class="o">.</span><span class="n">backend</span><span class="p">,</span>
+                <span class="n">stamp_obj</span><span class="o">.</span><span class="n">service_url</span><span class="p">,</span>
+                <span class="n">stamp_obj</span><span class="o">.</span><span class="n">response_token</span><span class="p">,</span>
+                <span class="n">stamp_obj</span><span class="o">.</span><span class="n">run_count</span><span class="p">,</span>
+                <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="n">stamp_obj</span><span class="o">.</span><span class="n">metadata</span><span class="p">),</span>
+            <span class="p">),</span>
+        <span class="p">)</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">commit</span><span class="p">()</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+    <span class="k">return</span> <span class="n">stamp_obj</span></div>
+
+
+
+<div class="viewcode-block" id="check_stamp">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.check_stamp">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">check_stamp</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Verify a stamp against current verification state.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    stamp_id : str, optional</span>
+<span class="sd">        Specific stamp to check. If None, checks the latest stamp.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {stamp, current_root_hash, matches, details}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">_ensure_stamps_table</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
+
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="n">conn</span><span class="o">.</span><span class="n">row_factory</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">Row</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">stamp_id</span><span class="p">:</span>
+            <span class="n">row</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+                <span class="s2">&quot;SELECT * FROM stamps WHERE stamp_id = ?&quot;</span><span class="p">,</span> <span class="p">(</span><span class="n">stamp_id</span><span class="p">,)</span>
+            <span class="p">)</span><span class="o">.</span><span class="n">fetchone</span><span class="p">()</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">row</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+                <span class="s2">&quot;SELECT * FROM stamps ORDER BY id DESC LIMIT 1&quot;</span>
+            <span class="p">)</span><span class="o">.</span><span class="n">fetchone</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">row</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;not_found&quot;</span><span class="p">,</span> <span class="s2">&quot;message&quot;</span><span class="p">:</span> <span class="s2">&quot;No stamps found&quot;</span><span class="p">}</span>
+
+        <span class="n">stored_stamp</span> <span class="o">=</span> <span class="n">Stamp</span><span class="p">(</span>
+            <span class="n">stamp_id</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;stamp_id&quot;</span><span class="p">],</span>
+            <span class="n">root_hash</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">],</span>
+            <span class="n">timestamp</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;timestamp&quot;</span><span class="p">],</span>
+            <span class="n">backend</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;backend&quot;</span><span class="p">],</span>
+            <span class="n">service_url</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;service_url&quot;</span><span class="p">],</span>
+            <span class="n">response_token</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;response_token&quot;</span><span class="p">],</span>
+            <span class="n">run_count</span><span class="o">=</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;run_count&quot;</span><span class="p">],</span>
+            <span class="n">metadata</span><span class="o">=</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">row</span><span class="p">[</span><span class="s2">&quot;metadata&quot;</span><span class="p">])</span> <span class="k">if</span> <span class="n">row</span><span class="p">[</span><span class="s2">&quot;metadata&quot;</span><span class="p">]</span> <span class="k">else</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="p">)</span>
+
+        <span class="c1"># Recompute root hash from the same sessions</span>
+        <span class="n">session_ids</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="n">stored_stamp</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;session_ids&quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">stored_stamp</span><span class="o">.</span><span class="n">metadata</span> <span class="k">else</span> <span class="kc">None</span>
+        <span class="p">)</span>
+        <span class="n">current</span> <span class="o">=</span> <span class="n">compute_root_hash</span><span class="p">(</span><span class="n">session_ids</span><span class="p">)</span>
+
+        <span class="n">matches</span> <span class="o">=</span> <span class="n">current</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="n">stored_stamp</span><span class="o">.</span><span class="n">root_hash</span>
+        <span class="n">details</span> <span class="o">=</span> <span class="p">[]</span>
+
+        <span class="k">if</span> <span class="n">matches</span><span class="p">:</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Root hash matches stamp from </span><span class="si">{</span><span class="n">stored_stamp</span><span class="o">.</span><span class="n">timestamp</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Root hash CHANGED since stamp at </span><span class="si">{</span><span class="n">stored_stamp</span><span class="o">.</span><span class="n">timestamp</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  Stamped:  </span><span class="si">{</span><span class="n">stored_stamp</span><span class="o">.</span><span class="n">root_hash</span><span class="p">[:</span><span class="mi">32</span><span class="p">]</span><span class="si">}</span><span class="s2">...&quot;</span><span class="p">)</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  Current:  </span><span class="si">{</span><span class="n">current</span><span class="p">[</span><span class="s1">&#39;root_hash&#39;</span><span class="p">][:</span><span class="mi">32</span><span class="p">]</span><span class="si">}</span><span class="s2">...&quot;</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">current</span><span class="p">[</span><span class="s2">&quot;run_count&quot;</span><span class="p">]</span> <span class="o">!=</span> <span class="n">stored_stamp</span><span class="o">.</span><span class="n">run_count</span><span class="p">:</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;  Run count changed: </span><span class="si">{</span><span class="n">stored_stamp</span><span class="o">.</span><span class="n">run_count</span><span class="si">}</span><span class="s2"> → </span><span class="si">{</span><span class="n">current</span><span class="p">[</span><span class="s1">&#39;run_count&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;stamp&quot;</span><span class="p">:</span> <span class="n">stored_stamp</span><span class="o">.</span><span class="n">to_dict</span><span class="p">(),</span>
+            <span class="s2">&quot;current_root_hash&quot;</span><span class="p">:</span> <span class="n">current</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">],</span>
+            <span class="s2">&quot;matches&quot;</span><span class="p">:</span> <span class="n">matches</span><span class="p">,</span>
+            <span class="s2">&quot;details&quot;</span><span class="p">:</span> <span class="n">details</span><span class="p">,</span>
+        <span class="p">}</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="list_stamps">
+<a class="viewcode-back" href="../../source/api/clew.html#scitex.clew.list_stamps">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">list_stamps</span><span class="p">(</span><span class="n">limit</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">20</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Stamp</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;List all stamps.&quot;&quot;&quot;</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">_ensure_stamps_table</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
+
+    <span class="n">conn</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">))</span>
+    <span class="n">conn</span><span class="o">.</span><span class="n">row_factory</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">Row</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">rows</span> <span class="o">=</span> <span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
+            <span class="s2">&quot;SELECT * FROM stamps ORDER BY id DESC LIMIT ?&quot;</span><span class="p">,</span> <span class="p">(</span><span class="n">limit</span><span class="p">,)</span>
+        <span class="p">)</span><span class="o">.</span><span class="n">fetchall</span><span class="p">()</span>
+        <span class="k">return</span> <span class="p">[</span>
+            <span class="n">Stamp</span><span class="p">(</span>
+                <span class="n">stamp_id</span><span class="o">=</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;stamp_id&quot;</span><span class="p">],</span>
+                <span class="n">root_hash</span><span class="o">=</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">],</span>
+                <span class="n">timestamp</span><span class="o">=</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;timestamp&quot;</span><span class="p">],</span>
+                <span class="n">backend</span><span class="o">=</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;backend&quot;</span><span class="p">],</span>
+                <span class="n">service_url</span><span class="o">=</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;service_url&quot;</span><span class="p">],</span>
+                <span class="n">response_token</span><span class="o">=</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;response_token&quot;</span><span class="p">],</span>
+                <span class="n">run_count</span><span class="o">=</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;run_count&quot;</span><span class="p">],</span>
+                <span class="n">metadata</span><span class="o">=</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;metadata&quot;</span><span class="p">])</span> <span class="k">if</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;metadata&quot;</span><span class="p">]</span> <span class="k">else</span> <span class="kc">None</span><span class="p">,</span>
+            <span class="p">)</span>
+            <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">rows</span>
+        <span class="p">]</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="n">conn</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
+
+
+
+<span class="c1"># ── Backend implementations ──</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_stamp_file</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">,</span> <span class="n">root</span><span class="p">,</span> <span class="n">timestamp</span><span class="p">,</span> <span class="n">output_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;File-based stamping: write JSON proof to local directory.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">output_dir</span><span class="p">:</span>
+        <span class="n">stamp_dir</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">output_dir</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+        <span class="n">stamp_dir</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="o">.</span><span class="n">parent</span> <span class="o">/</span> <span class="s2">&quot;stamps&quot;</span>
+
+    <span class="n">stamp_dir</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+    <span class="n">stamp_path</span> <span class="o">=</span> <span class="n">stamp_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">stamp_id</span><span class="si">}</span><span class="s2">.json&quot;</span>
+
+    <span class="n">proof</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;stamp_id&quot;</span><span class="p">:</span> <span class="n">stamp_id</span><span class="p">,</span>
+        <span class="s2">&quot;root_hash&quot;</span><span class="p">:</span> <span class="n">root</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">],</span>
+        <span class="s2">&quot;timestamp&quot;</span><span class="p">:</span> <span class="n">timestamp</span><span class="p">,</span>
+        <span class="s2">&quot;run_count&quot;</span><span class="p">:</span> <span class="n">root</span><span class="p">[</span><span class="s2">&quot;run_count&quot;</span><span class="p">],</span>
+        <span class="s2">&quot;backend&quot;</span><span class="p">:</span> <span class="s2">&quot;file&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="n">stamp_path</span><span class="o">.</span><span class="n">write_text</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="n">proof</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
+    <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;service_url&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">stamp_path</span><span class="p">),</span> <span class="s2">&quot;response_token&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_stamp_rfc3161</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">,</span> <span class="n">root</span><span class="p">,</span> <span class="n">timestamp</span><span class="p">,</span> <span class="n">service_url</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;RFC 3161 Timestamping Authority.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">rfc3161ng</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;RFC 3161 stamping requires &#39;rfc3161ng&#39; package. &quot;</span>
+            <span class="s2">&quot;Install with: pip install rfc3161ng&quot;</span>
+        <span class="p">)</span>
+
+    <span class="n">url</span> <span class="o">=</span> <span class="n">service_url</span> <span class="ow">or</span> <span class="s2">&quot;http://zeitstempel.dfn.de&quot;</span>
+    <span class="n">certificate</span> <span class="o">=</span> <span class="n">rfc3161ng</span><span class="o">.</span><span class="n">RemoteTimestamper</span><span class="p">(</span><span class="n">url</span><span class="p">)</span>
+
+    <span class="n">hash_bytes</span> <span class="o">=</span> <span class="nb">bytes</span><span class="o">.</span><span class="n">fromhex</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">])</span>
+    <span class="n">tst</span> <span class="o">=</span> <span class="n">certificate</span><span class="o">.</span><span class="n">timestamp</span><span class="p">(</span><span class="n">data</span><span class="o">=</span><span class="n">hash_bytes</span><span class="p">)</span>
+
+    <span class="n">token_hex</span> <span class="o">=</span> <span class="n">tst</span><span class="o">.</span><span class="n">hex</span><span class="p">()</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tst</span><span class="p">,</span> <span class="nb">bytes</span><span class="p">)</span> <span class="k">else</span> <span class="nb">str</span><span class="p">(</span><span class="n">tst</span><span class="p">)</span>
+    <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;service_url&quot;</span><span class="p">:</span> <span class="n">url</span><span class="p">,</span> <span class="s2">&quot;response_token&quot;</span><span class="p">:</span> <span class="n">token_hex</span><span class="p">[:</span><span class="mi">256</span><span class="p">]}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_stamp_zenodo</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">,</span> <span class="n">root</span><span class="p">,</span> <span class="n">timestamp</span><span class="p">,</span> <span class="n">service_url</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Zenodo deposit: create a record with the root hash.&quot;&quot;&quot;</span>
+    <span class="k">raise</span> <span class="ne">NotImplementedError</span><span class="p">(</span>
+        <span class="s2">&quot;Zenodo stamping is planned for a future release. &quot;</span>
+        <span class="s2">&quot;Use &#39;file&#39; or &#39;rfc3161&#39; backend instead.&quot;</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_stamp_scitex_cloud</span><span class="p">(</span><span class="n">stamp_id</span><span class="p">,</span> <span class="n">root</span><span class="p">,</span> <span class="n">timestamp</span><span class="p">,</span> <span class="n">service_url</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;SciTeX Cloud registry: register root hash with server-side timestamp.&quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._registry</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_registry</span>
+
+    <span class="n">registry</span> <span class="o">=</span> <span class="n">get_registry</span><span class="p">(</span><span class="n">base_url</span><span class="o">=</span><span class="n">service_url</span><span class="p">)</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">registry</span><span class="o">.</span><span class="n">register</span><span class="p">(</span>
+        <span class="n">root</span><span class="p">[</span><span class="s2">&quot;root_hash&quot;</span><span class="p">],</span>
+        <span class="n">source_type</span><span class="o">=</span><span class="s2">&quot;stamp&quot;</span><span class="p">,</span>
+        <span class="n">metadata</span><span class="o">=</span><span class="p">{</span>
+            <span class="s2">&quot;stamp_id&quot;</span><span class="p">:</span> <span class="n">stamp_id</span><span class="p">,</span>
+            <span class="s2">&quot;run_count&quot;</span><span class="p">:</span> <span class="n">root</span><span class="p">[</span><span class="s2">&quot;run_count&quot;</span><span class="p">],</span>
+            <span class="s2">&quot;timestamp&quot;</span><span class="p">:</span> <span class="n">timestamp</span><span class="p">,</span>
+        <span class="p">},</span>
+    <span class="p">)</span>
+
+    <span class="n">url</span> <span class="o">=</span> <span class="n">service_url</span> <span class="ow">or</span> <span class="n">registry</span><span class="o">.</span><span class="n">base_url</span>
+    <span class="n">token</span> <span class="o">=</span> <span class="p">(</span>
+        <span class="n">result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;registered_at&quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;success&quot;</span><span class="p">)</span> <span class="k">else</span> <span class="kc">None</span>
+    <span class="p">)</span>
+    <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;service_url&quot;</span><span class="p">:</span> <span class="n">url</span><span class="p">,</span> <span class="s2">&quot;response_token&quot;</span><span class="p">:</span> <span class="n">token</span><span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_ensure_stamps_table</span><span class="p">(</span><span class="n">db</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Ensure the stamps table exists.&quot;&quot;&quot;</span>
+    <span class="n">migrate_add_stamps_table</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">db_path</span><span class="p">)</span>
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;STAMP_BACKENDS&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;Stamp&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;check_stamp&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;compute_root_hash&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;list_stamps&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;migrate_add_stamps_table&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;stamp&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_compat._compat</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_compat._compat</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># File: src/scitex_compat/_compat.py</span>
+
+<span class="sd">&quot;&quot;&quot;Core deprecation decorator and compat shims.</span>
+
+<span class="sd">Implementation of the public surface re-exported from</span>
+<span class="sd">``scitex_compat.__init__`` — kept in its own module so the test suite can</span>
+<span class="sd">mirror it as ``tests/scitex_compat/test__compat.py``.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">functools</span><span class="w"> </span><span class="kn">import</span> <span class="n">wraps</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Callable</span>
+
+
+<div class="viewcode-block" id="deprecated">
+<a class="viewcode-back" href="../../source/api/compat.html#scitex.compat.deprecated">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">deprecated</span><span class="p">(</span><span class="n">new_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">removal_version</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;2.0&quot;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Decorator to mark functions as deprecated.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">decorator</span><span class="p">(</span><span class="n">func</span><span class="p">:</span> <span class="n">Callable</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Callable</span><span class="p">:</span>
+        <span class="nd">@wraps</span><span class="p">(</span><span class="n">func</span><span class="p">)</span>
+        <span class="k">def</span><span class="w"> </span><span class="nf">wrapper</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">func</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2"> is deprecated. &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;Use </span><span class="si">{</span><span class="n">new_name</span><span class="si">}</span><span class="s2"> instead. &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;Will be removed in v</span><span class="si">{</span><span class="n">removal_version</span><span class="si">}</span><span class="s2">.&quot;</span><span class="p">,</span>
+                <span class="ne">DeprecationWarning</span><span class="p">,</span>
+                <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+            <span class="p">)</span>
+            <span class="k">return</span> <span class="n">func</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="n">wrapper</span>
+
+    <span class="k">return</span> <span class="n">decorator</span></div>
+
+
+
+<div class="viewcode-block" id="notify">
+<a class="viewcode-back" href="../../source/api/compat.html#scitex.compat.notify">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">notify</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Deprecated: Use scitex.notify.alert() instead.</span>
+
+<span class="sd">    In standalone mode, this only emits a deprecation warning.</span>
+<span class="sd">    The actual notification requires scitex.notify to be installed.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+        <span class="s2">&quot;scitex.compat.notify is deprecated. Use scitex.notify.alert instead.&quot;</span><span class="p">,</span>
+        <span class="ne">DeprecationWarning</span><span class="p">,</span>
+        <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="p">)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">scitex.notify</span><span class="w"> </span><span class="kn">import</span> <span class="n">alert</span>
+
+        <span class="k">return</span> <span class="n">alert</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+            <span class="s2">&quot;scitex.notify is not installed. Notification not sent.&quot;</span><span class="p">,</span>
+            <span class="ne">RuntimeWarning</span><span class="p">,</span>
+            <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">return</span> <span class="kc">None</span></div>
+
+
+
+<div class="viewcode-block" id="notify_async">
+<a class="viewcode-back" href="../../source/api/compat.html#scitex.compat.notify_async">[docs]</a>
+<span class="k">async</span> <span class="k">def</span><span class="w"> </span><span class="nf">notify_async</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Deprecated: Use scitex.notify.alert_async() instead.</span>
+
+<span class="sd">    In standalone mode, this only emits a deprecation warning.</span>
+<span class="sd">    The actual notification requires scitex.notify to be installed.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+        <span class="s2">&quot;scitex.compat.notify_async is deprecated. Use scitex.notify.alert_async instead.&quot;</span><span class="p">,</span>
+        <span class="ne">DeprecationWarning</span><span class="p">,</span>
+        <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="p">)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">scitex.notify</span><span class="w"> </span><span class="kn">import</span> <span class="n">alert_async</span>
+
+        <span class="k">return</span> <span class="k">await</span> <span class="n">alert_async</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+            <span class="s2">&quot;scitex.notify is not installed. Notification not sent.&quot;</span><span class="p">,</span>
+            <span class="ne">RuntimeWarning</span><span class="p">,</span>
+            <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">return</span> <span class="kc">None</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;deprecated&quot;</span><span class="p">,</span> <span class="s2">&quot;notify&quot;</span><span class="p">,</span> <span class="s2">&quot;notify_async&quot;</span><span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_config/_PriorityConfig.html b/src/scitex/_sphinx_html/_modules/scitex_config/_PriorityConfig.html
new file mode 100644
index 000000000..3b26c7df5
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_config/_PriorityConfig.html
@@ -0,0 +1,1061 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_config._PriorityConfig &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_config._PriorityConfig</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_config._PriorityConfig</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-12-09 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/config/PriorityConfig.py</span>
+
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Priority-based configuration resolver.</span>
+
+<span class="sd">Functionalities</span>
+<span class="sd">---------------</span>
+<span class="sd">- `PriorityConfig.resolve()` — precedence cascade `direct → config_dict → env → default`.</span>
+<span class="sd">- `load_dotenv()` — load `.env` file(s) into `os.environ` (cwd / $HOME / walk-up modes).</span>
+<span class="sd">- `get_scitex_dir()` — resolve `$SCITEX_DIR` (direct → env → `~/.scitex`).</span>
+
+<span class="sd">IO</span>
+<span class="sd">--</span>
+<span class="sd">- Reads: process env, `.env` files (cwd, `$HOME`, walk-up parents), config dicts.</span>
+<span class="sd">- Writes: `os.environ` (only keys not already set — process env wins).</span>
+
+<span class="sd">Dependencies</span>
+<span class="sd">------------</span>
+<span class="sd">- stdlib only (`os`, `pathlib`, `typing`).</span>
+
+<span class="sd">Based on priority-config by ywatanabe (https://github.com/ywatanabe1989/priority-config),</span>
+<span class="sd">incorporated into scitex for self-contained configuration management. Config-dict</span>
+<span class="sd">values (from YAML or passed dict) take priority over environment variables, following</span>
+<span class="sd">the Scholar module&#39;s CascadeConfig pattern.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Type</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._env_loader</span><span class="w"> </span><span class="kn">import</span> <span class="n">parse_src_file</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_parse_dotenv_file</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parse a single .env file and merge into os.environ.</span>
+
+<span class="sd">    Line/value parsing (``export`` prefix, quote stripping, ``$VAR`` expansion)</span>
+<span class="sd">    is delegated to :func:`scitex_config._env_loader.parse_src_file` so the</span>
+<span class="sd">    ``.env`` and ``.src`` surfaces share one canonical parser.</span>
+
+<span class="sd">    Existing env vars are preserved (not overridden) — process env wins</span>
+<span class="sd">    over .env file contents.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    bool</span>
+<span class="sd">        True if the file was successfully read and parsed, False on error.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="n">path</span><span class="o">.</span><span class="n">is_file</span><span class="p">()):</span>
+        <span class="k">return</span> <span class="kc">False</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">parsed</span> <span class="o">=</span> <span class="n">parse_src_file</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">parsed</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="c1"># Only set if not already in environment (env takes precedence)</span>
+            <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">:</span>
+                <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">value</span>
+        <span class="k">return</span> <span class="kc">True</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+
+<div class="viewcode-block" id="load_dotenv">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.load_dotenv">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">load_dotenv</span><span class="p">(</span>
+    <span class="n">dotenv_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">walk_up</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">stop_at</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Load environment variables from .env file(s).</span>
+
+<span class="sd">    Default behavior (``walk_up=False``, backward compatible):</span>
+<span class="sd">        Searches for .env file in the following order, loading the first match:</span>
+<span class="sd">        1. Explicit ``dotenv_path`` if provided</span>
+<span class="sd">        2. Current working directory (``cwd/.env``)</span>
+<span class="sd">        3. User home directory (``$HOME/.env``)</span>
+
+<span class="sd">    Parent-walking behavior (``walk_up=True``, opt-in):</span>
+<span class="sd">        Walks parent directories starting from ``cwd``, looking for ``.env``</span>
+<span class="sd">        at each level. Stops when reaching ``stop_at`` (or ``$HOME`` if not</span>
+<span class="sd">        given) or the filesystem root. **All** ``.env`` files found are loaded,</span>
+<span class="sd">        with the most-distant parent loaded first so that closer-to-cwd values</span>
+<span class="sd">        take precedence (closer .env wins). An existing process env var is</span>
+<span class="sd">        never overridden by any .env (process env &gt; closest .env &gt; ... &gt; root .env).</span>
+
+<span class="sd">        Note: ``walk_up=True`` is ignored if ``dotenv_path`` is explicitly given.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    dotenv_path : str, optional</span>
+<span class="sd">        Path to .env file. If None, searches default locations.</span>
+<span class="sd">    walk_up : bool, optional</span>
+<span class="sd">        If True (and ``dotenv_path`` not given), walk parent dirs from cwd.</span>
+<span class="sd">        Default False for backward compatibility — new callers should pass True.</span>
+<span class="sd">    stop_at : str or Path, optional</span>
+<span class="sd">        Directory at which to stop the upward walk (inclusive — its ``.env``</span>
+<span class="sd">        is considered). If None, stops at ``$HOME`` (or filesystem root if</span>
+<span class="sd">        ``$HOME`` is not a parent of cwd). Only used when ``walk_up=True``.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    bool</span>
+<span class="sd">        True if at least one .env file was found and loaded, False otherwise.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">dotenv_path</span><span class="p">:</span>
+        <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">dotenv_path</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="n">path</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+            <span class="k">return</span> <span class="n">_parse_dotenv_file</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">walk_up</span><span class="p">:</span>
+        <span class="c1"># Legacy behavior: try cwd then $HOME, first hit wins.</span>
+        <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="p">(</span><span class="n">Path</span><span class="o">.</span><span class="n">cwd</span><span class="p">()</span> <span class="o">/</span> <span class="s2">&quot;.env&quot;</span><span class="p">,</span> <span class="n">Path</span><span class="o">.</span><span class="n">home</span><span class="p">()</span> <span class="o">/</span> <span class="s2">&quot;.env&quot;</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="n">path</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+                <span class="k">return</span> <span class="n">_parse_dotenv_file</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+    <span class="c1"># walk_up=True: collect .env files from cwd up through parents.</span>
+    <span class="n">cwd</span> <span class="o">=</span> <span class="n">Path</span><span class="o">.</span><span class="n">cwd</span><span class="p">()</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+    <span class="n">home</span> <span class="o">=</span> <span class="n">Path</span><span class="o">.</span><span class="n">home</span><span class="p">()</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+    <span class="n">stop_dir</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">stop_at</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span> <span class="k">if</span> <span class="n">stop_at</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">home</span>
+
+    <span class="n">collected</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">current</span> <span class="o">=</span> <span class="n">cwd</span>
+    <span class="n">visited</span><span class="p">:</span> <span class="nb">set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+    <span class="k">while</span> <span class="kc">True</span><span class="p">:</span>
+        <span class="n">resolved</span> <span class="o">=</span> <span class="n">current</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">resolved</span> <span class="ow">in</span> <span class="n">visited</span><span class="p">:</span>
+            <span class="k">break</span>
+        <span class="n">visited</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">resolved</span><span class="p">)</span>
+
+        <span class="n">candidate</span> <span class="o">=</span> <span class="n">current</span> <span class="o">/</span> <span class="s2">&quot;.env&quot;</span>
+        <span class="k">if</span> <span class="n">candidate</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="n">candidate</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+            <span class="n">collected</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">candidate</span><span class="p">)</span>
+
+        <span class="c1"># Stop condition: reached the configured stop directory.</span>
+        <span class="k">if</span> <span class="n">resolved</span> <span class="o">==</span> <span class="n">stop_dir</span><span class="p">:</span>
+            <span class="k">break</span>
+
+        <span class="n">parent</span> <span class="o">=</span> <span class="n">current</span><span class="o">.</span><span class="n">parent</span>
+        <span class="k">if</span> <span class="n">parent</span> <span class="o">==</span> <span class="n">current</span><span class="p">:</span>
+            <span class="c1"># Filesystem root reached.</span>
+            <span class="k">break</span>
+        <span class="n">current</span> <span class="o">=</span> <span class="n">parent</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">collected</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+    <span class="c1"># `collected` is in cwd→root order (closest first). Load in that order:</span>
+    <span class="c1"># `_parse_dotenv_file` skips keys already in os.environ, so the closest</span>
+    <span class="c1"># .env wins for any shared key. Process env (set before this call) wins</span>
+    <span class="c1"># over all .env files.</span>
+    <span class="n">loaded_any</span> <span class="o">=</span> <span class="kc">False</span>
+    <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">collected</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">_parse_dotenv_file</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+            <span class="n">loaded_any</span> <span class="o">=</span> <span class="kc">True</span>
+    <span class="k">return</span> <span class="n">loaded_any</span></div>
+
+
+
+<div class="viewcode-block" id="get_scitex_dir">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.get_scitex_dir">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_scitex_dir</span><span class="p">(</span><span class="n">direct_val</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get SCITEX_DIR with priority: direct → env → default.</span>
+
+<span class="sd">    This is a convenience function for the most common use case.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    direct_val : str, optional</span>
+<span class="sd">        Direct value (highest precedence)</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Path</span>
+<span class="sd">        Resolved SCITEX_DIR path</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Try to load .env first (won&#39;t override existing env vars)</span>
+    <span class="n">load_dotenv</span><span class="p">()</span>
+
+    <span class="k">if</span> <span class="n">direct_val</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">direct_val</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span>
+
+    <span class="n">env_val</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="s2">&quot;SCITEX_DIR&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">env_val</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">env_val</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span>
+
+    <span class="k">return</span> <span class="n">Path</span><span class="o">.</span><span class="n">home</span><span class="p">()</span> <span class="o">/</span> <span class="s2">&quot;.scitex&quot;</span></div>
+
+
+
+<div class="viewcode-block" id="PriorityConfig">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.PriorityConfig">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">PriorityConfig</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Universal config resolver with precedence: direct → config_dict → env → default</span>
+
+<span class="sd">    Config dict (from YAML or passed dict) takes priority over env variables.</span>
+<span class="sd">    This follows the Scholar module&#39;s CascadeConfig pattern.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_config import PriorityConfig</span>
+<span class="sd">    &gt;&gt;&gt; config = PriorityConfig(config_dict={&quot;port&quot;: 3000}, env_prefix=&quot;SCITEX_&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; port = config.resolve(&quot;port&quot;, None, default=8000, type=int)</span>
+<span class="sd">    3000  # from config_dict (highest after direct)</span>
+<span class="sd">    &gt;&gt;&gt; # With env: SCITEX_PORT=5000 python script.py</span>
+<span class="sd">    &gt;&gt;&gt; port = config.resolve(&quot;port&quot;, None, default=8000, type=int)</span>
+<span class="sd">    3000  # config_dict takes precedence over env</span>
+<span class="sd">    &gt;&gt;&gt; port = config.resolve(&quot;port&quot;, 9000, default=8000, type=int)</span>
+<span class="sd">    9000  # direct value takes highest precedence</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="n">SENSITIVE_EXPRESSIONS</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="s2">&quot;API&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;PASSWORD&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;SECRET&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;TOKEN&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;KEY&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;PASS&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;AUTH&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;CREDENTIAL&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;PRIVATE&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;CERT&quot;</span><span class="p">,</span>
+    <span class="p">]</span>
+
+<div class="viewcode-block" id="PriorityConfig.__init__">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.PriorityConfig.__init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">config_dict</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">env_prefix</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">,</span>
+        <span class="n">auto_uppercase</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Initialize PriorityConfig.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        config_dict : dict, optional</span>
+<span class="sd">            Dictionary with configuration values</span>
+<span class="sd">        env_prefix : str</span>
+<span class="sd">            Prefix for environment variables (e.g., &quot;SCITEX_&quot;)</span>
+<span class="sd">        auto_uppercase : bool</span>
+<span class="sd">            Whether to uppercase keys for env lookup</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">config_dict</span> <span class="o">=</span> <span class="n">config_dict</span> <span class="ow">or</span> <span class="p">{}</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">env_prefix</span> <span class="o">=</span> <span class="n">env_prefix</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">auto_uppercase</span> <span class="o">=</span> <span class="n">auto_uppercase</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">resolution_log</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+        <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;PriorityConfig(prefix=&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">env_prefix</span><span class="si">}</span><span class="s2">&#39;, configs=</span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">config_dict</span><span class="p">)</span><span class="si">}</span><span class="s2">)&quot;</span>
+
+<div class="viewcode-block" id="PriorityConfig.get">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.PriorityConfig.get">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">get</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get value from config dict only.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">config_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="PriorityConfig.resolve">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.PriorityConfig.resolve">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">resolve</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">key</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">direct_val</span><span class="p">:</span> <span class="n">Any</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">default</span><span class="p">:</span> <span class="n">Any</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="nb">type</span><span class="p">:</span> <span class="n">Type</span> <span class="o">=</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">mask</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">bool</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get value with precedence hierarchy.</span>
+
+<span class="sd">        Precedence: direct → config_dict → env → default</span>
+
+<span class="sd">        This follows the Scholar module&#39;s CascadeConfig pattern where</span>
+<span class="sd">        config dict takes higher priority than environment variables.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        key : str</span>
+<span class="sd">            Configuration key to resolve</span>
+<span class="sd">        direct_val : Any, optional</span>
+<span class="sd">            Direct value (highest precedence)</span>
+<span class="sd">        default : Any, optional</span>
+<span class="sd">            Default value if not found elsewhere</span>
+<span class="sd">        type : Type</span>
+<span class="sd">            Type conversion (str, int, float, bool, list)</span>
+<span class="sd">        mask : bool, optional</span>
+<span class="sd">            Override automatic masking of sensitive values</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        Any</span>
+<span class="sd">            Resolved configuration value</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">source</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="n">final_value</span> <span class="o">=</span> <span class="kc">None</span>
+
+        <span class="c1"># Replace dots with underscores for env key (e.g., axes.width_mm -&gt; AXES_WIDTH_MM)</span>
+        <span class="n">normalized_key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span>
+        <span class="n">env_key</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">env_prefix</span><span class="si">}{</span><span class="n">normalized_key</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="w"> </span><span class="k">if</span><span class="w"> </span><span class="bp">self</span><span class="o">.</span><span class="n">auto_uppercase</span><span class="w"> </span><span class="k">else</span><span class="w"> </span><span class="n">normalized_key</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="n">env_val</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="n">env_key</span><span class="p">)</span>
+
+        <span class="c1"># Priority: direct → config_dict → env → default</span>
+        <span class="k">if</span> <span class="n">direct_val</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">source</span> <span class="o">=</span> <span class="s2">&quot;direct&quot;</span>
+            <span class="n">final_value</span> <span class="o">=</span> <span class="n">direct_val</span>
+        <span class="k">elif</span> <span class="n">key</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">config_dict</span><span class="p">:</span>
+            <span class="n">source</span> <span class="o">=</span> <span class="s2">&quot;config_dict&quot;</span>
+            <span class="n">final_value</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">config_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+        <span class="k">elif</span> <span class="n">env_val</span><span class="p">:</span>
+            <span class="n">source</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;env:</span><span class="si">{</span><span class="n">env_key</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">final_value</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_convert_type</span><span class="p">(</span><span class="n">env_val</span><span class="p">,</span> <span class="nb">type</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">source</span> <span class="o">=</span> <span class="s2">&quot;default&quot;</span>
+            <span class="n">final_value</span> <span class="o">=</span> <span class="n">default</span>
+
+        <span class="k">if</span> <span class="n">mask</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
+            <span class="n">should_mask</span> <span class="o">=</span> <span class="kc">False</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">should_mask</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_is_sensitive</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+
+        <span class="n">display_value</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mask_value</span><span class="p">(</span><span class="n">final_value</span><span class="p">)</span> <span class="k">if</span> <span class="n">should_mask</span> <span class="k">else</span> <span class="n">final_value</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">resolution_log</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+            <span class="p">{</span>
+                <span class="s2">&quot;key&quot;</span><span class="p">:</span> <span class="n">key</span><span class="p">,</span>
+                <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="n">source</span><span class="p">,</span>
+                <span class="s2">&quot;value&quot;</span><span class="p">:</span> <span class="n">display_value</span><span class="p">,</span>
+                <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="nb">type</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span>
+            <span class="p">}</span>
+        <span class="p">)</span>
+
+        <span class="k">return</span> <span class="n">final_value</span></div>
+
+
+<div class="viewcode-block" id="PriorityConfig.print_resolutions">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.PriorityConfig.print_resolutions">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">print_resolutions</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Print how each config was resolved.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">resolution_log</span><span class="p">:</span>
+            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;No configurations resolved yet&quot;</span><span class="p">)</span>
+            <span class="k">return</span>
+
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Configuration Resolution Log:&quot;</span><span class="p">)</span>
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;-&quot;</span> <span class="o">*</span> <span class="mi">50</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">resolution_log</span><span class="p">:</span>
+            <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">entry</span><span class="p">[</span><span class="s1">&#39;key&#39;</span><span class="p">]</span><span class="si">:</span><span class="s2">&lt;20</span><span class="si">}</span><span class="s2"> = </span><span class="si">{</span><span class="n">entry</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span><span class="si">:</span><span class="s2">&lt;20</span><span class="si">}</span><span class="s2"> (</span><span class="si">{</span><span class="n">entry</span><span class="p">[</span><span class="s1">&#39;source&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="PriorityConfig.clear_log">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.PriorityConfig.clear_log">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">clear_log</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Clear resolution log.&quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">resolution_log</span> <span class="o">=</span> <span class="p">[]</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_convert_type</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">value</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="nb">type</span><span class="p">:</span> <span class="n">Type</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Convert string value to specified type.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="nb">type</span> <span class="o">==</span> <span class="nb">int</span><span class="p">:</span>
+            <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="nb">type</span> <span class="o">==</span> <span class="nb">float</span><span class="p">:</span>
+            <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="nb">type</span> <span class="o">==</span> <span class="nb">bool</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">value</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;true&quot;</span><span class="p">,</span> <span class="s2">&quot;1&quot;</span><span class="p">,</span> <span class="s2">&quot;yes&quot;</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="nb">type</span> <span class="o">==</span> <span class="nb">list</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">value</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;,&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">value</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_is_sensitive</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Check if key contains sensitive expressions.&quot;&quot;&quot;</span>
+        <span class="n">key_upper</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span>
+        <span class="k">return</span> <span class="nb">any</span><span class="p">(</span><span class="n">expr</span> <span class="ow">in</span> <span class="n">key_upper</span> <span class="k">for</span> <span class="n">expr</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">SENSITIVE_EXPRESSIONS</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_mask_value</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">value</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Mask sensitive values for display.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">value</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">None</span>
+        <span class="n">value_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">value_str</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
+            <span class="k">return</span> <span class="s2">&quot;****&quot;</span>
+        <span class="k">return</span> <span class="n">value_str</span><span class="p">[:</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot;*&quot;</span> <span class="o">*</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">value_str</span><span class="p">)</span> <span class="o">-</span> <span class="mi">4</span><span class="p">)</span> <span class="o">+</span> <span class="n">value_str</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">:]</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_config/_ScitexConfig.html b/src/scitex/_sphinx_html/_modules/scitex_config/_ScitexConfig.html
new file mode 100644
index 000000000..2b4b5f83a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_config/_ScitexConfig.html
@@ -0,0 +1,1028 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_config._ScitexConfig</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_config._ScitexConfig</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-12-09 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/config/ScitexConfig.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">YAML-based configuration for SciTeX with environment variable substitution.</span>
+
+<span class="sd">Functionalities</span>
+<span class="sd">---------------</span>
+<span class="sd">- `load_yaml()` — parse YAML with `${VAR:-default}` env substitution.</span>
+<span class="sd">- `ScitexConfig` — YAML-backed config object exposing `.resolve(key, default=...)`.</span>
+<span class="sd">- `get_config()` — module-level cached accessor returning the default `ScitexConfig`.</span>
+
+<span class="sd">IO</span>
+<span class="sd">--</span>
+<span class="sd">- Reads: YAML files (default `src/scitex_config/default.yaml` or user-supplied path),</span>
+<span class="sd">  `os.environ` for `${VAR}` expansion.</span>
+<span class="sd">- Writes: none (read-only resolver).</span>
+
+<span class="sd">Dependencies</span>
+<span class="sd">------------</span>
+<span class="sd">- stdlib (`os`, `re`, `pathlib`, `typing`).</span>
+<span class="sd">- Sibling module `._PriorityConfig` (`PriorityConfig`, `load_dotenv`).</span>
+<span class="sd">- External: `PyYAML`.</span>
+
+<span class="sd">Usage</span>
+<span class="sd">-----</span>
+<span class="sd">    from scitex_config import ScitexConfig</span>
+
+<span class="sd">    # Load default configuration</span>
+<span class="sd">    config = ScitexConfig()</span>
+
+<span class="sd">    # Load custom configuration</span>
+<span class="sd">    config = ScitexConfig(config_path=&quot;/path/to/config.yaml&quot;)</span>
+
+<span class="sd">    # Resolve values with precedence</span>
+<span class="sd">    log_level = config.resolve(&quot;logging.level&quot;, default=&quot;INFO&quot;)</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Type</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._PriorityConfig</span><span class="w"> </span><span class="kn">import</span> <span class="n">PriorityConfig</span><span class="p">,</span> <span class="n">load_dotenv</span>
+
+
+<div class="viewcode-block" id="load_yaml">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.load_yaml">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">load_yaml</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Load YAML file with environment variable substitution.</span>
+
+<span class="sd">    Supports ${VAR:-default} syntax for environment variable expansion.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : Path</span>
+<span class="sd">        Path to YAML file</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Parsed YAML with environment variables substituted</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">yaml</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;PyYAML required for YAML config. Install with: pip install pyyaml&quot;</span>
+        <span class="p">)</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+            <span class="n">content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
+
+        <span class="k">def</span><span class="w"> </span><span class="nf">env_replacer</span><span class="p">(</span><span class="n">match</span><span class="p">):</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Replace ${VAR:-default} with environment variable or default.&quot;&quot;&quot;</span>
+            <span class="n">env_expr</span> <span class="o">=</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+            <span class="k">if</span> <span class="s2">&quot;:-&quot;</span> <span class="ow">in</span> <span class="n">env_expr</span><span class="p">:</span>
+                <span class="n">var_name</span><span class="p">,</span> <span class="n">default_value</span> <span class="o">=</span> <span class="n">env_expr</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;:-&quot;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+                <span class="n">value</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="n">var_name</span><span class="p">,</span> <span class="n">default_value</span><span class="o">.</span><span class="n">strip</span><span class="p">(</span><span class="s1">&#39;&quot;&#39;</span><span class="p">))</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">value</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="n">env_expr</span><span class="p">)</span>
+
+            <span class="c1"># Handle special values</span>
+            <span class="k">if</span> <span class="n">value</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;true&quot;</span><span class="p">,</span> <span class="s2">&quot;false&quot;</span><span class="p">]:</span>
+                <span class="k">return</span> <span class="n">value</span>
+            <span class="k">elif</span> <span class="n">value</span> <span class="o">==</span> <span class="s2">&quot;null&quot;</span><span class="p">:</span>
+                <span class="k">return</span> <span class="s2">&quot;null&quot;</span>
+            <span class="k">elif</span> <span class="n">value</span> <span class="ow">and</span> <span class="ow">not</span> <span class="p">(</span><span class="n">value</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;&quot;&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="n">value</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;&quot;&#39;</span><span class="p">)):</span>
+                <span class="k">return</span> <span class="sa">f</span><span class="s1">&#39;&quot;</span><span class="si">{</span><span class="n">value</span><span class="si">}</span><span class="s1">&quot;&#39;</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="k">return</span> <span class="n">value</span> <span class="ow">or</span> <span class="s2">&quot;null&quot;</span>
+
+        <span class="n">content</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;\$\{([^}]+)\}&quot;</span><span class="p">,</span> <span class="n">env_replacer</span><span class="p">,</span> <span class="n">content</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">yaml</span><span class="o">.</span><span class="n">safe_load</span><span class="p">(</span><span class="n">content</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Failed to load YAML config from </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="ScitexConfig">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexConfig">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ScitexConfig</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;YAML-based configuration manager for SciTeX.</span>
+
+<span class="sd">    Loads configuration from YAML files with environment variable substitution.</span>
+<span class="sd">    Values can be resolved with priority: direct → config → env → default.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.config import ScitexConfig</span>
+<span class="sd">    &gt;&gt;&gt; config = ScitexConfig()</span>
+<span class="sd">    &gt;&gt;&gt; config.resolve(&quot;logging.level&quot;, default=&quot;INFO&quot;)</span>
+<span class="sd">    &#39;INFO&#39;</span>
+<span class="sd">    &gt;&gt;&gt; config.get(&quot;debug.enabled&quot;)</span>
+<span class="sd">    False</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="ScitexConfig.__init__">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexConfig.__init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">config_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">env_prefix</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;SCITEX_&quot;</span><span class="p">,</span>
+    <span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Initialize ScitexConfig.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        config_path : str or Path, optional</span>
+<span class="sd">            Path to custom YAML config file. If None, uses default.yaml.</span>
+<span class="sd">        env_prefix : str</span>
+<span class="sd">            Prefix for environment variables (default: &quot;SCITEX_&quot;)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Load .env file first</span>
+        <span class="n">load_dotenv</span><span class="p">()</span>
+
+        <span class="c1"># Load YAML configuration</span>
+        <span class="k">if</span> <span class="n">config_path</span> <span class="ow">and</span> <span class="n">Path</span><span class="p">(</span><span class="n">config_path</span><span class="p">)</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_config_data</span> <span class="o">=</span> <span class="n">load_yaml</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">config_path</span><span class="p">))</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_config_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">config_path</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">default_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span><span class="o">.</span><span class="n">parent</span> <span class="o">/</span> <span class="s2">&quot;default.yaml&quot;</span>
+            <span class="k">if</span> <span class="n">default_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_config_data</span> <span class="o">=</span> <span class="n">load_yaml</span><span class="p">(</span><span class="n">default_path</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_config_data</span> <span class="o">=</span> <span class="p">{}</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_config_path</span> <span class="o">=</span> <span class="n">default_path</span>
+
+        <span class="c1"># Flatten nested config for easy access</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_flat_config</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_flatten_dict</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_config_data</span><span class="p">)</span>
+
+        <span class="c1"># Initialize PriorityConfig for resolution</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_priority_config</span> <span class="o">=</span> <span class="n">PriorityConfig</span><span class="p">(</span>
+            <span class="n">config_dict</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_flat_config</span><span class="p">,</span>
+            <span class="n">env_prefix</span><span class="o">=</span><span class="n">env_prefix</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_flatten_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">d</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">parent_key</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">sep</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;.&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Flatten nested dictionary with dot notation keys.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        d : dict</span>
+<span class="sd">            Dictionary to flatten</span>
+<span class="sd">        parent_key : str</span>
+<span class="sd">            Parent key for recursion</span>
+<span class="sd">        sep : str</span>
+<span class="sd">            Separator for nested keys</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        dict</span>
+<span class="sd">            Flattened dictionary</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">items</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="n">new_key</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">parent_key</span><span class="si">}{</span><span class="n">sep</span><span class="si">}{</span><span class="n">k</span><span class="si">}</span><span class="s2">&quot;</span> <span class="k">if</span> <span class="n">parent_key</span> <span class="k">else</span> <span class="n">k</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+                <span class="n">items</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_flatten_dict</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">new_key</span><span class="p">,</span> <span class="n">sep</span><span class="p">)</span><span class="o">.</span><span class="n">items</span><span class="p">())</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">items</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">new_key</span><span class="p">,</span> <span class="n">v</span><span class="p">))</span>
+        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="n">items</span><span class="p">)</span>
+
+<div class="viewcode-block" id="ScitexConfig.get">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexConfig.get">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">get</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">default</span><span class="p">:</span> <span class="n">Any</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get value from config directly (no precedence resolution).</span>
+
+<span class="sd">        Supports dot notation for nested keys.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        key : str</span>
+<span class="sd">            Configuration key (e.g., &quot;logging.level&quot; or &quot;debug.enabled&quot;)</span>
+<span class="sd">        default : Any</span>
+<span class="sd">            Default value if key not found</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        Any</span>
+<span class="sd">            Configuration value</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_flat_config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="n">default</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="ScitexConfig.resolve">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexConfig.resolve">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">resolve</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">key</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">direct_val</span><span class="p">:</span> <span class="n">Any</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">default</span><span class="p">:</span> <span class="n">Any</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="nb">type</span><span class="p">:</span> <span class="n">Type</span> <span class="o">=</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Resolve value with precedence: direct → config → env → default.</span>
+
+<span class="sd">        This follows the Scholar module&#39;s CascadeConfig pattern where</span>
+<span class="sd">        YAML config takes higher priority than environment variables.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        key : str</span>
+<span class="sd">            Configuration key (e.g., &quot;logging.level&quot;)</span>
+<span class="sd">        direct_val : Any</span>
+<span class="sd">            Direct value (highest precedence)</span>
+<span class="sd">        default : Any</span>
+<span class="sd">            Default value (lowest precedence)</span>
+<span class="sd">        type : Type</span>
+<span class="sd">            Type conversion (str, int, float, bool, list)</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        Any</span>
+<span class="sd">            Resolved value</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Priority: direct → config → env → default</span>
+        <span class="c1"># (Same as Scholar&#39;s CascadeConfig pattern)</span>
+        <span class="k">if</span> <span class="n">direct_val</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">direct_val</span>
+
+        <span class="c1"># Config (YAML) takes priority over env</span>
+        <span class="n">config_val</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_flat_config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">config_val</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">config_val</span>
+
+        <span class="c1"># Then check environment variable</span>
+        <span class="n">normalized_key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span>
+        <span class="n">env_key</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;SCITEX_</span><span class="si">{</span><span class="n">normalized_key</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="n">env_val</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="n">env_key</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">env_val</span><span class="p">:</span>
+            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_convert_type</span><span class="p">(</span><span class="n">env_val</span><span class="p">,</span> <span class="nb">type</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="n">default</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_convert_type</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">value</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="nb">type</span><span class="p">:</span> <span class="n">Type</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Convert string value to specified type.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="nb">type</span> <span class="o">==</span> <span class="nb">int</span><span class="p">:</span>
+            <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="nb">type</span> <span class="o">==</span> <span class="nb">float</span><span class="p">:</span>
+            <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="nb">type</span> <span class="o">==</span> <span class="nb">bool</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">value</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;true&quot;</span><span class="p">,</span> <span class="s2">&quot;1&quot;</span><span class="p">,</span> <span class="s2">&quot;yes&quot;</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="nb">type</span> <span class="o">==</span> <span class="nb">list</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">value</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;,&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">value</span>
+
+<div class="viewcode-block" id="ScitexConfig.get_nested">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexConfig.get_nested">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">get_nested</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">keys</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">default</span><span class="p">:</span> <span class="n">Any</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get nested value from original config structure.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        *keys : str</span>
+<span class="sd">            Keys to traverse (e.g., &quot;browser&quot;, &quot;screenshots_dir&quot;)</span>
+<span class="sd">        default : Any</span>
+<span class="sd">            Default value if not found</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        Any</span>
+<span class="sd">            Nested value</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">current</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_config_data</span>
+        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keys</span><span class="p">:</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">current</span><span class="p">,</span> <span class="nb">dict</span><span class="p">)</span> <span class="ow">and</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">current</span><span class="p">:</span>
+                <span class="n">current</span> <span class="o">=</span> <span class="n">current</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="k">return</span> <span class="n">default</span>
+        <span class="k">return</span> <span class="n">current</span></div>
+
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">config_path</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get the path to the loaded config file.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_config_path</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">raw</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get raw configuration data (original nested structure).&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_config_data</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">flat</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get flattened configuration data.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_flat_config</span>
+
+<div class="viewcode-block" id="ScitexConfig.print">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexConfig.print">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">print</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Print configuration resolution log.&quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_priority_config</span><span class="o">.</span><span class="n">print_resolutions</span><span class="p">()</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+        <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;ScitexConfig(path=&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_config_path</span><span class="si">}</span><span class="s2">&#39;)&quot;</span></div>
+
+
+
+<span class="c1"># Module-level convenience functions</span>
+
+<span class="n">_default_config</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">ScitexConfig</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+
+<div class="viewcode-block" id="get_config">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.get_config">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_config</span><span class="p">(</span><span class="n">config_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">ScitexConfig</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get ScitexConfig instance.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    config_path : str or Path, optional</span>
+<span class="sd">        Path to custom config. If None, returns cached default instance.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    ScitexConfig</span>
+<span class="sd">        Configuration instance</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_default_config</span>
+
+    <span class="k">if</span> <span class="n">config_path</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">ScitexConfig</span><span class="p">(</span><span class="n">config_path</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">_default_config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">_default_config</span> <span class="o">=</span> <span class="n">ScitexConfig</span><span class="p">()</span>
+
+    <span class="k">return</span> <span class="n">_default_config</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+          SphinxRtdTheme.Navigation.enable(true);
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+</html>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_config/_env_loader.html b/src/scitex/_sphinx_html/_modules/scitex_config/_env_loader.html
new file mode 100644
index 000000000..2232feb63
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_config/_env_loader.html
@@ -0,0 +1,853 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_config._env_loader &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
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+</ul>
+</li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+</ul>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_config._env_loader</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+             
+  <h1>Source code for scitex_config._env_loader</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2026-05-30 (ywatanabe)&quot;</span>
+<span class="c1"># File: ./src/scitex_config/_env_loader.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Environment variable loader for bash-compatible ``.src``/``.env`` files.</span>
+
+<span class="sd">Functionalities</span>
+<span class="sd">---------------</span>
+<span class="sd">- ``parse_src_file()`` — parse a single bash-style file into a ``{name: value}`` dict.</span>
+<span class="sd">- ``load_env_from_path()`` — parse a file or every ``*.src`` in a directory.</span>
+<span class="sd">- ``load_scitex_env()`` — apply ``$SCITEX_ENV_SRC`` contents to ``os.environ``.</span>
+
+<span class="sd">These are the canonical bash-style line/value parsers for the package; the</span>
+<span class="sd">``.env`` loader in ``_PriorityConfig`` delegates its per-line parsing here so</span>
+<span class="sd">quoting and ``$VAR`` expansion behave identically across both surfaces.</span>
+
+<span class="sd">IO</span>
+<span class="sd">--</span>
+<span class="sd">- Reads: process env (for ``$VAR`` expansion), ``.src``/``.env`` files.</span>
+<span class="sd">- Writes: ``os.environ`` (``load_scitex_env`` only).</span>
+
+<span class="sd">Dependencies</span>
+<span class="sd">------------</span>
+<span class="sd">- stdlib only (``logging``, ``os``, ``re``, ``pathlib``, ``typing``).</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+<span class="c1"># Pattern to match: export VAR=value or VAR=value (with optional quotes)</span>
+<span class="n">_ENV_PATTERN</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(?:export\s+)?([A-Za-z_][A-Za-z0-9_]*)=(.*)$&quot;</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_parse_value</span><span class="p">(</span><span class="n">value</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parse a bash-style value, handling quotes and escapes.&quot;&quot;&quot;</span>
+    <span class="n">value</span> <span class="o">=</span> <span class="n">value</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+
+    <span class="c1"># Handle double-quoted strings</span>
+    <span class="k">if</span> <span class="n">value</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;&quot;&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="n">value</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;&quot;&#39;</span><span class="p">):</span>
+        <span class="n">value</span> <span class="o">=</span> <span class="n">value</span><span class="p">[</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+        <span class="c1"># Unescape common bash escapes</span>
+        <span class="n">value</span> <span class="o">=</span> <span class="n">value</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">&quot;&#39;</span><span class="p">,</span> <span class="s1">&#39;&quot;&#39;</span><span class="p">)</span>
+        <span class="n">value</span> <span class="o">=</span> <span class="n">value</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\\</span><span class="s2">$&quot;</span><span class="p">,</span> <span class="s2">&quot;$&quot;</span><span class="p">)</span>
+        <span class="n">value</span> <span class="o">=</span> <span class="n">value</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\\\\</span><span class="s2">&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="se">\\</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="c1"># Handle single-quoted strings (no escaping in bash single quotes)</span>
+    <span class="k">elif</span> <span class="n">value</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;&#39;&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="n">value</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;&#39;&quot;</span><span class="p">):</span>
+        <span class="n">value</span> <span class="o">=</span> <span class="n">value</span><span class="p">[</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+
+    <span class="c1"># Expand $VAR and ${VAR} references</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">expand_var</span><span class="p">(</span><span class="n">match</span><span class="p">):</span>
+        <span class="n">var_name</span> <span class="o">=</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> <span class="ow">or</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">var_name</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="n">value</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;\$\{([^}]+)\}|\$([A-Za-z_][A-Za-z0-9_]*)&quot;</span><span class="p">,</span> <span class="n">expand_var</span><span class="p">,</span> <span class="n">value</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">value</span>
+
+
+<div class="viewcode-block" id="parse_src_file">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.parse_src_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">parse_src_file</span><span class="p">(</span><span class="n">filepath</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Parse a bash-compatible ``.src``/``.env`` file and extract env variables.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    filepath : Path</span>
+<span class="sd">        Path to the file.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Dictionary of variable names to values.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">env_vars</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filepath</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">f</span><span class="p">:</span>
+                <span class="n">line</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+
+                <span class="c1"># Skip empty lines and comments</span>
+                <span class="k">if</span> <span class="ow">not</span> <span class="n">line</span> <span class="ow">or</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;#&quot;</span><span class="p">):</span>
+                    <span class="k">continue</span>
+
+                <span class="n">match</span> <span class="o">=</span> <span class="n">_ENV_PATTERN</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+                    <span class="n">name</span><span class="p">,</span> <span class="n">value</span> <span class="o">=</span> <span class="n">match</span><span class="o">.</span><span class="n">groups</span><span class="p">()</span>
+                    <span class="n">env_vars</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_parse_value</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Failed to parse </span><span class="si">{</span><span class="n">filepath</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">env_vars</span></div>
+
+
+
+<div class="viewcode-block" id="load_env_from_path">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.load_env_from_path">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">load_env_from_path</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Load environment variables from a file or directory.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str</span>
+<span class="sd">        Path to a ``.src`` file or directory containing ``*.src`` files.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        All loaded environment variables.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">loaded</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="n">path_obj</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path_obj</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;SCITEX_ENV_SRC path does not exist: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">loaded</span>
+
+    <span class="n">files_to_load</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">if</span> <span class="n">path_obj</span><span class="o">.</span><span class="n">is_dir</span><span class="p">():</span>
+        <span class="c1"># Load all .src files in directory</span>
+        <span class="n">files_to_load</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">path_obj</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s2">&quot;*.src&quot;</span><span class="p">))</span>
+    <span class="k">elif</span> <span class="n">path_obj</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+        <span class="n">files_to_load</span> <span class="o">=</span> <span class="p">[</span><span class="n">path_obj</span><span class="p">]</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;SCITEX_ENV_SRC is not a file or directory: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">loaded</span>
+
+    <span class="k">for</span> <span class="n">src_file</span> <span class="ow">in</span> <span class="n">files_to_load</span><span class="p">:</span>
+        <span class="n">env_vars</span> <span class="o">=</span> <span class="n">parse_src_file</span><span class="p">(</span><span class="n">src_file</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">env_vars</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Loaded </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">env_vars</span><span class="p">)</span><span class="si">}</span><span class="s2"> vars from </span><span class="si">{</span><span class="n">src_file</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">loaded</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">env_vars</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">loaded</span></div>
+
+
+
+<div class="viewcode-block" id="load_scitex_env">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.load_scitex_env">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">load_scitex_env</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Load environment variables from ``$SCITEX_ENV_SRC`` if set.</span>
+
+<span class="sd">    This function should be called early in the MCP server startup.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    int</span>
+<span class="sd">        Number of environment variables loaded.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">env_src</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;SCITEX_ENV_SRC&quot;</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">env_src</span><span class="p">:</span>
+        <span class="k">return</span> <span class="mi">0</span>
+
+    <span class="n">loaded</span> <span class="o">=</span> <span class="n">load_env_from_path</span><span class="p">(</span><span class="n">env_src</span><span class="p">)</span>
+
+    <span class="c1"># Apply to current process environment</span>
+    <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">loaded</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">value</span>
+
+    <span class="k">if</span> <span class="n">loaded</span><span class="p">:</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;SCITEX_ENV_SRC: Loaded </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">loaded</span><span class="p">)</span><span class="si">}</span><span class="s2"> environment variables&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="nb">len</span><span class="p">(</span><span class="n">loaded</span><span class="p">)</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_config/_paths.html b/src/scitex/_sphinx_html/_modules/scitex_config/_paths.html
new file mode 100644
index 000000000..0758e0500
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_config/_paths.html
@@ -0,0 +1,1033 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_config._paths &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_config._paths</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_config._paths</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-12-09 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/config/paths.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Centralized path management for SciTeX.</span>
+
+<span class="sd">Functionalities</span>
+<span class="sd">---------------</span>
+<span class="sd">- `ScitexPaths` — central path manager rooted at `$SCITEX_DIR`</span>
+<span class="sd">  (browser, cache, capture, logs, sessions, ...).</span>
+<span class="sd">- Property accessors return canonical defaults; `resolve(name, direct_val=...)`</span>
+<span class="sd">  supports the `direct → env → default` cascade per directory.</span>
+<span class="sd">- `get_paths()` — module-level cached accessor.</span>
+
+<span class="sd">IO</span>
+<span class="sd">--</span>
+<span class="sd">- Reads: `$SCITEX_DIR` env var, `.env` files (via `load_dotenv`).</span>
+<span class="sd">- Writes: creates child directories under `$SCITEX_DIR` on first access</span>
+<span class="sd">  (`mkdir(parents=True, exist_ok=True)`).</span>
+
+<span class="sd">Dependencies</span>
+<span class="sd">------------</span>
+<span class="sd">- stdlib (`os`, `pathlib`, `typing`).</span>
+<span class="sd">- Sibling module `._PriorityConfig` (`get_scitex_dir`, `load_dotenv`).</span>
+
+<span class="sd">Usage</span>
+<span class="sd">-----</span>
+<span class="sd">    from scitex_config import ScitexPaths</span>
+
+<span class="sd">    paths = ScitexPaths()</span>
+
+<span class="sd">    # Method 1: Direct property access (uses default)</span>
+<span class="sd">    print(paths.logs)           # ~/.scitex/logs</span>
+<span class="sd">    print(paths.cache)          # ~/.scitex/cache</span>
+
+<span class="sd">    # Method 2: resolve() with direct value override (recommended for modules)</span>
+<span class="sd">    cache_dir = paths.resolve(&quot;cache&quot;, direct_val=user_provided_path)</span>
+<span class="sd">    # If user_provided_path is None -&gt; uses default from SCITEX_DIR</span>
+
+<span class="sd">    # Thread-safe: pass explicit base_dir</span>
+<span class="sd">    paths = ScitexPaths(base_dir=&quot;/custom/path&quot;)</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._PriorityConfig</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_scitex_dir</span>
+
+
+<div class="viewcode-block" id="ScitexPaths">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexPaths">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ScitexPaths</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Centralized path manager for SciTeX directories.</span>
+
+<span class="sd">    All paths are derived from SCITEX_DIR (default: ~/.scitex).</span>
+<span class="sd">    Priority: direct_val → SCITEX_DIR env → .env file → default</span>
+
+<span class="sd">    Directory Structure:</span>
+<span class="sd">        $SCITEX_DIR/</span>
+<span class="sd">        ├── browser/              # Browser profiles and data</span>
+<span class="sd">        │   ├── screenshots/      # Browser debugging screenshots</span>
+<span class="sd">        │   ├── sessions/         # Shared browser sessions</span>
+<span class="sd">        │   └── persistent/       # Persistent browser profiles</span>
+<span class="sd">        ├── cache/                # General cache</span>
+<span class="sd">        │   └── functions/        # Function cache (joblib)</span>
+<span class="sd">        ├── capture/              # Screen captures</span>
+<span class="sd">        ├── impact_factor_cache/  # Impact factor data cache</span>
+<span class="sd">        ├── logs/                 # Log files</span>
+<span class="sd">        ├── openathens_cache/     # OpenAthens auth cache</span>
+<span class="sd">        ├── rng/                  # Random number generator state</span>
+<span class="sd">        ├── scholar/              # Scholar module data</span>
+<span class="sd">        │   ├── cache/            # Scholar-specific cache</span>
+<span class="sd">        │   └── library/          # PDF library</span>
+<span class="sd">        ├── screenshots/          # General screenshots</span>
+<span class="sd">        ├── test_monitor/         # Test monitoring screenshots</span>
+<span class="sd">        └── writer/               # Writer module data</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="ScitexPaths.__init__">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexPaths.__init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">base_dir</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Initialize ScitexPaths.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        base_dir : str, optional</span>
+<span class="sd">            Explicit base directory. If None, uses SCITEX_DIR env var</span>
+<span class="sd">            or falls back to ~/.scitex.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">=</span> <span class="n">get_scitex_dir</span><span class="p">(</span><span class="n">base_dir</span><span class="p">)</span></div>
+
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">base</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Base SciTeX directory ($SCITEX_DIR or ~/.scitex).&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span>
+
+    <span class="c1"># ========== Core directories ==========</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">logs</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Log files directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;logs&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">cache</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;General cache directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;cache&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">capture</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Screen capture directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;capture&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">screenshots</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;General screenshots directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;screenshots&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">rng</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Random number generator state directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;rng&quot;</span>
+
+    <span class="c1"># ========== Browser directories ==========</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">browser</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Browser module base directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;browser&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">browser_screenshots</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Browser debugging screenshots.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">browser</span> <span class="o">/</span> <span class="s2">&quot;screenshots&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">browser_sessions</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Shared browser sessions.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">browser</span> <span class="o">/</span> <span class="s2">&quot;sessions&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">browser_persistent</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Persistent browser profiles.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">browser</span> <span class="o">/</span> <span class="s2">&quot;persistent&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">test_monitor</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Test monitoring screenshots directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;test_monitor&quot;</span>
+
+    <span class="c1"># ========== Cache directories ==========</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">function_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Function cache (joblib memory).&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">cache</span> <span class="o">/</span> <span class="s2">&quot;functions&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">impact_factor_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Impact factor data cache.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;impact_factor_cache&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">openathens_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;OpenAthens authentication cache.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;openathens_cache&quot;</span>
+
+    <span class="c1"># ========== Scholar directories ==========</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">scholar</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Scholar module base directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;scholar&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">scholar_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Scholar-specific cache directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">scholar</span> <span class="o">/</span> <span class="s2">&quot;cache&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">scholar_library</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Scholar PDF library directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">scholar</span> <span class="o">/</span> <span class="s2">&quot;library&quot;</span>
+
+    <span class="c1"># ========== Writer directories ==========</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">writer</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Writer module directory.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span> <span class="o">/</span> <span class="s2">&quot;writer&quot;</span>
+
+    <span class="c1"># ========== Resolve method (recommended for modules) ==========</span>
+
+<div class="viewcode-block" id="ScitexPaths.resolve">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexPaths.resolve">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">resolve</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">path_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">direct_val</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Resolve a path with priority: direct_val → default from SCITEX_DIR.</span>
+
+<span class="sd">        This is the recommended method for modules that accept optional path</span>
+<span class="sd">        parameters. It follows the same pattern as PriorityConfig.resolve().</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        path_name : str</span>
+<span class="sd">            Name of the path property (e.g., &quot;cache&quot;, &quot;logs&quot;, &quot;scholar_library&quot;)</span>
+<span class="sd">        direct_val : str or Path, optional</span>
+<span class="sd">            Direct value (highest precedence). If None, uses default.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        Path</span>
+<span class="sd">            Resolved path</span>
+
+<span class="sd">        Examples</span>
+<span class="sd">        --------</span>
+<span class="sd">        &gt;&gt;&gt; paths = ScitexPaths()</span>
+<span class="sd">        &gt;&gt;&gt; # User didn&#39;t provide path -&gt; use default</span>
+<span class="sd">        &gt;&gt;&gt; cache_dir = paths.resolve(&quot;cache&quot;, None)</span>
+<span class="sd">        &gt;&gt;&gt; # User provided custom path -&gt; use it</span>
+<span class="sd">        &gt;&gt;&gt; cache_dir = paths.resolve(&quot;cache&quot;, &quot;/custom/cache&quot;)</span>
+
+<span class="sd">        Usage in modules:</span>
+<span class="sd">        &gt;&gt;&gt; class MyModule:</span>
+<span class="sd">        ...     def __init__(self, cache_dir=None):</span>
+<span class="sd">        ...         self.cache_dir = get_paths().resolve(&quot;cache&quot;, cache_dir)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">direct_val</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">direct_val</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span>
+
+        <span class="c1"># Get the default path from property</span>
+        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path_name</span><span class="p">):</span>
+            <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path_name</span><span class="p">)</span>
+
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Unknown path name: </span><span class="si">{</span><span class="n">path_name</span><span class="si">}</span><span class="s2">. Available: </span><span class="si">{</span><span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">list_all</span><span class="p">()</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span></div>
+
+
+    <span class="c1"># ========== Utility methods ==========</span>
+
+<div class="viewcode-block" id="ScitexPaths.ensure_dir">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexPaths.ensure_dir">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">ensure_dir</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Ensure directory exists, creating if necessary.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        path : Path</span>
+<span class="sd">            Directory path to ensure exists.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        Path</span>
+<span class="sd">            The same path, guaranteed to exist.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">path</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">path</span></div>
+
+
+<div class="viewcode-block" id="ScitexPaths.ensure_all">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexPaths.ensure_all">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">ensure_all</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Create all standard directories.&quot;&quot;&quot;</span>
+        <span class="n">dirs</span> <span class="o">=</span> <span class="p">[</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">logs</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">cache</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">function_cache</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">capture</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">screenshots</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">rng</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">browser</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">browser_screenshots</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">browser_sessions</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">browser_persistent</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">test_monitor</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">impact_factor_cache</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">openathens_cache</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">scholar</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">scholar_cache</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">scholar_library</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">writer</span><span class="p">,</span>
+        <span class="p">]</span>
+        <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">dirs</span><span class="p">:</span>
+            <span class="n">d</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="ScitexPaths.list_all">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.ScitexPaths.list_all">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">list_all</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;List all configured paths.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        dict</span>
+<span class="sd">            Dictionary of path names to Path objects.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;base&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="p">,</span>
+            <span class="s2">&quot;logs&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">logs</span><span class="p">,</span>
+            <span class="s2">&quot;cache&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">cache</span><span class="p">,</span>
+            <span class="s2">&quot;function_cache&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">function_cache</span><span class="p">,</span>
+            <span class="s2">&quot;capture&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">capture</span><span class="p">,</span>
+            <span class="s2">&quot;screenshots&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">screenshots</span><span class="p">,</span>
+            <span class="s2">&quot;rng&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">rng</span><span class="p">,</span>
+            <span class="s2">&quot;browser&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">browser</span><span class="p">,</span>
+            <span class="s2">&quot;browser_screenshots&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">browser_screenshots</span><span class="p">,</span>
+            <span class="s2">&quot;browser_sessions&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">browser_sessions</span><span class="p">,</span>
+            <span class="s2">&quot;browser_persistent&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">browser_persistent</span><span class="p">,</span>
+            <span class="s2">&quot;test_monitor&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">test_monitor</span><span class="p">,</span>
+            <span class="s2">&quot;impact_factor_cache&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">impact_factor_cache</span><span class="p">,</span>
+            <span class="s2">&quot;openathens_cache&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">openathens_cache</span><span class="p">,</span>
+            <span class="s2">&quot;scholar&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">scholar</span><span class="p">,</span>
+            <span class="s2">&quot;scholar_cache&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">scholar_cache</span><span class="p">,</span>
+            <span class="s2">&quot;scholar_library&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">scholar_library</span><span class="p">,</span>
+            <span class="s2">&quot;writer&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">writer</span><span class="p">,</span>
+        <span class="p">}</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+        <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;ScitexPaths(base=&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_base_dir</span><span class="si">}</span><span class="s2">&#39;)&quot;</span></div>
+
+
+
+<span class="c1"># Singleton instance for convenience (uses default SCITEX_DIR)</span>
+<span class="n">_default_paths</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">ScitexPaths</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+
+<div class="viewcode-block" id="get_paths">
+<a class="viewcode-back" href="../../source/api/config.html#scitex.config.get_paths">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_paths</span><span class="p">(</span><span class="n">base_dir</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">ScitexPaths</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get ScitexPaths instance.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    base_dir : str, optional</span>
+<span class="sd">        Explicit base directory. If None, returns cached default instance.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    ScitexPaths</span>
+<span class="sd">        Path manager instance.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_default_paths</span>
+
+    <span class="k">if</span> <span class="n">base_dir</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">ScitexPaths</span><span class="p">(</span><span class="n">base_dir</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">_default_paths</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">_default_paths</span> <span class="o">=</span> <span class="n">ScitexPaths</span><span class="p">()</span>
+
+    <span class="k">return</span> <span class="n">_default_paths</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_context._detect_environment</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_context._detect_environment</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-07-04 11:20:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: ./src/scitex/gen/_detect_environment.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Enhanced environment detection for SciTeX.</span>
+
+<span class="sd">Provides better discrimination between:</span>
+<span class="sd">- Python scripts</span>
+<span class="sd">- IPython console</span>
+<span class="sd">- Jupyter notebooks</span>
+<span class="sd">- Interactive Python</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Literal</span><span class="p">,</span> <span class="n">Tuple</span>
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;detect_environment&quot;</span><span class="p">,</span> <span class="s2">&quot;get_output_directory&quot;</span><span class="p">]</span>
+
+<span class="n">EnvironmentType</span> <span class="o">=</span> <span class="n">Literal</span><span class="p">[</span><span class="s2">&quot;script&quot;</span><span class="p">,</span> <span class="s2">&quot;jupyter&quot;</span><span class="p">,</span> <span class="s2">&quot;ipython&quot;</span><span class="p">,</span> <span class="s2">&quot;interactive&quot;</span><span class="p">,</span> <span class="s2">&quot;unknown&quot;</span><span class="p">]</span>
+
+
+<div class="viewcode-block" id="detect_environment">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.detect_environment">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">detect_environment</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">EnvironmentType</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Detect the current execution environment.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    EnvironmentType</span>
+<span class="sd">        One of: &#39;script&#39;, &#39;jupyter&#39;, &#39;ipython&#39;, &#39;interactive&#39;, &#39;unknown&#39;</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; env = detect_environment()</span>
+<span class="sd">    &gt;&gt;&gt; print(f&quot;Running in: {env}&quot;)</span>
+<span class="sd">    Running in: script</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Check for Jupyter notebook</span>
+    <span class="k">if</span> <span class="s2">&quot;ipykernel&quot;</span> <span class="ow">in</span> <span class="n">sys</span><span class="o">.</span><span class="n">modules</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">ip</span> <span class="o">=</span> <span class="n">get_ipython</span><span class="p">()</span>
+            <span class="k">if</span> <span class="n">ip</span> <span class="ow">and</span> <span class="nb">type</span><span class="p">(</span><span class="n">ip</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;ZMQInteractiveShell&quot;</span><span class="p">:</span>
+                <span class="k">return</span> <span class="s2">&quot;jupyter&quot;</span>
+        <span class="k">except</span> <span class="ne">NameError</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+    <span class="c1"># Check for IPython console</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">ip</span> <span class="o">=</span> <span class="n">get_ipython</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">ip</span> <span class="ow">and</span> <span class="nb">type</span><span class="p">(</span><span class="n">ip</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;TerminalInteractiveShell&quot;</span><span class="p">:</span>
+            <span class="k">return</span> <span class="s2">&quot;ipython&quot;</span>
+    <span class="k">except</span> <span class="ne">NameError</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="c1"># Check for regular Python script</span>
+    <span class="k">if</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span> <span class="ow">and</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">and</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.py&quot;</span><span class="p">):</span>
+        <span class="k">return</span> <span class="s2">&quot;script&quot;</span>
+
+    <span class="c1"># Check for interactive Python</span>
+    <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">sys</span><span class="p">,</span> <span class="s2">&quot;ps1&quot;</span><span class="p">):</span>
+        <span class="k">return</span> <span class="s2">&quot;interactive&quot;</span>
+
+    <span class="k">return</span> <span class="s2">&quot;unknown&quot;</span></div>
+
+
+
+<div class="viewcode-block" id="get_output_directory">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.get_output_directory">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_output_directory</span><span class="p">(</span>
+    <span class="n">specified_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">env_type</span><span class="p">:</span> <span class="n">EnvironmentType</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">bool</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get the appropriate output directory based on environment.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    specified_path : str</span>
+<span class="sd">        The path specified by the user</span>
+<span class="sd">    env_type : EnvironmentType, optional</span>
+<span class="sd">        Override environment detection</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    tuple[str, bool]</span>
+<span class="sd">        (output_directory, should_use_temp)</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; output_dir, use_temp = get_output_directory(&quot;data.csv&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; print(f&quot;Save to: {output_dir}, Temp: {use_temp}&quot;)</span>
+<span class="sd">    Save to: ./script_out/data.csv, Temp: False</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">inspect</span>
+
+    <span class="k">if</span> <span class="n">env_type</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">env_type</span> <span class="o">=</span> <span class="n">detect_environment</span><span class="p">()</span>
+
+    <span class="c1"># For absolute paths, use as-is</span>
+    <span class="k">if</span> <span class="n">specified_path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">specified_path</span><span class="p">,</span> <span class="kc">False</span>
+
+    <span class="c1"># Get base directory based on environment</span>
+    <span class="k">if</span> <span class="n">env_type</span> <span class="o">==</span> <span class="s2">&quot;script&quot;</span><span class="p">:</span>
+        <span class="c1"># Use script location</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">script_path</span> <span class="o">=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">stack</span><span class="p">()[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">filename</span>
+            <span class="k">if</span> <span class="n">script_path</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">script_path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;&lt;&quot;</span><span class="p">):</span>
+                <span class="n">script_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">script_path</span><span class="p">))</span>
+                <span class="n">script_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">script_path</span><span class="p">))[</span><span class="mi">0</span><span class="p">]</span>
+                <span class="n">base_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">script_dir</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">script_name</span><span class="si">}</span><span class="s2">_out&quot;</span><span class="p">)</span>
+                <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">base_dir</span><span class="p">,</span> <span class="n">specified_path</span><span class="p">),</span> <span class="kc">False</span>
+        <span class="k">except</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+    <span class="k">elif</span> <span class="n">env_type</span> <span class="o">==</span> <span class="s2">&quot;jupyter&quot;</span><span class="p">:</span>
+        <span class="c1"># For Jupyter, use current working directory with subdirectory</span>
+        <span class="c1"># This keeps outputs near the notebook</span>
+        <span class="n">base_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">(),</span> <span class="s2">&quot;notebook_outputs&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">base_dir</span><span class="p">,</span> <span class="n">specified_path</span><span class="p">),</span> <span class="kc">False</span>
+
+    <span class="k">elif</span> <span class="n">env_type</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;ipython&quot;</span><span class="p">,</span> <span class="s2">&quot;interactive&quot;</span><span class="p">]:</span>
+        <span class="c1"># Use temp directory for console sessions</span>
+        <span class="n">user</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="s2">&quot;USER&quot;</span><span class="p">,</span> <span class="s2">&quot;unknown&quot;</span><span class="p">)</span>
+        <span class="n">base_dir</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;/tmp/</span><span class="si">{</span><span class="n">user</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">env_type</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">base_dir</span><span class="p">,</span> <span class="n">specified_path</span><span class="p">),</span> <span class="kc">True</span>
+
+    <span class="c1"># Fallback: use current directory</span>
+    <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s2">&quot;./output&quot;</span><span class="p">,</span> <span class="n">specified_path</span><span class="p">),</span> <span class="kc">False</span></div>
+
+
+
+<div class="viewcode-block" id="is_notebook">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.is_notebook">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">is_notebook</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if running in Jupyter notebook.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">detect_environment</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;jupyter&quot;</span></div>
+
+
+
+<div class="viewcode-block" id="is_ipython">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.is_ipython">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">is_ipython</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if running in IPython (console or notebook).&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">detect_environment</span><span class="p">()</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;jupyter&quot;</span><span class="p">,</span> <span class="s2">&quot;ipython&quot;</span><span class="p">]</span></div>
+
+
+
+<div class="viewcode-block" id="is_script">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.is_script">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">is_script</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if running as a script.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">detect_environment</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;script&quot;</span></div>
+
+
+
+<span class="c1"># Backward compatibility</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">is_ipython_legacy</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Legacy IPython detection for compatibility.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">__IPYTHON__</span>
+        <span class="k">return</span> <span class="kc">True</span>
+    <span class="k">except</span> <span class="ne">NameError</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_context/_get_notebook_path.html b/src/scitex/_sphinx_html/_modules/scitex_context/_get_notebook_path.html
new file mode 100644
index 000000000..1da6d7b5f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_context/_get_notebook_path.html
@@ -0,0 +1,959 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_context._get_notebook_path &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
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+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_context._get_notebook_path</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_context._get_notebook_path</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-07-04 12:00:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: ./src/scitex/gen/_get_notebook_path.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Get the current Jupyter notebook path.</span>
+
+<span class="sd">This module provides functions to detect and retrieve the path</span>
+<span class="sd">of the currently running Jupyter notebook.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span>
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;get_notebook_path&quot;</span><span class="p">,</span> <span class="s2">&quot;get_notebook_name&quot;</span><span class="p">]</span>
+
+
+<div class="viewcode-block" id="get_notebook_path">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.get_notebook_path">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_notebook_path</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get the full path of the current Jupyter notebook.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Optional[str]</span>
+<span class="sd">        Full path to the notebook file, or None if not in a notebook</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; path = get_notebook_path()</span>
+<span class="sd">    &gt;&gt;&gt; if path:</span>
+<span class="sd">    ...     print(f&quot;Running in notebook: {path}&quot;)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="c1"># Try to get from IPython</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">IPython</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_ipython</span>
+
+        <span class="n">ip</span> <span class="o">=</span> <span class="n">get_ipython</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">ip</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">None</span>
+
+        <span class="c1"># Check if we&#39;re in a notebook</span>
+        <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">ip</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span> <span class="o">!=</span> <span class="s2">&quot;ZMQInteractiveShell&quot;</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">None</span>
+
+        <span class="c1"># Try multiple methods to get the notebook path</span>
+
+        <span class="c1"># Method 1: From IPython&#39;s config</span>
+        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">ip</span><span class="p">,</span> <span class="s2">&quot;config&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">ip</span><span class="o">.</span><span class="n">config</span><span class="p">,</span> <span class="s2">&quot;IPKernelApp&quot;</span><span class="p">):</span>
+            <span class="n">connection_file</span> <span class="o">=</span> <span class="n">ip</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">IPKernelApp</span><span class="o">.</span><span class="n">connection_file</span>
+            <span class="k">if</span> <span class="n">connection_file</span><span class="p">:</span>
+                <span class="c1"># Extract kernel ID from connection file</span>
+                <span class="n">kernel_id</span> <span class="o">=</span> <span class="p">(</span>
+                    <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">connection_file</span><span class="p">)</span>
+                    <span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
+                    <span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;.json&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+                <span class="p">)</span>
+
+                <span class="c1"># Try to get notebook path from Jupyter server</span>
+                <span class="n">notebook_path</span> <span class="o">=</span> <span class="n">_get_notebook_from_server</span><span class="p">(</span><span class="n">kernel_id</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">notebook_path</span><span class="p">:</span>
+                    <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">notebook_path</span><span class="p">)</span>
+
+        <span class="c1"># Method 2: From environment variable (JupyterLab sets this)</span>
+        <span class="k">if</span> <span class="s2">&quot;JPY_SESSION_NAME&quot;</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">:</span>
+            <span class="n">session_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;JPY_SESSION_NAME&quot;</span><span class="p">]</span>
+            <span class="k">if</span> <span class="n">session_name</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.ipynb&quot;</span><span class="p">):</span>
+                <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">session_name</span><span class="p">)</span>
+
+        <span class="c1"># Method 3: From notebook&#39;s metadata</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="c1"># This works in some notebook environments</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">ipykernel</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">notebook</span>
+            <span class="kn">from</span><span class="w"> </span><span class="nn">notebook.notebookapp</span><span class="w"> </span><span class="kn">import</span> <span class="n">list_running_servers</span>
+
+            <span class="k">for</span> <span class="n">server</span> <span class="ow">in</span> <span class="n">list_running_servers</span><span class="p">():</span>
+                <span class="n">response</span> <span class="o">=</span> <span class="n">_get_notebook_list</span><span class="p">(</span><span class="n">server</span><span class="p">[</span><span class="s2">&quot;url&quot;</span><span class="p">],</span> <span class="n">server</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;token&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">))</span>
+                <span class="k">if</span> <span class="n">response</span><span class="p">:</span>
+                    <span class="k">for</span> <span class="n">session</span> <span class="ow">in</span> <span class="n">response</span><span class="p">:</span>
+                        <span class="k">if</span> <span class="n">session</span><span class="p">[</span><span class="s2">&quot;kernel&quot;</span><span class="p">][</span><span class="s2">&quot;id&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="n">kernel_id</span><span class="p">:</span>
+                            <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
+                                <span class="n">server</span><span class="p">[</span><span class="s2">&quot;notebook_dir&quot;</span><span class="p">],</span> <span class="n">session</span><span class="p">[</span><span class="s2">&quot;notebook&quot;</span><span class="p">][</span><span class="s2">&quot;path&quot;</span><span class="p">]</span>
+                            <span class="p">)</span>
+        <span class="k">except</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="k">return</span> <span class="kc">None</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_notebook_from_server</span><span class="p">(</span><span class="n">kernel_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Try to get notebook path from Jupyter server API.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">requests</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">notebook.notebookapp</span><span class="w"> </span><span class="kn">import</span> <span class="n">list_running_servers</span>
+
+        <span class="k">for</span> <span class="n">server</span> <span class="ow">in</span> <span class="n">list_running_servers</span><span class="p">():</span>
+            <span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">server</span><span class="p">[</span><span class="s1">&#39;url&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">api/sessions&quot;</span>
+            <span class="n">token</span> <span class="o">=</span> <span class="n">server</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;token&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+            <span class="k">if</span> <span class="n">token</span><span class="p">:</span>
+                <span class="n">headers</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;Authorization&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;token </span><span class="si">{</span><span class="n">token</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">}</span>
+                <span class="n">response</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">url</span><span class="p">,</span> <span class="n">headers</span><span class="o">=</span><span class="n">headers</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">response</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">url</span><span class="p">)</span>
+
+            <span class="k">if</span> <span class="n">response</span><span class="o">.</span><span class="n">status_code</span> <span class="o">==</span> <span class="mi">200</span><span class="p">:</span>
+                <span class="n">sessions</span> <span class="o">=</span> <span class="n">response</span><span class="o">.</span><span class="n">json</span><span class="p">()</span>
+                <span class="k">for</span> <span class="n">session</span> <span class="ow">in</span> <span class="n">sessions</span><span class="p">:</span>
+                    <span class="k">if</span> <span class="n">session</span><span class="p">[</span><span class="s2">&quot;kernel&quot;</span><span class="p">][</span><span class="s2">&quot;id&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="n">kernel_id</span><span class="p">:</span>
+                        <span class="k">return</span> <span class="n">session</span><span class="p">[</span><span class="s2">&quot;notebook&quot;</span><span class="p">][</span><span class="s2">&quot;path&quot;</span><span class="p">]</span>
+    <span class="k">except</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_notebook_list</span><span class="p">(</span><span class="n">server_url</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">token</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">list</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get list of running notebooks from server.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">requests</span>
+
+        <span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">server_url</span><span class="si">}</span><span class="s2">api/sessions&quot;</span>
+
+        <span class="k">if</span> <span class="n">token</span><span class="p">:</span>
+            <span class="n">headers</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;Authorization&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;token </span><span class="si">{</span><span class="n">token</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">}</span>
+            <span class="n">response</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">url</span><span class="p">,</span> <span class="n">headers</span><span class="o">=</span><span class="n">headers</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">response</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">url</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">response</span><span class="o">.</span><span class="n">status_code</span> <span class="o">==</span> <span class="mi">200</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">response</span><span class="o">.</span><span class="n">json</span><span class="p">()</span>
+    <span class="k">except</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<div class="viewcode-block" id="get_notebook_name">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.get_notebook_name">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_notebook_name</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get just the name of the current notebook (without path).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Optional[str]</span>
+<span class="sd">        Notebook filename, or None if not in a notebook</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; name = get_notebook_name()</span>
+<span class="sd">    &gt;&gt;&gt; if name:</span>
+<span class="sd">    ...     print(f&quot;Notebook: {name}&quot;)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">notebook_path</span> <span class="o">=</span> <span class="n">get_notebook_path</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">notebook_path</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">notebook_path</span><span class="p">)</span>
+    <span class="k">return</span> <span class="kc">None</span></div>
+
+
+
+<div class="viewcode-block" id="get_notebook_directory">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.get_notebook_directory">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_notebook_directory</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get the directory containing the current notebook.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Optional[str]</span>
+<span class="sd">        Directory path, or None if not in a notebook</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">notebook_path</span> <span class="o">=</span> <span class="n">get_notebook_path</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">notebook_path</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">notebook_path</span><span class="p">))</span>
+    <span class="k">return</span> <span class="kc">None</span></div>
+
+
+
+<span class="c1"># Simpler fallback method for when advanced detection fails</span>
+<div class="viewcode-block" id="get_notebook_info_simple">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.get_notebook_info_simple">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_notebook_info_simple</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">[</span><span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">],</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Simple method to get notebook info using current working directory.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    tuple[Optional[str], Optional[str]]</span>
+<span class="sd">        (notebook_name, notebook_directory)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="c1"># In Jupyter, __file__ is not defined but we can use inspect</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">inspect</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+
+        <span class="c1"># Get the call stack and look for notebook indicators</span>
+        <span class="k">for</span> <span class="n">frame_info</span> <span class="ow">in</span> <span class="n">inspect</span><span class="o">.</span><span class="n">stack</span><span class="p">():</span>
+            <span class="n">filename</span> <span class="o">=</span> <span class="n">frame_info</span><span class="o">.</span><span class="n">filename</span>
+            <span class="k">if</span> <span class="n">filename</span><span class="p">:</span>
+                <span class="c1"># Check for ipynb in the filename</span>
+                <span class="k">if</span> <span class="n">filename</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.ipynb&quot;</span><span class="p">):</span>
+                    <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">filename</span><span class="p">),</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span>
+                        <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+                    <span class="p">)</span>
+
+                <span class="c1"># Look for notebook execution patterns in the filename</span>
+                <span class="c1"># Jupyter often uses patterns like &lt;ipython-input-...&gt; or kernel UUIDs</span>
+                <span class="k">if</span> <span class="s2">&quot;&lt;ipython-input&quot;</span> <span class="ow">in</span> <span class="n">filename</span> <span class="ow">or</span> <span class="s2">&quot;ipykernel_&quot;</span> <span class="ow">in</span> <span class="n">filename</span><span class="p">:</span>
+                    <span class="c1"># We&#39;re definitely in a notebook, need to find which one</span>
+                    <span class="k">break</span>
+
+        <span class="c1"># If we can&#39;t find it in stack, check if we&#39;re in a notebook environment</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">IPython</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_ipython</span>
+
+        <span class="n">ip</span> <span class="o">=</span> <span class="n">get_ipython</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="n">ip</span> <span class="ow">and</span> <span class="nb">type</span><span class="p">(</span><span class="n">ip</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;ZMQInteractiveShell&quot;</span><span class="p">:</span>
+            <span class="c1"># We&#39;re in a notebook but can&#39;t determine the name from stack</span>
+            <span class="c1"># Try multiple strategies to find the notebook name</span>
+
+            <span class="c1"># Strategy 1: Check IPython&#39;s config for hints</span>
+            <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">ip</span><span class="p">,</span> <span class="s2">&quot;config&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">ip</span><span class="o">.</span><span class="n">config</span><span class="p">,</span> <span class="s2">&quot;IPKernelApp&quot;</span><span class="p">):</span>
+                <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">ip</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">IPKernelApp</span><span class="p">,</span> <span class="s2">&quot;connection_file&quot;</span><span class="p">):</span>
+                    <span class="n">conn_file</span> <span class="o">=</span> <span class="n">ip</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">IPKernelApp</span><span class="o">.</span><span class="n">connection_file</span>
+                    <span class="c1"># Sometimes the connection file path contains hints about the notebook</span>
+                    <span class="k">if</span> <span class="n">conn_file</span> <span class="ow">and</span> <span class="s2">&quot;.ipynb&quot;</span> <span class="ow">in</span> <span class="n">conn_file</span><span class="p">:</span>
+                        <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;([^/]+)\.ipynb&quot;</span><span class="p">,</span> <span class="n">conn_file</span><span class="p">)</span>
+                        <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+                            <span class="k">return</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">0</span><span class="p">),</span> <span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">()</span>
+
+            <span class="c1"># Strategy 2: Check environment variables</span>
+            <span class="k">for</span> <span class="n">env_var</span> <span class="ow">in</span> <span class="p">[</span>
+                <span class="s2">&quot;JUPYTER_NOTEBOOK_NAME&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;JPY_SESSION_NAME&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;NOTEBOOK_NAME&quot;</span><span class="p">,</span>
+            <span class="p">]:</span>
+                <span class="k">if</span> <span class="n">env_var</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">:</span>
+                    <span class="n">notebook_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="n">env_var</span><span class="p">]</span>
+                    <span class="k">if</span> <span class="n">notebook_name</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.ipynb&quot;</span><span class="p">):</span>
+                        <span class="k">return</span> <span class="n">notebook_name</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">()</span>
+
+            <span class="c1"># Strategy 3: Look for recently modified .ipynb files in current directory</span>
+            <span class="n">cwd</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">()</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="c1"># Get all .ipynb files with their modification times</span>
+                <span class="n">notebook_files</span> <span class="o">=</span> <span class="p">[]</span>
+                <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">listdir</span><span class="p">(</span><span class="n">cwd</span><span class="p">):</span>
+                    <span class="k">if</span> <span class="p">(</span>
+                        <span class="n">file</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.ipynb&quot;</span><span class="p">)</span>
+                        <span class="ow">and</span> <span class="ow">not</span> <span class="n">file</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)</span>
+                        <span class="ow">and</span> <span class="ow">not</span> <span class="n">file</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;_test_output.ipynb&quot;</span><span class="p">)</span>
+                    <span class="p">):</span>
+                        <span class="n">file_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cwd</span><span class="p">,</span> <span class="n">file</span><span class="p">)</span>
+                        <span class="n">mtime</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">getmtime</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span>
+                        <span class="n">notebook_files</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">file</span><span class="p">,</span> <span class="n">mtime</span><span class="p">))</span>
+
+                <span class="c1"># Sort by modification time (most recent first)</span>
+                <span class="n">notebook_files</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+                <span class="k">if</span> <span class="n">notebook_files</span><span class="p">:</span>
+                    <span class="c1"># Return the most recently modified notebook</span>
+                    <span class="c1"># This is a good heuristic as the currently running notebook</span>
+                    <span class="c1"># is likely to have been saved recently</span>
+                    <span class="k">return</span> <span class="n">notebook_files</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">cwd</span>
+            <span class="k">except</span><span class="p">:</span>
+                <span class="k">pass</span>
+
+            <span class="c1"># If no notebook found, return generic name</span>
+            <span class="k">return</span> <span class="s2">&quot;untitled.ipynb&quot;</span><span class="p">,</span> <span class="n">cwd</span>
+
+    <span class="k">except</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="k">return</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_context/_suppress_output.html b/src/scitex/_sphinx_html/_modules/scitex_context/_suppress_output.html
new file mode 100644
index 000000000..021294ca6
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_context/_suppress_output.html
@@ -0,0 +1,714 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_context._suppress_output &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_context._suppress_output</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_context._suppress_output</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-10-13 08:18:37 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex_repo/src/scitex/context/_suppress_output.py</span>
+<span class="c1"># ----------------------------------------</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+<span class="n">__FILE__</span> <span class="o">=</span> <span class="s2">&quot;./src/scitex/context/_suppress_output.py&quot;</span>
+<span class="n">__DIR__</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">__FILE__</span><span class="p">)</span>
+<span class="c1"># ----------------------------------------</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">contextlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">contextmanager</span><span class="p">,</span> <span class="n">redirect_stderr</span><span class="p">,</span> <span class="n">redirect_stdout</span>
+
+
+<div class="viewcode-block" id="suppress_output">
+<a class="viewcode-back" href="../../source/api/context.html#scitex.context.suppress_output">[docs]</a>
+<span class="nd">@contextmanager</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">suppress_output</span><span class="p">(</span><span class="n">suppress</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    A context manager that suppresses stdout and stderr.</span>
+
+<span class="sd">    Example:</span>
+<span class="sd">        with suppress_output():</span>
+<span class="sd">            print(&quot;This will not be printed to the console.&quot;)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">suppress</span><span class="p">:</span>
+        <span class="c1"># Open a file descriptor that points to os.devnull (a black hole for data)</span>
+        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">devnull</span><span class="p">,</span> <span class="s2">&quot;w&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fnull</span><span class="p">:</span>
+            <span class="c1"># Temporarily redirect stdout and stderr to the file descriptor fnull</span>
+            <span class="k">with</span> <span class="n">redirect_stdout</span><span class="p">(</span><span class="n">fnull</span><span class="p">),</span> <span class="n">redirect_stderr</span><span class="p">(</span><span class="n">fnull</span><span class="p">):</span>
+                <span class="c1"># Yield control back to the context block</span>
+                <span class="k">yield</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="c1"># If suppress is False, just yield without redirecting output</span>
+        <span class="k">yield</span></div>
+
+
+
+<span class="n">quiet</span> <span class="o">=</span> <span class="n">suppress_output</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_cv/_draw.html b/src/scitex/_sphinx_html/_modules/scitex_cv/_draw.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_cv/_draw.html
@@ -0,0 +1,925 @@
+
+
+<!DOCTYPE html>
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+  <meta charset="utf-8" />
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_cv._draw</li>
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+             
+  <h1>Source code for scitex_cv._draw</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-01-08</span>
+<span class="c1"># File: src/scitex/cv/_draw.py</span>
+<span class="sd">&quot;&quot;&quot;Drawing utilities using cv2.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Tuple</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">cv2</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+
+<div class="viewcode-block" id="rectangle">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.rectangle">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">rectangle</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">pt1</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
+    <span class="n">pt2</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
+    <span class="n">color</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">255</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span>
+    <span class="n">thickness</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">2</span><span class="p">,</span>
+    <span class="n">filled</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Draw a rectangle on an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image (modified in place).</span>
+<span class="sd">    pt1 : tuple</span>
+<span class="sd">        Top-left corner (x, y).</span>
+<span class="sd">    pt2 : tuple</span>
+<span class="sd">        Bottom-right corner (x, y).</span>
+<span class="sd">    color : tuple</span>
+<span class="sd">        BGR color.</span>
+<span class="sd">    thickness : int</span>
+<span class="sd">        Line thickness (-1 for filled).</span>
+<span class="sd">    filled : bool</span>
+<span class="sd">        If True, fill the rectangle.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Image with rectangle.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">t</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span> <span class="k">if</span> <span class="n">filled</span> <span class="k">else</span> <span class="n">thickness</span>
+    <span class="n">cv2</span><span class="o">.</span><span class="n">rectangle</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">pt1</span><span class="p">,</span> <span class="n">pt2</span><span class="p">,</span> <span class="n">color</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">img</span></div>
+
+
+
+<div class="viewcode-block" id="circle">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.circle">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">circle</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">center</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
+    <span class="n">radius</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+    <span class="n">color</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">255</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span>
+    <span class="n">thickness</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">2</span><span class="p">,</span>
+    <span class="n">filled</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Draw a circle on an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image (modified in place).</span>
+<span class="sd">    center : tuple</span>
+<span class="sd">        Center coordinates (x, y).</span>
+<span class="sd">    radius : int</span>
+<span class="sd">        Circle radius.</span>
+<span class="sd">    color : tuple</span>
+<span class="sd">        BGR color.</span>
+<span class="sd">    thickness : int</span>
+<span class="sd">        Line thickness.</span>
+<span class="sd">    filled : bool</span>
+<span class="sd">        If True, fill the circle.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Image with circle.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">t</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span> <span class="k">if</span> <span class="n">filled</span> <span class="k">else</span> <span class="n">thickness</span>
+    <span class="n">cv2</span><span class="o">.</span><span class="n">circle</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">center</span><span class="p">,</span> <span class="n">radius</span><span class="p">,</span> <span class="n">color</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">img</span></div>
+
+
+
+<div class="viewcode-block" id="line">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.line">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">line</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">pt1</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
+    <span class="n">pt2</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
+    <span class="n">color</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">255</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span>
+    <span class="n">thickness</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">2</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Draw a line on an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image (modified in place).</span>
+<span class="sd">    pt1 : tuple</span>
+<span class="sd">        Start point (x, y).</span>
+<span class="sd">    pt2 : tuple</span>
+<span class="sd">        End point (x, y).</span>
+<span class="sd">    color : tuple</span>
+<span class="sd">        BGR color.</span>
+<span class="sd">    thickness : int</span>
+<span class="sd">        Line thickness.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Image with line.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">cv2</span><span class="o">.</span><span class="n">line</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">pt1</span><span class="p">,</span> <span class="n">pt2</span><span class="p">,</span> <span class="n">color</span><span class="p">,</span> <span class="n">thickness</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">img</span></div>
+
+
+
+<div class="viewcode-block" id="text">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.text">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">text</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">position</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
+    <span class="n">color</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">255</span><span class="p">,</span> <span class="mi">255</span><span class="p">,</span> <span class="mi">255</span><span class="p">),</span>
+    <span class="n">scale</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mf">1.0</span><span class="p">,</span>
+    <span class="n">thickness</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">2</span><span class="p">,</span>
+    <span class="n">font</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;simplex&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Draw text on an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image (modified in place).</span>
+<span class="sd">    text : str</span>
+<span class="sd">        Text to draw.</span>
+<span class="sd">    position : tuple</span>
+<span class="sd">        Bottom-left corner of text (x, y).</span>
+<span class="sd">    color : tuple</span>
+<span class="sd">        BGR color.</span>
+<span class="sd">    scale : float</span>
+<span class="sd">        Font scale.</span>
+<span class="sd">    thickness : int</span>
+<span class="sd">        Text thickness.</span>
+<span class="sd">    font : str</span>
+<span class="sd">        Font type: &#39;simplex&#39;, &#39;plain&#39;, &#39;duplex&#39;, &#39;complex&#39;, &#39;triplex&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Image with text.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">font_map</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;simplex&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">FONT_HERSHEY_SIMPLEX</span><span class="p">,</span>
+        <span class="s2">&quot;plain&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">FONT_HERSHEY_PLAIN</span><span class="p">,</span>
+        <span class="s2">&quot;duplex&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">FONT_HERSHEY_DUPLEX</span><span class="p">,</span>
+        <span class="s2">&quot;complex&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">FONT_HERSHEY_COMPLEX</span><span class="p">,</span>
+        <span class="s2">&quot;triplex&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">FONT_HERSHEY_TRIPLEX</span><span class="p">,</span>
+    <span class="p">}</span>
+    <span class="n">font_face</span> <span class="o">=</span> <span class="n">font_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">font</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">FONT_HERSHEY_SIMPLEX</span><span class="p">)</span>
+    <span class="n">cv2</span><span class="o">.</span><span class="n">putText</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">position</span><span class="p">,</span> <span class="n">font_face</span><span class="p">,</span> <span class="n">scale</span><span class="p">,</span> <span class="n">color</span><span class="p">,</span> <span class="n">thickness</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">img</span></div>
+
+
+
+<div class="viewcode-block" id="polylines">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.polylines">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">polylines</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">points</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">closed</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">color</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">255</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span>
+    <span class="n">thickness</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">2</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Draw polylines on an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image (modified in place).</span>
+<span class="sd">    points : np.ndarray</span>
+<span class="sd">        Array of points with shape (N, 1, 2) or (N, 2).</span>
+<span class="sd">    closed : bool</span>
+<span class="sd">        Whether to close the polyline.</span>
+<span class="sd">    color : tuple</span>
+<span class="sd">        BGR color.</span>
+<span class="sd">    thickness : int</span>
+<span class="sd">        Line thickness.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Image with polylines.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">points</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+        <span class="n">points</span> <span class="o">=</span> <span class="n">points</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
+    <span class="n">cv2</span><span class="o">.</span><span class="n">polylines</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="p">[</span><span class="n">points</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">int32</span><span class="p">)],</span> <span class="n">closed</span><span class="p">,</span> <span class="n">color</span><span class="p">,</span> <span class="n">thickness</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">img</span></div>
+
+
+
+<div class="viewcode-block" id="arrow">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.arrow">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">arrow</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">pt1</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
+    <span class="n">pt2</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
+    <span class="n">color</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">255</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span>
+    <span class="n">thickness</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">2</span><span class="p">,</span>
+    <span class="n">tip_length</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mf">0.1</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Draw an arrowed line on an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image (modified in place).</span>
+<span class="sd">    pt1 : tuple</span>
+<span class="sd">        Start point (x, y).</span>
+<span class="sd">    pt2 : tuple</span>
+<span class="sd">        End point (arrow tip) (x, y).</span>
+<span class="sd">    color : tuple</span>
+<span class="sd">        BGR color.</span>
+<span class="sd">    thickness : int</span>
+<span class="sd">        Line thickness.</span>
+<span class="sd">    tip_length : float</span>
+<span class="sd">        Arrow tip length as fraction of line length.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Image with arrow.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">cv2</span><span class="o">.</span><span class="n">arrowedLine</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">pt1</span><span class="p">,</span> <span class="n">pt2</span><span class="p">,</span> <span class="n">color</span><span class="p">,</span> <span class="n">thickness</span><span class="p">,</span> <span class="n">tipLength</span><span class="o">=</span><span class="n">tip_length</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">img</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;rectangle&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;circle&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;line&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;text&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;polylines&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;arrow&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_cv/_filters.html b/src/scitex/_sphinx_html/_modules/scitex_cv/_filters.html
new file mode 100644
index 000000000..14eb174e4
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+++ b/src/scitex/_sphinx_html/_modules/scitex_cv/_filters.html
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+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
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+      <li class="breadcrumb-item active">scitex_cv._filters</li>
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+  <h1>Source code for scitex_cv._filters</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-01-08</span>
+<span class="c1"># File: src/scitex/cv/_filters.py</span>
+<span class="sd">&quot;&quot;&quot;Image filtering utilities using cv2.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">cv2</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+
+<div class="viewcode-block" id="blur">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.blur">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">blur</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">ksize</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">5</span><span class="p">,</span>
+    <span class="n">method</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;gaussian&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Apply blur to an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    ksize : int</span>
+<span class="sd">        Kernel size (must be odd).</span>
+<span class="sd">    method : str</span>
+<span class="sd">        Blur method: &#39;gaussian&#39;, &#39;median&#39;, &#39;box&#39;, &#39;bilateral&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Blurred image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">ksize</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">ksize</span> <span class="o">+=</span> <span class="mi">1</span>
+
+    <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;gaussian&quot;</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">GaussianBlur</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="p">(</span><span class="n">ksize</span><span class="p">,</span> <span class="n">ksize</span><span class="p">),</span> <span class="mi">0</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;median&quot;</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">medianBlur</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">ksize</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;box&quot;</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">blur</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="p">(</span><span class="n">ksize</span><span class="p">,</span> <span class="n">ksize</span><span class="p">))</span>
+    <span class="k">elif</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;bilateral&quot;</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">bilateralFilter</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">ksize</span><span class="p">,</span> <span class="mi">75</span><span class="p">,</span> <span class="mi">75</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Unknown blur method: </span><span class="si">{</span><span class="n">method</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="sharpen">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.sharpen">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">sharpen</span><span class="p">(</span><span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">strength</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mf">1.0</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Sharpen an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    strength : float</span>
+<span class="sd">        Sharpening strength.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Sharpened image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">kernel</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+        <span class="p">[</span>
+            <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
+            <span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">5</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">],</span>
+            <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
+        <span class="p">],</span>
+        <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float32</span><span class="p">,</span>
+    <span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">strength</span> <span class="o">!=</span> <span class="mf">1.0</span><span class="p">:</span>
+        <span class="n">kernel</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">eye</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="o">+</span> <span class="n">strength</span> <span class="o">*</span> <span class="p">(</span><span class="n">kernel</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">eye</span><span class="p">(</span><span class="mi">3</span><span class="p">))</span>
+
+    <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">filter2D</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="n">kernel</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="edge_detect">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.edge_detect">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">edge_detect</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">method</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;canny&quot;</span><span class="p">,</span>
+    <span class="n">low</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">50</span><span class="p">,</span>
+    <span class="n">high</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">150</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Detect edges in an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    method : str</span>
+<span class="sd">        Edge detection method: &#39;canny&#39;, &#39;sobel&#39;, &#39;laplacian&#39;.</span>
+<span class="sd">    low, high : int</span>
+<span class="sd">        Thresholds for Canny detector.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Edge image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">3</span><span class="p">:</span>
+        <span class="n">gray</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_BGR2GRAY</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">gray</span> <span class="o">=</span> <span class="n">img</span>
+
+    <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;canny&quot;</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">Canny</span><span class="p">(</span><span class="n">gray</span><span class="p">,</span> <span class="n">low</span><span class="p">,</span> <span class="n">high</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;sobel&quot;</span><span class="p">:</span>
+        <span class="n">sobel_x</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">Sobel</span><span class="p">(</span><span class="n">gray</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">CV_64F</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">ksize</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
+        <span class="n">sobel_y</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">Sobel</span><span class="p">(</span><span class="n">gray</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">CV_64F</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ksize</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">uint8</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">sobel_x</span><span class="o">**</span><span class="mi">2</span> <span class="o">+</span> <span class="n">sobel_y</span><span class="o">**</span><span class="mi">2</span><span class="p">))</span>
+    <span class="k">elif</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;laplacian&quot;</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">uint8</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">cv2</span><span class="o">.</span><span class="n">Laplacian</span><span class="p">(</span><span class="n">gray</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">CV_64F</span><span class="p">)))</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Unknown edge method: </span><span class="si">{</span><span class="n">method</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="threshold">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.threshold">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">threshold</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">thresh</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">127</span><span class="p">,</span>
+    <span class="n">maxval</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">255</span><span class="p">,</span>
+    <span class="n">method</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;binary&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Apply thresholding to an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    thresh : int</span>
+<span class="sd">        Threshold value.</span>
+<span class="sd">    maxval : int</span>
+<span class="sd">        Maximum value.</span>
+<span class="sd">    method : str</span>
+<span class="sd">        Threshold method: &#39;binary&#39;, &#39;binary_inv&#39;, &#39;trunc&#39;, &#39;tozero&#39;,</span>
+<span class="sd">        &#39;tozero_inv&#39;, &#39;otsu&#39;, &#39;adaptive_mean&#39;, &#39;adaptive_gaussian&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Thresholded image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">3</span><span class="p">:</span>
+        <span class="n">gray</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_BGR2GRAY</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">gray</span> <span class="o">=</span> <span class="n">img</span>
+
+    <span class="n">method_map</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;binary&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_BINARY</span><span class="p">,</span>
+        <span class="s2">&quot;binary_inv&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_BINARY_INV</span><span class="p">,</span>
+        <span class="s2">&quot;trunc&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_TRUNC</span><span class="p">,</span>
+        <span class="s2">&quot;tozero&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_TOZERO</span><span class="p">,</span>
+        <span class="s2">&quot;tozero_inv&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_TOZERO_INV</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;otsu&quot;</span><span class="p">:</span>
+        <span class="n">_</span><span class="p">,</span> <span class="n">result</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">threshold</span><span class="p">(</span><span class="n">gray</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">maxval</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_BINARY</span> <span class="o">+</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_OTSU</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;adaptive_mean&quot;</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">adaptiveThreshold</span><span class="p">(</span>
+            <span class="n">gray</span><span class="p">,</span> <span class="n">maxval</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">ADAPTIVE_THRESH_MEAN_C</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_BINARY</span><span class="p">,</span> <span class="mi">11</span><span class="p">,</span> <span class="mi">2</span>
+        <span class="p">)</span>
+    <span class="k">elif</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;adaptive_gaussian&quot;</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">adaptiveThreshold</span><span class="p">(</span>
+            <span class="n">gray</span><span class="p">,</span>
+            <span class="n">maxval</span><span class="p">,</span>
+            <span class="n">cv2</span><span class="o">.</span><span class="n">ADAPTIVE_THRESH_GAUSSIAN_C</span><span class="p">,</span>
+            <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_BINARY</span><span class="p">,</span>
+            <span class="mi">11</span><span class="p">,</span>
+            <span class="mi">2</span><span class="p">,</span>
+        <span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">thresh_type</span> <span class="o">=</span> <span class="n">method_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">method</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">THRESH_BINARY</span><span class="p">)</span>
+        <span class="n">_</span><span class="p">,</span> <span class="n">result</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">threshold</span><span class="p">(</span><span class="n">gray</span><span class="p">,</span> <span class="n">thresh</span><span class="p">,</span> <span class="n">maxval</span><span class="p">,</span> <span class="n">thresh_type</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">result</span></div>
+
+
+
+<div class="viewcode-block" id="denoise">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.denoise">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">denoise</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">strength</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">10</span><span class="p">,</span>
+    <span class="n">method</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;fastNl&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Denoise an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    strength : int</span>
+<span class="sd">        Denoising strength.</span>
+<span class="sd">    method : str</span>
+<span class="sd">        Denoising method: &#39;fastNl&#39;, &#39;bilateral&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Denoised image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;fastNl&quot;</span><span class="p">:</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">3</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">fastNlMeansDenoisingColored</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">strength</span><span class="p">,</span> <span class="n">strength</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">fastNlMeansDenoising</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">strength</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;bilateral&quot;</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">bilateralFilter</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="mi">9</span><span class="p">,</span> <span class="n">strength</span> <span class="o">*</span> <span class="mf">7.5</span><span class="p">,</span> <span class="n">strength</span> <span class="o">*</span> <span class="mf">7.5</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Unknown denoise method: </span><span class="si">{</span><span class="n">method</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;blur&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;sharpen&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;edge_detect&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;threshold&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;denoise&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_cv/_io.html b/src/scitex/_sphinx_html/_modules/scitex_cv/_io.html
new file mode 100644
index 000000000..0e33b5bd3
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_cv/_io.html
@@ -0,0 +1,843 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+</li>
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+        </div>
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+
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+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_cv._io</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_cv._io</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-01-08</span>
+<span class="c1"># File: src/scitex/cv/_io.py</span>
+<span class="sd">&quot;&quot;&quot;Image I/O utilities using cv2.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Union</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">cv2</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+
+<div class="viewcode-block" id="load">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.load">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">load</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">color</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">alpha</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Load an image from file.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Image file path.</span>
+<span class="sd">    color : bool</span>
+<span class="sd">        If True, load as color (BGR). If False, load as grayscale.</span>
+<span class="sd">    alpha : bool</span>
+<span class="sd">        If True, preserve alpha channel (BGRA).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Image array in BGR or grayscale format.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">alpha</span><span class="p">:</span>
+        <span class="n">img</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">IMREAD_UNCHANGED</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">color</span><span class="p">:</span>
+        <span class="n">img</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">IMREAD_COLOR</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">img</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">IMREAD_GRAYSCALE</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">img</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">FileNotFoundError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Could not load image: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">img</span></div>
+
+
+
+<div class="viewcode-block" id="save">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.save">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">save</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">quality</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">95</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Save an image to file.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Image array (BGR or grayscale).</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Output file path.</span>
+<span class="sd">    quality : int</span>
+<span class="sd">        JPEG quality (0-100) or PNG compression (0-9).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Path</span>
+<span class="sd">        Path to saved file.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="n">path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="n">ext</span> <span class="o">=</span> <span class="n">path</span><span class="o">.</span><span class="n">suffix</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">ext</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;.jpg&quot;</span><span class="p">,</span> <span class="s2">&quot;.jpeg&quot;</span><span class="p">]:</span>
+        <span class="n">params</span> <span class="o">=</span> <span class="p">[</span><span class="n">cv2</span><span class="o">.</span><span class="n">IMWRITE_JPEG_QUALITY</span><span class="p">,</span> <span class="n">quality</span><span class="p">]</span>
+    <span class="k">elif</span> <span class="n">ext</span> <span class="o">==</span> <span class="s2">&quot;.png&quot;</span><span class="p">:</span>
+        <span class="c1"># PNG compression is 0-9, map quality to this</span>
+        <span class="n">compression</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">min</span><span class="p">(</span><span class="mi">9</span><span class="p">,</span> <span class="p">(</span><span class="mi">100</span> <span class="o">-</span> <span class="n">quality</span><span class="p">)</span> <span class="o">//</span> <span class="mi">10</span><span class="p">))</span>
+        <span class="n">params</span> <span class="o">=</span> <span class="p">[</span><span class="n">cv2</span><span class="o">.</span><span class="n">IMWRITE_PNG_COMPRESSION</span><span class="p">,</span> <span class="n">compression</span><span class="p">]</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">params</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="n">success</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">imwrite</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="n">img</span><span class="p">,</span> <span class="n">params</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">success</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">OSError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Failed to save image: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">path</span></div>
+
+
+
+<div class="viewcode-block" id="to_rgb">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.to_rgb">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">to_rgb</span><span class="p">(</span><span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert BGR image to RGB.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        BGR image.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        RGB image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_GRAY2RGB</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_BGRA2RGB</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_BGR2RGB</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="to_bgr">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.to_bgr">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">to_bgr</span><span class="p">(</span><span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert RGB image to BGR.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        RGB image.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        BGR image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_GRAY2BGR</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_RGBA2BGR</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_RGB2BGR</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="to_gray">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.to_gray">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">to_gray</span><span class="p">(</span><span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert image to grayscale.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Color image (BGR or RGB).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Grayscale image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">img</span>
+    <span class="k">if</span> <span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_BGRA2GRAY</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">cvtColor</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">COLOR_BGR2GRAY</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;load&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;save&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;to_rgb&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;to_bgr&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;to_gray&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
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+  </div>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_cv/_transform.html b/src/scitex/_sphinx_html/_modules/scitex_cv/_transform.html
new file mode 100644
index 000000000..15ff426bc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_cv/_transform.html
@@ -0,0 +1,870 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_cv._transform &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_cv._transform</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_cv._transform</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-01-08</span>
+<span class="c1"># File: src/scitex/cv/_transform.py</span>
+<span class="sd">&quot;&quot;&quot;Image transformation utilities using cv2.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">cv2</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+
+<div class="viewcode-block" id="resize">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.resize">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">resize</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">size</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">scale</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">float</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">interpolation</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;linear&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resize an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    size : tuple of int, optional</span>
+<span class="sd">        Target size as (width, height).</span>
+<span class="sd">    scale : float, optional</span>
+<span class="sd">        Scale factor (alternative to size).</span>
+<span class="sd">    interpolation : str</span>
+<span class="sd">        Interpolation method: &#39;nearest&#39;, &#39;linear&#39;, &#39;cubic&#39;, &#39;area&#39;, &#39;lanczos&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Resized image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">interp_map</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;nearest&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">INTER_NEAREST</span><span class="p">,</span>
+        <span class="s2">&quot;linear&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">INTER_LINEAR</span><span class="p">,</span>
+        <span class="s2">&quot;cubic&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">INTER_CUBIC</span><span class="p">,</span>
+        <span class="s2">&quot;area&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">INTER_AREA</span><span class="p">,</span>
+        <span class="s2">&quot;lanczos&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">INTER_LANCZOS4</span><span class="p">,</span>
+    <span class="p">}</span>
+    <span class="n">interp</span> <span class="o">=</span> <span class="n">interp_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">interpolation</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">INTER_LINEAR</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">scale</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">resize</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">fx</span><span class="o">=</span><span class="n">scale</span><span class="p">,</span> <span class="n">fy</span><span class="o">=</span><span class="n">scale</span><span class="p">,</span> <span class="n">interpolation</span><span class="o">=</span><span class="n">interp</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">size</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">resize</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">size</span><span class="p">,</span> <span class="n">interpolation</span><span class="o">=</span><span class="n">interp</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Either size or scale must be provided&quot;</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="rotate">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.rotate">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">rotate</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">angle</span><span class="p">:</span> <span class="nb">float</span><span class="p">,</span>
+    <span class="n">center</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">scale</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mf">1.0</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Rotate an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    angle : float</span>
+<span class="sd">        Rotation angle in degrees (counter-clockwise).</span>
+<span class="sd">    center : tuple of int, optional</span>
+<span class="sd">        Rotation center. Defaults to image center.</span>
+<span class="sd">    scale : float</span>
+<span class="sd">        Scale factor.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Rotated image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">h</span><span class="p">,</span> <span class="n">w</span> <span class="o">=</span> <span class="n">img</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="mi">2</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">center</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">center</span> <span class="o">=</span> <span class="p">(</span><span class="n">w</span> <span class="o">//</span> <span class="mi">2</span><span class="p">,</span> <span class="n">h</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)</span>
+
+    <span class="n">matrix</span> <span class="o">=</span> <span class="n">cv2</span><span class="o">.</span><span class="n">getRotationMatrix2D</span><span class="p">(</span><span class="n">center</span><span class="p">,</span> <span class="n">angle</span><span class="p">,</span> <span class="n">scale</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">warpAffine</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">matrix</span><span class="p">,</span> <span class="p">(</span><span class="n">w</span><span class="p">,</span> <span class="n">h</span><span class="p">))</span></div>
+
+
+
+<div class="viewcode-block" id="flip">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.flip">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">flip</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">direction</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;horizontal&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Flip an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    direction : str</span>
+<span class="sd">        Flip direction: &#39;horizontal&#39;, &#39;vertical&#39;, or &#39;both&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Flipped image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">flip_map</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;horizontal&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>
+        <span class="s2">&quot;vertical&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+        <span class="s2">&quot;both&quot;</span><span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span>
+    <span class="p">}</span>
+    <span class="n">code</span> <span class="o">=</span> <span class="n">flip_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">direction</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">flip</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">code</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="crop">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.crop">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">crop</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+    <span class="n">y</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+    <span class="n">width</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+    <span class="n">height</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Crop a region from an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    x, y : int</span>
+<span class="sd">        Top-left corner coordinates.</span>
+<span class="sd">    width, height : int</span>
+<span class="sd">        Crop dimensions.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Cropped image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">img</span><span class="p">[</span><span class="n">y</span> <span class="p">:</span> <span class="n">y</span> <span class="o">+</span> <span class="n">height</span><span class="p">,</span> <span class="n">x</span> <span class="p">:</span> <span class="n">x</span> <span class="o">+</span> <span class="n">width</span><span class="p">]</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="pad">
+<a class="viewcode-back" href="../../source/api/cv.html#scitex.cv.pad">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">pad</span><span class="p">(</span>
+    <span class="n">img</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span>
+    <span class="n">top</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
+    <span class="n">bottom</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
+    <span class="n">left</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
+    <span class="n">right</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
+    <span class="n">color</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="o">...</span><span class="p">]]</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
+    <span class="n">mode</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;constant&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Pad an image.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    img : np.ndarray</span>
+<span class="sd">        Input image.</span>
+<span class="sd">    top, bottom, left, right : int</span>
+<span class="sd">        Padding sizes.</span>
+<span class="sd">    color : int or tuple</span>
+<span class="sd">        Padding color for constant mode.</span>
+<span class="sd">    mode : str</span>
+<span class="sd">        Padding mode: &#39;constant&#39;, &#39;reflect&#39;, &#39;replicate&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    np.ndarray</span>
+<span class="sd">        Padded image.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">mode_map</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;constant&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">BORDER_CONSTANT</span><span class="p">,</span>
+        <span class="s2">&quot;reflect&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">BORDER_REFLECT</span><span class="p">,</span>
+        <span class="s2">&quot;replicate&quot;</span><span class="p">:</span> <span class="n">cv2</span><span class="o">.</span><span class="n">BORDER_REPLICATE</span><span class="p">,</span>
+    <span class="p">}</span>
+    <span class="n">border_type</span> <span class="o">=</span> <span class="n">mode_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">mode</span><span class="p">,</span> <span class="n">cv2</span><span class="o">.</span><span class="n">BORDER_CONSTANT</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">cv2</span><span class="o">.</span><span class="n">copyMakeBorder</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">top</span><span class="p">,</span> <span class="n">bottom</span><span class="p">,</span> <span class="n">left</span><span class="p">,</span> <span class="n">right</span><span class="p">,</span> <span class="n">border_type</span><span class="p">,</span> <span class="n">value</span><span class="o">=</span><span class="n">color</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;resize&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;rotate&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;flip&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;crop&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;pad&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_cli/_utils.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_cli/_utils.html
new file mode 100644
index 000000000..090b3ebe3
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_dev/_cli/_utils.html
@@ -0,0 +1,870 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_dev._cli._utils &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#best-practices">Best Practices</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+
+      <div class="wy-nav-content">
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._cli._utils</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._cli._utils</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="sd">&quot;&quot;&quot;CLI utilities for consuming Result objects.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Callable</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._core.types</span><span class="w"> </span><span class="kn">import</span> <span class="n">Result</span>
+
+
+<div class="viewcode-block" id="handle_result">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.handle_result">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">handle_result</span><span class="p">(</span>
+    <span class="n">result</span><span class="p">:</span> <span class="n">Result</span><span class="p">,</span>
+    <span class="n">as_json</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">file</span><span class="p">:</span> <span class="n">Any</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Format and print a Result, return the exit code.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    result : Result</span>
+<span class="sd">        The structured result to display.</span>
+<span class="sd">    as_json : bool</span>
+<span class="sd">        If True, output full JSON. If False, human-friendly text.</span>
+<span class="sd">    file : file-like | None</span>
+<span class="sd">        Output stream. Defaults to stdout/stderr based on success.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    int</span>
+<span class="sd">        Exit code suitable for ``sys.exit()``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">as_json</span><span class="p">:</span>
+        <span class="n">out</span> <span class="o">=</span> <span class="n">file</span> <span class="ow">or</span> <span class="n">sys</span><span class="o">.</span><span class="n">stdout</span>
+        <span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">to_json</span><span class="p">(),</span> <span class="n">file</span><span class="o">=</span><span class="n">out</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+        <span class="n">out</span> <span class="o">=</span> <span class="n">file</span> <span class="ow">or</span> <span class="n">sys</span><span class="o">.</span><span class="n">stdout</span>
+        <span class="n">data</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">data</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="nb">list</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">)):</span>
+            <span class="nb">print</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="nb">str</span><span class="p">),</span> <span class="n">file</span><span class="o">=</span><span class="n">out</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="nb">print</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">file</span><span class="o">=</span><span class="n">out</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">out</span> <span class="o">=</span> <span class="n">file</span> <span class="ow">or</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span>
+        <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Error: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">error</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">file</span><span class="o">=</span><span class="n">out</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">hints_on_error</span><span class="p">:</span>
+            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">file</span><span class="o">=</span><span class="n">out</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">hint</span> <span class="ow">in</span> <span class="n">result</span><span class="o">.</span><span class="n">hints_on_error</span><span class="p">:</span>
+                <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  - </span><span class="si">{</span><span class="n">hint</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">file</span><span class="o">=</span><span class="n">out</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">exit_code</span></div>
+
+
+
+<div class="viewcode-block" id="run_as_cli">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.run_as_cli">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">run_as_cli</span><span class="p">(</span>
+    <span class="n">fn</span><span class="p">:</span> <span class="n">Callable</span><span class="p">,</span>
+    <span class="n">as_json</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Call a ``@supports_return_as`` function and exit with proper code.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    fn : Callable</span>
+<span class="sd">        A function decorated with ``@supports_return_as``.</span>
+<span class="sd">    as_json : bool</span>
+<span class="sd">        If True, output full JSON.</span>
+<span class="sd">    **kwargs</span>
+<span class="sd">        Arguments to pass to ``fn``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">fn</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;result&quot;</span><span class="p">)</span>
+    <span class="n">code</span> <span class="o">=</span> <span class="n">handle_result</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">as_json</span><span class="o">=</span><span class="n">as_json</span><span class="p">)</span>
+    <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="n">code</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="wrap_as_cli">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.wrap_as_cli">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">wrap_as_cli</span><span class="p">(</span>
+    <span class="n">fn</span><span class="p">:</span> <span class="n">Callable</span><span class="p">,</span>
+    <span class="n">as_json</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Call any function and display its result via CLI.</span>
+
+<span class="sd">    Like ``wrap_as_mcp`` but for terminal output. Wraps any plain</span>
+<span class="sd">    function in Result, formats based on ``as_json``, and exits</span>
+<span class="sd">    with proper exit code.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    fn : Callable</span>
+<span class="sd">        Any callable returning data or raising exceptions.</span>
+<span class="sd">    as_json : bool</span>
+<span class="sd">        If True, output full JSON Result. If False, human-friendly text.</span>
+<span class="sd">    **kwargs</span>
+<span class="sd">        Arguments to pass to ``fn``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">.._core.errors</span><span class="w"> </span><span class="kn">import</span> <span class="n">classify_exception</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">data</span> <span class="o">=</span> <span class="n">fn</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">Result</span><span class="p">(</span><span class="n">success</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="n">data</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+        <span class="n">error_code</span> <span class="o">=</span> <span class="n">classify_exception</span><span class="p">(</span><span class="n">exc</span><span class="p">)</span>
+        <span class="n">hints_on_error</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="n">suggestion</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;suggestion&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">suggestion</span><span class="p">:</span>
+            <span class="n">hints_on_error</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">suggestion</span><span class="p">)</span>
+        <span class="n">suggestions</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;suggestions&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">suggestions</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">suggestions</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+            <span class="n">hints_on_error</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">suggestions</span><span class="p">)</span>
+        <span class="n">context</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;context&quot;</span><span class="p">,</span> <span class="p">{})</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">Result</span><span class="p">(</span>
+            <span class="n">success</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+            <span class="n">error</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">exc</span><span class="p">),</span>
+            <span class="n">error_code</span><span class="o">=</span><span class="n">error_code</span><span class="o">.</span><span class="n">value</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="n">context</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">context</span><span class="p">,</span> <span class="nb">dict</span><span class="p">)</span> <span class="k">else</span> <span class="p">{},</span>
+            <span class="n">hints_on_error</span><span class="o">=</span><span class="n">hints_on_error</span><span class="p">,</span>
+        <span class="p">)</span>
+
+    <span class="n">code</span> <span class="o">=</span> <span class="n">handle_result</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">as_json</span><span class="o">=</span><span class="n">as_json</span><span class="p">)</span>
+    <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="n">code</span><span class="p">)</span></div>
+
+
+
+<span class="c1"># --- Reusable CLI option factories ---</span>
+
+
+<div class="viewcode-block" id="json_option">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.json_option">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">json_option</span><span class="p">(</span><span class="n">fn</span><span class="p">:</span> <span class="n">Callable</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Callable</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Click decorator: adds ``--json`` flag as ``as_json`` parameter.</span>
+
+<span class="sd">    Uses lazy ``import click`` so scitex-dev stays stdlib-only.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">click</span>
+
+    <span class="k">return</span> <span class="n">click</span><span class="o">.</span><span class="n">option</span><span class="p">(</span>
+        <span class="s2">&quot;--json&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;as_json&quot;</span><span class="p">,</span>
+        <span class="n">is_flag</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="n">help</span><span class="o">=</span><span class="s2">&quot;Output as structured JSON (Result envelope).&quot;</span><span class="p">,</span>
+    <span class="p">)(</span><span class="n">fn</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="dry_run_option">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.dry_run_option">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">dry_run_option</span><span class="p">(</span><span class="n">fn</span><span class="p">:</span> <span class="n">Callable</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Callable</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Click decorator: adds ``--dry-run`` flag.</span>
+
+<span class="sd">    Uses lazy ``import click`` so scitex-dev stays stdlib-only.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">click</span>
+
+    <span class="k">return</span> <span class="n">click</span><span class="o">.</span><span class="n">option</span><span class="p">(</span>
+        <span class="s2">&quot;--dry-run&quot;</span><span class="p">,</span>
+        <span class="n">is_flag</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="n">help</span><span class="o">=</span><span class="s2">&quot;Preview changes without executing.&quot;</span><span class="p">,</span>
+    <span class="p">)(</span><span class="n">fn</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="add_json_argument">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.add_json_argument">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">add_json_argument</span><span class="p">(</span><span class="n">parser</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Add ``--json`` flag to an argparse parser.&quot;&quot;&quot;</span>
+    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span>
+        <span class="s2">&quot;--json&quot;</span><span class="p">,</span>
+        <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;as_json&quot;</span><span class="p">,</span>
+        <span class="n">action</span><span class="o">=</span><span class="s2">&quot;store_true&quot;</span><span class="p">,</span>
+        <span class="n">default</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+        <span class="n">help</span><span class="o">=</span><span class="s2">&quot;Output as structured JSON (Result envelope).&quot;</span><span class="p">,</span>
+    <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="add_dry_run_argument">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.add_dry_run_argument">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">add_dry_run_argument</span><span class="p">(</span><span class="n">parser</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Add ``--dry-run`` flag to an argparse parser.&quot;&quot;&quot;</span>
+    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span>
+        <span class="s2">&quot;--dry-run&quot;</span><span class="p">,</span>
+        <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;dry_run&quot;</span><span class="p">,</span>
+        <span class="n">action</span><span class="o">=</span><span class="s2">&quot;store_true&quot;</span><span class="p">,</span>
+        <span class="n">default</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+        <span class="n">help</span><span class="o">=</span><span class="s2">&quot;Preview changes without executing.&quot;</span><span class="p">,</span>
+    <span class="p">)</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_core/decorators.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_core/decorators.html
new file mode 100644
index 000000000..8d1edefaf
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_dev/_core/decorators.html
@@ -0,0 +1,746 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_dev._core.decorators &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../../genindex.html" />
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+</head>
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+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
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+</ul>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._core.decorators</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._core.decorators</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="sd">&quot;&quot;&quot;Decorator for opt-in structured Result wrapping.</span>
+
+<span class="sd">The ``@supports_return_as`` decorator adds a ``return_as`` keyword</span>
+<span class="sd">parameter to any function. By default the function behaves normally.</span>
+<span class="sd">With ``return_as=&quot;result&quot;``, the return value is wrapped in a Result.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">functools</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Callable</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.errors</span><span class="w"> </span><span class="kn">import</span> <span class="n">classify_exception</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.types</span><span class="w"> </span><span class="kn">import</span> <span class="n">Result</span>
+
+
+<div class="viewcode-block" id="supports_return_as">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.supports_return_as">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">supports_return_as</span><span class="p">(</span><span class="n">fn</span><span class="p">:</span> <span class="n">Callable</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Callable</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Add ``return_as=&quot;result&quot;`` support to a function.</span>
+
+<span class="sd">    - ``return_as=None`` (default): data returned, exceptions raised.</span>
+<span class="sd">    - ``return_as=&quot;result&quot;``: wrapped in ``Result``.</span>
+<span class="sd">    - Any other value: passed through to the original function.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; @supports_return_as</span>
+<span class="sd">    ... def add(a: int, b: int) -&gt; int:</span>
+<span class="sd">    ...     return a + b</span>
+<span class="sd">    &gt;&gt;&gt; add(1, 2)</span>
+<span class="sd">    3</span>
+<span class="sd">    &gt;&gt;&gt; result = add(1, 2, return_as=&quot;result&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; result.success</span>
+<span class="sd">    True</span>
+<span class="sd">    &gt;&gt;&gt; result.data</span>
+<span class="sd">    3</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="nd">@functools</span><span class="o">.</span><span class="n">wraps</span><span class="p">(</span><span class="n">fn</span><span class="p">)</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">wrapper</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span> <span class="n">return_as</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">return_as</span> <span class="o">!=</span> <span class="s2">&quot;result&quot;</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">return_as</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">kwargs</span><span class="p">[</span><span class="s2">&quot;return_as&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">return_as</span>
+            <span class="k">return</span> <span class="n">fn</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">data</span> <span class="o">=</span> <span class="n">fn</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+            <span class="k">return</span> <span class="n">Result</span><span class="p">(</span><span class="n">success</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="n">data</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+            <span class="n">error_code</span> <span class="o">=</span> <span class="n">classify_exception</span><span class="p">(</span><span class="n">exc</span><span class="p">)</span>
+            <span class="n">suggestion</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;suggestion&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+            <span class="n">context</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;context&quot;</span><span class="p">,</span> <span class="p">{})</span>
+            <span class="n">hints_on_error</span> <span class="o">=</span> <span class="p">[]</span>
+            <span class="k">if</span> <span class="n">suggestion</span><span class="p">:</span>
+                <span class="n">hints_on_error</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">suggestion</span><span class="p">)</span>
+            <span class="n">suggestions</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;suggestions&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">suggestions</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">suggestions</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+                <span class="n">hints_on_error</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">suggestions</span><span class="p">)</span>
+
+            <span class="k">return</span> <span class="n">Result</span><span class="p">(</span>
+                <span class="n">success</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+                <span class="n">error</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">exc</span><span class="p">),</span>
+                <span class="n">error_code</span><span class="o">=</span><span class="n">error_code</span><span class="o">.</span><span class="n">value</span><span class="p">,</span>
+                <span class="n">context</span><span class="o">=</span><span class="n">context</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">context</span><span class="p">,</span> <span class="nb">dict</span><span class="p">)</span> <span class="k">else</span> <span class="p">{},</span>
+                <span class="n">hints_on_error</span><span class="o">=</span><span class="n">hints_on_error</span><span class="p">,</span>
+            <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">wrapper</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_core/errors.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_core/errors.html
new file mode 100644
index 000000000..9dd1e3f47
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_dev/_core/errors.html
@@ -0,0 +1,823 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_dev._core.errors &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../../_static/js/theme.js"></script>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+          <a href="../../../index.html">SciTeX</a>
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._core.errors</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._core.errors</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="sd">&quot;&quot;&quot;Error code registry for LLM-friendly error categorization.</span>
+
+<span class="sd">Provides machine-readable error codes that map to CLI exit codes</span>
+<span class="sd">and guide LLM error recovery.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">enum</span><span class="w"> </span><span class="kn">import</span> <span class="n">Enum</span>
+
+
+<div class="viewcode-block" id="ErrorCode">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.ErrorCode">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ErrorCode</span><span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="n">Enum</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Machine-readable error codes for structured error responses.&quot;&quot;&quot;</span>
+
+    <span class="n">OK</span> <span class="o">=</span> <span class="s2">&quot;E000&quot;</span>
+    <span class="n">VALIDATION</span> <span class="o">=</span> <span class="s2">&quot;E001&quot;</span>
+    <span class="n">FILE_NOT_FOUND</span> <span class="o">=</span> <span class="s2">&quot;E002&quot;</span>
+    <span class="n">PERMISSION</span> <span class="o">=</span> <span class="s2">&quot;E003&quot;</span>
+    <span class="n">DEPENDENCY</span> <span class="o">=</span> <span class="s2">&quot;E004&quot;</span>
+    <span class="n">TIMEOUT</span> <span class="o">=</span> <span class="s2">&quot;E005&quot;</span>
+    <span class="n">RATE_LIMITED</span> <span class="o">=</span> <span class="s2">&quot;E006&quot;</span>
+    <span class="n">NETWORK</span> <span class="o">=</span> <span class="s2">&quot;E007&quot;</span>
+    <span class="n">CONFIG</span> <span class="o">=</span> <span class="s2">&quot;E008&quot;</span>
+    <span class="n">CONFLICT</span> <span class="o">=</span> <span class="s2">&quot;E009&quot;</span>
+    <span class="n">INTERNAL</span> <span class="o">=</span> <span class="s2">&quot;E999&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">exit_code</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;POSIX-style exit code for this error category.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="n">_EXIT_CODES</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span></div>
+
+
+
+<span class="n">_EXIT_CODES</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">OK</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">VALIDATION</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">FILE_NOT_FOUND</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">PERMISSION</span><span class="p">:</span> <span class="mi">4</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">DEPENDENCY</span><span class="p">:</span> <span class="mi">3</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">TIMEOUT</span><span class="p">:</span> <span class="mi">5</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">RATE_LIMITED</span><span class="p">:</span> <span class="mi">5</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">NETWORK</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">CONFIG</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">CONFLICT</span><span class="p">:</span> <span class="mi">6</span><span class="p">,</span>
+    <span class="n">ErrorCode</span><span class="o">.</span><span class="n">INTERNAL</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>
+<span class="p">}</span>
+
+<span class="n">_BUILTIN_ERROR_MAP</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">type</span><span class="p">,</span> <span class="n">ErrorCode</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="ne">FileNotFoundError</span><span class="p">:</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">FILE_NOT_FOUND</span><span class="p">,</span>
+    <span class="ne">PermissionError</span><span class="p">:</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">PERMISSION</span><span class="p">,</span>
+    <span class="ne">TimeoutError</span><span class="p">:</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">TIMEOUT</span><span class="p">,</span>
+    <span class="ne">ConnectionError</span><span class="p">:</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">NETWORK</span><span class="p">,</span>
+    <span class="ne">ImportError</span><span class="p">:</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">DEPENDENCY</span><span class="p">,</span>
+    <span class="ne">ValueError</span><span class="p">:</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">VALIDATION</span><span class="p">,</span>
+    <span class="ne">TypeError</span><span class="p">:</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">VALIDATION</span><span class="p">,</span>
+    <span class="ne">KeyError</span><span class="p">:</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">CONFIG</span><span class="p">,</span>
+<span class="p">}</span>
+
+
+<div class="viewcode-block" id="ScitexError">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.ScitexError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ScitexError</span><span class="p">(</span><span class="ne">Exception</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Canonical SciTeX exception for structured failures.</span>
+
+<span class="sd">    Use when the failure crosses an MCP / CLI / HTTP boundary and the caller</span>
+<span class="sd">    (often an LLM agent) needs a machine-readable category plus a human</span>
+<span class="sd">    remediation hint. For plain Python errors raised inside a script,</span>
+<span class="sd">    prefer the standard library exceptions (``ValueError``, ``FileNotFoundError``,</span>
+<span class="sd">    etc.) — see ``general/03_interface/01_python-api/09_error-handling.md``.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    message : str</span>
+<span class="sd">        Human-readable description of the failure.</span>
+<span class="sd">    code : ErrorCode, optional</span>
+<span class="sd">        Machine-readable category. Defaults to ``ErrorCode.INTERNAL``.</span>
+<span class="sd">    remediation : str, optional</span>
+<span class="sd">        How to fix it (e.g. ``&quot;pip install scitex-io[h5]&quot;``).</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; raise ScitexError(</span>
+<span class="sd">    ...     &quot;h5py not installed&quot;,</span>
+<span class="sd">    ...     code=ErrorCode.DEPENDENCY,</span>
+<span class="sd">    ...     remediation=&quot;pip install scitex-io[h5]&quot;,</span>
+<span class="sd">    ... )</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">message</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="o">*</span><span class="p">,</span>
+        <span class="n">code</span><span class="p">:</span> <span class="n">ErrorCode</span> <span class="o">=</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">INTERNAL</span><span class="p">,</span>
+        <span class="n">remediation</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="n">message</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">message</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">error_code</span> <span class="o">=</span> <span class="n">code</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">remediation</span> <span class="o">=</span> <span class="n">remediation</span>
+
+<div class="viewcode-block" id="ScitexError.to_dict">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.ScitexError.to_dict">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">to_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Serialize to the structured shape consumed by MCP tools and `--json`.&quot;&quot;&quot;</span>
+        <span class="n">out</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="s2">&quot;code&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">error_code</span><span class="o">.</span><span class="n">value</span><span class="p">,</span>
+            <span class="s2">&quot;message&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">message</span><span class="p">,</span>
+        <span class="p">}</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">remediation</span><span class="p">:</span>
+            <span class="n">out</span><span class="p">[</span><span class="s2">&quot;remediation&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">remediation</span>
+        <span class="k">return</span> <span class="n">out</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+        <span class="n">base</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;[</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">error_code</span><span class="o">.</span><span class="n">value</span><span class="si">}</span><span class="s2">] </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">message</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">remediation</span><span class="p">:</span>
+            <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">base</span><span class="si">}</span><span class="s2"> (remediation: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">remediation</span><span class="si">}</span><span class="s2">)&quot;</span>
+        <span class="k">return</span> <span class="n">base</span></div>
+
+
+
+<div class="viewcode-block" id="classify_exception">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.classify_exception">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">classify_exception</span><span class="p">(</span><span class="n">exc</span><span class="p">:</span> <span class="ne">Exception</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">ErrorCode</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Classify an exception into an ErrorCode.</span>
+
+<span class="sd">    Checks for a ``.error_code`` attribute first (SciTeXError convention),</span>
+<span class="sd">    then falls back to built-in exception type mapping.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">code</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;error_code&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">code</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">code</span><span class="p">,</span> <span class="n">ErrorCode</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">code</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">code</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="k">return</span> <span class="n">ErrorCode</span><span class="p">(</span><span class="n">code</span><span class="p">)</span>
+            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+                <span class="k">pass</span>
+
+    <span class="k">for</span> <span class="n">exc_type</span><span class="p">,</span> <span class="n">error_code</span> <span class="ow">in</span> <span class="n">_BUILTIN_ERROR_MAP</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">exc_type</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">error_code</span>
+
+    <span class="k">return</span> <span class="n">ErrorCode</span><span class="o">.</span><span class="n">INTERNAL</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_core/imports.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_core/imports.html
new file mode 100644
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#requirements">Requirements</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+
+      <div class="wy-nav-content">
+        <div class="rst-content">
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._core.imports</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._core.imports</h1><div class="highlight"><pre>
+<span></span><span class="sd">&quot;&quot;&quot;Optional-import helper for SciTeX standalone packages.</span>
+
+<span class="sd">Use in a `__init__.py` to replace inline `try/except ImportError` blocks:</span>
+
+<span class="sd">    from scitex_dev import try_import_optional</span>
+
+<span class="sd">    h5py = try_import_optional(&quot;h5py&quot;, extra=&quot;hdf5&quot;, pkg=&quot;scitex-io&quot;)</span>
+<span class="sd">    ndarray = try_import_optional(&quot;numpy&quot;, attr=&quot;ndarray&quot;)  # always installed</span>
+<span class="sd">    rel_mod = try_import_optional(&quot;.sub.thing&quot;, package=&quot;scitex_io&quot;)</span>
+
+<span class="sd">Returns the imported object on success and ``None`` on ``ImportError``.</span>
+<span class="sd">The original failure (module name + extra/pkg metadata) is recorded on the</span>
+<span class="sd">returned ``None`` is impossible — instead, callers can read the registry via</span>
+<span class="sd">``last_install_hint(name)`` to construct precise error messages at the</span>
+<span class="sd">use-site without re-raising.</span>
+
+<span class="sd">The `NotInstalled` sentinel proposal (see python-api skill TODO.md) is</span>
+<span class="sd">deferred — Pattern A (`X = None` always present in `__all__`) plus a</span>
+<span class="sd">companion `XXX_AVAILABLE = X is not None` flag covers all current use cases.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">importlib</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;try_import_optional&quot;</span><span class="p">,</span> <span class="s2">&quot;last_install_hint&quot;</span><span class="p">,</span> <span class="s2">&quot;InstallHint&quot;</span><span class="p">]</span>
+
+
+<div class="viewcode-block" id="InstallHint">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.InstallHint">[docs]</a>
+<span class="nd">@dataclass</span><span class="p">(</span><span class="n">frozen</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">InstallHint</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Metadata to help a caller surface a useful install message.&quot;&quot;&quot;</span>
+
+    <span class="n">module</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">extra</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span>
+    <span class="n">pkg</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">message</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">pkg</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">extra</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;`</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="si">}</span><span class="s2">` is required. &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;Install with: pip install &#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">pkg</span><span class="si">}</span><span class="s2">[</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">extra</span><span class="si">}</span><span class="s2">]&#39;&quot;</span>
+            <span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">extra</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;`</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="si">}</span><span class="s2">` is required. &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;Re-install with the &#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">extra</span><span class="si">}</span><span class="s2">&#39; extra.&quot;</span>
+            <span class="p">)</span>
+        <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;`</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="si">}</span><span class="s2">` is required. Install with: pip install </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="si">}</span><span class="s2">&quot;</span></div>
+
+
+
+<span class="n">_HINTS</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">InstallHint</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+
+
+<div class="viewcode-block" id="last_install_hint">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.last_install_hint">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">last_install_hint</span><span class="p">(</span><span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">InstallHint</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the most recently recorded install hint for ``name`` (or ``None``).&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_HINTS</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="try_import_optional">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.try_import_optional">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">try_import_optional</span><span class="p">(</span>
+    <span class="n">module_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">attr</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">extra</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">pkg</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">package</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Import ``module_path``; return ``None`` on ``ImportError``.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    module_path : str</span>
+<span class="sd">        Module to import. Leading ``.`` triggers relative resolution against</span>
+<span class="sd">        ``package`` (mirrors :func:`importlib.import_module`).</span>
+<span class="sd">    attr : str, optional</span>
+<span class="sd">        If given, return ``getattr(module, attr)`` instead of the module.</span>
+<span class="sd">        A missing attribute is treated identically to a failed import.</span>
+<span class="sd">    extra : str, optional</span>
+<span class="sd">        Name of the pip extra that pulls this dependency (used for the</span>
+<span class="sd">        install hint surfaced via :func:`last_install_hint`).</span>
+<span class="sd">    pkg : str, optional</span>
+<span class="sd">        Distribution name owning the extra (e.g. ``&quot;scitex-io&quot;``).</span>
+<span class="sd">    package : str, optional</span>
+<span class="sd">        Anchor for relative imports.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    object or None</span>
+<span class="sd">        The imported module/attribute, or ``None`` on failure.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">module_path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="n">package</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="s2">&quot;relative imports require an explicit `package=` argument &quot;</span>
+            <span class="sa">f</span><span class="s2">&quot;(got module_path=</span><span class="si">{</span><span class="n">module_path</span><span class="si">!r}</span><span class="s2">)&quot;</span>
+        <span class="p">)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">mod</span> <span class="o">=</span> <span class="n">importlib</span><span class="o">.</span><span class="n">import_module</span><span class="p">(</span><span class="n">module_path</span><span class="p">,</span> <span class="n">package</span><span class="o">=</span><span class="n">package</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="n">_HINTS</span><span class="p">[</span><span class="n">module_path</span><span class="p">]</span> <span class="o">=</span> <span class="n">InstallHint</span><span class="p">(</span><span class="n">module</span><span class="o">=</span><span class="n">module_path</span><span class="p">,</span> <span class="n">extra</span><span class="o">=</span><span class="n">extra</span><span class="p">,</span> <span class="n">pkg</span><span class="o">=</span><span class="n">pkg</span><span class="p">)</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">if</span> <span class="n">attr</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">mod</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">mod</span><span class="p">,</span> <span class="n">attr</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">AttributeError</span><span class="p">:</span>
+        <span class="n">_HINTS</span><span class="p">[</span><span class="n">module_path</span><span class="p">]</span> <span class="o">=</span> <span class="n">InstallHint</span><span class="p">(</span><span class="n">module</span><span class="o">=</span><span class="n">module_path</span><span class="p">,</span> <span class="n">extra</span><span class="o">=</span><span class="n">extra</span><span class="p">,</span> <span class="n">pkg</span><span class="o">=</span><span class="n">pkg</span><span class="p">)</span>
+        <span class="k">return</span> <span class="kc">None</span></div>
+
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_core/side_effects.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_core/side_effects.html
new file mode 100644
index 000000000..0559b4f7a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_dev/_core/side_effects.html
@@ -0,0 +1,717 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_dev._core.side_effects &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=9edc463e" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._core.side_effects</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._core.side_effects</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="sd">&quot;&quot;&quot;Side effect declaration for mutation operations.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Literal</span>
+
+<span class="n">SideEffectType</span> <span class="o">=</span> <span class="n">Literal</span><span class="p">[</span>
+    <span class="s2">&quot;file_create&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;file_modify&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;file_delete&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;network&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;state_change&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;cache_write&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+
+<div class="viewcode-block" id="SideEffect">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.SideEffect">[docs]</a>
+<span class="nd">@dataclass</span><span class="p">(</span><span class="n">frozen</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">SideEffect</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;A declared side effect of a function.</span>
+
+<span class="sd">    Attributes</span>
+<span class="sd">    ----------</span>
+<span class="sd">    type : str</span>
+<span class="sd">        Category (file_create, file_modify, file_delete, network,</span>
+<span class="sd">        state_change, cache_write).</span>
+<span class="sd">    target : str</span>
+<span class="sd">        What is affected (file path, URL, description).</span>
+<span class="sd">    undoable : bool</span>
+<span class="sd">        Whether the effect can be reversed.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="nb">type</span><span class="p">:</span> <span class="n">SideEffectType</span>
+    <span class="n">target</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">undoable</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+        <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">type</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">target</span><span class="si">}</span><span class="s2">&quot;</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_core/types.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_core/types.html
new file mode 100644
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+<li class="toctree-l1"><a class="reference internal" href="../../../installation.html">Installation</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._core.types</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._core.types</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="sd">&quot;&quot;&quot;Core Result type for LLM-friendly structured responses.</span>
+
+<span class="sd">The Result type wraps function return values with metadata needed by</span>
+<span class="sd">CLI and MCP consumers: success status, error codes, side effects,</span>
+<span class="sd">error hints, and idempotency flags.</span>
+
+<span class="sd">Python API users never see this type by default -- it is opt-in via</span>
+<span class="sd">the ``return_as=&quot;result&quot;`` parameter added by ``@supports_return_as``.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">asdict</span><span class="p">,</span> <span class="n">dataclass</span><span class="p">,</span> <span class="n">field</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Generic</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">TypeVar</span>
+
+<span class="n">T</span> <span class="o">=</span> <span class="n">TypeVar</span><span class="p">(</span><span class="s2">&quot;T&quot;</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_normalize_hints</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Normalize hint values: None, &quot;&quot;, and [] all become [].&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">value</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">value</span> <span class="o">==</span> <span class="s2">&quot;&quot;</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="k">return</span> <span class="p">[</span><span class="n">value</span><span class="p">]</span> <span class="k">if</span> <span class="n">value</span> <span class="k">else</span> <span class="p">[]</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+        <span class="k">return</span> <span class="p">[</span><span class="n">s</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">value</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span>  <span class="c1"># filter out None/&quot;&quot; items</span>
+    <span class="k">return</span> <span class="p">[]</span>
+
+
+<div class="viewcode-block" id="Result">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.Result">[docs]</a>
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">Result</span><span class="p">(</span><span class="n">Generic</span><span class="p">[</span><span class="n">T</span><span class="p">]):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Structured result wrapping function output with metadata.</span>
+
+<span class="sd">    Attributes</span>
+<span class="sd">    ----------</span>
+<span class="sd">    success : bool</span>
+<span class="sd">        Whether the operation succeeded.</span>
+<span class="sd">    data : T | None</span>
+<span class="sd">        The return value on success; None on failure.</span>
+<span class="sd">    error : str | None</span>
+<span class="sd">        Human-readable error message on failure.</span>
+<span class="sd">    error_code : str | None</span>
+<span class="sd">        Machine-readable error code (e.g. &quot;E001&quot;).</span>
+<span class="sd">    context : dict</span>
+<span class="sd">        Additional context (file paths, parameters, etc.).</span>
+<span class="sd">    side_effects : list[str]</span>
+<span class="sd">        Description of mutations performed.</span>
+<span class="sd">    hints_on_success : list[str]</span>
+<span class="sd">        Related tools the consumer might want (light, &quot;see also&quot; style).</span>
+<span class="sd">        Reserved for future use — currently empty.</span>
+<span class="sd">    hints_on_warning : list[str]</span>
+<span class="sd">        Hints for partial success, deprecation, or approaching limits.</span>
+<span class="sd">        Reserved for future use — currently empty.</span>
+<span class="sd">    hints_on_error : list[str]</span>
+<span class="sd">        Recovery guidance for expected failures (FAQ-style).</span>
+<span class="sd">        Accepts None, &quot;&quot;, a single string, or a list.</span>
+<span class="sd">    idempotent : bool</span>
+<span class="sd">        Whether the operation is safe to retry.</span>
+<span class="sd">    version : str | None</span>
+<span class="sd">        API version for response schema evolution.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="n">success</span><span class="p">:</span> <span class="nb">bool</span>
+    <span class="n">data</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">T</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">error</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">error_code</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">context</span><span class="p">:</span> <span class="nb">dict</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">dict</span><span class="p">)</span>
+    <span class="n">side_effects</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+    <span class="n">hints_on_success</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+    <span class="n">hints_on_warning</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+    <span class="n">hints_on_error</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+    <span class="n">idempotent</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span>
+    <span class="n">version</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+<div class="viewcode-block" id="Result.__post_init__">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.Result.__post_init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">__post_init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Normalize hint fields (accept None, &quot;&quot;, single string, or list).&quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">side_effects</span> <span class="o">=</span> <span class="n">_normalize_hints</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">side_effects</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">hints_on_success</span> <span class="o">=</span> <span class="n">_normalize_hints</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">hints_on_success</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">hints_on_warning</span> <span class="o">=</span> <span class="n">_normalize_hints</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">hints_on_warning</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">hints_on_error</span> <span class="o">=</span> <span class="n">_normalize_hints</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">hints_on_error</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="Result.to_dict">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.Result.to_dict">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">to_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Convert to a plain dictionary, stripping None values.&quot;&quot;&quot;</span>
+        <span class="n">d</span> <span class="o">=</span> <span class="n">asdict</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+        <span class="k">return</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">()</span> <span class="k">if</span> <span class="n">v</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">}</span></div>
+
+
+<div class="viewcode-block" id="Result.to_json">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.Result.to_json">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">indent</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">2</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Serialize to a JSON string.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">to_dict</span><span class="p">(),</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="nb">str</span><span class="p">)</span></div>
+
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">exit_code</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Map error_code to a CLI exit code.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+            <span class="k">return</span> <span class="mi">0</span>
+        <span class="k">return</span> <span class="n">_error_code_to_exit</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">error_code</span><span class="p">)</span>
+
+<div class="viewcode-block" id="Result.json_schema">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.Result.json_schema">[docs]</a>
+    <span class="nd">@classmethod</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">json_schema</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Return JSON Schema describing the Result envelope.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="n">RESULT_SCHEMA</span><span class="p">)</span></div>
+</div>
+
+
+
+<span class="n">RESULT_SCHEMA</span><span class="p">:</span> <span class="nb">dict</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;object&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Standardized Result envelope returned by all SciTeX MCP tools.&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;properties&quot;</span><span class="p">:</span> <span class="p">{</span>
+        <span class="s2">&quot;success&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;boolean&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Whether the operation succeeded.&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;data&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Tool-specific return value (any JSON type).&quot;</span><span class="p">},</span>
+        <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;string&quot;</span><span class="p">,</span> <span class="s2">&quot;null&quot;</span><span class="p">],</span>
+            <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Human-readable error message.&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;error_code&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;string&quot;</span><span class="p">,</span> <span class="s2">&quot;null&quot;</span><span class="p">],</span>
+            <span class="s2">&quot;pattern&quot;</span><span class="p">:</span> <span class="s2">&quot;^E</span><span class="se">\\</span><span class="s2">d</span><span class="si">{3}</span><span class="s2">$&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Machine-readable error code (E001-E999).&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;context&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;object&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Additional context (file paths, params).&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;side_effects&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;array&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;items&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;string&quot;</span><span class="p">},</span>
+            <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Mutations performed (file writes, network calls).&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;hints_on_success&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;array&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;items&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;string&quot;</span><span class="p">},</span>
+            <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Related tools or actions (reserved, currently empty).&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;hints_on_warning&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;array&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;items&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;string&quot;</span><span class="p">},</span>
+            <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Hints for partial success, deprecation (reserved, currently empty).&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;hints_on_error&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;array&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;items&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;string&quot;</span><span class="p">},</span>
+            <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Recovery guidance for expected failures (FAQ-style).&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;idempotent&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;boolean&quot;</span><span class="p">,</span> <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;Safe to retry?&quot;</span><span class="p">},</span>
+        <span class="s2">&quot;version&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;string&quot;</span><span class="p">,</span> <span class="s2">&quot;null&quot;</span><span class="p">],</span> <span class="s2">&quot;description&quot;</span><span class="p">:</span> <span class="s2">&quot;API version.&quot;</span><span class="p">},</span>
+    <span class="p">},</span>
+    <span class="s2">&quot;required&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;success&quot;</span><span class="p">],</span>
+<span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_error_code_to_exit</span><span class="p">(</span><span class="n">error_code</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Map an error code string to a CLI exit code.&quot;&quot;&quot;</span>
+    <span class="n">_EXIT_MAP</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;E000&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+        <span class="s2">&quot;E001&quot;</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span>  <span class="c1"># validation</span>
+        <span class="s2">&quot;E002&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>  <span class="c1"># file not found</span>
+        <span class="s2">&quot;E003&quot;</span><span class="p">:</span> <span class="mi">4</span><span class="p">,</span>  <span class="c1"># permission</span>
+        <span class="s2">&quot;E004&quot;</span><span class="p">:</span> <span class="mi">3</span><span class="p">,</span>  <span class="c1"># dependency</span>
+        <span class="s2">&quot;E005&quot;</span><span class="p">:</span> <span class="mi">5</span><span class="p">,</span>  <span class="c1"># timeout</span>
+        <span class="s2">&quot;E006&quot;</span><span class="p">:</span> <span class="mi">5</span><span class="p">,</span>  <span class="c1"># rate limited</span>
+        <span class="s2">&quot;E007&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>  <span class="c1"># network</span>
+        <span class="s2">&quot;E008&quot;</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span>  <span class="c1"># config</span>
+        <span class="s2">&quot;E009&quot;</span><span class="p">:</span> <span class="mi">6</span><span class="p">,</span>  <span class="c1"># conflict</span>
+        <span class="s2">&quot;E999&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>  <span class="c1"># internal</span>
+    <span class="p">}</span>
+    <span class="k">if</span> <span class="n">error_code</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="mi">1</span>
+    <span class="k">return</span> <span class="n">_EXIT_MAP</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">error_code</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_docs/docs.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_docs/docs.html
new file mode 100644
index 000000000..93c4bcf2a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_dev/_docs/docs.html
@@ -0,0 +1,1108 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
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+<li class="toctree-l1"><a class="reference internal" href="../../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#requirements">Requirements</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._docs.docs</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._docs.docs</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="sd">&quot;&quot;&quot;Public API for docs aggregation and retrieval across the SciTeX ecosystem.</span>
+
+<span class="sd">Usage:</span>
+<span class="sd">    from scitex_dev import get_docs, build_docs</span>
+
+<span class="sd">    # All installed packages (manifest overview)</span>
+<span class="sd">    get_docs()</span>
+
+<span class="sd">    # Single package — returns unwrapped result</span>
+<span class="sd">    get_docs(package=&quot;scitex-writer&quot;, format=&quot;json&quot;)</span>
+
+<span class="sd">    # Multiple packages — dict keyed by package name</span>
+<span class="sd">    get_docs(packages=[&quot;scitex-writer&quot;, &quot;scitex-stats&quot;], format=&quot;json&quot;)</span>
+
+<span class="sd">    # Specific page</span>
+<span class="sd">    get_docs(package=&quot;scitex-writer&quot;, format=&quot;html&quot;, page=&quot;api&quot;)</span>
+
+<span class="sd">    # Build docs from Sphinx source</span>
+<span class="sd">    build_docs(package=&quot;scitex-writer&quot;)</span>
+<span class="sd">    build_docs()  # all discovered packages</span>
+
+<span class="sd">    # Search across all packages</span>
+<span class="sd">    search_docs(query=&quot;save figure&quot;)</span>
+<span class="sd">    search_docs(query=&quot;statistics&quot;, packages=[&quot;scitex-stats&quot;])</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._core.discovery</span><span class="w"> </span><span class="kn">import</span> <span class="n">discover_packages</span><span class="p">,</span> <span class="n">get_package_root</span><span class="p">,</span> <span class="n">get_sphinx_source</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+
+<div class="viewcode-block" id="get_docs">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.get_docs">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_docs</span><span class="p">(</span>
+    <span class="n">package</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="nb">format</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">page</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">_discover_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">_root_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">_sphinx_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get documentation for one, several, or all installed SciTeX packages.</span>
+
+<span class="sd">    Resolution chain per package:</span>
+<span class="sd">        1. Pre-built _sphinx_html/ in installed package → fastest (production)</span>
+<span class="sd">        2. Sphinx _build/ available → use existing build</span>
+<span class="sd">        3. Neither → introspect from docstrings + signatures (always works)</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        package: Single package name (returns unwrapped result).</span>
+<span class="sd">        packages: List of package names (returns dict keyed by name).</span>
+<span class="sd">        format: Output format — None for manifest, &quot;json&quot; for structured,</span>
+<span class="sd">                &quot;html&quot; for path to HTML directory.</span>
+<span class="sd">        page: Specific page name (only with format=&quot;html&quot; or &quot;json&quot;).</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        - If package=: the doc result directly (unwrapped).</span>
+<span class="sd">        - If packages=: dict mapping package name → doc result.</span>
+<span class="sd">        - If neither: dict of all discovered packages → doc result.</span>
+
+<span class="sd">    Raises:</span>
+<span class="sd">        ValueError: If both package= and packages= are given.</span>
+<span class="sd">        LookupError: If a requested package is not found.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">package</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">packages</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="s2">&quot;Use either package= (singular) or packages= (plural), not both&quot;</span>
+        <span class="p">)</span>
+
+    <span class="n">discover</span> <span class="o">=</span> <span class="n">_discover_fn</span> <span class="k">if</span> <span class="n">_discover_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">discover_packages</span>
+
+    <span class="c1"># Single package — unwrap</span>
+    <span class="k">if</span> <span class="n">package</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_get_one</span><span class="p">(</span>
+            <span class="n">package</span><span class="p">,</span>
+            <span class="nb">format</span><span class="o">=</span><span class="nb">format</span><span class="p">,</span>
+            <span class="n">page</span><span class="o">=</span><span class="n">page</span><span class="p">,</span>
+            <span class="n">_discover_fn</span><span class="o">=</span><span class="n">discover</span><span class="p">,</span>
+            <span class="n">_root_fn</span><span class="o">=</span><span class="n">_root_fn</span><span class="p">,</span>
+            <span class="n">_sphinx_fn</span><span class="o">=</span><span class="n">_sphinx_fn</span><span class="p">,</span>
+        <span class="p">)</span>
+
+    <span class="c1"># Multiple or all packages</span>
+    <span class="k">if</span> <span class="n">packages</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">discovered</span> <span class="o">=</span> <span class="n">discover</span><span class="p">()</span>
+        <span class="n">packages</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">discovered</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+
+    <span class="n">results</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">pkg</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="p">]</span> <span class="o">=</span> <span class="n">_get_one</span><span class="p">(</span>
+                <span class="n">pkg</span><span class="p">,</span>
+                <span class="nb">format</span><span class="o">=</span><span class="nb">format</span><span class="p">,</span>
+                <span class="n">page</span><span class="o">=</span><span class="n">page</span><span class="p">,</span>
+                <span class="n">_discover_fn</span><span class="o">=</span><span class="n">discover</span><span class="p">,</span>
+                <span class="n">_root_fn</span><span class="o">=</span><span class="n">_root_fn</span><span class="p">,</span>
+                <span class="n">_sphinx_fn</span><span class="o">=</span><span class="n">_sphinx_fn</span><span class="p">,</span>
+            <span class="p">)</span>
+        <span class="k">except</span> <span class="ne">LookupError</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="s2">&quot;Package </span><span class="si">%s</span><span class="s2"> not found, skipping&quot;</span><span class="p">,</span> <span class="n">pkg</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<div class="viewcode-block" id="build_docs">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.build_docs">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">build_docs</span><span class="p">(</span>
+    <span class="n">package</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">output_dir</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">formats</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">_discover_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">_sphinx_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Build docs from Sphinx source for one or all packages.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        package: Single package name. None = build all discovered.</span>
+<span class="sd">        output_dir: Override output directory. Default: in-place (_build/).</span>
+<span class="sd">        formats: List of builders (&quot;html&quot;, &quot;json&quot;). Default: [&quot;html&quot;].</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Dict mapping package name → build result (path or error).</span>
+
+<span class="sd">    Raises:</span>
+<span class="sd">        LookupError: If package not found.</span>
+<span class="sd">        RuntimeError: If Sphinx is not installed.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">.._core.builder</span><span class="w"> </span><span class="kn">import</span> <span class="n">build_sphinx</span>
+
+    <span class="k">if</span> <span class="n">formats</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">formats</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;html&quot;</span><span class="p">]</span>
+
+    <span class="n">discover</span> <span class="o">=</span> <span class="n">_discover_fn</span> <span class="k">if</span> <span class="n">_discover_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">discover_packages</span>
+    <span class="n">sphinx</span> <span class="o">=</span> <span class="n">_sphinx_fn</span> <span class="k">if</span> <span class="n">_sphinx_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">get_sphinx_source</span>
+
+    <span class="n">discovered</span> <span class="o">=</span> <span class="n">discover</span><span class="p">()</span>
+
+    <span class="k">if</span> <span class="n">package</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">targets</span> <span class="o">=</span> <span class="p">{</span><span class="n">package</span><span class="p">:</span> <span class="n">discovered</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">package</span><span class="p">)}</span>
+        <span class="k">if</span> <span class="n">targets</span><span class="p">[</span><span class="n">package</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">LookupError</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Package &#39;</span><span class="si">{</span><span class="n">package</span><span class="si">}</span><span class="s2">&#39; not found in scitex_dev.docs entry points. &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;Available: </span><span class="si">{</span><span class="nb">list</span><span class="p">(</span><span class="n">discovered</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">targets</span> <span class="o">=</span> <span class="n">discovered</span>
+
+    <span class="n">results</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">pkg_name</span><span class="p">,</span> <span class="n">module_name</span> <span class="ow">in</span> <span class="n">targets</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">module_name</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="n">sphinx_src</span> <span class="o">=</span> <span class="n">sphinx</span><span class="p">(</span><span class="n">module_name</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">sphinx_src</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg_name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="s2">&quot;No Sphinx source found&quot;</span><span class="p">}</span>
+            <span class="k">continue</span>
+
+        <span class="n">pkg_results</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="k">for</span> <span class="n">fmt</span> <span class="ow">in</span> <span class="n">formats</span><span class="p">:</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">out</span> <span class="o">=</span> <span class="n">build_sphinx</span><span class="p">(</span>
+                    <span class="n">sphinx_src</span><span class="p">,</span>
+                    <span class="n">output_dir</span><span class="o">=</span><span class="p">(</span><span class="n">output_dir</span> <span class="o">/</span> <span class="n">fmt</span><span class="p">)</span> <span class="k">if</span> <span class="n">output_dir</span> <span class="k">else</span> <span class="kc">None</span><span class="p">,</span>
+                    <span class="n">builder</span><span class="o">=</span><span class="n">fmt</span><span class="p">,</span>
+                <span class="p">)</span>
+                <span class="n">pkg_results</span><span class="p">[</span><span class="n">fmt</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">out</span><span class="p">)</span> <span class="k">if</span> <span class="n">out</span> <span class="k">else</span> <span class="kc">None</span>
+            <span class="k">except</span> <span class="p">(</span><span class="ne">RuntimeError</span><span class="p">,</span> <span class="ne">FileNotFoundError</span><span class="p">)</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+                <span class="n">pkg_results</span><span class="p">[</span><span class="n">fmt</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+
+        <span class="n">results</span><span class="p">[</span><span class="n">pkg_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">pkg_results</span>
+
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<div class="viewcode-block" id="search_docs">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.search_docs">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">search_docs</span><span class="p">(</span>
+    <span class="n">query</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">package</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">max_results</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">10</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">_discover_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">_get_one_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Search documentation across one, several, or all SciTeX packages.</span>
+
+<span class="sd">    Simple keyword search over page titles and introspected content.</span>
+<span class="sd">    Stdlib only — no external search dependencies.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        query: Search query string (case-insensitive keyword matching).</span>
+<span class="sd">        package: Search within a single package.</span>
+<span class="sd">        packages: Search within specific packages.</span>
+<span class="sd">        max_results: Maximum number of results to return.</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        List of dicts with keys: package, name, title, score, match_type.</span>
+<span class="sd">        Sorted by relevance score (descending).</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">query_lower</span> <span class="o">=</span> <span class="n">query</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+    <span class="n">query_terms</span> <span class="o">=</span> <span class="n">query_lower</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
+    <span class="n">results</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="n">discover</span> <span class="o">=</span> <span class="n">_discover_fn</span> <span class="k">if</span> <span class="n">_discover_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">discover_packages</span>
+    <span class="n">get_one</span> <span class="o">=</span> <span class="n">_get_one_fn</span> <span class="k">if</span> <span class="n">_get_one_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">_get_one</span>
+
+    <span class="c1"># Determine which packages to search</span>
+    <span class="k">if</span> <span class="n">package</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">search_targets</span> <span class="o">=</span> <span class="p">{</span><span class="n">package</span><span class="p">:</span> <span class="kc">None</span><span class="p">}</span>
+    <span class="k">elif</span> <span class="n">packages</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">search_targets</span> <span class="o">=</span> <span class="p">{</span><span class="n">p</span><span class="p">:</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">}</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">search_targets</span> <span class="o">=</span> <span class="n">discover</span><span class="p">()</span>
+
+    <span class="k">for</span> <span class="n">pkg_name</span> <span class="ow">in</span> <span class="n">search_targets</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">manifest</span> <span class="o">=</span> <span class="n">get_one</span><span class="p">(</span><span class="n">pkg_name</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">LookupError</span><span class="p">:</span>
+            <span class="k">continue</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">manifest</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+            <span class="k">continue</span>
+
+        <span class="c1"># Search page titles from manifest</span>
+        <span class="k">for</span> <span class="n">page_entry</span> <span class="ow">in</span> <span class="n">manifest</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;pages&quot;</span><span class="p">,</span> <span class="p">[]):</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">page_entry</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+                <span class="n">name</span> <span class="o">=</span> <span class="n">page_entry</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;name&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+                <span class="n">title</span> <span class="o">=</span> <span class="n">page_entry</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;title&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">name</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">page_entry</span><span class="p">)</span>
+                <span class="n">title</span> <span class="o">=</span> <span class="n">name</span>
+
+            <span class="n">text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">title</span><span class="si">}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+            <span class="n">score</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="mi">1</span> <span class="k">for</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">query_terms</span> <span class="k">if</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">text</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">score</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="p">{</span>
+                        <span class="s2">&quot;package&quot;</span><span class="p">:</span> <span class="n">pkg_name</span><span class="p">,</span>
+                        <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span>
+                        <span class="s2">&quot;title&quot;</span><span class="p">:</span> <span class="n">title</span><span class="p">,</span>
+                        <span class="s2">&quot;score&quot;</span><span class="p">:</span> <span class="n">score</span><span class="p">,</span>
+                        <span class="s2">&quot;match_type&quot;</span><span class="p">:</span> <span class="s2">&quot;page_title&quot;</span><span class="p">,</span>
+                    <span class="p">}</span>
+                <span class="p">)</span>
+
+        <span class="c1"># Search introspected module/function names</span>
+        <span class="k">for</span> <span class="n">member_name</span><span class="p">,</span> <span class="n">info</span> <span class="ow">in</span> <span class="n">manifest</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;modules&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="n">text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">member_name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;description&#39;</span><span class="p">,</span><span class="w"> </span><span class="s1">&#39;&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+            <span class="n">score</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="mi">1</span> <span class="k">for</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">query_terms</span> <span class="k">if</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">text</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">score</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="p">{</span>
+                        <span class="s2">&quot;package&quot;</span><span class="p">:</span> <span class="n">pkg_name</span><span class="p">,</span>
+                        <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">member_name</span><span class="p">,</span>
+                        <span class="s2">&quot;title&quot;</span><span class="p">:</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;description&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)[:</span><span class="mi">80</span><span class="p">],</span>
+                        <span class="s2">&quot;score&quot;</span><span class="p">:</span> <span class="n">score</span><span class="p">,</span>
+                        <span class="s2">&quot;match_type&quot;</span><span class="p">:</span> <span class="s2">&quot;api_member&quot;</span><span class="p">,</span>
+                    <span class="p">}</span>
+                <span class="p">)</span>
+
+        <span class="c1"># Search package description</span>
+        <span class="n">desc</span> <span class="o">=</span> <span class="n">manifest</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;description&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+        <span class="n">score</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="mi">1</span> <span class="k">for</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">query_terms</span> <span class="k">if</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">desc</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">score</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span>
+                    <span class="s2">&quot;package&quot;</span><span class="p">:</span> <span class="n">pkg_name</span><span class="p">,</span>
+                    <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">pkg_name</span><span class="p">,</span>
+                    <span class="s2">&quot;title&quot;</span><span class="p">:</span> <span class="n">manifest</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;description&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)[:</span><span class="mi">80</span><span class="p">],</span>
+                    <span class="s2">&quot;score&quot;</span><span class="p">:</span> <span class="n">score</span><span class="p">,</span>
+                    <span class="s2">&quot;match_type&quot;</span><span class="p">:</span> <span class="s2">&quot;package&quot;</span><span class="p">,</span>
+                <span class="p">}</span>
+            <span class="p">)</span>
+
+    <span class="c1"># Sort by score descending, then by name</span>
+    <span class="n">results</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">r</span><span class="p">:</span> <span class="p">(</span><span class="o">-</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;score&quot;</span><span class="p">],</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;name&quot;</span><span class="p">]))</span>
+    <span class="k">return</span> <span class="n">results</span><span class="p">[:</span><span class="n">max_results</span><span class="p">]</span></div>
+
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Internal helpers</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_one</span><span class="p">(</span>
+    <span class="n">package</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="nb">format</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">page</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">_discover_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">_root_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">_sphinx_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get docs for a single package, following the resolution chain.&quot;&quot;&quot;</span>
+    <span class="n">discover</span> <span class="o">=</span> <span class="n">_discover_fn</span> <span class="k">if</span> <span class="n">_discover_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">discover_packages</span>
+    <span class="n">root_lookup</span> <span class="o">=</span> <span class="n">_root_fn</span> <span class="k">if</span> <span class="n">_root_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">get_package_root</span>
+    <span class="n">sphinx_lookup</span> <span class="o">=</span> <span class="n">_sphinx_fn</span> <span class="k">if</span> <span class="n">_sphinx_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">get_sphinx_source</span>
+
+    <span class="n">discovered</span> <span class="o">=</span> <span class="n">discover</span><span class="p">()</span>
+    <span class="n">module_name</span> <span class="o">=</span> <span class="n">discovered</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">package</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">module_name</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">LookupError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Package &#39;</span><span class="si">{</span><span class="n">package</span><span class="si">}</span><span class="s2">&#39; not found. Available: </span><span class="si">{</span><span class="nb">list</span><span class="p">(</span><span class="n">discovered</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+
+    <span class="c1"># 1. Try pre-built _sphinx_html/</span>
+    <span class="n">pkg_root</span> <span class="o">=</span> <span class="n">root_lookup</span><span class="p">(</span><span class="n">module_name</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">pkg_root</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">docs_dir</span> <span class="o">=</span> <span class="n">pkg_root</span> <span class="o">/</span> <span class="s2">&quot;_sphinx_html&quot;</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">_resolve_from_built</span><span class="p">(</span><span class="n">docs_dir</span><span class="p">,</span> <span class="nb">format</span><span class="o">=</span><span class="nb">format</span><span class="p">,</span> <span class="n">page</span><span class="o">=</span><span class="n">page</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">_enrich_manifest</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">package</span><span class="p">)</span>
+
+    <span class="c1"># 2. Try Sphinx _build/</span>
+    <span class="n">sphinx_src</span> <span class="o">=</span> <span class="n">sphinx_lookup</span><span class="p">(</span><span class="n">module_name</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">sphinx_src</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">build_dir</span> <span class="o">=</span> <span class="n">sphinx_src</span> <span class="o">/</span> <span class="s2">&quot;_build&quot;</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">_resolve_from_built</span><span class="p">(</span>
+            <span class="n">build_dir</span> <span class="o">/</span> <span class="s2">&quot;html&quot;</span><span class="p">,</span> <span class="nb">format</span><span class="o">=</span><span class="nb">format</span><span class="p">,</span> <span class="n">page</span><span class="o">=</span><span class="n">page</span><span class="p">,</span> <span class="n">json_dir</span><span class="o">=</span><span class="n">build_dir</span> <span class="o">/</span> <span class="s2">&quot;json&quot;</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">_enrich_manifest</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">package</span><span class="p">)</span>
+
+    <span class="c1"># 3. Fallback: introspect</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">.._core.introspect</span><span class="w"> </span><span class="kn">import</span> <span class="n">introspect_package</span>
+
+    <span class="k">return</span> <span class="n">introspect_package</span><span class="p">(</span><span class="n">module_name</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_resolve_from_built</span><span class="p">(</span>
+    <span class="n">html_dir</span><span class="p">:</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="nb">format</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">page</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">json_dir</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Try to resolve docs from a built docs directory.</span>
+
+<span class="sd">    Returns None if the directory doesn&#39;t exist or doesn&#39;t have the requested content.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">html_dir</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="c1"># If page requested but no format, default to html</span>
+    <span class="k">if</span> <span class="n">page</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">format</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="nb">format</span> <span class="o">=</span> <span class="s2">&quot;html&quot;</span>
+
+    <span class="c1"># No format requested → return manifest</span>
+    <span class="k">if</span> <span class="nb">format</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">.._core.manifest</span><span class="w"> </span><span class="kn">import</span> <span class="n">read_manifest</span><span class="p">,</span> <span class="n">generate_manifest</span>
+
+        <span class="n">manifest</span> <span class="o">=</span> <span class="n">read_manifest</span><span class="p">(</span><span class="n">html_dir</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">manifest</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">manifest</span>
+        <span class="c1"># Auto-generate manifest from directory contents</span>
+        <span class="k">return</span> <span class="n">generate_manifest</span><span class="p">(</span>
+            <span class="n">package</span><span class="o">=</span><span class="n">html_dir</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">name</span><span class="p">,</span>
+            <span class="n">docs_dir</span><span class="o">=</span><span class="n">html_dir</span><span class="p">,</span>
+        <span class="p">)</span>
+
+    <span class="c1"># HTML format → return path</span>
+    <span class="k">if</span> <span class="nb">format</span> <span class="o">==</span> <span class="s2">&quot;html&quot;</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">page</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">page_path</span> <span class="o">=</span> <span class="n">html_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">page</span><span class="si">}</span><span class="s2">.html&quot;</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">page_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+                <span class="n">page_path</span> <span class="o">=</span> <span class="n">html_dir</span> <span class="o">/</span> <span class="n">page</span>
+            <span class="k">if</span> <span class="n">page_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+                <span class="k">return</span> <span class="n">page_path</span>
+            <span class="k">return</span> <span class="kc">None</span>
+        <span class="k">if</span> <span class="p">(</span><span class="n">html_dir</span> <span class="o">/</span> <span class="s2">&quot;index.html&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="k">return</span> <span class="n">html_dir</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="c1"># JSON format → try Sphinx JSON builder output or read HTML</span>
+    <span class="k">if</span> <span class="nb">format</span> <span class="o">==</span> <span class="s2">&quot;json&quot;</span><span class="p">:</span>
+        <span class="n">target_dir</span> <span class="o">=</span> <span class="n">json_dir</span> <span class="k">if</span> <span class="n">json_dir</span> <span class="ow">and</span> <span class="n">json_dir</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="k">else</span> <span class="n">html_dir</span>
+        <span class="k">if</span> <span class="n">page</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">json_path</span> <span class="o">=</span> <span class="n">target_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">page</span><span class="si">}</span><span class="s2">.fjson&quot;</span>
+            <span class="k">if</span> <span class="n">json_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+                <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">json_path</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s2">&quot;utf-8&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+                    <span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+            <span class="c1"># Try .json extension</span>
+            <span class="n">json_path</span> <span class="o">=</span> <span class="n">target_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">page</span><span class="si">}</span><span class="s2">.json&quot;</span>
+            <span class="k">if</span> <span class="n">json_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+                <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">json_path</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s2">&quot;utf-8&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+                    <span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+            <span class="k">return</span> <span class="kc">None</span>
+        <span class="c1"># Return list of available pages</span>
+        <span class="n">pages</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">ext</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;*.fjson&quot;</span><span class="p">,</span> <span class="s2">&quot;*.json&quot;</span><span class="p">):</span>
+            <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">target_dir</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">ext</span><span class="p">)):</span>
+                <span class="n">pages</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">p</span><span class="o">.</span><span class="n">stem</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">pages</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;pages&quot;</span><span class="p">:</span> <span class="n">pages</span><span class="p">}</span>
+        <span class="c1"># Fall back to listing HTML pages</span>
+        <span class="n">html_pages</span> <span class="o">=</span> <span class="p">[</span><span class="n">p</span><span class="o">.</span><span class="n">stem</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">html_dir</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s2">&quot;*.html&quot;</span><span class="p">))]</span>
+        <span class="k">if</span> <span class="n">html_pages</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;pages&quot;</span><span class="p">:</span> <span class="n">html_pages</span><span class="p">,</span> <span class="s2">&quot;note&quot;</span><span class="p">:</span> <span class="s2">&quot;JSON not built, listing HTML pages&quot;</span><span class="p">}</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Unknown format: </span><span class="si">{</span><span class="nb">format</span><span class="si">!r}</span><span class="s2">. Use None, &#39;html&#39;, or &#39;json&#39;.&quot;</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_enrich_manifest</span><span class="p">(</span><span class="n">result</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span> <span class="n">package</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Any</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Fill in version/description from importlib.metadata if missing.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">result</span>
+    <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;version&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;description&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">result</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">importlib.metadata</span><span class="w"> </span><span class="kn">import</span> <span class="n">metadata</span>
+
+        <span class="n">meta</span> <span class="o">=</span> <span class="n">metadata</span><span class="p">(</span><span class="n">package</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;version&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;version&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">meta</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;Version&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;description&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">summary</span> <span class="o">=</span> <span class="n">meta</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;Summary&quot;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">summary</span><span class="p">:</span>
+                <span class="n">result</span><span class="p">[</span><span class="s2">&quot;description&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">summary</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+    <span class="k">return</span> <span class="n">result</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_docs/search.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_docs/search.html
new file mode 100644
index 000000000..fb4d102b8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_dev/_docs/search.html
@@ -0,0 +1,1145 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_dev._docs.search &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#path-management">Path Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/dsp.html#available-functions">Available Functions</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._docs.search</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._docs.search</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="sd">&quot;&quot;&quot;Unified search across the SciTeX ecosystem.</span>
+
+<span class="sd">Searches Python APIs, CLI commands, MCP tools, and documentation pages</span>
+<span class="sd">across all installed scitex packages.</span>
+
+<span class="sd">Query syntax (Google-like):</span>
+<span class="sd">    search(&quot;save figure&quot;)           # match any term</span>
+<span class="sd">    search(&#39;&quot;save figure&quot;&#39;)         # exact phrase match</span>
+<span class="sd">    search(&quot;stats -deprecated&quot;)     # exclude results with &quot;deprecated&quot;</span>
+<span class="sd">    search(&quot;+ttest statistics&quot;)     # &quot;ttest&quot; required, &quot;statistics&quot; optional boost</span>
+
+<span class="sd">Usage:</span>
+<span class="sd">    from scitex_dev import search</span>
+
+<span class="sd">    search(&quot;save figure&quot;)                      # search everything</span>
+<span class="sd">    search(&quot;ttest&quot;, scope=&quot;api&quot;)               # Python API only</span>
+<span class="sd">    search(&quot;docs&quot;, scope=&quot;cli&quot;)                # CLI subcommands only</span>
+<span class="sd">    search(&quot;stats -internal&quot;, scope=&quot;mcp&quot;)     # MCP tools, excluding &quot;internal&quot;</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">difflib</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span><span class="p">,</span> <span class="n">field</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Literal</span><span class="p">,</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._core.discovery</span><span class="w"> </span><span class="kn">import</span> <span class="n">discover_packages</span><span class="p">,</span> <span class="n">get_package_root</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+<span class="n">Scope</span> <span class="o">=</span> <span class="n">Literal</span><span class="p">[</span><span class="s2">&quot;all&quot;</span><span class="p">,</span> <span class="s2">&quot;api&quot;</span><span class="p">,</span> <span class="s2">&quot;cli&quot;</span><span class="p">,</span> <span class="s2">&quot;mcp&quot;</span><span class="p">,</span> <span class="s2">&quot;docs&quot;</span><span class="p">]</span>
+
+<span class="c1"># Fuzzy match threshold (0.0–1.0). Lower = more permissive.</span>
+<span class="n">_FUZZY_THRESHOLD</span> <span class="o">=</span> <span class="mf">0.6</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Query parsing</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">ParsedQuery</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parsed search query with Google-like operators.&quot;&quot;&quot;</span>
+
+    <span class="n">required</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># +term</span>
+    <span class="n">optional</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># plain term</span>
+    <span class="n">excluded</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># -term</span>
+    <span class="n">phrases</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># &quot;exact phrase&quot;</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">all_positive</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;All terms that should match (required + optional).&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">required</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">optional</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">is_empty</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+        <span class="k">return</span> <span class="ow">not</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">required</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">optional</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">phrases</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">parse_query</span><span class="p">(</span><span class="n">query</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">ParsedQuery</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parse a Google-like query string.</span>
+
+<span class="sd">    Supports:</span>
+<span class="sd">        word         → optional term (boosts score)</span>
+<span class="sd">        +word        → required term (must match)</span>
+<span class="sd">        -word        → excluded term (must NOT match)</span>
+<span class="sd">        &quot;phrase&quot;     → exact phrase match</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">parsed</span> <span class="o">=</span> <span class="n">ParsedQuery</span><span class="p">()</span>
+
+    <span class="c1"># Extract quoted phrases first</span>
+    <span class="k">for</span> <span class="n">match</span> <span class="ow">in</span> <span class="n">re</span><span class="o">.</span><span class="n">finditer</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;&quot;([^&quot;]+)&quot;&#39;</span><span class="p">,</span> <span class="n">query</span><span class="p">):</span>
+        <span class="n">parsed</span><span class="o">.</span><span class="n">phrases</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span><span class="o">.</span><span class="n">lower</span><span class="p">())</span>
+
+    <span class="c1"># Remove quoted parts from remaining query</span>
+    <span class="n">remaining</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;&quot;[^&quot;]*&quot;&#39;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">query</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+
+    <span class="k">for</span> <span class="n">token</span> <span class="ow">in</span> <span class="n">remaining</span><span class="o">.</span><span class="n">split</span><span class="p">():</span>
+        <span class="n">token_lower</span> <span class="o">=</span> <span class="n">token</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">token</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;+&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">token</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="n">parsed</span><span class="o">.</span><span class="n">required</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">token_lower</span><span class="p">[</span><span class="mi">1</span><span class="p">:])</span>
+        <span class="k">elif</span> <span class="n">token</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">token</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="n">parsed</span><span class="o">.</span><span class="n">excluded</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">token_lower</span><span class="p">[</span><span class="mi">1</span><span class="p">:])</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">parsed</span><span class="o">.</span><span class="n">optional</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">token_lower</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">parsed</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Scoring</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">score_text</span><span class="p">(</span><span class="n">pq</span><span class="p">:</span> <span class="n">ParsedQuery</span><span class="p">,</span> <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">fuzzy</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">float</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Score text against a parsed query.</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Score &gt;= 0. Returns -1 if excluded term found or required term missing.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">text_lower</span> <span class="o">=</span> <span class="n">text</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+
+    <span class="c1"># Check exclusions first</span>
+    <span class="k">for</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">pq</span><span class="o">.</span><span class="n">excluded</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">text_lower</span><span class="p">:</span>
+            <span class="k">return</span> <span class="o">-</span><span class="mi">1</span>
+
+    <span class="c1"># Check required terms</span>
+    <span class="k">for</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">pq</span><span class="o">.</span><span class="n">required</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">_term_matches</span><span class="p">(</span><span class="n">term</span><span class="p">,</span> <span class="n">text_lower</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">):</span>
+            <span class="k">return</span> <span class="o">-</span><span class="mi">1</span>
+
+    <span class="n">score</span> <span class="o">=</span> <span class="mf">0.0</span>
+
+    <span class="c1"># Score required terms (they matched, give credit)</span>
+    <span class="k">for</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">pq</span><span class="o">.</span><span class="n">required</span><span class="p">:</span>
+        <span class="n">score</span> <span class="o">+=</span> <span class="mf">2.0</span>  <span class="c1"># Required terms get double weight</span>
+
+    <span class="c1"># Score optional terms</span>
+    <span class="k">for</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">pq</span><span class="o">.</span><span class="n">optional</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">text_lower</span><span class="p">:</span>
+            <span class="n">score</span> <span class="o">+=</span> <span class="mf">1.0</span>
+        <span class="k">elif</span> <span class="n">fuzzy</span> <span class="ow">and</span> <span class="n">_fuzzy_match</span><span class="p">(</span><span class="n">term</span><span class="p">,</span> <span class="n">text_lower</span><span class="p">):</span>
+            <span class="n">score</span> <span class="o">+=</span> <span class="mf">0.5</span>  <span class="c1"># Fuzzy matches get half weight</span>
+
+    <span class="c1"># Score exact phrases</span>
+    <span class="k">for</span> <span class="n">phrase</span> <span class="ow">in</span> <span class="n">pq</span><span class="o">.</span><span class="n">phrases</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">phrase</span> <span class="ow">in</span> <span class="n">text_lower</span><span class="p">:</span>
+            <span class="n">score</span> <span class="o">+=</span> <span class="mf">3.0</span>  <span class="c1"># Phrase matches get triple weight</span>
+
+    <span class="k">return</span> <span class="n">score</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_term_matches</span><span class="p">(</span><span class="n">term</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">fuzzy</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if a term matches text (exact or fuzzy).&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">term</span> <span class="ow">in</span> <span class="n">text</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">True</span>
+    <span class="k">if</span> <span class="n">fuzzy</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_fuzzy_match</span><span class="p">(</span><span class="n">term</span><span class="p">,</span> <span class="n">text</span><span class="p">)</span>
+    <span class="k">return</span> <span class="kc">False</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_fuzzy_match</span><span class="p">(</span><span class="n">term</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if term fuzzy-matches any word in text.&quot;&quot;&quot;</span>
+    <span class="n">words</span> <span class="o">=</span> <span class="n">text</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">word</span> <span class="ow">in</span> <span class="n">words</span><span class="p">:</span>
+        <span class="c1"># Strip non-alphanumeric for cleaner matching</span>
+        <span class="n">clean</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;[^a-z0-9_]&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">word</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">clean</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="n">ratio</span> <span class="o">=</span> <span class="n">difflib</span><span class="o">.</span><span class="n">SequenceMatcher</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">term</span><span class="p">,</span> <span class="n">clean</span><span class="p">)</span><span class="o">.</span><span class="n">ratio</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">ratio</span> <span class="o">&gt;=</span> <span class="n">_FUZZY_THRESHOLD</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">True</span>
+    <span class="k">return</span> <span class="kc">False</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Main search function</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<div class="viewcode-block" id="search">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.search">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">search</span><span class="p">(</span>
+    <span class="n">query</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">scope</span><span class="p">:</span> <span class="n">Scope</span> <span class="o">=</span> <span class="s2">&quot;all&quot;</span><span class="p">,</span>
+    <span class="n">package</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">max_results</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">10</span><span class="p">,</span>
+    <span class="n">fuzzy</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Search across the SciTeX ecosystem.</span>
+
+<span class="sd">    Query syntax:</span>
+<span class="sd">        &quot;save figure&quot;     → match any term</span>
+<span class="sd">        &#39;&quot;exact phrase&quot;&#39;  → match exact phrase</span>
+<span class="sd">        &quot;+required term&quot;  → term must appear</span>
+<span class="sd">        &quot;-excluded&quot;       → results with this term are removed</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        query: Search query (supports +required, -excluded, &quot;phrases&quot;).</span>
+<span class="sd">        scope: What to search — &quot;all&quot;, &quot;api&quot;, &quot;cli&quot;, &quot;mcp&quot;, or &quot;docs&quot;.</span>
+<span class="sd">        package: Limit to a single package.</span>
+<span class="sd">        packages: Limit to specific packages.</span>
+<span class="sd">        max_results: Maximum results to return.</span>
+<span class="sd">        fuzzy: Enable fuzzy matching via difflib (default True).</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        List of dicts with: package, name, title, score, scope, match_type.</span>
+<span class="sd">        Sorted by relevance (score descending).</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">pq</span> <span class="o">=</span> <span class="n">parse_query</span><span class="p">(</span><span class="n">query</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">pq</span><span class="o">.</span><span class="n">is_empty</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+
+    <span class="c1"># Determine target packages</span>
+    <span class="n">targets</span> <span class="o">=</span> <span class="n">_resolve_targets</span><span class="p">(</span><span class="n">package</span><span class="p">,</span> <span class="n">packages</span><span class="p">)</span>
+    <span class="n">results</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="c1"># Dispatch to scope-specific searchers</span>
+    <span class="n">searchers</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;docs&quot;</span><span class="p">:</span> <span class="n">_search_docs</span><span class="p">,</span>
+        <span class="s2">&quot;api&quot;</span><span class="p">:</span> <span class="n">_search_api</span><span class="p">,</span>
+        <span class="s2">&quot;cli&quot;</span><span class="p">:</span> <span class="n">_search_cli</span><span class="p">,</span>
+        <span class="s2">&quot;mcp&quot;</span><span class="p">:</span> <span class="n">_search_mcp</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="k">if</span> <span class="n">scope</span> <span class="o">==</span> <span class="s2">&quot;all&quot;</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">searcher</span> <span class="ow">in</span> <span class="n">searchers</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
+            <span class="n">results</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">searcher</span><span class="p">(</span><span class="n">pq</span><span class="p">,</span> <span class="n">targets</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">))</span>
+    <span class="k">elif</span> <span class="n">scope</span> <span class="ow">in</span> <span class="n">searchers</span><span class="p">:</span>
+        <span class="n">results</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">searchers</span><span class="p">[</span><span class="n">scope</span><span class="p">](</span><span class="n">pq</span><span class="p">,</span> <span class="n">targets</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">))</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Unknown scope: </span><span class="si">{</span><span class="n">scope</span><span class="si">!r}</span><span class="s2">. Use &#39;all&#39;, &#39;api&#39;, &#39;cli&#39;, &#39;mcp&#39;, or &#39;docs&#39;.&quot;</span>
+        <span class="p">)</span>
+
+    <span class="c1"># Deduplicate by (package, name, scope)</span>
+    <span class="n">seen</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+    <span class="n">unique</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">results</span><span class="p">:</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="p">(</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;package&quot;</span><span class="p">],</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;name&quot;</span><span class="p">],</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;scope&quot;</span><span class="p">])</span>
+        <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">seen</span><span class="p">:</span>
+            <span class="n">seen</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+            <span class="n">unique</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">r</span><span class="p">)</span>
+
+    <span class="n">unique</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">r</span><span class="p">:</span> <span class="p">(</span><span class="o">-</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;score&quot;</span><span class="p">],</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;name&quot;</span><span class="p">]))</span>
+    <span class="k">return</span> <span class="n">unique</span><span class="p">[:</span><span class="n">max_results</span><span class="p">]</span></div>
+
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Helpers</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_resolve_targets</span><span class="p">(</span>
+    <span class="n">package</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">],</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resolve which packages to search.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">package</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">discovered</span> <span class="o">=</span> <span class="n">discover_packages</span><span class="p">()</span>
+        <span class="k">return</span> <span class="p">{</span><span class="n">package</span><span class="p">:</span> <span class="n">discovered</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">package</span><span class="p">)}</span>
+    <span class="k">if</span> <span class="n">packages</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">discovered</span> <span class="o">=</span> <span class="n">discover_packages</span><span class="p">()</span>
+        <span class="k">return</span> <span class="p">{</span><span class="n">p</span><span class="p">:</span> <span class="n">discovered</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">p</span><span class="p">)</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">}</span>
+    <span class="k">return</span> <span class="n">discover_packages</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_make_result</span><span class="p">(</span>
+    <span class="n">package</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">title</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">score</span><span class="p">:</span> <span class="nb">float</span><span class="p">,</span>
+    <span class="n">scope</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">match_type</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;package&quot;</span><span class="p">:</span> <span class="n">package</span><span class="p">,</span>
+        <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span>
+        <span class="s2">&quot;title&quot;</span><span class="p">:</span> <span class="n">title</span><span class="p">,</span>
+        <span class="s2">&quot;score&quot;</span><span class="p">:</span> <span class="n">score</span><span class="p">,</span>
+        <span class="s2">&quot;scope&quot;</span><span class="p">:</span> <span class="n">scope</span><span class="p">,</span>
+        <span class="s2">&quot;match_type&quot;</span><span class="p">:</span> <span class="n">match_type</span><span class="p">,</span>
+    <span class="p">}</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Scope-specific searchers</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_search_docs</span><span class="p">(</span>
+    <span class="n">pq</span><span class="p">:</span> <span class="n">ParsedQuery</span><span class="p">,</span>
+    <span class="n">targets</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span>
+    <span class="n">fuzzy</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Search documentation pages.&quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">.docs</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_docs</span>
+
+    <span class="n">results</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">pkg_name</span> <span class="ow">in</span> <span class="n">targets</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">manifest</span> <span class="o">=</span> <span class="n">get_docs</span><span class="p">(</span><span class="n">package</span><span class="o">=</span><span class="n">pkg_name</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">LookupError</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">manifest</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+            <span class="k">continue</span>
+
+        <span class="k">for</span> <span class="n">page_entry</span> <span class="ow">in</span> <span class="n">manifest</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;pages&quot;</span><span class="p">,</span> <span class="p">[]):</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">page_entry</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+                <span class="n">name</span> <span class="o">=</span> <span class="n">page_entry</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;name&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+                <span class="n">title</span> <span class="o">=</span> <span class="n">page_entry</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;title&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">name</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">page_entry</span><span class="p">)</span>
+                <span class="n">title</span> <span class="o">=</span> <span class="n">name</span>
+
+            <span class="n">text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">title</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">score_text</span><span class="p">(</span><span class="n">pq</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">s</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="n">_make_result</span><span class="p">(</span><span class="n">pkg_name</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">title</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="s2">&quot;docs&quot;</span><span class="p">,</span> <span class="s2">&quot;page_title&quot;</span><span class="p">)</span>
+                <span class="p">)</span>
+
+        <span class="c1"># Package description</span>
+        <span class="n">desc</span> <span class="o">=</span> <span class="n">manifest</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;description&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">desc</span><span class="p">:</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">score_text</span><span class="p">(</span><span class="n">pq</span><span class="p">,</span> <span class="n">desc</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">s</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="n">_make_result</span><span class="p">(</span><span class="n">pkg_name</span><span class="p">,</span> <span class="n">pkg_name</span><span class="p">,</span> <span class="n">desc</span><span class="p">[:</span><span class="mi">80</span><span class="p">],</span> <span class="n">s</span><span class="p">,</span> <span class="s2">&quot;docs&quot;</span><span class="p">,</span> <span class="s2">&quot;package&quot;</span><span class="p">)</span>
+                <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">results</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_search_api</span><span class="p">(</span>
+    <span class="n">pq</span><span class="p">:</span> <span class="n">ParsedQuery</span><span class="p">,</span>
+    <span class="n">targets</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span>
+    <span class="n">fuzzy</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Search Python API (public functions, classes, methods).&quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">.._core.introspect</span><span class="w"> </span><span class="kn">import</span> <span class="n">introspect_package</span>
+
+    <span class="n">results</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">pkg_name</span><span class="p">,</span> <span class="n">module_name</span> <span class="ow">in</span> <span class="n">targets</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">module_name</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">info</span> <span class="o">=</span> <span class="n">introspect_package</span><span class="p">(</span><span class="n">module_name</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="k">if</span> <span class="n">info</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+
+        <span class="k">for</span> <span class="n">member_name</span><span class="p">,</span> <span class="n">member_info</span> <span class="ow">in</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;modules&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="n">text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">member_name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">member_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;description&#39;</span><span class="p">,</span><span class="w"> </span><span class="s1">&#39;&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">sig</span> <span class="o">=</span> <span class="n">member_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;signature&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">sig</span><span class="p">:</span>
+                <span class="n">text</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot; </span><span class="si">{</span><span class="n">sig</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">score_text</span><span class="p">(</span><span class="n">pq</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">s</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="n">_make_result</span><span class="p">(</span>
+                        <span class="n">pkg_name</span><span class="p">,</span>
+                        <span class="n">member_name</span><span class="p">,</span>
+                        <span class="n">member_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;description&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)[:</span><span class="mi">80</span><span class="p">],</span>
+                        <span class="n">s</span><span class="p">,</span>
+                        <span class="s2">&quot;api&quot;</span><span class="p">,</span>
+                        <span class="n">member_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">,</span> <span class="s2">&quot;function&quot;</span><span class="p">),</span>
+                    <span class="p">)</span>
+                <span class="p">)</span>
+
+            <span class="c1"># Search methods within classes</span>
+            <span class="k">if</span> <span class="n">member_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;class&quot;</span><span class="p">:</span>
+                <span class="k">for</span> <span class="n">method_name</span><span class="p">,</span> <span class="n">method_info</span> <span class="ow">in</span> <span class="n">member_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;methods&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+                    <span class="n">text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">member_name</span><span class="si">}</span><span class="s2">.</span><span class="si">{</span><span class="n">method_name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">method_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;description&#39;</span><span class="p">,</span><span class="w"> </span><span class="s1">&#39;&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+                    <span class="n">s</span> <span class="o">=</span> <span class="n">score_text</span><span class="p">(</span><span class="n">pq</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">)</span>
+                    <span class="k">if</span> <span class="n">s</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+                        <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                            <span class="n">_make_result</span><span class="p">(</span>
+                                <span class="n">pkg_name</span><span class="p">,</span>
+                                <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">member_name</span><span class="si">}</span><span class="s2">.</span><span class="si">{</span><span class="n">method_name</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+                                <span class="n">method_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;description&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)[:</span><span class="mi">80</span><span class="p">],</span>
+                                <span class="n">s</span><span class="p">,</span>
+                                <span class="s2">&quot;api&quot;</span><span class="p">,</span>
+                                <span class="s2">&quot;method&quot;</span><span class="p">,</span>
+                            <span class="p">)</span>
+                        <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">results</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_search_cli</span><span class="p">(</span>
+    <span class="n">pq</span><span class="p">:</span> <span class="n">ParsedQuery</span><span class="p">,</span>
+    <span class="n">targets</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span>
+    <span class="n">fuzzy</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Search CLI subcommands via console_scripts entry points.&quot;&quot;&quot;</span>
+    <span class="n">results</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">importlib.metadata</span><span class="w"> </span><span class="kn">import</span> <span class="n">entry_points</span>
+
+        <span class="n">eps</span> <span class="o">=</span> <span class="n">entry_points</span><span class="p">(</span><span class="n">group</span><span class="o">=</span><span class="s2">&quot;console_scripts&quot;</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">ep</span> <span class="ow">in</span> <span class="n">eps</span><span class="p">:</span>
+            <span class="n">pkg_match</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="k">for</span> <span class="n">pkg_name</span> <span class="ow">in</span> <span class="n">targets</span><span class="p">:</span>
+                <span class="n">normalized</span> <span class="o">=</span> <span class="n">pkg_name</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">normalized</span> <span class="ow">in</span> <span class="n">ep</span><span class="o">.</span><span class="n">value</span> <span class="ow">or</span> <span class="n">ep</span><span class="o">.</span><span class="n">name</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">pkg_name</span><span class="p">):</span>
+                    <span class="n">pkg_match</span> <span class="o">=</span> <span class="n">pkg_name</span>
+                    <span class="k">break</span>
+
+            <span class="k">if</span> <span class="n">pkg_match</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="k">continue</span>
+
+            <span class="n">text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">ep</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">ep</span><span class="o">.</span><span class="n">value</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="n">score_text</span><span class="p">(</span><span class="n">pq</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">s</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="n">_make_result</span><span class="p">(</span>
+                        <span class="n">pkg_match</span><span class="p">,</span>
+                        <span class="n">ep</span><span class="o">.</span><span class="n">name</span><span class="p">,</span>
+                        <span class="sa">f</span><span class="s2">&quot;CLI: </span><span class="si">{</span><span class="n">ep</span><span class="o">.</span><span class="n">value</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+                        <span class="n">s</span><span class="p">,</span>
+                        <span class="s2">&quot;cli&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;console_script&quot;</span><span class="p">,</span>
+                    <span class="p">)</span>
+                <span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="s2">&quot;Failed to search CLI entry points&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">results</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_search_mcp</span><span class="p">(</span>
+    <span class="n">pq</span><span class="p">:</span> <span class="n">ParsedQuery</span><span class="p">,</span>
+    <span class="n">targets</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span>
+    <span class="n">fuzzy</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Search MCP tool names and descriptions.&quot;&quot;&quot;</span>
+    <span class="n">results</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">for</span> <span class="n">pkg_name</span><span class="p">,</span> <span class="n">module_name</span> <span class="ow">in</span> <span class="n">targets</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">module_name</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+
+        <span class="n">pkg_root</span> <span class="o">=</span> <span class="n">get_package_root</span><span class="p">(</span><span class="n">module_name</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">pkg_root</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+
+        <span class="n">mcp_candidates</span> <span class="o">=</span> <span class="p">[</span>
+            <span class="n">pkg_root</span> <span class="o">/</span> <span class="s2">&quot;_mcp_tools&quot;</span><span class="p">,</span>
+            <span class="n">pkg_root</span> <span class="o">/</span> <span class="s2">&quot;mcp&quot;</span><span class="p">,</span>
+            <span class="n">pkg_root</span> <span class="o">/</span> <span class="s2">&quot;_mcp&quot;</span><span class="p">,</span>
+        <span class="p">]</span>
+
+        <span class="k">for</span> <span class="n">mcp_dir</span> <span class="ow">in</span> <span class="n">mcp_candidates</span><span class="p">:</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">mcp_dir</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+                <span class="k">continue</span>
+            <span class="k">for</span> <span class="n">py_file</span> <span class="ow">in</span> <span class="n">mcp_dir</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s2">&quot;*.py&quot;</span><span class="p">):</span>
+                <span class="k">if</span> <span class="n">py_file</span><span class="o">.</span><span class="n">name</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;_&quot;</span><span class="p">):</span>
+                    <span class="k">continue</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="n">content</span> <span class="o">=</span> <span class="n">py_file</span><span class="o">.</span><span class="n">read_text</span><span class="p">(</span><span class="n">encoding</span><span class="o">=</span><span class="s2">&quot;utf-8&quot;</span><span class="p">)</span>
+                <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
+                    <span class="k">continue</span>
+
+                <span class="k">for</span> <span class="n">match</span> <span class="ow">in</span> <span class="n">re</span><span class="o">.</span><span class="n">finditer</span><span class="p">(</span>
+                    <span class="sa">r</span><span class="s1">&#39;(?:async\s+)?def\s+(\w+)\s*\([^)]*\)\s*(?:-&gt;.*?)?:\s*\n\s*&quot;&quot;&quot;([^&quot;]*)&#39;</span><span class="p">,</span>
+                    <span class="n">content</span><span class="p">,</span>
+                <span class="p">):</span>
+                    <span class="n">func_name</span> <span class="o">=</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+                    <span class="n">docstring</span> <span class="o">=</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+                    <span class="n">text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">func_name</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">docstring</span><span class="si">}</span><span class="s2">&quot;</span>
+                    <span class="n">s</span> <span class="o">=</span> <span class="n">score_text</span><span class="p">(</span><span class="n">pq</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">fuzzy</span><span class="o">=</span><span class="n">fuzzy</span><span class="p">)</span>
+                    <span class="k">if</span> <span class="n">s</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+                        <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                            <span class="n">_make_result</span><span class="p">(</span>
+                                <span class="n">pkg_name</span><span class="p">,</span>
+                                <span class="n">func_name</span><span class="p">,</span>
+                                <span class="n">docstring</span><span class="p">[:</span><span class="mi">80</span><span class="p">],</span>
+                                <span class="n">s</span><span class="p">,</span>
+                                <span class="s2">&quot;mcp&quot;</span><span class="p">,</span>
+                                <span class="s2">&quot;mcp_tool&quot;</span><span class="p">,</span>
+                            <span class="p">)</span>
+                        <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">results</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
+</body>
+</html>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_ecosystem/_mcp/_utils.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_ecosystem/_mcp/_utils.html
new file mode 100644
index 000000000..35a19c9f9
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_dev/_ecosystem/_mcp/_utils.html
@@ -0,0 +1,838 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_dev._ecosystem._mcp._utils &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=b86133f3" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._ecosystem._mcp._utils</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
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+             
+  <h1>Source code for scitex_dev._ecosystem._mcp._utils</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="sd">&quot;&quot;&quot;MCP utilities for consuming Result objects.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Callable</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">..._core.types</span><span class="w"> </span><span class="kn">import</span> <span class="n">Result</span>
+
+
+<div class="viewcode-block" id="run_as_mcp">
+<a class="viewcode-back" href="../../../../source/api/dev.html#scitex.dev.run_as_mcp">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">run_as_mcp</span><span class="p">(</span><span class="n">fn</span><span class="p">:</span> <span class="n">Callable</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Call a ``@supports_return_as`` function and return MCP-ready JSON.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    fn : Callable</span>
+<span class="sd">        A function decorated with ``@supports_return_as``.</span>
+<span class="sd">    **kwargs</span>
+<span class="sd">        Arguments to pass to ``fn``.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        JSON string with the full Result structure.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">fn</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;result&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">to_json</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="wrap_as_mcp">
+<a class="viewcode-back" href="../../../../source/api/dev.html#scitex.dev.wrap_as_mcp">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">wrap_as_mcp</span><span class="p">(</span>
+    <span class="n">fn</span><span class="p">:</span> <span class="n">Callable</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">side_effects</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">hints_on_error</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">idempotent</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Call any function and wrap its return in Result JSON.</span>
+
+<span class="sd">    Unlike ``run_as_mcp`` (which requires ``@supports_return_as``),</span>
+<span class="sd">    this wraps any plain function. Use this to retrofit existing</span>
+<span class="sd">    handlers without modifying the underlying function.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    fn : Callable</span>
+<span class="sd">        Any callable returning data or raising exceptions.</span>
+<span class="sd">    side_effects : list[str], optional</span>
+<span class="sd">        Declared side effects (e.g. ``[&quot;file_create: /tmp/out.csv&quot;]``).</span>
+<span class="sd">    hints_on_error : list[str], optional</span>
+<span class="sd">        Recovery guidance for expected failures (FAQ-style).</span>
+<span class="sd">    idempotent : bool</span>
+<span class="sd">        Whether the operation is safe to retry.</span>
+<span class="sd">    **kwargs</span>
+<span class="sd">        Arguments to pass to ``fn``.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        JSON string with Result structure.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">..._core.errors</span><span class="w"> </span><span class="kn">import</span> <span class="n">classify_exception</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">data</span> <span class="o">=</span> <span class="n">fn</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">Result</span><span class="p">(</span>
+            <span class="n">success</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">data</span><span class="o">=</span><span class="n">data</span><span class="p">,</span>
+            <span class="n">side_effects</span><span class="o">=</span><span class="n">side_effects</span><span class="p">,</span>
+            <span class="n">idempotent</span><span class="o">=</span><span class="n">idempotent</span><span class="p">,</span>
+        <span class="p">)</span><span class="o">.</span><span class="n">to_json</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+        <span class="n">error_code</span> <span class="o">=</span> <span class="n">classify_exception</span><span class="p">(</span><span class="n">exc</span><span class="p">)</span>
+        <span class="n">err_hints</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">hints_on_error</span> <span class="ow">or</span> <span class="p">[])</span>
+        <span class="n">suggestion</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;suggestion&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">suggestion</span><span class="p">:</span>
+            <span class="n">err_hints</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">suggestion</span><span class="p">)</span>
+        <span class="n">suggestions</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;suggestions&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">suggestions</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">suggestions</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+            <span class="n">err_hints</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">suggestions</span><span class="p">)</span>
+        <span class="n">context</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;context&quot;</span><span class="p">,</span> <span class="p">{})</span>
+        <span class="k">return</span> <span class="n">Result</span><span class="p">(</span>
+            <span class="n">success</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+            <span class="n">error</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">exc</span><span class="p">),</span>
+            <span class="n">error_code</span><span class="o">=</span><span class="n">error_code</span><span class="o">.</span><span class="n">value</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="n">context</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">context</span><span class="p">,</span> <span class="nb">dict</span><span class="p">)</span> <span class="k">else</span> <span class="p">{},</span>
+            <span class="n">hints_on_error</span><span class="o">=</span><span class="n">err_hints</span><span class="p">,</span>
+        <span class="p">)</span><span class="o">.</span><span class="n">to_json</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="async_wrap_as_mcp">
+<a class="viewcode-back" href="../../../../source/api/dev.html#scitex.dev.async_wrap_as_mcp">[docs]</a>
+<span class="k">async</span> <span class="k">def</span><span class="w"> </span><span class="nf">async_wrap_as_mcp</span><span class="p">(</span>
+    <span class="n">coro_fn</span><span class="p">:</span> <span class="n">Callable</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">side_effects</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">hints_on_error</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">idempotent</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Async version of ``wrap_as_mcp`` for async handlers.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    coro_fn : Callable</span>
+<span class="sd">        Any async callable (coroutine function) returning data</span>
+<span class="sd">        or raising exceptions.</span>
+<span class="sd">    side_effects : list[str], optional</span>
+<span class="sd">        Declared side effects.</span>
+<span class="sd">    hints_on_error : list[str], optional</span>
+<span class="sd">        Recovery guidance for expected failures (FAQ-style).</span>
+<span class="sd">    idempotent : bool</span>
+<span class="sd">        Whether the operation is safe to retry.</span>
+<span class="sd">    **kwargs</span>
+<span class="sd">        Arguments to pass to ``coro_fn``.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        JSON string with Result structure.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">..._core.errors</span><span class="w"> </span><span class="kn">import</span> <span class="n">classify_exception</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">data</span> <span class="o">=</span> <span class="k">await</span> <span class="n">coro_fn</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">Result</span><span class="p">(</span>
+            <span class="n">success</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">data</span><span class="o">=</span><span class="n">data</span><span class="p">,</span>
+            <span class="n">side_effects</span><span class="o">=</span><span class="n">side_effects</span><span class="p">,</span>
+            <span class="n">idempotent</span><span class="o">=</span><span class="n">idempotent</span><span class="p">,</span>
+        <span class="p">)</span><span class="o">.</span><span class="n">to_json</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+        <span class="n">error_code</span> <span class="o">=</span> <span class="n">classify_exception</span><span class="p">(</span><span class="n">exc</span><span class="p">)</span>
+        <span class="n">err_hints</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">hints_on_error</span> <span class="ow">or</span> <span class="p">[])</span>
+        <span class="n">suggestion</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;suggestion&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">suggestion</span><span class="p">:</span>
+            <span class="n">err_hints</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">suggestion</span><span class="p">)</span>
+        <span class="n">suggestions</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;suggestions&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">suggestions</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">suggestions</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+            <span class="n">err_hints</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">suggestions</span><span class="p">)</span>
+        <span class="n">context</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s2">&quot;context&quot;</span><span class="p">,</span> <span class="p">{})</span>
+        <span class="k">return</span> <span class="n">Result</span><span class="p">(</span>
+            <span class="n">success</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+            <span class="n">error</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">exc</span><span class="p">),</span>
+            <span class="n">error_code</span><span class="o">=</span><span class="n">error_code</span><span class="o">.</span><span class="n">value</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="n">context</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">context</span><span class="p">,</span> <span class="nb">dict</span><span class="p">)</span> <span class="k">else</span> <span class="p">{},</span>
+            <span class="n">hints_on_error</span><span class="o">=</span><span class="n">err_hints</span><span class="p">,</span>
+        <span class="p">)</span><span class="o">.</span><span class="n">to_json</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="result_to_mcp">
+<a class="viewcode-back" href="../../../../source/api/dev.html#scitex.dev.result_to_mcp">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">result_to_mcp</span><span class="p">(</span><span class="n">result</span><span class="p">:</span> <span class="n">Result</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert an existing Result to MCP-ready JSON.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">to_json</span><span class="p">()</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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new file mode 100644
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/introspect.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#requirements">Requirements</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+      <div class="wy-nav-content">
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._release.fix</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._release.fix</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-03-27</span>
+<span class="c1"># File: scitex_dev/fix.py</span>
+
+<span class="sd">&quot;&quot;&quot;Detect and fix version mismatches across the ecosystem.</span>
+
+<span class="sd">Single-responsibility functions:</span>
+<span class="sd">- detect_mismatches: find packages with version inconsistencies</span>
+<span class="sd">- fix_local: pip install -e for local mismatches</span>
+<span class="sd">- fix_remote: git pull + pip install on remote hosts</span>
+<span class="sd">- fix_init_version: sync __init__.py with pyproject.toml</span>
+<span class="sd">- verify_versions: confirm all versions are aligned after fixes</span>
+
+<span class="sd">The combined fix_mismatches is kept for backward compatibility.</span>
+
+<span class="sd">Safety model: all mutating functions default to confirm=False (dry run).</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._core.config</span><span class="w"> </span><span class="kn">import</span> <span class="n">DevConfig</span><span class="p">,</span> <span class="n">load_config</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._sync</span><span class="w"> </span><span class="kn">import</span> <span class="n">sync_all</span><span class="p">,</span> <span class="n">sync_local</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.versions</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_mismatches</span>
+
+
+<span class="c1"># --- Single-responsibility functions ---</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">detect_mismatches</span><span class="p">(</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Detect version mismatches. Read-only, no side effects.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = all ecosystem packages.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {package_name: {status, issues, local, git, remote}}</span>
+<span class="sd">        Only packages with mismatches are included.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">get_mismatches</span><span class="p">(</span><span class="n">packages</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">fix_local</span><span class="p">(</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Fix local mismatches only: pip install -e for each package.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names to fix. None = auto-detect from mismatches.</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False (default), preview only.</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {package_name: {status, output|commands}}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="k">if</span> <span class="n">packages</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">mismatches</span> <span class="o">=</span> <span class="n">get_mismatches</span><span class="p">()</span>
+        <span class="n">packages</span> <span class="o">=</span> <span class="n">_find_local_mismatches</span><span class="p">(</span><span class="n">mismatches</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{}</span>
+
+    <span class="k">return</span> <span class="n">sync_local</span><span class="p">(</span><span class="n">packages</span><span class="o">=</span><span class="n">packages</span><span class="p">,</span> <span class="n">confirm</span><span class="o">=</span><span class="n">confirm</span><span class="p">,</span> <span class="n">config</span><span class="o">=</span><span class="n">config</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">fix_remote</span><span class="p">(</span>
+    <span class="n">hosts</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">install</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Fix remote mismatches only: git pull + pip install on hosts.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    hosts : list[str] | None</span>
+<span class="sd">        Host names. None = all enabled hosts.</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = auto-detect from mismatches.</span>
+<span class="sd">    install : bool</span>
+<span class="sd">        Run pip install after git pull (default True).</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False (default), preview only.</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {host: {package: {status, output|commands}}}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="k">if</span> <span class="n">packages</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">mismatches</span> <span class="o">=</span> <span class="n">get_mismatches</span><span class="p">()</span>
+        <span class="n">packages</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">mismatches</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{}</span>
+
+    <span class="k">return</span> <span class="n">sync_all</span><span class="p">(</span>
+        <span class="n">hosts</span><span class="o">=</span><span class="n">hosts</span><span class="p">,</span>
+        <span class="n">packages</span><span class="o">=</span><span class="n">packages</span><span class="p">,</span>
+        <span class="n">stash</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="n">install</span><span class="o">=</span><span class="n">install</span><span class="p">,</span>
+        <span class="n">confirm</span><span class="o">=</span><span class="n">confirm</span><span class="p">,</span>
+        <span class="n">config</span><span class="o">=</span><span class="n">config</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">fix_init_version</span><span class="p">(</span>
+    <span class="n">package_path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Sync __init__.py __version__ with pyproject.toml version.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    package_path : str | Path</span>
+<span class="sd">        Path to package root (containing pyproject.toml).</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False, preview only.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {toml_version, init_version, init_path, action, status}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">package_path</span><span class="p">)</span>
+    <span class="n">toml_path</span> <span class="o">=</span> <span class="n">path</span> <span class="o">/</span> <span class="s2">&quot;pyproject.toml&quot;</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">toml_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="s2">&quot;pyproject.toml not found&quot;</span><span class="p">}</span>
+
+    <span class="c1"># Read toml version</span>
+    <span class="n">toml_text</span> <span class="o">=</span> <span class="n">toml_path</span><span class="o">.</span><span class="n">read_text</span><span class="p">()</span>
+    <span class="n">m</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;^version\s*=\s*&quot;([^&quot;]+)&quot;&#39;</span><span class="p">,</span> <span class="n">toml_text</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">m</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="s2">&quot;version not found in pyproject.toml&quot;</span><span class="p">}</span>
+    <span class="n">toml_version</span> <span class="o">=</span> <span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+
+    <span class="c1"># Find __init__.py with __version__</span>
+    <span class="n">init_files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s2">&quot;src/**/__init__.py&quot;</span><span class="p">))</span>
+    <span class="k">for</span> <span class="n">init_path</span> <span class="ow">in</span> <span class="n">init_files</span><span class="p">:</span>
+        <span class="n">init_text</span> <span class="o">=</span> <span class="n">init_path</span><span class="o">.</span><span class="n">read_text</span><span class="p">()</span>
+        <span class="n">vm</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;^__version__\s*=\s*&quot;([^&quot;]+)&quot;&#39;</span><span class="p">,</span> <span class="n">init_text</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">vm</span><span class="p">:</span>
+            <span class="n">init_version</span> <span class="o">=</span> <span class="n">vm</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">init_version</span> <span class="o">==</span> <span class="n">toml_version</span><span class="p">:</span>
+                <span class="k">return</span> <span class="p">{</span>
+                    <span class="s2">&quot;toml_version&quot;</span><span class="p">:</span> <span class="n">toml_version</span><span class="p">,</span>
+                    <span class="s2">&quot;init_version&quot;</span><span class="p">:</span> <span class="n">init_version</span><span class="p">,</span>
+                    <span class="s2">&quot;init_path&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">init_path</span><span class="p">),</span>
+                    <span class="s2">&quot;action&quot;</span><span class="p">:</span> <span class="s2">&quot;skip&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span>
+                <span class="p">}</span>
+
+            <span class="k">if</span> <span class="n">confirm</span><span class="p">:</span>
+                <span class="n">new_text</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span>
+                    <span class="sa">r</span><span class="s1">&#39;^__version__\s*=\s*&quot;[^&quot;]+&quot;&#39;</span><span class="p">,</span>
+                    <span class="sa">f</span><span class="s1">&#39;__version__ = &quot;</span><span class="si">{</span><span class="n">toml_version</span><span class="si">}</span><span class="s1">&quot;&#39;</span><span class="p">,</span>
+                    <span class="n">init_text</span><span class="p">,</span>
+                    <span class="n">count</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+                    <span class="n">flags</span><span class="o">=</span><span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span><span class="p">,</span>
+                <span class="p">)</span>
+                <span class="n">init_path</span><span class="o">.</span><span class="n">write_text</span><span class="p">(</span><span class="n">new_text</span><span class="p">)</span>
+
+            <span class="k">return</span> <span class="p">{</span>
+                <span class="s2">&quot;toml_version&quot;</span><span class="p">:</span> <span class="n">toml_version</span><span class="p">,</span>
+                <span class="s2">&quot;init_version&quot;</span><span class="p">:</span> <span class="n">init_version</span><span class="p">,</span>
+                <span class="s2">&quot;init_path&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">init_path</span><span class="p">),</span>
+                <span class="s2">&quot;action&quot;</span><span class="p">:</span> <span class="s2">&quot;updated&quot;</span> <span class="k">if</span> <span class="n">confirm</span> <span class="k">else</span> <span class="s2">&quot;would_update&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span>
+            <span class="p">}</span>
+
+    <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;toml_version&quot;</span><span class="p">:</span> <span class="n">toml_version</span><span class="p">,</span> <span class="s2">&quot;action&quot;</span><span class="p">:</span> <span class="s2">&quot;no_init_version&quot;</span><span class="p">,</span> <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">verify_versions</span><span class="p">(</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Verify all versions are aligned after fixes.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = all.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {package_name: &quot;ok&quot; | &quot;mismatch: &lt;details&gt;&quot;}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">mismatches</span> <span class="o">=</span> <span class="n">get_mismatches</span><span class="p">(</span><span class="n">packages</span><span class="p">)</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">.versions</span><span class="w"> </span><span class="kn">import</span> <span class="n">list_versions</span>
+
+    <span class="n">all_versions</span> <span class="o">=</span> <span class="n">list_versions</span><span class="p">(</span><span class="n">packages</span><span class="p">)</span>
+    <span class="n">result</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">pkg</span><span class="p">,</span> <span class="n">info</span> <span class="ow">in</span> <span class="n">all_versions</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">pkg</span> <span class="ow">in</span> <span class="n">mismatches</span><span class="p">:</span>
+            <span class="n">issues</span> <span class="o">=</span> <span class="n">mismatches</span><span class="p">[</span><span class="n">pkg</span><span class="p">]</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;issues&quot;</span><span class="p">,</span> <span class="p">[])</span>
+            <span class="n">result</span><span class="p">[</span><span class="n">pkg</span><span class="p">]</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;mismatch: </span><span class="si">{</span><span class="s1">&#39;; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">issues</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">result</span><span class="p">[</span><span class="n">pkg</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;ok&quot;</span>
+    <span class="k">return</span> <span class="n">result</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">bump_version</span><span class="p">(</span>
+    <span class="n">package_path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="n">new_version</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Bump version in pyproject.toml and __init__.py.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    package_path : str | Path</span>
+<span class="sd">        Path to package root (containing pyproject.toml).</span>
+<span class="sd">    new_version : str</span>
+<span class="sd">        New version string (e.g. &quot;0.5.0&quot;).</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False, preview only.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {old_version, new_version, toml_updated, init_updated, status}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">package_path</span><span class="p">)</span>
+    <span class="n">toml_path</span> <span class="o">=</span> <span class="n">path</span> <span class="o">/</span> <span class="s2">&quot;pyproject.toml&quot;</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">toml_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="s2">&quot;pyproject.toml not found&quot;</span><span class="p">}</span>
+
+    <span class="n">toml_text</span> <span class="o">=</span> <span class="n">toml_path</span><span class="o">.</span><span class="n">read_text</span><span class="p">()</span>
+    <span class="n">m</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;^version\s*=\s*&quot;([^&quot;]+)&quot;&#39;</span><span class="p">,</span> <span class="n">toml_text</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">m</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="s2">&quot;version not found in pyproject.toml&quot;</span><span class="p">}</span>
+
+    <span class="n">old_version</span> <span class="o">=</span> <span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">old_version</span> <span class="o">==</span> <span class="n">new_version</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;old_version&quot;</span><span class="p">:</span> <span class="n">old_version</span><span class="p">,</span>
+            <span class="s2">&quot;new_version&quot;</span><span class="p">:</span> <span class="n">new_version</span><span class="p">,</span>
+            <span class="s2">&quot;action&quot;</span><span class="p">:</span> <span class="s2">&quot;skip&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span>
+        <span class="p">}</span>
+
+    <span class="n">result</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;old_version&quot;</span><span class="p">:</span> <span class="n">old_version</span><span class="p">,</span>
+        <span class="s2">&quot;new_version&quot;</span><span class="p">:</span> <span class="n">new_version</span><span class="p">,</span>
+        <span class="s2">&quot;toml_updated&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+        <span class="s2">&quot;init_updated&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+        <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="k">if</span> <span class="n">confirm</span><span class="p">:</span>
+        <span class="n">new_toml</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span>
+            <span class="sa">r</span><span class="s1">&#39;^version\s*=\s*&quot;[^&quot;]+&quot;&#39;</span><span class="p">,</span>
+            <span class="sa">f</span><span class="s1">&#39;version = &quot;</span><span class="si">{</span><span class="n">new_version</span><span class="si">}</span><span class="s1">&quot;&#39;</span><span class="p">,</span>
+            <span class="n">toml_text</span><span class="p">,</span>
+            <span class="n">count</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+            <span class="n">flags</span><span class="o">=</span><span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="n">toml_path</span><span class="o">.</span><span class="n">write_text</span><span class="p">(</span><span class="n">new_toml</span><span class="p">)</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;toml_updated&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+
+        <span class="c1"># Also update __init__.py</span>
+        <span class="n">init_result</span> <span class="o">=</span> <span class="n">fix_init_version</span><span class="p">(</span><span class="n">package_path</span><span class="p">,</span> <span class="n">confirm</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;init_updated&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">init_result</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;action&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;updated&quot;</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;action&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;would_bump&quot;</span>
+
+    <span class="k">return</span> <span class="n">result</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">determine_bump_type</span><span class="p">(</span>
+    <span class="n">package_path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check diff since last tag and classify as minor/patch/skip.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    package_path : str | Path</span>
+<span class="sd">        Path to package root (git repo).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {has_diff, commits_since_tag, has_feat, bump_type, current_version, suggested_version}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">package_path</span><span class="p">)</span>
+
+    <span class="c1"># Get current version</span>
+    <span class="n">toml_path</span> <span class="o">=</span> <span class="n">path</span> <span class="o">/</span> <span class="s2">&quot;pyproject.toml&quot;</span>
+    <span class="n">current_version</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="k">if</span> <span class="n">toml_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="n">m</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span>
+            <span class="sa">r</span><span class="s1">&#39;^version\s*=\s*&quot;([^&quot;]+)&quot;&#39;</span><span class="p">,</span>
+            <span class="n">toml_path</span><span class="o">.</span><span class="n">read_text</span><span class="p">(),</span>
+            <span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">m</span><span class="p">:</span>
+            <span class="n">current_version</span> <span class="o">=</span> <span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+
+    <span class="c1"># Get last tag</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">tag_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;describe&quot;</span><span class="p">,</span> <span class="s2">&quot;--tags&quot;</span><span class="p">,</span> <span class="s2">&quot;--abbrev=0&quot;</span><span class="p">,</span> <span class="s2">&quot;--match&quot;</span><span class="p">,</span> <span class="s2">&quot;v*&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">tag_result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span>
+                <span class="s2">&quot;has_diff&quot;</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
+                <span class="s2">&quot;commits_since_tag&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span>
+                <span class="s2">&quot;bump_type&quot;</span><span class="p">:</span> <span class="s2">&quot;patch&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;current_version&quot;</span><span class="p">:</span> <span class="n">current_version</span><span class="p">,</span>
+                <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="s2">&quot;no tags found&quot;</span><span class="p">,</span>
+            <span class="p">}</span>
+        <span class="n">last_tag</span> <span class="o">=</span> <span class="n">tag_result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+
+    <span class="c1"># Check diff</span>
+    <span class="n">diff_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+        <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;diff&quot;</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">last_tag</span><span class="si">}</span><span class="s2">..HEAD&quot;</span><span class="p">,</span> <span class="s2">&quot;--stat&quot;</span><span class="p">],</span>
+        <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+        <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="n">timeout</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
+    <span class="p">)</span>
+    <span class="n">has_diff</span> <span class="o">=</span> <span class="nb">bool</span><span class="p">(</span><span class="n">diff_result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">has_diff</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;has_diff&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+            <span class="s2">&quot;commits_since_tag&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+            <span class="s2">&quot;bump_type&quot;</span><span class="p">:</span> <span class="s2">&quot;skip&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;current_version&quot;</span><span class="p">:</span> <span class="n">current_version</span><span class="p">,</span>
+            <span class="s2">&quot;last_tag&quot;</span><span class="p">:</span> <span class="n">last_tag</span><span class="p">,</span>
+        <span class="p">}</span>
+
+    <span class="c1"># Count commits and check for feat:</span>
+    <span class="n">log_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+        <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;log&quot;</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">last_tag</span><span class="si">}</span><span class="s2">..HEAD&quot;</span><span class="p">,</span> <span class="s2">&quot;--oneline&quot;</span><span class="p">],</span>
+        <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+        <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="n">timeout</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
+    <span class="p">)</span>
+    <span class="n">commits</span> <span class="o">=</span> <span class="n">log_result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span>
+    <span class="n">has_feat</span> <span class="o">=</span> <span class="nb">any</span><span class="p">(</span><span class="s2">&quot;feat:&quot;</span> <span class="ow">in</span> <span class="n">line</span> <span class="ow">or</span> <span class="s2">&quot;feat(&quot;</span> <span class="ow">in</span> <span class="n">line</span> <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">commits</span><span class="p">)</span>
+    <span class="n">bump_type</span> <span class="o">=</span> <span class="s2">&quot;minor&quot;</span> <span class="k">if</span> <span class="n">has_feat</span> <span class="k">else</span> <span class="s2">&quot;patch&quot;</span>
+
+    <span class="c1"># Suggest version</span>
+    <span class="n">suggested</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="k">if</span> <span class="n">current_version</span><span class="p">:</span>
+        <span class="n">parts</span> <span class="o">=</span> <span class="n">current_version</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">parts</span><span class="p">)</span> <span class="o">==</span> <span class="mi">3</span><span class="p">:</span>
+            <span class="n">major</span><span class="p">,</span> <span class="n">minor</span><span class="p">,</span> <span class="n">patch</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="nb">int</span><span class="p">(</span><span class="n">parts</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span>
+                <span class="nb">int</span><span class="p">(</span><span class="n">parts</span><span class="p">[</span><span class="mi">1</span><span class="p">]),</span>
+                <span class="nb">int</span><span class="p">(</span><span class="n">parts</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]),</span>
+            <span class="p">)</span>
+            <span class="k">if</span> <span class="n">bump_type</span> <span class="o">==</span> <span class="s2">&quot;minor&quot;</span><span class="p">:</span>
+                <span class="n">suggested</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">major</span><span class="si">}</span><span class="s2">.</span><span class="si">{</span><span class="n">minor</span><span class="w"> </span><span class="o">+</span><span class="w"> </span><span class="mi">1</span><span class="si">}</span><span class="s2">.0&quot;</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">suggested</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">major</span><span class="si">}</span><span class="s2">.</span><span class="si">{</span><span class="n">minor</span><span class="si">}</span><span class="s2">.</span><span class="si">{</span><span class="n">patch</span><span class="w"> </span><span class="o">+</span><span class="w"> </span><span class="mi">1</span><span class="si">}</span><span class="s2">&quot;</span>
+
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;has_diff&quot;</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
+        <span class="s2">&quot;commits_since_tag&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">commits</span><span class="p">),</span>
+        <span class="s2">&quot;has_feat&quot;</span><span class="p">:</span> <span class="n">has_feat</span><span class="p">,</span>
+        <span class="s2">&quot;bump_type&quot;</span><span class="p">:</span> <span class="n">bump_type</span><span class="p">,</span>
+        <span class="s2">&quot;current_version&quot;</span><span class="p">:</span> <span class="n">current_version</span><span class="p">,</span>
+        <span class="s2">&quot;suggested_version&quot;</span><span class="p">:</span> <span class="n">suggested</span><span class="p">,</span>
+        <span class="s2">&quot;last_tag&quot;</span><span class="p">:</span> <span class="n">last_tag</span><span class="p">,</span>
+    <span class="p">}</span>
+
+
+<span class="c1"># --- Combined (backward compat) ---</span>
+
+
+<div class="viewcode-block" id="fix_mismatches">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.fix_mismatches">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">fix_mismatches</span><span class="p">(</span>
+    <span class="n">hosts</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">local</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">remote</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Detect version mismatches and fix them.</span>
+
+<span class="sd">    Combines detect + fix_local + fix_remote. Kept for backward compatibility.</span>
+<span class="sd">    Prefer using the individual functions for clarity.</span>
+
+<span class="sd">    Safety: defaults to preview only. Pass confirm=True to execute.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="n">mismatches</span> <span class="o">=</span> <span class="n">get_mismatches</span><span class="p">(</span><span class="n">packages</span><span class="p">)</span>
+    <span class="n">mismatch_names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">mismatches</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span> <span class="k">if</span> <span class="ow">not</span> <span class="n">packages</span> <span class="k">else</span> <span class="n">packages</span>
+
+    <span class="n">result</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;detected&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="n">pkg</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;status&quot;</span><span class="p">),</span> <span class="s2">&quot;issues&quot;</span><span class="p">:</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;issues&quot;</span><span class="p">,</span> <span class="p">[])}</span>
+            <span class="k">for</span> <span class="n">pkg</span><span class="p">,</span> <span class="n">info</span> <span class="ow">in</span> <span class="n">mismatches</span><span class="o">.</span><span class="n">items</span><span class="p">()</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;local_fixes&quot;</span><span class="p">:</span> <span class="p">{},</span>
+        <span class="s2">&quot;remote_fixes&quot;</span><span class="p">:</span> <span class="p">{},</span>
+        <span class="s2">&quot;summary&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;detected&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">mismatches</span><span class="p">),</span> <span class="s2">&quot;local_fixed&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;remote_fixed&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">},</span>
+    <span class="p">}</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">mismatch_names</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">result</span>
+
+    <span class="k">if</span> <span class="n">local</span><span class="p">:</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;local_fixes&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">fix_local</span><span class="p">(</span>
+            <span class="n">packages</span><span class="o">=</span><span class="n">_find_local_mismatches</span><span class="p">(</span><span class="n">mismatches</span><span class="p">),</span>
+            <span class="n">confirm</span><span class="o">=</span><span class="n">confirm</span><span class="p">,</span>
+            <span class="n">config</span><span class="o">=</span><span class="n">config</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">confirm</span><span class="p">:</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;summary&quot;</span><span class="p">][</span><span class="s2">&quot;local_fixed&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span>
+                <span class="mi">1</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;local_fixes&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">values</span><span class="p">()</span> <span class="k">if</span> <span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;status&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;ok&quot;</span>
+            <span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">remote</span><span class="p">:</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;remote_fixes&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">fix_remote</span><span class="p">(</span>
+            <span class="n">hosts</span><span class="o">=</span><span class="n">hosts</span><span class="p">,</span>
+            <span class="n">packages</span><span class="o">=</span><span class="n">mismatch_names</span><span class="p">,</span>
+            <span class="n">confirm</span><span class="o">=</span><span class="n">confirm</span><span class="p">,</span>
+            <span class="n">config</span><span class="o">=</span><span class="n">config</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">confirm</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">host_results</span> <span class="ow">in</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;remote_fixes&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
+                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">host_results</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+                    <span class="n">result</span><span class="p">[</span><span class="s2">&quot;summary&quot;</span><span class="p">][</span><span class="s2">&quot;remote_fixed&quot;</span><span class="p">]</span> <span class="o">+=</span> <span class="nb">sum</span><span class="p">(</span>
+                        <span class="mi">1</span>
+                        <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">host_results</span><span class="o">.</span><span class="n">values</span><span class="p">()</span>
+                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="nb">dict</span><span class="p">)</span> <span class="ow">and</span> <span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;status&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;ok&quot;</span>
+                    <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">result</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_find_local_mismatches</span><span class="p">(</span><span class="n">mismatches</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Extract package names where local installed != toml version.&quot;&quot;&quot;</span>
+    <span class="n">to_fix</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">pkg</span><span class="p">,</span> <span class="n">info</span> <span class="ow">in</span> <span class="n">mismatches</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="n">lv</span> <span class="o">=</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;local&quot;</span><span class="p">,</span> <span class="p">{})</span>
+        <span class="n">toml</span> <span class="o">=</span> <span class="n">lv</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;pyproject_toml&quot;</span><span class="p">)</span>
+        <span class="n">installed</span> <span class="o">=</span> <span class="n">lv</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;installed&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">toml</span> <span class="ow">and</span> <span class="n">installed</span> <span class="ow">and</span> <span class="n">toml</span> <span class="o">!=</span> <span class="n">installed</span><span class="p">:</span>
+            <span class="n">to_fix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">pkg</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="n">toml</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">installed</span><span class="p">:</span>
+            <span class="n">to_fix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">pkg</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">to_fix</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
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+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_release/versions.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_release/versions.html
new file mode 100644
index 000000000..77883284c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_dev/_release/versions.html
@@ -0,0 +1,1157 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_dev._release.versions &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../../genindex.html" />
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+</head>
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+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+          
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+            SciTeX
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+  <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../modules/stats.html#api-reference">API Reference</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
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+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._release.versions</li>
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+      </li>
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+             
+  <h1>Source code for scitex_dev._release.versions</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-02-02</span>
+<span class="c1"># File: scitex_dev/versions.py</span>
+
+<span class="sd">&quot;&quot;&quot;Core version checking logic for the scitex ecosystem.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._ecosystem</span><span class="w"> </span><span class="kn">import</span> <span class="n">ECOSYSTEM</span><span class="p">,</span> <span class="n">get_all_packages</span><span class="p">,</span> <span class="n">get_local_path</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_version_from_toml</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Read version from pyproject.toml.&quot;&quot;&quot;</span>
+    <span class="n">toml_path</span> <span class="o">=</span> <span class="n">path</span> <span class="o">/</span> <span class="s2">&quot;pyproject.toml&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">toml_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="c1"># Python 3.11+</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">tomllib</span>
+
+        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">toml_path</span><span class="p">,</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+            <span class="n">data</span> <span class="o">=</span> <span class="n">tomllib</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">tomli</span>
+
+            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">toml_path</span><span class="p">,</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+                <span class="n">data</span> <span class="o">=</span> <span class="n">tomli</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+            <span class="c1"># Fallback: regex parse</span>
+            <span class="n">content</span> <span class="o">=</span> <span class="n">toml_path</span><span class="o">.</span><span class="n">read_text</span><span class="p">()</span>
+            <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span>
+                <span class="sa">r</span><span class="s1">&#39;^version\s*=\s*[&quot;</span><span class="se">\&#39;</span><span class="s1">]([^&quot;</span><span class="se">\&#39;</span><span class="s1">]+)[&quot;</span><span class="se">\&#39;</span><span class="s1">]&#39;</span><span class="p">,</span> <span class="n">content</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span>
+            <span class="p">)</span>
+            <span class="k">return</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="n">match</span> <span class="k">else</span> <span class="kc">None</span>
+
+    <span class="k">return</span> <span class="n">data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;project&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;version&quot;</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_version_installed</span><span class="p">(</span><span class="n">package</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get version from importlib.metadata.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">importlib.metadata</span><span class="w"> </span><span class="kn">import</span> <span class="n">version</span>
+
+        <span class="k">return</span> <span class="n">version</span><span class="p">(</span><span class="n">package</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_commits_since_tag</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Count commits since latest version tag. Returns None if no tags.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;rev-list&quot;</span><span class="p">,</span> <span class="s2">&quot;--count&quot;</span><span class="p">,</span> <span class="s2">&quot;HEAD&quot;</span><span class="p">,</span> <span class="s2">&quot;--not&quot;</span><span class="p">,</span> <span class="s2">&quot;--tags=v*&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="c1"># Fallback: count via log</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">tag_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;describe&quot;</span><span class="p">,</span> <span class="s2">&quot;--tags&quot;</span><span class="p">,</span> <span class="s2">&quot;--abbrev=0&quot;</span><span class="p">,</span> <span class="s2">&quot;--match&quot;</span><span class="p">,</span> <span class="s2">&quot;v*&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">tag_result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">None</span>
+        <span class="n">tag</span> <span class="o">=</span> <span class="n">tag_result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="n">log_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;rev-list&quot;</span><span class="p">,</span> <span class="s2">&quot;--count&quot;</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">tag</span><span class="si">}</span><span class="s2">..HEAD&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">log_result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">log_result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_git_latest_tag</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get latest git tag (version tags only).&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;describe&quot;</span><span class="p">,</span> <span class="s2">&quot;--tags&quot;</span><span class="p">,</span> <span class="s2">&quot;--abbrev=0&quot;</span><span class="p">,</span> <span class="s2">&quot;--match&quot;</span><span class="p">,</span> <span class="s2">&quot;v*&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="c1"># Fallback: list all tags</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;tag&quot;</span><span class="p">,</span> <span class="s2">&quot;-l&quot;</span><span class="p">,</span> <span class="s2">&quot;v*&quot;</span><span class="p">,</span> <span class="s2">&quot;--sort=-v:refname&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+            <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_git_branch</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get current git branch.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;rev-parse&quot;</span><span class="p">,</span> <span class="s2">&quot;--abbrev-ref&quot;</span><span class="p">,</span> <span class="s2">&quot;HEAD&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_git_status</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get git worktree status (dirty/clean, ahead/behind remote).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict or None</span>
+<span class="sd">        Keys: dirty (bool), ahead (int), behind (int), short_hash (str).</span>
+<span class="sd">        Returns None if path doesn&#39;t exist or is not a git repo.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="n">info</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;dirty&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span> <span class="s2">&quot;ahead&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;behind&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;short_hash&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">}</span>
+
+    <span class="c1"># Check if dirty (uncommitted changes)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;status&quot;</span><span class="p">,</span> <span class="s2">&quot;--porcelain&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;dirty&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">bool</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="c1"># Get short commit hash</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;rev-parse&quot;</span><span class="p">,</span> <span class="s2">&quot;--short&quot;</span><span class="p">,</span> <span class="s2">&quot;HEAD&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;short_hash&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="c1"># Ahead/behind upstream</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;rev-list&quot;</span><span class="p">,</span> <span class="s2">&quot;--left-right&quot;</span><span class="p">,</span> <span class="s2">&quot;--count&quot;</span><span class="p">,</span> <span class="s2">&quot;HEAD...@</span><span class="si">{upstream}</span><span class="s2">&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">parts</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
+            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">parts</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;ahead&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">parts</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;behind&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">parts</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="k">return</span> <span class="n">info</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_pypi_version</span><span class="p">(</span><span class="n">package</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Fetch latest version from PyPI API.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">urllib.request</span>
+
+        <span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://pypi.org/pypi/</span><span class="si">{</span><span class="n">package</span><span class="si">}</span><span class="s2">/json&quot;</span>
+        <span class="k">with</span> <span class="n">urllib</span><span class="o">.</span><span class="n">request</span><span class="o">.</span><span class="n">urlopen</span><span class="p">(</span><span class="n">url</span><span class="p">,</span> <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span> <span class="k">as</span> <span class="n">response</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+
+            <span class="n">data</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">response</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">decode</span><span class="p">())</span>
+            <span class="k">return</span> <span class="n">data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;info&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;version&quot;</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_normalize_version</span><span class="p">(</span><span class="n">v</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Normalize version string (strip v prefix).&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">v</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="k">return</span> <span class="n">v</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s2">&quot;v&quot;</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_pep440_equal</span><span class="p">(</span><span class="n">v1</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">,</span> <span class="n">v2</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Compare two version strings using PEP 440 normalization.</span>
+
+<span class="sd">    Treats e.g. &#39;0.10.3-alpha&#39; and &#39;0.10.3a0&#39; as equal.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">v1</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">v2</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">v1</span> <span class="o">==</span> <span class="n">v2</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">packaging.version</span><span class="w"> </span><span class="kn">import</span> <span class="n">InvalidVersion</span><span class="p">,</span> <span class="n">Version</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">Version</span><span class="p">(</span><span class="n">_normalize_version</span><span class="p">(</span><span class="n">v1</span><span class="p">))</span> <span class="o">==</span> <span class="n">Version</span><span class="p">(</span><span class="n">_normalize_version</span><span class="p">(</span><span class="n">v2</span><span class="p">))</span>
+    <span class="k">except</span> <span class="n">InvalidVersion</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_normalize_version</span><span class="p">(</span><span class="n">v1</span><span class="p">)</span> <span class="o">==</span> <span class="n">_normalize_version</span><span class="p">(</span><span class="n">v2</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_compare_versions</span><span class="p">(</span><span class="n">v1</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">,</span> <span class="n">v2</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Compare two version strings. Returns -1, 0, or 1.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">v1</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">v2</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="mi">0</span>
+
+    <span class="kn">from</span><span class="w"> </span><span class="nn">packaging.version</span><span class="w"> </span><span class="kn">import</span> <span class="n">Version</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">ver1</span> <span class="o">=</span> <span class="n">Version</span><span class="p">(</span><span class="n">_normalize_version</span><span class="p">(</span><span class="n">v1</span><span class="p">))</span>
+        <span class="n">ver2</span> <span class="o">=</span> <span class="n">Version</span><span class="p">(</span><span class="n">_normalize_version</span><span class="p">(</span><span class="n">v2</span><span class="p">))</span>
+        <span class="k">if</span> <span class="n">ver1</span> <span class="o">&lt;</span> <span class="n">ver2</span><span class="p">:</span>
+            <span class="k">return</span> <span class="o">-</span><span class="mi">1</span>
+        <span class="k">if</span> <span class="n">ver1</span> <span class="o">&gt;</span> <span class="n">ver2</span><span class="p">:</span>
+            <span class="k">return</span> <span class="mi">1</span>
+        <span class="k">return</span> <span class="mi">0</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="c1"># Fallback: string comparison</span>
+        <span class="k">return</span> <span class="mi">0</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_determine_status</span><span class="p">(</span><span class="n">info</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Determine version status and issues.&quot;&quot;&quot;</span>
+    <span class="n">issues</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="n">toml_ver</span> <span class="o">=</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;local&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;pyproject_toml&quot;</span><span class="p">)</span>
+    <span class="n">installed_ver</span> <span class="o">=</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;local&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;installed&quot;</span><span class="p">)</span>
+    <span class="n">tag_ver</span> <span class="o">=</span> <span class="n">_normalize_version</span><span class="p">(</span><span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;latest_tag&quot;</span><span class="p">))</span>
+    <span class="n">pypi_ver</span> <span class="o">=</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;remote&quot;</span><span class="p">,</span> <span class="p">{})</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;pypi&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Check local consistency (PEP 440: &#39;0.10.3-alpha&#39; == &#39;0.10.3a0&#39;)</span>
+    <span class="k">if</span> <span class="n">toml_ver</span> <span class="ow">and</span> <span class="n">installed_ver</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">_pep440_equal</span><span class="p">(</span><span class="n">toml_ver</span><span class="p">,</span> <span class="n">installed_ver</span><span class="p">):</span>
+        <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;pyproject.toml (</span><span class="si">{</span><span class="n">toml_ver</span><span class="si">}</span><span class="s2">) != installed (</span><span class="si">{</span><span class="n">installed_ver</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Check if toml matches tag</span>
+    <span class="k">if</span> <span class="n">toml_ver</span> <span class="ow">and</span> <span class="n">tag_ver</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">_pep440_equal</span><span class="p">(</span><span class="n">toml_ver</span><span class="p">,</span> <span class="n">tag_ver</span><span class="p">):</span>
+        <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;pyproject.toml (</span><span class="si">{</span><span class="n">toml_ver</span><span class="si">}</span><span class="s2">) != git tag (</span><span class="si">{</span><span class="n">tag_ver</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Check pypi status</span>
+    <span class="k">if</span> <span class="n">toml_ver</span> <span class="ow">and</span> <span class="n">pypi_ver</span><span class="p">:</span>
+        <span class="n">cmp</span> <span class="o">=</span> <span class="n">_compare_versions</span><span class="p">(</span><span class="n">toml_ver</span><span class="p">,</span> <span class="n">pypi_ver</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">cmp</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;local (</span><span class="si">{</span><span class="n">toml_ver</span><span class="si">}</span><span class="s2">) &gt; pypi (</span><span class="si">{</span><span class="n">pypi_ver</span><span class="si">}</span><span class="s2">) - ready to release&quot;</span><span class="p">)</span>
+            <span class="k">return</span> <span class="s2">&quot;unreleased&quot;</span><span class="p">,</span> <span class="n">issues</span>
+        <span class="k">if</span> <span class="n">cmp</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;local (</span><span class="si">{</span><span class="n">toml_ver</span><span class="si">}</span><span class="s2">) &lt; pypi (</span><span class="si">{</span><span class="n">pypi_ver</span><span class="si">}</span><span class="s2">) - outdated&quot;</span><span class="p">)</span>
+            <span class="k">return</span> <span class="s2">&quot;outdated&quot;</span><span class="p">,</span> <span class="n">issues</span>
+
+    <span class="c1"># Check code-version mismatch (commits since last tag)</span>
+    <span class="n">git_info</span> <span class="o">=</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="p">{})</span>
+    <span class="n">commits_since</span> <span class="o">=</span> <span class="n">git_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;commits_since_tag&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">commits_since</span> <span class="ow">and</span> <span class="n">commits_since</span> <span class="o">&gt;</span> <span class="mi">0</span> <span class="ow">and</span> <span class="n">toml_ver</span> <span class="ow">and</span> <span class="n">tag_ver</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">_pep440_equal</span><span class="p">(</span><span class="n">toml_ver</span><span class="p">,</span> <span class="n">tag_ver</span><span class="p">):</span>
+            <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">commits_since</span><span class="si">}</span><span class="s2"> commit(s) since </span><span class="si">{</span><span class="n">tag_ver</span><span class="si">}</span><span class="s2"> but version not bumped&quot;</span>
+            <span class="p">)</span>
+
+    <span class="c1"># Check git worktree status</span>
+    <span class="k">if</span> <span class="n">git_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;dirty&quot;</span><span class="p">):</span>
+        <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;uncommitted changes&quot;</span><span class="p">)</span>
+    <span class="n">ahead</span> <span class="o">=</span> <span class="n">git_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;ahead&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+    <span class="n">behind</span> <span class="o">=</span> <span class="n">git_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;behind&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">ahead</span><span class="p">:</span>
+        <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">ahead</span><span class="si">}</span><span class="s2"> commit(s) ahead of remote&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">behind</span><span class="p">:</span>
+        <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">behind</span><span class="si">}</span><span class="s2"> commit(s) behind remote&quot;</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">issues</span><span class="p">:</span>
+        <span class="k">return</span> <span class="s2">&quot;mismatch&quot;</span><span class="p">,</span> <span class="n">issues</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">toml_ver</span><span class="p">:</span>
+        <span class="k">return</span> <span class="s2">&quot;unavailable&quot;</span><span class="p">,</span> <span class="p">[</span><span class="s2">&quot;package not found locally&quot;</span><span class="p">]</span>
+
+    <span class="k">return</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span> <span class="p">[]</span>
+
+
+<div class="viewcode-block" id="list_versions">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.list_versions">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">list_versions</span><span class="p">(</span><span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;List versions for all ecosystem packages.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        List of package names to check. If None, checks all ecosystem packages.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Version information for each package.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">packages</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">packages</span> <span class="o">=</span> <span class="n">get_all_packages</span><span class="p">()</span>
+
+    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">pkg</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">pkg</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">ECOSYSTEM</span><span class="p">:</span>
+            <span class="n">result</span><span class="p">[</span><span class="n">pkg</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;unknown&quot;</span><span class="p">,</span> <span class="s2">&quot;issues&quot;</span><span class="p">:</span> <span class="p">[</span><span class="sa">f</span><span class="s2">&quot;&#39;</span><span class="si">{</span><span class="n">pkg</span><span class="si">}</span><span class="s2">&#39; not in ecosystem&quot;</span><span class="p">]}</span>
+            <span class="k">continue</span>
+
+        <span class="n">info</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;local&quot;</span><span class="p">:</span> <span class="p">{},</span> <span class="s2">&quot;git&quot;</span><span class="p">:</span> <span class="p">{},</span> <span class="s2">&quot;remote&quot;</span><span class="p">:</span> <span class="p">{}}</span>
+        <span class="n">local_path</span> <span class="o">=</span> <span class="n">get_local_path</span><span class="p">(</span><span class="n">pkg</span><span class="p">)</span>
+        <span class="n">pypi_name</span> <span class="o">=</span> <span class="n">ECOSYSTEM</span><span class="p">[</span><span class="n">pkg</span><span class="p">]</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;pypi_name&quot;</span><span class="p">,</span> <span class="n">pkg</span><span class="p">)</span>
+
+        <span class="c1"># Local sources</span>
+        <span class="k">if</span> <span class="n">local_path</span> <span class="ow">and</span> <span class="n">local_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;local&quot;</span><span class="p">][</span><span class="s2">&quot;pyproject_toml&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">get_version_from_toml</span><span class="p">(</span><span class="n">local_path</span><span class="p">)</span>
+        <span class="n">info</span><span class="p">[</span><span class="s2">&quot;local&quot;</span><span class="p">][</span><span class="s2">&quot;installed&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">get_version_installed</span><span class="p">(</span><span class="n">pypi_name</span><span class="p">)</span>
+
+        <span class="c1"># Git sources</span>
+        <span class="k">if</span> <span class="n">local_path</span> <span class="ow">and</span> <span class="n">local_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">][</span><span class="s2">&quot;latest_tag&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">get_git_latest_tag</span><span class="p">(</span><span class="n">local_path</span><span class="p">)</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">][</span><span class="s2">&quot;branch&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">get_git_branch</span><span class="p">(</span><span class="n">local_path</span><span class="p">)</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">][</span><span class="s2">&quot;commits_since_tag&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">get_commits_since_tag</span><span class="p">(</span><span class="n">local_path</span><span class="p">)</span>
+            <span class="n">git_status</span> <span class="o">=</span> <span class="n">get_git_status</span><span class="p">(</span><span class="n">local_path</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">git_status</span><span class="p">:</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">][</span><span class="s2">&quot;dirty&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">git_status</span><span class="p">[</span><span class="s2">&quot;dirty&quot;</span><span class="p">]</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">][</span><span class="s2">&quot;ahead&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">git_status</span><span class="p">[</span><span class="s2">&quot;ahead&quot;</span><span class="p">]</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">][</span><span class="s2">&quot;behind&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">git_status</span><span class="p">[</span><span class="s2">&quot;behind&quot;</span><span class="p">]</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">][</span><span class="s2">&quot;short_hash&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">git_status</span><span class="p">[</span><span class="s2">&quot;short_hash&quot;</span><span class="p">]</span>
+
+        <span class="c1"># Remote sources</span>
+        <span class="n">info</span><span class="p">[</span><span class="s2">&quot;remote&quot;</span><span class="p">][</span><span class="s2">&quot;pypi&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">get_pypi_version</span><span class="p">(</span><span class="n">pypi_name</span><span class="p">)</span>
+
+        <span class="c1"># Determine status</span>
+        <span class="n">status</span><span class="p">,</span> <span class="n">issues</span> <span class="o">=</span> <span class="n">_determine_status</span><span class="p">(</span><span class="n">info</span><span class="p">)</span>
+        <span class="n">info</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">status</span>
+        <span class="n">info</span><span class="p">[</span><span class="s2">&quot;issues&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">issues</span>
+
+        <span class="n">result</span><span class="p">[</span><span class="n">pkg</span><span class="p">]</span> <span class="o">=</span> <span class="n">info</span>
+
+    <span class="k">return</span> <span class="n">result</span></div>
+
+
+
+<div class="viewcode-block" id="check_versions">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.check_versions">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">check_versions</span><span class="p">(</span><span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check version consistency and return detailed status.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        List of package names to check. If None, checks all ecosystem packages.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Detailed version check results with overall summary.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">versions</span> <span class="o">=</span> <span class="n">list_versions</span><span class="p">(</span><span class="n">packages</span><span class="p">)</span>
+
+    <span class="n">summary</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;total&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">versions</span><span class="p">),</span>
+        <span class="s2">&quot;ok&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+        <span class="s2">&quot;mismatch&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+        <span class="s2">&quot;unreleased&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+        <span class="s2">&quot;outdated&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+        <span class="s2">&quot;unavailable&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+        <span class="s2">&quot;unknown&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="k">for</span> <span class="n">_pkg</span><span class="p">,</span> <span class="n">info</span> <span class="ow">in</span> <span class="n">versions</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="n">status</span> <span class="o">=</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;status&quot;</span><span class="p">,</span> <span class="s2">&quot;unknown&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">status</span> <span class="ow">in</span> <span class="n">summary</span><span class="p">:</span>
+            <span class="n">summary</span><span class="p">[</span><span class="n">status</span><span class="p">]</span> <span class="o">+=</span> <span class="mi">1</span>
+
+    <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;packages&quot;</span><span class="p">:</span> <span class="n">versions</span><span class="p">,</span> <span class="s2">&quot;summary&quot;</span><span class="p">:</span> <span class="n">summary</span><span class="p">}</span></div>
+
+
+
+<div class="viewcode-block" id="get_mismatches">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.get_mismatches">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_mismatches</span><span class="p">(</span><span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return packages with non-ok status and their issues.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names to check. None = all ecosystem packages.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {package_name: {status, issues, local, git, remote}} for non-ok packages.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">versions</span> <span class="o">=</span> <span class="n">list_versions</span><span class="p">(</span><span class="n">packages</span><span class="p">)</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="n">pkg</span><span class="p">:</span> <span class="n">info</span>
+        <span class="k">for</span> <span class="n">pkg</span><span class="p">,</span> <span class="n">info</span> <span class="ow">in</span> <span class="n">versions</span><span class="o">.</span><span class="n">items</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;status&quot;</span><span class="p">)</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;ok&quot;</span><span class="p">,</span> <span class="s2">&quot;unavailable&quot;</span><span class="p">)</span>
+    <span class="p">}</span></div>
+
+
+
+<div class="viewcode-block" id="get_ecosystem_versions">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.get_ecosystem_versions">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_ecosystem_versions</span><span class="p">(</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return a flat `{pkg_name: installed_version}` dict for the ecosystem.</span>
+
+<span class="sd">    Thin wrapper over `list_versions` for consumers that just need the</span>
+<span class="sd">    installed-version string (Django health endpoints, Docker HEALTHCHECK</span>
+<span class="sd">    scripts, dashboards). Skips all the git / PyPI / pyproject cross-</span>
+<span class="sd">    check detail.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names to check. None = all ecosystem packages.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict[str, str | None]</span>
+<span class="sd">        ``{&quot;scitex&quot;: &quot;2.27.3&quot;, &quot;figrecipe&quot;: &quot;0.28.1&quot;, &quot;scitex-io&quot;: None}``.</span>
+<span class="sd">        None means the package is not installed.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_dev import get_ecosystem_versions</span>
+<span class="sd">    &gt;&gt;&gt; vers = get_ecosystem_versions()</span>
+<span class="sd">    &gt;&gt;&gt; vers[&quot;scitex&quot;]</span>
+<span class="sd">    &#39;2.27.3&#39;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">details</span> <span class="o">=</span> <span class="n">list_versions</span><span class="p">(</span><span class="n">packages</span><span class="p">)</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="n">pkg</span><span class="p">:</span> <span class="p">(</span><span class="n">info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;local&quot;</span><span class="p">,</span> <span class="p">{})</span> <span class="ow">or</span> <span class="p">{})</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;installed&quot;</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">pkg</span><span class="p">,</span> <span class="n">info</span> <span class="ow">in</span> <span class="n">details</span><span class="o">.</span><span class="n">items</span><span class="p">()</span>
+    <span class="p">}</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_dev/_sync/_local.html b/src/scitex/_sphinx_html/_modules/scitex_dev/_sync/_local.html
new file mode 100644
index 000000000..5967469d9
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+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
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+</ul>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._sync._local</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_dev._sync._local</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-02-24</span>
+<span class="c1"># File: scitex_dev/sync.py</span>
+
+<span class="sd">&quot;&quot;&quot;Ecosystem package sync across local and remote hosts.</span>
+
+<span class="sd">Safety model (like bulk_rename):</span>
+<span class="sd">  - All operations default to dry_run=True (preview only).</span>
+<span class="sd">  - Pass confirm=True to actually execute.</span>
+<span class="sd">  - CLI requires --confirm flag.</span>
+<span class="sd">  - MCP tool requires confirm=True parameter.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">concurrent.futures</span><span class="w"> </span><span class="kn">import</span> <span class="n">ThreadPoolExecutor</span><span class="p">,</span> <span class="n">as_completed</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._core.config</span><span class="w"> </span><span class="kn">import</span> <span class="n">DevConfig</span><span class="p">,</span> <span class="n">HostConfig</span><span class="p">,</span> <span class="n">get_enabled_hosts</span><span class="p">,</span> <span class="n">load_config</span>
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># SSH helpers</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_build_ssh_args</span><span class="p">(</span><span class="n">host</span><span class="p">:</span> <span class="n">HostConfig</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Build SSH command prefix for a host.&quot;&quot;&quot;</span>
+    <span class="n">args</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;ssh&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">host</span><span class="o">.</span><span class="n">ssh_key</span><span class="p">:</span>
+        <span class="n">args</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="s2">&quot;-i&quot;</span><span class="p">,</span> <span class="n">host</span><span class="o">.</span><span class="n">ssh_key</span><span class="p">])</span>
+    <span class="k">if</span> <span class="n">host</span><span class="o">.</span><span class="n">port</span> <span class="o">!=</span> <span class="mi">22</span><span class="p">:</span>
+        <span class="n">args</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="s2">&quot;-p&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">host</span><span class="o">.</span><span class="n">port</span><span class="p">)])</span>
+    <span class="n">args</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span>
+        <span class="p">[</span>
+            <span class="s2">&quot;-o&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;BatchMode=yes&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;-o&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;StrictHostKeyChecking=accept-new&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;-o&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;ConnectTimeout=10&quot;</span><span class="p">,</span>
+        <span class="p">]</span>
+    <span class="p">)</span>
+    <span class="n">args</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">host</span><span class="o">.</span><span class="n">user</span><span class="si">}</span><span class="s2">@</span><span class="si">{</span><span class="n">host</span><span class="o">.</span><span class="n">hostname</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">args</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_host_packages</span><span class="p">(</span><span class="n">host</span><span class="p">:</span> <span class="n">HostConfig</span><span class="p">,</span> <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">tuple</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get (package_name, remote_dir_name) pairs for a host.</span>
+
+<span class="sd">    Resolution: legacy ``host.packages`` allow-list wins; otherwise</span>
+<span class="sd">    default to all ecosystem packages minus ``host.exclude``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">pkg_map</span> <span class="o">=</span> <span class="p">{</span><span class="n">p</span><span class="o">.</span><span class="n">name</span><span class="p">:</span> <span class="n">p</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">config</span><span class="o">.</span><span class="n">packages</span><span class="p">}</span>
+    <span class="k">if</span> <span class="n">host</span><span class="o">.</span><span class="n">packages</span><span class="p">:</span>
+        <span class="n">names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">host</span><span class="o">.</span><span class="n">packages</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">excluded</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">host</span><span class="o">.</span><span class="n">exclude</span> <span class="ow">or</span> <span class="p">[])</span>
+        <span class="n">names</span> <span class="o">=</span> <span class="p">[</span><span class="n">p</span><span class="o">.</span><span class="n">name</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">config</span><span class="o">.</span><span class="n">packages</span> <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">excluded</span><span class="p">]</span>
+    <span class="n">out</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">:</span>
+        <span class="n">pkg</span> <span class="o">=</span> <span class="n">pkg_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">pkg</span> <span class="ow">and</span> <span class="n">pkg</span><span class="o">.</span><span class="n">local_path</span><span class="p">:</span>
+            <span class="n">out</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">name</span><span class="p">,</span> <span class="n">Path</span><span class="p">(</span><span class="n">pkg</span><span class="o">.</span><span class="n">local_path</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span><span class="o">.</span><span class="n">name</span><span class="p">))</span>
+    <span class="k">return</span> <span class="n">out</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_build_sync_commands</span><span class="p">(</span>
+    <span class="n">host</span><span class="p">:</span> <span class="n">HostConfig</span><span class="p">,</span> <span class="n">dir_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">stash</span><span class="p">:</span> <span class="nb">bool</span><span class="p">,</span> <span class="n">install</span><span class="p">:</span> <span class="nb">bool</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Build the shell commands that would be run for a package.&quot;&quot;&quot;</span>
+    <span class="n">base</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">host</span><span class="o">.</span><span class="n">remote_base</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">dir_name</span><span class="si">}</span><span class="s2">&quot;</span>
+    <span class="n">cmds</span> <span class="o">=</span> <span class="p">[</span><span class="sa">f</span><span class="s2">&quot;cd </span><span class="si">{</span><span class="n">base</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">install</span><span class="p">:</span>
+        <span class="c1"># Ensure .venv symlink exists so pip resolves to the right env</span>
+        <span class="n">cmds</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;test -e .venv || ln -s ~/.venv .venv 2&gt;/dev/null || true&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">stash</span><span class="p">:</span>
+        <span class="n">cmds</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;git stash&quot;</span><span class="p">)</span>
+    <span class="n">cmds</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;git pull&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">install</span><span class="p">:</span>
+        <span class="n">cmds</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">host</span><span class="o">.</span><span class="n">pip_bin</span><span class="si">}</span><span class="s2"> install -e . -q&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">stash</span><span class="p">:</span>
+        <span class="n">cmds</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;git stash pop 2&gt;/dev/null || true&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">cmds</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_check_ahead_state</span><span class="p">(</span>
+    <span class="n">host</span><span class="p">:</span> <span class="n">HostConfig</span><span class="p">,</span>
+    <span class="n">dir_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">subprocess_run</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Inspect the remote working copy&#39;s position vs. its upstream.</span>
+
+<span class="sd">    Returns a dict with ``status`` in:</span>
+<span class="sd">      - ``clean``: up-to-date or only behind upstream (safe to pull).</span>
+<span class="sd">      - ``ahead``: remote-side has unpushed commits — fast-forward pull</span>
+<span class="sd">        would be blocked; skip to avoid clobbering local work.</span>
+<span class="sd">      - ``diverged``: both ahead and behind — needs human decision.</span>
+<span class="sd">      - ``missing``: repo dir or git metadata absent.</span>
+<span class="sd">      - ``error``: SSH/git failure; see ``error`` field.</span>
+
+<span class="sd">    Also returns ``local_ahead`` (remote-side commits ahead of</span>
+<span class="sd">    ``@{u}``) and ``remote_ahead`` (``@{u}`` commits ahead of HEAD).</span>
+<span class="sd">    &quot;Local&quot; here is confusingly the *remote host&#39;s* working copy —</span>
+<span class="sd">    the caller is on some other machine.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">base</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">host</span><span class="o">.</span><span class="n">remote_base</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">dir_name</span><span class="si">}</span><span class="s2">&quot;</span>
+    <span class="c1"># Single-line remote script — uses unique sentinels so output parsing</span>
+    <span class="c1"># survives line-wrap/colorization from git or shell integrations.</span>
+    <span class="n">remote_cmd</span> <span class="o">=</span> <span class="p">(</span>
+        <span class="sa">f</span><span class="s2">&quot;cd </span><span class="si">{</span><span class="n">base</span><span class="si">}</span><span class="s2"> 2&gt;/dev/null || </span><span class="se">{{</span><span class="s2"> echo SACDEV_MISSING; exit 0; </span><span class="se">}}</span><span class="s2">; &quot;</span>
+        <span class="s2">&quot;if [ ! -d .git ]; then echo SACDEV_MISSING; exit 0; fi; &quot;</span>
+        <span class="s2">&quot;git fetch -q 2&gt;/dev/null || true; &quot;</span>
+        <span class="s1">&#39;la=$(git rev-list --count &quot;@</span><span class="si">{u}</span><span class="s1">..HEAD&quot; 2&gt;/dev/null || echo 0); &#39;</span>
+        <span class="s1">&#39;ra=$(git rev-list --count &quot;HEAD..@</span><span class="si">{u}</span><span class="s1">&quot; 2&gt;/dev/null || echo 0); &#39;</span>
+        <span class="s2">&quot;echo SACDEV_STATE la=$la ra=$ra&quot;</span>
+    <span class="p">)</span>
+    <span class="n">ssh_args</span> <span class="o">=</span> <span class="n">_build_ssh_args</span><span class="p">(</span><span class="n">host</span><span class="p">)</span>
+    <span class="n">ssh_args</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">remote_cmd</span><span class="p">)</span>
+    <span class="n">runner</span> <span class="o">=</span> <span class="n">subprocess_run</span> <span class="k">if</span> <span class="n">subprocess_run</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">runner</span><span class="p">(</span><span class="n">ssh_args</span><span class="p">,</span> <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">timeout</span><span class="o">=</span><span class="mi">60</span><span class="p">)</span>
+        <span class="n">stdout</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="ow">or</span> <span class="sa">f</span><span class="s2">&quot;exit </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">returncode</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">),</span>
+            <span class="p">}</span>
+        <span class="k">if</span> <span class="s2">&quot;SACDEV_MISSING&quot;</span> <span class="ow">in</span> <span class="n">stdout</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;missing&quot;</span><span class="p">}</span>
+        <span class="c1"># Parse: &quot;SACDEV_STATE la=X ra=Y&quot;</span>
+        <span class="n">la</span><span class="p">,</span> <span class="n">ra</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span>
+        <span class="k">for</span> <span class="n">tok</span> <span class="ow">in</span> <span class="n">stdout</span><span class="o">.</span><span class="n">split</span><span class="p">():</span>
+            <span class="k">if</span> <span class="n">tok</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;la=&quot;</span><span class="p">):</span>
+                <span class="n">la</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">tok</span><span class="p">[</span><span class="mi">3</span><span class="p">:]</span> <span class="ow">or</span> <span class="mi">0</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="n">tok</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;ra=&quot;</span><span class="p">):</span>
+                <span class="n">ra</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">tok</span><span class="p">[</span><span class="mi">3</span><span class="p">:]</span> <span class="ow">or</span> <span class="mi">0</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">la</span> <span class="o">&gt;</span> <span class="mi">0</span> <span class="ow">and</span> <span class="n">ra</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">status</span> <span class="o">=</span> <span class="s2">&quot;diverged&quot;</span>
+        <span class="k">elif</span> <span class="n">la</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">status</span> <span class="o">=</span> <span class="s2">&quot;ahead&quot;</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">status</span> <span class="o">=</span> <span class="s2">&quot;clean&quot;</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="n">status</span><span class="p">,</span> <span class="s2">&quot;local_ahead&quot;</span><span class="p">:</span> <span class="n">la</span><span class="p">,</span> <span class="s2">&quot;remote_ahead&quot;</span><span class="p">:</span> <span class="n">ra</span><span class="p">}</span>
+    <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">TimeoutExpired</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="s2">&quot;ahead-check SSH timed out (60s)&quot;</span><span class="p">}</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_sync_one_package</span><span class="p">(</span>
+    <span class="n">host</span><span class="p">:</span> <span class="n">HostConfig</span><span class="p">,</span>
+    <span class="n">dir_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">stash</span><span class="p">:</span> <span class="nb">bool</span><span class="p">,</span>
+    <span class="n">install</span><span class="p">:</span> <span class="nb">bool</span><span class="p">,</span>
+    <span class="n">safe</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">subprocess_run</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">check_ahead_state_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Sync a single package on a remote host.</span>
+
+<span class="sd">    When ``safe`` is True (default), first check whether the remote</span>
+<span class="sd">    working copy has unpushed commits; if so, skip to avoid clobbering.</span>
+<span class="sd">    This matches the user instruction: if remote is ahead, compare and</span>
+<span class="sd">    skip when a decision is unclear.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">check_ahead</span> <span class="o">=</span> <span class="p">(</span>
+        <span class="n">check_ahead_state_fn</span> <span class="k">if</span> <span class="n">check_ahead_state_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">_check_ahead_state</span>
+    <span class="p">)</span>
+    <span class="n">runner</span> <span class="o">=</span> <span class="n">subprocess_run</span> <span class="k">if</span> <span class="n">subprocess_run</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span>
+    <span class="k">if</span> <span class="n">safe</span><span class="p">:</span>
+        <span class="n">ahead</span> <span class="o">=</span> <span class="n">check_ahead</span><span class="p">(</span><span class="n">host</span><span class="p">,</span> <span class="n">dir_name</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">ahead</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="ow">in</span> <span class="p">{</span><span class="s2">&quot;ahead&quot;</span><span class="p">,</span> <span class="s2">&quot;diverged&quot;</span><span class="p">}:</span>
+            <span class="k">return</span> <span class="p">{</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;skipped_</span><span class="si">{</span><span class="n">ahead</span><span class="p">[</span><span class="s1">&#39;status&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;local_ahead&quot;</span><span class="p">:</span> <span class="n">ahead</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;local_ahead&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span>
+                <span class="s2">&quot;remote_ahead&quot;</span><span class="p">:</span> <span class="n">ahead</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;remote_ahead&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span>
+                <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="p">(</span>
+                    <span class="s2">&quot;remote working copy has unpushed commits; resolve manually &quot;</span>
+                    <span class="s2">&quot;(push / rebase / reset) then re-run sync&quot;</span>
+                <span class="p">),</span>
+            <span class="p">}</span>
+        <span class="k">if</span> <span class="n">ahead</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;missing&quot;</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;missing&quot;</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="s2">&quot;package dir not on remote&quot;</span><span class="p">}</span>
+        <span class="k">if</span> <span class="n">ahead</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">ahead</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;ahead-check failed&quot;</span><span class="p">),</span>
+            <span class="p">}</span>
+
+    <span class="n">cmds</span> <span class="o">=</span> <span class="n">_build_sync_commands</span><span class="p">(</span><span class="n">host</span><span class="p">,</span> <span class="n">dir_name</span><span class="p">,</span> <span class="n">stash</span><span class="p">,</span> <span class="n">install</span><span class="p">)</span>
+    <span class="n">remote_cmd</span> <span class="o">=</span> <span class="s2">&quot; &amp;&amp; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmds</span><span class="p">)</span>
+
+    <span class="n">ssh_args</span> <span class="o">=</span> <span class="n">_build_ssh_args</span><span class="p">(</span><span class="n">host</span><span class="p">)</span>
+    <span class="n">ssh_args</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">remote_cmd</span><span class="p">)</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">runner</span><span class="p">(</span><span class="n">ssh_args</span><span class="p">,</span> <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">timeout</span><span class="o">=</span><span class="mi">120</span><span class="p">)</span>
+        <span class="n">stdout</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="n">stderr</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span> <span class="s2">&quot;output&quot;</span><span class="p">:</span> <span class="n">stdout</span><span class="p">}</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;output&quot;</span><span class="p">:</span> <span class="n">stdout</span><span class="p">,</span>
+            <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">stderr</span> <span class="ow">or</span> <span class="sa">f</span><span class="s2">&quot;exit code </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">returncode</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+        <span class="p">}</span>
+    <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">TimeoutExpired</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;timeout&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="s2">&quot;SSH command timed out (120s)&quot;</span><span class="p">}</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Public API — all default to dry_run=True (safe preview)</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<div class="viewcode-block" id="sync_host">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.sync_host">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">sync_host</span><span class="p">(</span>
+    <span class="n">host</span><span class="p">:</span> <span class="n">HostConfig</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">stash</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">install</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">safe</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">host_packages_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Sync packages to a remote host via SSH.</span>
+
+<span class="sd">    Safety: defaults to preview only. Pass confirm=True to execute.</span>
+
+<span class="sd">    Steps per package: ahead-check (if safe), git stash, git pull,</span>
+<span class="sd">    pip install -e ., git stash pop.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    host : HostConfig</span>
+<span class="sd">        Target host configuration.</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names to sync. None = use host&#39;s configured packages.</span>
+<span class="sd">    stash : bool</span>
+<span class="sd">        Git stash before pull (default True).</span>
+<span class="sd">    install : bool</span>
+<span class="sd">        Pip install after pull (default True).</span>
+<span class="sd">    safe : bool</span>
+<span class="sd">        If True (default), pre-check each remote working copy and skip</span>
+<span class="sd">        packages whose HEAD is ahead of / diverged from upstream so we</span>
+<span class="sd">        never clobber unpushed commits.</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False (default), preview only (dry run).</span>
+<span class="sd">        If True, execute the sync operation.</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration. Loaded from default if None.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Per-package results: {package: {status, commands|output, error}}.</span>
+<span class="sd">        ``status`` includes ``ok``, ``skipped_ahead``, ``skipped_diverged``,</span>
+<span class="sd">        ``missing``, ``error``, ``timeout``, or ``dry_run``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="n">get_host_pkgs</span> <span class="o">=</span> <span class="p">(</span>
+        <span class="n">host_packages_fn</span> <span class="k">if</span> <span class="n">host_packages_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">_get_host_packages</span>
+    <span class="p">)</span>
+    <span class="n">host_pkgs</span> <span class="o">=</span> <span class="n">get_host_pkgs</span><span class="p">(</span><span class="n">host</span><span class="p">,</span> <span class="n">config</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="n">host_pkgs</span> <span class="o">=</span> <span class="p">[(</span><span class="n">n</span><span class="p">,</span> <span class="n">d</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span><span class="p">,</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">host_pkgs</span> <span class="k">if</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">]</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">confirm</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="n">name</span><span class="p">:</span> <span class="p">{</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;dry_run&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;commands&quot;</span><span class="p">:</span> <span class="n">_build_sync_commands</span><span class="p">(</span><span class="n">host</span><span class="p">,</span> <span class="n">dir_name</span><span class="p">,</span> <span class="n">stash</span><span class="p">,</span> <span class="n">install</span><span class="p">),</span>
+                <span class="s2">&quot;safe_check&quot;</span><span class="p">:</span> <span class="n">safe</span><span class="p">,</span>
+            <span class="p">}</span>
+            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">dir_name</span> <span class="ow">in</span> <span class="n">host_pkgs</span>
+        <span class="p">}</span>
+
+    <span class="c1"># Parallel package sync within a single host</span>
+    <span class="n">results</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">with</span> <span class="n">ThreadPoolExecutor</span><span class="p">(</span><span class="n">max_workers</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span> <span class="k">as</span> <span class="n">executor</span><span class="p">:</span>
+        <span class="n">futures</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="n">executor</span><span class="o">.</span><span class="n">submit</span><span class="p">(</span>
+                <span class="n">_sync_one_package</span><span class="p">,</span> <span class="n">host</span><span class="p">,</span> <span class="n">dir_name</span><span class="p">,</span> <span class="n">stash</span><span class="p">,</span> <span class="n">install</span><span class="p">,</span> <span class="n">safe</span>
+            <span class="p">):</span> <span class="n">name</span>
+            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">dir_name</span> <span class="ow">in</span> <span class="n">host_pkgs</span>
+        <span class="p">}</span>
+        <span class="k">for</span> <span class="n">future</span> <span class="ow">in</span> <span class="n">as_completed</span><span class="p">(</span><span class="n">futures</span><span class="p">):</span>
+            <span class="n">name</span> <span class="o">=</span> <span class="n">futures</span><span class="p">[</span><span class="n">future</span><span class="p">]</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">future</span><span class="o">.</span><span class="n">result</span><span class="p">()</span>
+            <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<div class="viewcode-block" id="sync_all">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.sync_all">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">sync_all</span><span class="p">(</span>
+    <span class="n">hosts</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">stash</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">install</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">safe</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">sync_host_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">enabled_hosts_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Sync packages across all enabled hosts.</span>
+
+<span class="sd">    Safety: defaults to preview only. Pass confirm=True to execute.</span>
+<span class="sd">    Parallel: hosts are synced concurrently by default.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    hosts : list[str] | None</span>
+<span class="sd">        Host names to sync. None = all enabled hosts.</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = host-specific defaults.</span>
+<span class="sd">    stash : bool</span>
+<span class="sd">        Git stash before pull.</span>
+<span class="sd">    install : bool</span>
+<span class="sd">        Pip install after pull.</span>
+<span class="sd">    safe : bool</span>
+<span class="sd">        If True (default), skip packages whose remote working copy is</span>
+<span class="sd">        ahead of / diverged from upstream (never clobber unpushed work).</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False (default), preview only (dry run).</span>
+<span class="sd">        If True, execute the sync operation.</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {host_name: {package: result}}.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="n">enabled_fn</span> <span class="o">=</span> <span class="n">enabled_hosts_fn</span> <span class="k">if</span> <span class="n">enabled_hosts_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">get_enabled_hosts</span>
+    <span class="n">do_sync_host</span> <span class="o">=</span> <span class="n">sync_host_fn</span> <span class="k">if</span> <span class="n">sync_host_fn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">sync_host</span>
+
+    <span class="n">enabled</span> <span class="o">=</span> <span class="n">enabled_fn</span><span class="p">(</span><span class="n">config</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">hosts</span><span class="p">:</span>
+        <span class="n">enabled</span> <span class="o">=</span> <span class="p">[</span><span class="n">h</span> <span class="k">for</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">enabled</span> <span class="k">if</span> <span class="n">h</span><span class="o">.</span><span class="n">name</span> <span class="ow">in</span> <span class="n">hosts</span><span class="p">]</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">confirm</span><span class="p">:</span>
+        <span class="c1"># Dry-run: no SSH needed, compute locally</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="n">host</span><span class="o">.</span><span class="n">name</span><span class="p">:</span> <span class="n">do_sync_host</span><span class="p">(</span>
+                <span class="n">host</span><span class="p">,</span>
+                <span class="n">packages</span><span class="o">=</span><span class="n">packages</span><span class="p">,</span>
+                <span class="n">stash</span><span class="o">=</span><span class="n">stash</span><span class="p">,</span>
+                <span class="n">install</span><span class="o">=</span><span class="n">install</span><span class="p">,</span>
+                <span class="n">safe</span><span class="o">=</span><span class="n">safe</span><span class="p">,</span>
+                <span class="n">confirm</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+                <span class="n">config</span><span class="o">=</span><span class="n">config</span><span class="p">,</span>
+            <span class="p">)</span>
+            <span class="k">for</span> <span class="n">host</span> <span class="ow">in</span> <span class="n">enabled</span>
+        <span class="p">}</span>
+
+    <span class="c1"># Execute: parallel across hosts</span>
+    <span class="n">results</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">with</span> <span class="n">ThreadPoolExecutor</span><span class="p">(</span><span class="n">max_workers</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="n">enabled</span><span class="p">)</span> <span class="ow">or</span> <span class="mi">1</span><span class="p">)</span> <span class="k">as</span> <span class="n">executor</span><span class="p">:</span>
+        <span class="n">futures</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="n">executor</span><span class="o">.</span><span class="n">submit</span><span class="p">(</span>
+                <span class="n">do_sync_host</span><span class="p">,</span>
+                <span class="n">host</span><span class="p">,</span>
+                <span class="n">packages</span><span class="o">=</span><span class="n">packages</span><span class="p">,</span>
+                <span class="n">stash</span><span class="o">=</span><span class="n">stash</span><span class="p">,</span>
+                <span class="n">install</span><span class="o">=</span><span class="n">install</span><span class="p">,</span>
+                <span class="n">safe</span><span class="o">=</span><span class="n">safe</span><span class="p">,</span>
+                <span class="n">confirm</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">config</span><span class="o">=</span><span class="n">config</span><span class="p">,</span>
+            <span class="p">):</span> <span class="n">host</span><span class="o">.</span><span class="n">name</span>
+            <span class="k">for</span> <span class="n">host</span> <span class="ow">in</span> <span class="n">enabled</span>
+        <span class="p">}</span>
+        <span class="k">for</span> <span class="n">future</span> <span class="ow">in</span> <span class="n">as_completed</span><span class="p">(</span><span class="n">futures</span><span class="p">):</span>
+            <span class="n">host_name</span> <span class="o">=</span> <span class="n">futures</span><span class="p">[</span><span class="n">future</span><span class="p">]</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">host_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">future</span><span class="o">.</span><span class="n">result</span><span class="p">()</span>
+            <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">host_name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_install_one</span><span class="p">(</span><span class="n">pkg</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Run `pip install -e &lt;path&gt;` for one package; return (name, result).&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="c1"># sys.executable -m pip — bare `pip` finds the first one on PATH,</span>
+        <span class="c1"># which can be a system Python with stale metadata (spartan&#39;s</span>
+        <span class="c1"># /usr/bin/pip is Python 3.9 and fails on &gt;=3.10 wheels).</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="n">sys</span><span class="o">.</span><span class="n">executable</span><span class="p">,</span> <span class="s2">&quot;-m&quot;</span><span class="p">,</span> <span class="s2">&quot;pip&quot;</span><span class="p">,</span> <span class="s2">&quot;install&quot;</span><span class="p">,</span> <span class="s2">&quot;-e&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="s2">&quot;-q&quot;</span><span class="p">],</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">300</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span> <span class="s2">&quot;output&quot;</span><span class="p">:</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()}</span>
+        <span class="k">return</span> <span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">()}</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+
+
+<div class="viewcode-block" id="sync_local">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.sync_local">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">sync_local</span><span class="p">(</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">jobs</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">1</span><span class="p">,</span>
+    <span class="n">on_progress</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Install all local editable packages.</span>
+
+<span class="sd">    Safety: defaults to preview only. Pass confirm=True to execute.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = all configured packages.</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False (default), preview only.</span>
+<span class="sd">        If True, execute pip install -e.</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration.</span>
+<span class="sd">    jobs : int</span>
+<span class="sd">        Parallel installs. 1 = serial (default). 0 or negative = all CPUs.</span>
+<span class="sd">    on_progress : callable | None</span>
+<span class="sd">        Optional callback ``f(idx, total, name, status, elapsed)`` invoked</span>
+<span class="sd">        as each package finishes.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {package: {status, output|commands}}.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">time</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">concurrent.futures</span><span class="w"> </span><span class="kn">import</span> <span class="n">ThreadPoolExecutor</span><span class="p">,</span> <span class="n">as_completed</span>
+
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="n">targets</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">packages</span>
+    <span class="k">if</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="n">targets</span> <span class="o">=</span> <span class="p">[</span><span class="n">p</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">targets</span> <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">name</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">]</span>
+
+    <span class="c1"># Resolve installable targets (skip missing-path early)</span>
+    <span class="n">work</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">tuple</span><span class="p">[</span><span class="n">Any</span><span class="p">,</span> <span class="n">Path</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">results</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">pkg</span> <span class="ow">in</span> <span class="n">targets</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">pkg</span><span class="o">.</span><span class="n">local_path</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">pkg</span><span class="o">.</span><span class="n">local_path</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;skipped&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2"> not found&quot;</span><span class="p">}</span>
+            <span class="k">continue</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">confirm</span><span class="p">:</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;dry_run&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;commands&quot;</span><span class="p">:</span> <span class="p">[</span>
+                    <span class="n">sys</span><span class="o">.</span><span class="n">executable</span><span class="p">,</span>
+                    <span class="s2">&quot;-m&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;pip&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;install&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;-e&quot;</span><span class="p">,</span>
+                    <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span>
+                    <span class="s2">&quot;-q&quot;</span><span class="p">,</span>
+                <span class="p">],</span>
+            <span class="p">}</span>
+            <span class="k">continue</span>
+        <span class="n">work</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">pkg</span><span class="p">,</span> <span class="n">path</span><span class="p">))</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">work</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">results</span>
+
+    <span class="c1"># Resolve --jobs</span>
+    <span class="k">if</span> <span class="n">jobs</span> <span class="o">&lt;=</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">jobs</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">cpu_count</span><span class="p">()</span> <span class="ow">or</span> <span class="mi">1</span>
+    <span class="n">jobs</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">min</span><span class="p">(</span><span class="n">jobs</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">work</span><span class="p">)))</span>
+
+    <span class="n">total</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">work</span><span class="p">)</span>
+    <span class="n">started</span> <span class="o">=</span> <span class="p">{</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">:</span> <span class="n">time</span><span class="o">.</span><span class="n">monotonic</span><span class="p">()</span> <span class="k">for</span> <span class="n">pkg</span><span class="p">,</span> <span class="n">_</span> <span class="ow">in</span> <span class="n">work</span><span class="p">}</span>
+
+    <span class="k">if</span> <span class="n">jobs</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+        <span class="c1"># Serial path — preserve deterministic ordering</span>
+        <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="n">pkg</span><span class="p">,</span> <span class="n">path</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">work</span><span class="p">,</span> <span class="mi">1</span><span class="p">):</span>
+            <span class="n">name</span><span class="p">,</span> <span class="n">res</span> <span class="o">=</span> <span class="n">_install_one</span><span class="p">(</span><span class="n">pkg</span><span class="p">,</span> <span class="n">path</span><span class="p">)</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span>
+            <span class="k">if</span> <span class="n">on_progress</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">on_progress</span><span class="p">(</span>
+                    <span class="n">idx</span><span class="p">,</span> <span class="n">total</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">res</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">],</span> <span class="n">time</span><span class="o">.</span><span class="n">monotonic</span><span class="p">()</span> <span class="o">-</span> <span class="n">started</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+                <span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="c1"># Parallel path — pip install -e is mostly I/O (git, PyPI metadata)</span>
+        <span class="k">with</span> <span class="n">ThreadPoolExecutor</span><span class="p">(</span><span class="n">max_workers</span><span class="o">=</span><span class="n">jobs</span><span class="p">)</span> <span class="k">as</span> <span class="n">ex</span><span class="p">:</span>
+            <span class="n">futures</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="n">ex</span><span class="o">.</span><span class="n">submit</span><span class="p">(</span><span class="n">_install_one</span><span class="p">,</span> <span class="n">pkg</span><span class="p">,</span> <span class="n">path</span><span class="p">):</span> <span class="n">pkg</span><span class="o">.</span><span class="n">name</span> <span class="k">for</span> <span class="n">pkg</span><span class="p">,</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">work</span>
+            <span class="p">}</span>
+            <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">fut</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">as_completed</span><span class="p">(</span><span class="n">futures</span><span class="p">),</span> <span class="mi">1</span><span class="p">):</span>
+                <span class="n">name</span><span class="p">,</span> <span class="n">res</span> <span class="o">=</span> <span class="n">fut</span><span class="o">.</span><span class="n">result</span><span class="p">()</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span>
+                <span class="k">if</span> <span class="n">on_progress</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">on_progress</span><span class="p">(</span>
+                        <span class="n">idx</span><span class="p">,</span>
+                        <span class="n">total</span><span class="p">,</span>
+                        <span class="n">name</span><span class="p">,</span>
+                        <span class="n">res</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">],</span>
+                        <span class="n">time</span><span class="o">.</span><span class="n">monotonic</span><span class="p">()</span> <span class="o">-</span> <span class="n">started</span><span class="p">[</span><span class="n">name</span><span class="p">],</span>
+                    <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
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+<li class="toctree-l1"><a class="reference internal" href="../../../installation.html">Installation</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
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+        </div>
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+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._sync._remote</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+             
+  <h1>Source code for scitex_dev._sync._remote</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-02-26</span>
+<span class="c1"># File: scitex_dev/sync_remote.py</span>
+
+<span class="sd">&quot;&quot;&quot;Reverse sync operations: remote -&gt; local.</span>
+
+<span class="sd">Complements sync.py (local -&gt; remote) with:</span>
+<span class="sd">  - remote_diff(): Show uncommitted changes on remote hosts</span>
+<span class="sd">  - remote_commit(): Commit + push dirty changes on remote hosts</span>
+<span class="sd">  - pull_local(): Pull origin -&gt; local repos</span>
+
+<span class="sd">Safety model (same as sync.py):</span>
+<span class="sd">  - All mutating operations default to confirm=False (preview only).</span>
+<span class="sd">  - Pass confirm=True to actually execute.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._core.config</span><span class="w"> </span><span class="kn">import</span> <span class="n">DevConfig</span><span class="p">,</span> <span class="n">HostConfig</span><span class="p">,</span> <span class="n">get_enabled_hosts</span><span class="p">,</span> <span class="n">load_config</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._local</span><span class="w"> </span><span class="kn">import</span> <span class="n">_build_ssh_args</span><span class="p">,</span> <span class="n">_get_host_packages</span>
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># SSH helper (filters X11 noise)</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_run_ssh</span><span class="p">(</span><span class="n">host</span><span class="p">:</span> <span class="n">HostConfig</span><span class="p">,</span> <span class="n">remote_cmd</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">120</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Run a single SSH command and return structured result.&quot;&quot;&quot;</span>
+    <span class="n">ssh_args</span> <span class="o">=</span> <span class="n">_build_ssh_args</span><span class="p">(</span><span class="n">host</span><span class="p">)</span>
+    <span class="n">ssh_args</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">remote_cmd</span><span class="p">)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="n">ssh_args</span><span class="p">,</span> <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">timeout</span><span class="o">=</span><span class="n">timeout</span>
+        <span class="p">)</span>
+        <span class="n">stdout</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="n">stderr</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="n">stderr_lines</span> <span class="o">=</span> <span class="p">[</span>
+            <span class="n">line</span> <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">stderr</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span> <span class="k">if</span> <span class="s2">&quot;X11 forwarding&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">line</span>
+        <span class="p">]</span>
+        <span class="n">stderr</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">stderr_lines</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span> <span class="s2">&quot;output&quot;</span><span class="p">:</span> <span class="n">stdout</span><span class="p">,</span> <span class="s2">&quot;stderr&quot;</span><span class="p">:</span> <span class="n">stderr</span><span class="p">}</span>
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;output&quot;</span><span class="p">:</span> <span class="n">stdout</span><span class="p">,</span>
+            <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">stderr</span> <span class="ow">or</span> <span class="sa">f</span><span class="s2">&quot;exit code </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">returncode</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+        <span class="p">}</span>
+    <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">TimeoutExpired</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;timeout&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;SSH command timed out (</span><span class="si">{</span><span class="n">timeout</span><span class="si">}</span><span class="s2">s)&quot;</span><span class="p">}</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Public API</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<div class="viewcode-block" id="remote_diff">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.remote_diff">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">remote_diff</span><span class="p">(</span>
+    <span class="n">host</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Show git diff on remote host(s). Read-only operation.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    host : str | None</span>
+<span class="sd">        Host name. None = first enabled host.</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = host-configured defaults.</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {host_name: {package: {status, files, diff_stat, diff}}}.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="n">enabled</span> <span class="o">=</span> <span class="n">get_enabled_hosts</span><span class="p">(</span><span class="n">config</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">host</span><span class="p">:</span>
+        <span class="n">enabled</span> <span class="o">=</span> <span class="p">[</span><span class="n">h</span> <span class="k">for</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">enabled</span> <span class="k">if</span> <span class="n">h</span><span class="o">.</span><span class="n">name</span> <span class="o">==</span> <span class="n">host</span><span class="p">]</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">enabled</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;Host &#39;</span><span class="si">{</span><span class="n">host</span><span class="si">}</span><span class="s2">&#39; not found or not enabled&quot;</span><span class="p">}</span>
+
+    <span class="n">results</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">enabled</span><span class="p">:</span>
+        <span class="n">host_pkgs</span> <span class="o">=</span> <span class="n">_get_host_packages</span><span class="p">(</span><span class="n">h</span><span class="p">,</span> <span class="n">config</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">packages</span><span class="p">:</span>
+            <span class="n">host_pkgs</span> <span class="o">=</span> <span class="p">[(</span><span class="n">n</span><span class="p">,</span> <span class="n">d</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span><span class="p">,</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">host_pkgs</span> <span class="k">if</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">]</span>
+
+        <span class="n">pkg_results</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">dir_name</span> <span class="ow">in</span> <span class="n">host_pkgs</span><span class="p">:</span>
+            <span class="n">base</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">h</span><span class="o">.</span><span class="n">remote_base</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">dir_name</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;cd </span><span class="si">{</span><span class="n">base</span><span class="si">}</span><span class="s2"> &amp;&amp; &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;echo &#39;---STATUS---&#39; &amp;&amp; git status --short &amp;&amp; &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;echo &#39;---STAT---&#39; &amp;&amp; git diff --stat &amp;&amp; &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;echo &#39;---DIFF---&#39; &amp;&amp; git diff&quot;</span>
+            <span class="p">)</span>
+            <span class="n">r</span> <span class="o">=</span> <span class="n">_run_ssh</span><span class="p">(</span><span class="n">h</span><span class="p">,</span> <span class="n">cmd</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;ok&quot;</span><span class="p">:</span>
+                <span class="n">output</span> <span class="o">=</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;output&quot;</span><span class="p">]</span>
+                <span class="n">parts</span> <span class="o">=</span> <span class="n">output</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;---DIFF---&quot;</span><span class="p">)</span>
+                <span class="n">header</span> <span class="o">=</span> <span class="n">parts</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">if</span> <span class="n">parts</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="n">diff</span> <span class="o">=</span> <span class="n">parts</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">parts</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+
+                <span class="n">stat_parts</span> <span class="o">=</span> <span class="n">header</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;---STAT---&quot;</span><span class="p">)</span>
+                <span class="n">status_text</span> <span class="o">=</span> <span class="p">(</span>
+                    <span class="n">stat_parts</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;---STATUS---&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+                    <span class="k">if</span> <span class="n">stat_parts</span>
+                    <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="p">)</span>
+                <span class="n">stat_text</span> <span class="o">=</span> <span class="n">stat_parts</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">stat_parts</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+
+                <span class="n">pkg_results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;dirty&quot;</span> <span class="k">if</span> <span class="n">status_text</span> <span class="k">else</span> <span class="s2">&quot;clean&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;files&quot;</span><span class="p">:</span> <span class="n">status_text</span><span class="p">,</span>
+                    <span class="s2">&quot;diff_stat&quot;</span><span class="p">:</span> <span class="n">stat_text</span><span class="p">,</span>
+                    <span class="s2">&quot;diff&quot;</span><span class="p">:</span> <span class="n">diff</span><span class="p">,</span>
+                <span class="p">}</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">pkg_results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">r</span>
+        <span class="n">results</span><span class="p">[</span><span class="n">h</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">pkg_results</span>
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<div class="viewcode-block" id="remote_commit">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.remote_commit">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">remote_commit</span><span class="p">(</span>
+    <span class="n">host</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">message</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">push</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Commit dirty changes on a remote host and optionally push to origin.</span>
+
+<span class="sd">    Safety: defaults to preview only. Pass confirm=True to execute.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    host : str</span>
+<span class="sd">        Host name (required).</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = host-configured defaults.</span>
+<span class="sd">    message : str | None</span>
+<span class="sd">        Commit message. Auto-generated if not provided.</span>
+<span class="sd">    push : bool</span>
+<span class="sd">        Push to origin after commit (default True).</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False (default), preview only (dry run).</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {package: {status, commands|output}}.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="n">enabled</span> <span class="o">=</span> <span class="n">get_enabled_hosts</span><span class="p">(</span><span class="n">config</span><span class="p">)</span>
+    <span class="n">target</span> <span class="o">=</span> <span class="nb">next</span><span class="p">((</span><span class="n">h</span> <span class="k">for</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">enabled</span> <span class="k">if</span> <span class="n">h</span><span class="o">.</span><span class="n">name</span> <span class="o">==</span> <span class="n">host</span><span class="p">),</span> <span class="kc">None</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">target</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;Host &#39;</span><span class="si">{</span><span class="n">host</span><span class="si">}</span><span class="s2">&#39; not found or not enabled&quot;</span><span class="p">}</span>
+
+    <span class="n">host_pkgs</span> <span class="o">=</span> <span class="n">_get_host_packages</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="n">config</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="n">host_pkgs</span> <span class="o">=</span> <span class="p">[(</span><span class="n">n</span><span class="p">,</span> <span class="n">d</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span><span class="p">,</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">host_pkgs</span> <span class="k">if</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">]</span>
+
+    <span class="n">results</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">dir_name</span> <span class="ow">in</span> <span class="n">host_pkgs</span><span class="p">:</span>
+        <span class="n">base</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">target</span><span class="o">.</span><span class="n">remote_base</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">dir_name</span><span class="si">}</span><span class="s2">&quot;</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">confirm</span><span class="p">:</span>
+            <span class="n">cmd</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;cd </span><span class="si">{</span><span class="n">base</span><span class="si">}</span><span class="s2"> &amp;&amp; git status --short&quot;</span>
+            <span class="n">r</span> <span class="o">=</span> <span class="n">_run_ssh</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="n">cmd</span><span class="p">)</span>
+            <span class="n">dirty_files</span> <span class="o">=</span> <span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;output&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">if</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;ok&quot;</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">dirty_files</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;clean&quot;</span><span class="p">,</span> <span class="s2">&quot;message&quot;</span><span class="p">:</span> <span class="s2">&quot;nothing to commit&quot;</span><span class="p">}</span>
+                <span class="k">continue</span>
+
+            <span class="n">msg</span> <span class="o">=</span> <span class="n">message</span> <span class="ow">or</span> <span class="sa">f</span><span class="s2">&quot;chore(</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">): sync from </span><span class="si">{</span><span class="n">host</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">commit_cmds</span> <span class="o">=</span> <span class="p">[</span><span class="sa">f</span><span class="s2">&quot;cd </span><span class="si">{</span><span class="n">base</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="s2">&quot;git add -A&quot;</span><span class="p">,</span> <span class="sa">f</span><span class="s1">&#39;git commit -m &quot;</span><span class="si">{</span><span class="n">msg</span><span class="si">}</span><span class="s1">&quot;&#39;</span><span class="p">]</span>
+            <span class="k">if</span> <span class="n">push</span><span class="p">:</span>
+                <span class="n">commit_cmds</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;git push origin $(git rev-parse --abbrev-ref HEAD)&quot;</span><span class="p">)</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;dry_run&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;dirty_files&quot;</span><span class="p">:</span> <span class="n">dirty_files</span><span class="p">,</span>
+                <span class="s2">&quot;commands&quot;</span><span class="p">:</span> <span class="n">commit_cmds</span><span class="p">,</span>
+            <span class="p">}</span>
+            <span class="k">continue</span>
+
+        <span class="c1"># Execute: check if dirty first</span>
+        <span class="n">status_r</span> <span class="o">=</span> <span class="n">_run_ssh</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;cd </span><span class="si">{</span><span class="n">base</span><span class="si">}</span><span class="s2"> &amp;&amp; git status --short&quot;</span><span class="p">)</span>
+        <span class="n">dirty</span> <span class="o">=</span> <span class="n">status_r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;output&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">if</span> <span class="n">status_r</span><span class="p">[</span><span class="s2">&quot;status&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;ok&quot;</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">dirty</span><span class="p">:</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;clean&quot;</span><span class="p">,</span> <span class="s2">&quot;message&quot;</span><span class="p">:</span> <span class="s2">&quot;nothing to commit&quot;</span><span class="p">}</span>
+            <span class="k">continue</span>
+
+        <span class="n">msg</span> <span class="o">=</span> <span class="n">message</span> <span class="ow">or</span> <span class="sa">f</span><span class="s2">&quot;chore(</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">): sync from </span><span class="si">{</span><span class="n">host</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="n">cmds</span> <span class="o">=</span> <span class="p">[</span><span class="sa">f</span><span class="s2">&quot;cd </span><span class="si">{</span><span class="n">base</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="s2">&quot;git add -A&quot;</span><span class="p">,</span> <span class="sa">f</span><span class="s1">&#39;git commit -m &quot;</span><span class="si">{</span><span class="n">msg</span><span class="si">}</span><span class="s1">&quot;&#39;</span><span class="p">]</span>
+        <span class="k">if</span> <span class="n">push</span><span class="p">:</span>
+            <span class="n">cmds</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;git push origin $(git rev-parse --abbrev-ref HEAD)&quot;</span><span class="p">)</span>
+        <span class="n">results</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_run_ssh</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="s2">&quot; &amp;&amp; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmds</span><span class="p">))</span>
+
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<div class="viewcode-block" id="pull_local">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.pull_local">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">pull_local</span><span class="p">(</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">stash</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Pull latest from origin to local repos.</span>
+
+<span class="sd">    Safety: defaults to preview only. Pass confirm=True to execute.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = all configured packages.</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False (default), preview only.</span>
+<span class="sd">    stash : bool</span>
+<span class="sd">        If True (default), stash local changes before pull and pop after.</span>
+<span class="sd">        If False and repo is dirty, pull proceeds as-is (may fail).</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {package: {status, output|commands, stashed}}.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="n">targets</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">packages</span>
+    <span class="k">if</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="n">targets</span> <span class="o">=</span> <span class="p">[</span><span class="n">p</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">targets</span> <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">name</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">]</span>
+
+    <span class="n">results</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">pkg</span> <span class="ow">in</span> <span class="n">targets</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">pkg</span><span class="o">.</span><span class="n">local_path</span><span class="p">:</span>
+            <span class="k">continue</span>
+
+        <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">pkg</span><span class="o">.</span><span class="n">local_path</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;skipped&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2"> not found&quot;</span><span class="p">}</span>
+            <span class="k">continue</span>
+
+        <span class="c1"># Check if repo is dirty</span>
+        <span class="n">status_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;-C&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="s2">&quot;status&quot;</span><span class="p">,</span> <span class="s2">&quot;--porcelain&quot;</span><span class="p">],</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="n">is_dirty</span> <span class="o">=</span> <span class="nb">bool</span><span class="p">(</span><span class="n">status_result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">confirm</span><span class="p">:</span>
+            <span class="n">entry</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;dry_run&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;commands&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;-C&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="s2">&quot;pull&quot;</span><span class="p">,</span> <span class="s2">&quot;origin&quot;</span><span class="p">],</span>
+            <span class="p">}</span>
+            <span class="k">if</span> <span class="n">is_dirty</span><span class="p">:</span>
+                <span class="n">entry</span><span class="p">[</span><span class="s2">&quot;dirty&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+                <span class="k">if</span> <span class="n">stash</span><span class="p">:</span>
+                    <span class="n">entry</span><span class="p">[</span><span class="s2">&quot;note&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;repo is dirty; would stash before pull&quot;</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span>
+            <span class="k">continue</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">did_stash</span> <span class="o">=</span> <span class="kc">False</span>
+            <span class="k">if</span> <span class="n">is_dirty</span> <span class="ow">and</span> <span class="n">stash</span><span class="p">:</span>
+                <span class="n">stash_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+                    <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;-C&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="s2">&quot;stash&quot;</span><span class="p">],</span>
+                    <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                    <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                    <span class="n">timeout</span><span class="o">=</span><span class="mi">30</span><span class="p">,</span>
+                <span class="p">)</span>
+                <span class="k">if</span> <span class="n">stash_result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+                    <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                        <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">stash_result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="ow">or</span> <span class="s2">&quot;git stash failed&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;stashed&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+                    <span class="p">}</span>
+                    <span class="k">continue</span>
+                <span class="n">did_stash</span> <span class="o">=</span> <span class="kc">True</span>
+
+            <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+                <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;-C&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="s2">&quot;pull&quot;</span><span class="p">,</span> <span class="s2">&quot;origin&quot;</span><span class="p">],</span>
+                <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">timeout</span><span class="o">=</span><span class="mi">60</span><span class="p">,</span>
+            <span class="p">)</span>
+            <span class="n">stdout</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+            <span class="n">stderr</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+            <span class="n">stderr_lines</span> <span class="o">=</span> <span class="p">[</span>
+                <span class="n">line</span> <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">stderr</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span> <span class="k">if</span> <span class="s2">&quot;X11 forwarding&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">line</span>
+            <span class="p">]</span>
+            <span class="n">stderr</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">stderr_lines</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+
+            <span class="k">if</span> <span class="n">did_stash</span><span class="p">:</span>
+                <span class="n">pop_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+                    <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;-C&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="s2">&quot;stash&quot;</span><span class="p">,</span> <span class="s2">&quot;pop&quot;</span><span class="p">],</span>
+                    <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                    <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                    <span class="n">timeout</span><span class="o">=</span><span class="mi">30</span><span class="p">,</span>
+                <span class="p">)</span>
+                <span class="k">if</span> <span class="n">pop_result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+                    <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                        <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;stash_conflict&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;output&quot;</span><span class="p">:</span> <span class="n">stdout</span> <span class="ow">or</span> <span class="n">stderr</span><span class="p">,</span>
+                        <span class="s2">&quot;stashed&quot;</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
+                        <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">pop_result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+                        <span class="ow">or</span> <span class="s2">&quot;git stash pop failed; resolve conflicts manually&quot;</span><span class="p">,</span>
+                    <span class="p">}</span>
+                    <span class="k">continue</span>
+
+            <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;output&quot;</span><span class="p">:</span> <span class="n">stdout</span> <span class="ow">or</span> <span class="n">stderr</span><span class="p">,</span>
+                    <span class="s2">&quot;stashed&quot;</span><span class="p">:</span> <span class="n">did_stash</span><span class="p">,</span>
+                <span class="p">}</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">stderr</span> <span class="ow">or</span> <span class="sa">f</span><span class="s2">&quot;exit code </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">returncode</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;stashed&quot;</span><span class="p">:</span> <span class="n">did_stash</span><span class="p">,</span>
+                <span class="p">}</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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new file mode 100644
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_dev._sync._tags</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+             
+  <h1>Source code for scitex_dev._sync._tags</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: 2026-04-27</span>
+<span class="c1"># File: scitex_dev/sync_tags.py</span>
+
+<span class="sd">&quot;&quot;&quot;Push local git tags for ecosystem packages to origin.</span>
+
+<span class="sd">Extracted from ``sync.py`` to keep that module under the line-limit.</span>
+<span class="sd">``scitex_dev.sync`` re-exports ``sync_tags`` for backward compat.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._core.config</span><span class="w"> </span><span class="kn">import</span> <span class="n">DevConfig</span><span class="p">,</span> <span class="n">load_config</span>
+
+
+<div class="viewcode-block" id="sync_tags">
+<a class="viewcode-back" href="../../../source/api/dev.html#scitex.dev.sync_tags">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">sync_tags</span><span class="p">(</span>
+    <span class="n">packages</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">confirm</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">config</span><span class="p">:</span> <span class="n">DevConfig</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Push local tags for all packages to origin.</span>
+
+<span class="sd">    Safety: defaults to preview only. Pass confirm=True to execute.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    packages : list[str] | None</span>
+<span class="sd">        Package names. None = all configured packages.</span>
+<span class="sd">    confirm : bool</span>
+<span class="sd">        If False (default), preview only.</span>
+<span class="sd">        If True, execute git push --tags.</span>
+<span class="sd">    config : DevConfig | None</span>
+<span class="sd">        Configuration.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        {package: {status, tag, output|commands}}.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">config</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+
+    <span class="n">targets</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">packages</span>
+    <span class="k">if</span> <span class="n">packages</span><span class="p">:</span>
+        <span class="n">targets</span> <span class="o">=</span> <span class="p">[</span><span class="n">p</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">targets</span> <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">name</span> <span class="ow">in</span> <span class="n">packages</span><span class="p">]</span>
+
+    <span class="n">results</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">pkg</span> <span class="ow">in</span> <span class="n">targets</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">pkg</span><span class="o">.</span><span class="n">local_path</span><span class="p">:</span>
+            <span class="k">continue</span>
+
+        <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">pkg</span><span class="o">.</span><span class="n">local_path</span><span class="p">)</span><span class="o">.</span><span class="n">expanduser</span><span class="p">()</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;skipped&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2"> not found&quot;</span><span class="p">}</span>
+            <span class="k">continue</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">tag_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+                <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;describe&quot;</span><span class="p">,</span> <span class="s2">&quot;--tags&quot;</span><span class="p">,</span> <span class="s2">&quot;--abbrev=0&quot;</span><span class="p">],</span>
+                <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">cwd</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span>
+                <span class="n">timeout</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
+            <span class="p">)</span>
+            <span class="n">tag</span> <span class="o">=</span> <span class="n">tag_result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">if</span> <span class="n">tag_result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span> <span class="k">else</span> <span class="kc">None</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">confirm</span><span class="p">:</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;dry_run&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;tag&quot;</span><span class="p">:</span> <span class="n">tag</span><span class="p">,</span>
+                <span class="s2">&quot;commands&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;push&quot;</span><span class="p">,</span> <span class="s2">&quot;origin&quot;</span><span class="p">,</span> <span class="s2">&quot;--tags&quot;</span><span class="p">],</span>
+            <span class="p">}</span>
+            <span class="k">continue</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">push_result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+                <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;push&quot;</span><span class="p">,</span> <span class="s2">&quot;origin&quot;</span><span class="p">,</span> <span class="s2">&quot;--tags&quot;</span><span class="p">],</span>
+                <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">cwd</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span>
+                <span class="n">timeout</span><span class="o">=</span><span class="mi">30</span><span class="p">,</span>
+            <span class="p">)</span>
+            <span class="k">if</span> <span class="n">push_result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;ok&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;tag&quot;</span><span class="p">:</span> <span class="n">tag</span><span class="p">,</span>
+                    <span class="s2">&quot;output&quot;</span><span class="p">:</span> <span class="n">push_result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">(),</span>
+                <span class="p">}</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;tag&quot;</span><span class="p">:</span> <span class="n">tag</span><span class="p">,</span>
+                    <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">push_result</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">strip</span><span class="p">(),</span>
+                <span class="p">}</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">pkg</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)}</span>
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_etc/_grid.html b/src/scitex/_sphinx_html/_modules/scitex_etc/_grid.html
new file mode 100644
index 000000000..ecec4387c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_etc/_grid.html
@@ -0,0 +1,740 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_etc._grid &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
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+      <li class="breadcrumb-item active">scitex_etc._grid</li>
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+  <h1>Source code for scitex_etc._grid</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># File: src/scitex_etc/_grid.py</span>
+
+<span class="sd">&quot;&quot;&quot;Combinatorial parameter-grid iteration helpers.</span>
+
+<span class="sd">Generic utilities for parameter sweeps: count the number of combinations in a</span>
+<span class="sd">grid and yield each combination as a dict. No domain ties — pure stdlib.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">itertools</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_itertools</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">random</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_random</span>
+
+
+<div class="viewcode-block" id="yield_grids">
+<a class="viewcode-back" href="../../source/api/etc.html#scitex.etc.yield_grids">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">yield_grids</span><span class="p">(</span><span class="n">params_grid</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">random</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Yield every parameter combination from a grid as a dict.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    params_grid : dict</span>
+<span class="sd">        Mapping of parameter name -&gt; list of candidate values.</span>
+<span class="sd">    random : bool, optional</span>
+<span class="sd">        If True, yield the combinations in shuffled order (default False).</span>
+
+<span class="sd">    Yields</span>
+<span class="sd">    ------</span>
+<span class="sd">    dict</span>
+<span class="sd">        One combination, mapping each parameter name to a single value.</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; grid = {&quot;a&quot;: [1, 2], &quot;b&quot;: [&quot;x&quot;, &quot;y&quot;]}</span>
+<span class="sd">    &gt;&gt;&gt; list(yield_grids(grid))</span>
+<span class="sd">    [{&#39;a&#39;: 1, &#39;b&#39;: &#39;x&#39;}, {&#39;a&#39;: 1, &#39;b&#39;: &#39;y&#39;}, {&#39;a&#39;: 2, &#39;b&#39;: &#39;x&#39;}, {&#39;a&#39;: 2, &#39;b&#39;: &#39;y&#39;}]</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">combinations</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">_itertools</span><span class="o">.</span><span class="n">product</span><span class="p">(</span><span class="o">*</span><span class="n">params_grid</span><span class="o">.</span><span class="n">values</span><span class="p">()))</span>
+    <span class="k">if</span> <span class="n">random</span><span class="p">:</span>
+        <span class="n">_random</span><span class="o">.</span><span class="n">shuffle</span><span class="p">(</span><span class="n">combinations</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">values</span> <span class="ow">in</span> <span class="n">combinations</span><span class="p">:</span>
+        <span class="k">yield</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">params_grid</span><span class="o">.</span><span class="n">keys</span><span class="p">(),</span> <span class="n">values</span><span class="p">))</span></div>
+
+
+
+<div class="viewcode-block" id="count_grids">
+<a class="viewcode-back" href="../../source/api/etc.html#scitex.etc.count_grids">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">count_grids</span><span class="p">(</span><span class="n">params_grid</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the total number of combinations in a parameter grid.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    params_grid : dict</span>
+<span class="sd">        Mapping of parameter name -&gt; list of candidate values.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    int</span>
+<span class="sd">        Product of the lengths of all value lists.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">num_combinations</span> <span class="o">=</span> <span class="mi">1</span>
+    <span class="k">for</span> <span class="n">values</span> <span class="ow">in</span> <span class="n">params_grid</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
+        <span class="n">num_combinations</span> <span class="o">*=</span> <span class="nb">len</span><span class="p">(</span><span class="n">values</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">num_combinations</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_etc._search</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_etc._search</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># File: src/scitex_etc/_search.py</span>
+
+<span class="sd">&quot;&quot;&quot;Regex pattern search over collections of strings.</span>
+
+<span class="sd">Generic cross-cutting helper. Stdlib-only at runtime: numpy, pandas, xarray and</span>
+<span class="sd">natsort are all *optional* — when present, their array/series types are accepted</span>
+<span class="sd">as inputs and natural sort ordering is used; otherwise plain lists and the</span>
+<span class="sd">builtin ``sorted`` are used.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">collections</span><span class="w"> </span><span class="kn">import</span> <span class="n">abc</span>
+
+<span class="k">try</span><span class="p">:</span>  <span class="c1"># optional — natural sort ordering when available</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">natsort</span><span class="w"> </span><span class="kn">import</span> <span class="n">natsorted</span> <span class="k">as</span> <span class="n">_natsorted</span>
+<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>  <span class="c1"># pragma: no cover — fallback path</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_natsorted</span><span class="p">(</span><span class="n">iterable</span><span class="p">):</span>
+        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">iterable</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_to_list</span><span class="p">(</span><span class="n">string_or_pattern</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Coerce assorted string containers into a plain list of strings.&quot;&quot;&quot;</span>
+    <span class="c1"># numpy arrays (optional dependency)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_np</span>
+
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">string_or_pattern</span><span class="p">,</span> <span class="n">_np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">string_or_pattern</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="c1"># pandas Series / Index (optional dependency)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_pd</span>
+
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">string_or_pattern</span><span class="p">,</span> <span class="p">(</span><span class="n">_pd</span><span class="o">.</span><span class="n">Series</span><span class="p">,</span> <span class="n">_pd</span><span class="o">.</span><span class="n">Index</span><span class="p">)):</span>
+            <span class="k">return</span> <span class="n">string_or_pattern</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="c1"># xarray DataArray (optional, lazy to avoid atexit hang issues)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">xarray</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_xr</span>
+
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">string_or_pattern</span><span class="p">,</span> <span class="n">_xr</span><span class="o">.</span><span class="n">DataArray</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">string_or_pattern</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="k">pass</span>
+
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">string_or_pattern</span><span class="p">,</span> <span class="n">abc</span><span class="o">.</span><span class="n">KeysView</span><span class="p">):</span>
+        <span class="k">return</span> <span class="nb">list</span><span class="p">(</span><span class="n">string_or_pattern</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">string_or_pattern</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">)):</span>
+        <span class="k">return</span> <span class="p">[</span><span class="n">string_or_pattern</span><span class="p">]</span>
+    <span class="k">return</span> <span class="n">string_or_pattern</span>
+
+
+<div class="viewcode-block" id="search">
+<a class="viewcode-back" href="../../source/api/etc.html#scitex.etc.search">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">search</span><span class="p">(</span>
+    <span class="n">patterns</span><span class="p">,</span>
+    <span class="n">strings</span><span class="p">,</span>
+    <span class="n">only_perfect_match</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">as_bool</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">ensure_one</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Search for patterns in strings using regular expressions.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    patterns : str or list of str</span>
+<span class="sd">        The pattern(s) to search for. A single string or a list of strings.</span>
+<span class="sd">    strings : str or list of str</span>
+<span class="sd">        The string(s) to search in. A single string or a list of strings.</span>
+<span class="sd">    only_perfect_match : bool, optional</span>
+<span class="sd">        If True, only exact matches are considered (default False).</span>
+<span class="sd">    as_bool : bool, optional</span>
+<span class="sd">        If True, return a boolean mask instead of indices (default False).</span>
+<span class="sd">    ensure_one : bool, optional</span>
+<span class="sd">        If True, assert exactly one match is found (default False).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    tuple</span>
+<span class="sd">        - If ``as_bool`` is False: ``(indices, matched_strings)`` where</span>
+<span class="sd">          ``indices`` is a list of int positions of matches.</span>
+<span class="sd">        - If ``as_bool`` is True: ``(mask, matched_strings)`` where ``mask`` is</span>
+<span class="sd">          a boolean sequence (numpy array when numpy is installed, else a list)</span>
+<span class="sd">          flagging matched positions.</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; patterns = [&#39;orange&#39;, &#39;banana&#39;]</span>
+<span class="sd">    &gt;&gt;&gt; strings = [&#39;apple&#39;, &#39;orange&#39;, &#39;apple&#39;, &#39;apple_juice&#39;, &#39;banana&#39;, &#39;orange_juice&#39;]</span>
+<span class="sd">    &gt;&gt;&gt; search(patterns, strings)</span>
+<span class="sd">    ([1, 4, 5], [&#39;orange&#39;, &#39;banana&#39;, &#39;orange_juice&#39;])</span>
+
+<span class="sd">    &gt;&gt;&gt; search(&#39;orange&#39;, strings)</span>
+<span class="sd">    ([1, 5], [&#39;orange&#39;, &#39;orange_juice&#39;])</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">patterns</span> <span class="o">=</span> <span class="n">_to_list</span><span class="p">(</span><span class="n">patterns</span><span class="p">)</span>
+    <span class="n">strings</span> <span class="o">=</span> <span class="n">_to_list</span><span class="p">(</span><span class="n">strings</span><span class="p">)</span>
+
+    <span class="n">indices_matched</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">pattern</span> <span class="ow">in</span> <span class="n">patterns</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">index_str</span><span class="p">,</span> <span class="n">string</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">strings</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">only_perfect_match</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">pattern</span> <span class="o">==</span> <span class="n">string</span><span class="p">:</span>
+                    <span class="n">indices_matched</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">index_str</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">string</span><span class="p">):</span>
+                    <span class="n">indices_matched</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">index_str</span><span class="p">)</span>
+
+    <span class="n">indices_matched</span> <span class="o">=</span> <span class="n">_natsorted</span><span class="p">(</span><span class="n">indices_matched</span><span class="p">)</span>
+    <span class="n">keys_matched</span> <span class="o">=</span> <span class="p">[</span><span class="n">strings</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices_matched</span><span class="p">]</span>
+
+    <span class="k">if</span> <span class="n">ensure_one</span><span class="p">:</span>
+        <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">indices_matched</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">,</span> <span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Expected exactly one match, but found </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">indices_matched</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">as_bool</span><span class="p">:</span>
+        <span class="n">unique_indices</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">indices_matched</span><span class="p">))</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_np</span>
+
+            <span class="n">bool_matched</span> <span class="o">=</span> <span class="n">_np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">strings</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">bool</span><span class="p">)</span>
+            <span class="n">bool_matched</span><span class="p">[</span><span class="n">unique_indices</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+        <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+            <span class="n">bool_matched</span> <span class="o">=</span> <span class="p">[</span><span class="kc">False</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">strings</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">unique_indices</span><span class="p">:</span>
+                <span class="n">bool_matched</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+        <span class="k">return</span> <span class="n">bool_matched</span><span class="p">,</span> <span class="n">keys_matched</span>
+
+    <span class="k">return</span> <span class="n">indices_matched</span><span class="p">,</span> <span class="n">keys_matched</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_etc/wait_key.html b/src/scitex/_sphinx_html/_modules/scitex_etc/wait_key.html
new file mode 100644
index 000000000..ae7f8c5f3
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_etc/wait_key.html
@@ -0,0 +1,736 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_etc.wait_key</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_etc.wait_key</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># File: src/scitex_etc/wait_key.py</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">multiprocessing</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">time</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">readchar</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">wait_key</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="o">*</span><span class="p">,</span> <span class="n">read_key</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">printer</span><span class="o">=</span><span class="nb">print</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Block until the user presses ``q``, then terminate process ``p``.</span>
+
+<span class="sd">    Echoes each key as it is pressed; on ``q`` prints a notice and calls</span>
+<span class="sd">    ``p.terminate()``.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    p</span>
+<span class="sd">        A process-like object exposing ``terminate()``.</span>
+<span class="sd">    read_key : callable, optional</span>
+<span class="sd">        Zero-arg callable returning the next key as a string. Defaults to</span>
+<span class="sd">        ``readchar.readchar``. Injectable as a test seam (no mocks).</span>
+<span class="sd">    printer : callable, optional</span>
+<span class="sd">        Output sink, defaults to the builtin ``print``. Injectable so tests</span>
+<span class="sd">        can record output without patching ``builtins.print``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">read_key</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">read_key</span> <span class="o">=</span> <span class="n">readchar</span><span class="o">.</span><span class="n">readchar</span>
+    <span class="n">key</span> <span class="o">=</span> <span class="s2">&quot;x&quot;</span>
+    <span class="k">while</span> <span class="n">key</span> <span class="o">!=</span> <span class="s2">&quot;q&quot;</span><span class="p">:</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">read_key</span><span class="p">()</span>
+        <span class="n">printer</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+    <span class="n">printer</span><span class="p">(</span><span class="s2">&quot;q was pressed.&quot;</span><span class="p">)</span>
+    <span class="n">p</span><span class="o">.</span><span class="n">terminate</span><span class="p">()</span>
+
+
+<div class="viewcode-block" id="count">
+<a class="viewcode-back" href="../../source/api/etc.html#scitex.etc.count">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">count</span><span class="p">(</span><span class="o">*</span><span class="p">,</span> <span class="n">printer</span><span class="o">=</span><span class="nb">print</span><span class="p">,</span> <span class="n">sleeper</span><span class="o">=</span><span class="n">time</span><span class="o">.</span><span class="n">sleep</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Print an incrementing counter forever, sleeping 1s between values.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    printer : callable, optional</span>
+<span class="sd">        Output sink, defaults to the builtin ``print``. Injectable test seam.</span>
+<span class="sd">    sleeper : callable, optional</span>
+<span class="sd">        One-arg sleep callable, defaults to ``time.sleep``. Injectable so</span>
+<span class="sd">        tests can run without real delay and bound the loop.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
+    <span class="k">while</span> <span class="kc">True</span><span class="p">:</span>
+        <span class="n">printer</span><span class="p">(</span><span class="n">counter</span><span class="p">)</span>
+        <span class="n">sleeper</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+        <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span></div>
+
+
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="n">p1</span> <span class="o">=</span> <span class="n">multiprocessing</span><span class="o">.</span><span class="n">Process</span><span class="p">(</span><span class="n">target</span><span class="o">=</span><span class="n">count</span><span class="p">)</span>
+
+    <span class="n">p1</span><span class="o">.</span><span class="n">start</span><span class="p">()</span>
+    <span class="n">wait_key</span><span class="p">(</span><span class="n">p1</span><span class="p">)</span>
+    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;aaa&quot;</span><span class="p">)</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_gists/_SigMacro_processFigure_S.html b/src/scitex/_sphinx_html/_modules/scitex_gists/_SigMacro_processFigure_S.html
new file mode 100644
index 000000000..68b7ec425
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_gists/_SigMacro_processFigure_S.html
@@ -0,0 +1,805 @@
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_gists._SigMacro_processFigure_S</li>
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+             
+  <h1>Source code for scitex_gists._SigMacro_processFigure_S</h1><div class="highlight"><pre>
+<div class="viewcode-block" id="sigmacro_process_figure_s">
+<a class="viewcode-back" href="../../source/api/gists.html#scitex.gists.sigmacro_process_figure_s">[docs]</a>
+<span></span><span class="k">def</span><span class="w"> </span><span class="nf">sigmacro_process_figure_s</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Print a macro for SigmaPlot (v12.0) to format a panel.</span>
+
+<span class="sd">    Please refer to the &#39;Automating Routine Tasks&#39; section of the official documentation.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="nb">print</span><span class="p">(</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Option Explicit</span>
+
+<span class="sd">&#39; Constants for FLAG_SET_BIT and FLAG_CLEAR_BIT should be defined</span>
+<span class="sd">Const FLAG_SET_BIT As Long = 1 &#39; Assuming value, replace with actual value</span>
+<span class="sd">Const FLAG_CLEAR_BIT As Long = 0 &#39; Assuming value, replace with actual value</span>
+
+<span class="sd">&#39; Function to set option flag bits on</span>
+<span class="sd">Function FlagOn(flag As Long) As Long</span>
+<span class="sd">    FlagOn = flag Or FLAG_SET_BIT</span>
+<span class="sd">End Function</span>
+
+<span class="sd">&#39; Function to set option flag bits off</span>
+<span class="sd">Function FlagOff(flag As Long) As Long</span>
+<span class="sd">    FlagOff = flag And Not FLAG_CLEAR_BIT</span>
+<span class="sd">End Function</span>
+
+<span class="sd">&#39; Procedure to set the title size to 8 points</span>
+<span class="sd">Sub setTitleSize()</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH).NameObject.SetObjectCurrent</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETOBJECTATTR, STA_SIZE, &quot;111&quot;) &#39; Size set to 8 points</span>
+<span class="sd">End Sub</span>
+
+<span class="sd">&#39; Procedure to set label size for a given dimension to 8 points</span>
+<span class="sd">Sub setLabelSize(dimension)</span>
+<span class="sd">    &#39; ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH).NameObject.SetObjectCurrent</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_AXIS).NameObject.SetObjectCurrent</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SLA_SELECTDIM, dimension)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETOBJECTATTR, STA_SIZE, &quot;111&quot;) &#39; Size set to 8 points</span>
+<span class="sd">End Sub</span>
+
+<span class="sd">&#39; Procedure to set tick label size for a given dimension to 7 points</span>
+<span class="sd">Sub setTickLabelSize(dimension)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH).NameObject.SetObjectCurrent</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SLA_SELECTDIM, dimension)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_AXIS).TickLabelAttributes(SAA_LINE_MAJORTIC).SetObjectCurrent</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETOBJECTATTR, STA_SIZE, &quot;97&quot;) &#39; Size set to 7 points</span>
+<span class="sd">End Sub</span>
+
+<span class="sd">&#39; Procedure to process tick settings for a given dimension</span>
+<span class="sd">Sub processTicks(dimension)</span>
+<span class="sd">    &#39; Ensure the object is correctly targeted before setting attributes</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_AXIS).NameObject.SetObjectCurrent</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SLA_SELECTDIM, dimension)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETAXISATTR, SAA_SELECTLINE, 1)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETAXISATTR, SEA_THICKNESS, &amp;H00000008)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETAXISATTR, SAA_TICSIZE, &amp;H00000020)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETAXISATTR, SAA_SELECTLINE, 2)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETAXISATTR, SEA_THICKNESS, &amp;H00000008)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETAXISATTR, SAA_TICSIZE, &amp;H00000020)</span>
+<span class="sd">End Sub</span>
+
+<span class="sd">&#39; Procedure to remove an axis for a given dimension</span>
+<span class="sd">Sub removeAxis(dimension)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SLA_SELECTDIM, dimension)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETAXISATTR, SAA_SUB2OPTIONS, &amp;H00000000)</span>
+<span class="sd">End Sub</span>
+
+<span class="sd">Sub resizeFigure</span>
+<span class="sd">	ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH).NameObject.SetObjectCurrent</span>
+<span class="sd">    With ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH)</span>
+<span class="sd">	&#39;.Top = 0</span>
+<span class="sd">	&#39;.Left = 0</span>
+<span class="sd">	.Width = &amp;H000004F5&amp;</span>
+<span class="sd">	.Height = &amp;H00000378&amp;</span>
+<span class="sd">	End With</span>
+<span class="sd">End Sub</span>
+
+<span class="sd">&#39; Main procedure</span>
+<span class="sd">Sub Main()</span>
+<span class="sd">    Dim FullPATH As String</span>
+<span class="sd">    Dim OrigPageName As String</span>
+<span class="sd">    Dim ObjectType As String</span>
+<span class="sd">    Dim COLOR As Long</span>
+
+<span class="sd">    &#39; Saves the original page to jump back</span>
+<span class="sd">    FullPATH = ActiveDocument.FullName</span>
+<span class="sd">    OrigPageName = ActiveDocument.CurrentPageItem.Name</span>
+<span class="sd">    ActiveDocument.NotebookItems(OrigPageName).IsCurrentBrowserEntry = True</span>
+
+<span class="sd">	&#39; Code to set the figure size should be implemented here</span>
+<span class="sd">    resizeFigure</span>
+
+<span class="sd">    &#39; Set the title sizes</span>
+<span class="sd">    setTitleSize</span>
+
+<span class="sd">    &#39; Set the sizes of X/Y labels</span>
+<span class="sd">    setLabelSize(1) &#39; X-axis</span>
+<span class="sd">    setLabelSize(2) &#39; Y-axis</span>
+
+<span class="sd">    &#39; Set the sizes of X/Y tick labels</span>
+<span class="sd">    setTickLabelSize(1) &#39; X-axis</span>
+<span class="sd">    setTickLabelSize(2) &#39; Y-axis</span>
+
+<span class="sd">    &#39; Set tick length and width</span>
+<span class="sd">    processTicks(1) &#39; X-axis</span>
+<span class="sd">    processTicks(2) &#39; Y-axis</span>
+
+<span class="sd">    &#39; Remove right and top axes</span>
+<span class="sd">    removeAxis(1) &#39; Right axis</span>
+<span class="sd">    removeAxis(2) &#39; Top axis</span>
+
+<span class="sd">    &#39; Go back to the original page</span>
+<span class="sd">	Notebooks(FullPATH).NotebookItems(OrigPageName).Open</span>
+
+<span class="sd">End Sub</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="p">)</span></div>
+
+
+
+<span class="c1"># Backward compatibility alias</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span>
+
+
+<div class="viewcode-block" id="SigMacro_processFigure_S">
+<a class="viewcode-back" href="../../source/api/gists.html#scitex.gists.SigMacro_processFigure_S">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">SigMacro_processFigure_S</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Deprecated: Use sigmacro_process_figure_s() instead.&quot;&quot;&quot;</span>
+    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+        <span class="s2">&quot;SigMacro_processFigure_S is deprecated, use sigmacro_process_figure_s() instead&quot;</span><span class="p">,</span>
+        <span class="ne">DeprecationWarning</span><span class="p">,</span>
+        <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="p">)</span>
+    <span class="k">return</span> <span class="n">sigmacro_process_figure_s</span><span class="p">()</span></div>
+
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
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+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_gists/_SigMacro_toBlue.html b/src/scitex/_sphinx_html/_modules/scitex_gists/_SigMacro_toBlue.html
new file mode 100644
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
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+</li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
+      </div>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_gists._SigMacro_toBlue</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_gists._SigMacro_toBlue</h1><div class="highlight"><pre>
+<div class="viewcode-block" id="sigmacro_to_blue">
+<a class="viewcode-back" href="../../source/api/gists.html#scitex.gists.sigmacro_to_blue">[docs]</a>
+<span></span><span class="k">def</span><span class="w"> </span><span class="nf">sigmacro_to_blue</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Print a macro for SigmaPlot (v12.0) that changes the color and style of the selected object.</span>
+
+<span class="sd">    Please refer to the &#39;Automating Routine Tasks&#39; section of the official documentation.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="nb">print</span><span class="p">(</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Option Explicit</span>
+
+<span class="sd">Function FlagOn(flag As Long) As Long</span>
+<span class="sd">    FlagOn = flag Or FLAG_SET_BIT &#39; Use to set option flag bits on, leaving others unchanged</span>
+<span class="sd">End Function</span>
+
+<span class="sd">Function FlagOff(flag As Long) As Long</span>
+<span class="sd">    FlagOff = flag Or FLAG_CLEAR_BIT &#39; Use to set option flag bits off, leaving others unchanged</span>
+<span class="sd">End Function</span>
+
+<span class="sd">Function getColor(colorName As String) As Long</span>
+<span class="sd">    Select Case colorName</span>
+
+<span class="sd">        Case &quot;Black&quot;</span>
+<span class="sd">            getColor = RGB(0, 0, 0)</span>
+<span class="sd">        Case &quot;Gray&quot;</span>
+<span class="sd">            getColor = RGB(128, 128, 128)</span>
+<span class="sd">        Case &quot;White&quot;</span>
+<span class="sd">            getColor = RGB(255, 255, 255)</span>
+
+
+<span class="sd">        Case &quot;Blue&quot;</span>
+<span class="sd">            getColor = RGB(0, 128, 192)</span>
+<span class="sd">        Case &quot;Green&quot;</span>
+<span class="sd">            getColor = RGB(20, 180, 20)</span>
+<span class="sd">        Case &quot;Red&quot;</span>
+<span class="sd">            getColor = RGB(255, 70, 50)</span>
+
+
+<span class="sd">        Case &quot;Yellow&quot;</span>
+<span class="sd">            getColor = RGB(230, 160, 20)</span>
+<span class="sd">        Case &quot;Purple&quot;</span>
+<span class="sd">            getColor = RGB(200, 50, 255)</span>
+
+
+<span class="sd">        Case &quot;Pink&quot;</span>
+<span class="sd">            getColor = RGB(255, 150, 200)</span>
+<span class="sd">        Case &quot;LightBlue&quot;</span>
+<span class="sd">            getColor = RGB(20, 200, 200)</span>
+
+
+<span class="sd">        Case &quot;DarkBlue&quot;</span>
+<span class="sd">            getColor = RGB(0, 0, 100)</span>
+<span class="sd">        Case &quot;Dan&quot;</span>
+<span class="sd">            getColor = RGB(228, 94, 50)</span>
+<span class="sd">        Case &quot;Brown&quot;</span>
+<span class="sd">            getColor = RGB(128, 0, 0)</span>
+
+<span class="sd">        Case Else</span>
+<span class="sd">            &#39; Default or error handling</span>
+<span class="sd">            getColor = RGB(0, 0, 0) &#39; Returning black as default or for an unrecognized color</span>
+<span class="sd">    End Select</span>
+<span class="sd">End Function</span>
+
+
+<span class="sd">Sub updatePlot(COLOR As Long)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH).NameObject.SetObjectCurrent</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SEA_COLOR, COLOR)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SEA_COLORREPEAT, &amp;H00000002&amp;)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SEA_THICKNESS, &amp;H00000005&amp;) &#39; .12 mm = .047 Inches</span>
+<span class="sd">End Sub</span>
+
+<span class="sd">Sub updateScatter(COLOR As Long)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH).NameObject.SetObjectCurrent</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SSA_EDGECOLOR, COLOR)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SSA_COLOR, COLOR)</span>
+<span class="sd">    ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SSA_COLORREPEAT, &amp;H00000002&amp;)</span>
+<span class="sd">	ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SSA_SIZE, &amp;H00000020&amp;) &#39; .8 mm = .032 inch</span>
+<span class="sd">    &#39; fixme scattersize=0.032 Innches</span>
+<span class="sd">End Sub</span>
+<span class="sd">Sub updateSolid(COLOR As Long)</span>
+<span class="sd">	ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH).NameObject.SetObjectCurrent</span>
+<span class="sd">	ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SDA_COLOR, COLOR)</span>
+<span class="sd">	ActiveDocument.CurrentPageItem.SetCurrentObjectAttribute(GPM_SETPLOTATTR, SDA_COLORREPEAT, &amp;H00000002&amp;)</span>
+<span class="sd">End Sub</span>
+
+
+
+<span class="sd">Function findObjectType() As String</span>
+<span class="sd">    On Error GoTo ErrorHandler</span>
+
+<span class="sd">    Dim ObjectType As Variant</span>
+<span class="sd">    Dim object_type As Variant</span>
+<span class="sd">	object_type = ActiveDocument.CurrentPageItem.GraphPages(0).CurrentPageObject(GPT_GRAPH).Plots(0).GetAttribute(SLA_TYPE, ObjectType)</span>
+
+<span class="sd">    If object_type = False Then</span>
+<span class="sd">        findObjectType = &quot;Error: Failed to get object type.&quot;</span>
+<span class="sd">        Exit Function</span>
+<span class="sd">    End If</span>
+
+<span class="sd">    &#39; Map the ObjectType to a string</span>
+<span class="sd">    Select Case object_type</span>
+<span class="sd">        Case SLA_TYPE_SCATTER</span>
+<span class="sd">            findObjectType = &quot;Scatter/Line&quot;</span>
+<span class="sd">        Case SLA_TYPE_BAR</span>
+<span class="sd">            findObjectType = &quot;Bar&quot;</span>
+<span class="sd">        Case SLA_TYPE_STACKED</span>
+<span class="sd">            findObjectType = &quot;Stacked Bar&quot;</span>
+<span class="sd">        Case SLA_TYPE_TUKEY</span>
+<span class="sd">            findObjectType = &quot;Box&quot;</span>
+<span class="sd">        Case SLA_TYPE_3DSCATTER</span>
+<span class="sd">            findObjectType = &quot;3D Scatter/Line&quot;</span>
+<span class="sd">        Case Else</span>
+<span class="sd">            findObjectType = &quot;Unknown Object Type: &quot; &amp; object_type</span>
+<span class="sd">    End Select</span>
+<span class="sd">    Exit Function</span>
+
+<span class="sd">ErrorHandler:</span>
+<span class="sd">    findObjectType = &quot;An error has occurred: &quot; &amp; Err.Description</span>
+<span class="sd">End Function</span>
+
+<span class="sd">Sub Main()</span>
+<span class="sd">    On Error GoTo ErrorHandler</span>
+
+<span class="sd">	Dim FullPATH As String</span>
+<span class="sd">    Dim OrigPageName As String</span>
+<span class="sd">    Dim ObjectType As String</span>
+<span class="sd">    Dim COLOR As Long</span>
+
+<span class="sd">    &#39; Remember the original page</span>
+<span class="sd">    FullPATH = ActiveDocument.FullName</span>
+<span class="sd">    OrigPageName = ActiveDocument.CurrentPageItem.Name</span>
+<span class="sd">    ActiveDocument.NotebookItems(OrigPageName).IsCurrentBrowserEntry = True</span>
+
+<span class="sd">    &#39; Get the color value for blue</span>
+<span class="sd">    COLOR = getColor(&quot;Blue&quot;)</span>
+
+<span class="sd">    &#39; Find the type of the object</span>
+<span class="sd">    ObjectType = findObjectType()</span>
+
+<span class="sd">    &#39; Check the object type and call the corresponding update function</span>
+<span class="sd">    If ObjectType = &quot;Scatter/Line&quot; Or ObjectType = &quot;3D Scatter/Line&quot; Then</span>
+<span class="sd">        updatePlot COLOR</span>
+<span class="sd">        updateScatter COLOR</span>
+<span class="sd">    ElseIf ObjectType = &quot;Bar&quot; Or ObjectType = &quot;Stacked Bar&quot; Or ObjectType = &quot;Box&quot; Then</span>
+<span class="sd">        updateSolid COLOR</span>
+<span class="sd">    Else</span>
+<span class="sd">        &#39; Raise a custom error</span>
+<span class="sd">        Err.Raise vbObjectError + 513, &quot;Main&quot;, &quot;Unknown or unsupported object type: &quot; &amp; ObjectType</span>
+<span class="sd">    End If</span>
+
+<span class="sd">    &#39; Go back to the original page</span>
+<span class="sd">	Notebooks(FullPATH).NotebookItems(OrigPageName).Open</span>
+
+<span class="sd">    Exit Sub</span>
+
+<span class="sd">ErrorHandler:</span>
+<span class="sd">    MsgBox &quot;An error has occurred: &quot; &amp; Err.Description</span>
+<span class="sd">End Sub</span>
+<span class="sd">&quot;&quot;&quot;</span>
+    <span class="p">)</span></div>
+
+
+
+<span class="c1"># Backward compatibility alias</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span>
+
+
+<div class="viewcode-block" id="SigMacro_toBlue">
+<a class="viewcode-back" href="../../source/api/gists.html#scitex.gists.SigMacro_toBlue">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">SigMacro_toBlue</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Deprecated: Use sigmacro_to_blue() instead.&quot;&quot;&quot;</span>
+    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+        <span class="s2">&quot;SigMacro_toBlue is deprecated, use sigmacro_to_blue() instead&quot;</span><span class="p">,</span>
+        <span class="ne">DeprecationWarning</span><span class="p">,</span>
+        <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="p">)</span>
+    <span class="k">return</span> <span class="n">sigmacro_to_blue</span><span class="p">()</span></div>
+
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_logging/_Tee.html b/src/scitex/_sphinx_html/_modules/scitex_logging/_Tee.html
new file mode 100644
index 000000000..3e676519b
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_logging/_Tee.html
@@ -0,0 +1,873 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_logging._Tee &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
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+</head>
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+  <div class="wy-grid-for-nav">
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+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_logging._Tee</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_logging._Tee</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-10-13 07:12:49 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex_repo/src/scitex/logging/_Tee.py</span>
+<span class="c1"># ----------------------------------------</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+<span class="n">__FILE__</span> <span class="o">=</span> <span class="vm">__file__</span>
+<span class="n">__DIR__</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">__FILE__</span><span class="p">)</span>
+<span class="c1"># ----------------------------------------</span>
+
+<span class="n">THIS_FILE</span> <span class="o">=</span> <span class="vm">__file__</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Functionality:</span>
+<span class="sd">    * Redirects and logs standard output and error streams</span>
+<span class="sd">    * Filters progress bar outputs from stderr logging</span>
+<span class="sd">    * Maintains original stdout/stderr functionality while logging</span>
+<span class="sd">Input:</span>
+<span class="sd">    * System stdout/stderr streams</span>
+<span class="sd">    * Output file paths for logging</span>
+<span class="sd">Output:</span>
+<span class="sd">    * Wrapped stdout/stderr objects with logging capability</span>
+<span class="sd">    * Log files containing stdout and stderr outputs</span>
+<span class="sd">Prerequisites:</span>
+<span class="sd">    * Python 3.6+</span>
+<span class="sd">    * scitex package for path handling and colored printing</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="sd">&quot;&quot;&quot;Imports&quot;&quot;&quot;</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">TextIO</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_clean_path</span><span class="p">(</span><span class="n">path_string</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Normalize a file system path (stdlib replacement for scitex.str.clean_path).&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">path_string</span><span class="p">,</span> <span class="s2">&quot;__fspath__&quot;</span><span class="p">):</span>
+        <span class="n">path_string</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">path_string</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">_os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">normpath</span><span class="p">(</span><span class="n">path_string</span><span class="p">)</span>
+
+
+<span class="sd">&quot;&quot;&quot;Functions &amp; Classes&quot;&quot;&quot;</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_logger</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get logger lazily to avoid circular import during module initialization.&quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+
+    <span class="k">return</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+
+<div class="viewcode-block" id="Tee">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.Tee">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">Tee</span><span class="p">:</span>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">stream</span><span class="p">:</span> <span class="n">TextIO</span><span class="p">,</span> <span class="n">log_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">verbose</span> <span class="o">=</span> <span class="n">verbose</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_stream</span> <span class="o">=</span> <span class="n">stream</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_log_path</span> <span class="o">=</span> <span class="n">log_path</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">log_path</span><span class="p">,</span> <span class="s2">&quot;w&quot;</span><span class="p">,</span> <span class="n">buffering</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>  <span class="c1"># Line buffering</span>
+            <span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
+                <span class="c1"># Show where logs are being saved using scitex logging</span>
+                <span class="n">logger</span> <span class="o">=</span> <span class="n">_get_logger</span><span class="p">()</span>
+                <span class="n">stream_name</span> <span class="o">=</span> <span class="s2">&quot;stderr&quot;</span> <span class="k">if</span> <span class="n">stream</span> <span class="ow">is</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span> <span class="k">else</span> <span class="s2">&quot;stdout&quot;</span>
+                <span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Tee [</span><span class="si">{</span><span class="n">stream_name</span><span class="si">}</span><span class="s2">]: </span><span class="si">{</span><span class="n">log_path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Failed to open log file </span><span class="si">{</span><span class="n">log_path</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">file</span><span class="o">=</span><span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_is_stderr</span> <span class="o">=</span> <span class="n">stream</span> <span class="ow">is</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span>
+
+<div class="viewcode-block" id="Tee.write">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.Tee.write">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">write</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_stream</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_is_stderr</span><span class="p">:</span>
+                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span>
+                    <span class="sa">r</span><span class="s2">&quot;^[\s]*[0-9]+%.*\[A*$&quot;</span><span class="p">,</span> <span class="n">data</span>
+                <span class="p">):</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>  <span class="c1"># Ensure immediate write</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>  <span class="c1"># Ensure immediate write</span></div>
+
+
+<div class="viewcode-block" id="Tee.flush">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.Tee.flush">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">flush</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_stream</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span></div>
+
+
+<div class="viewcode-block" id="Tee.isatty">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.Tee.isatty">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">isatty</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_stream</span><span class="o">.</span><span class="n">isatty</span><span class="p">()</span></div>
+
+
+<div class="viewcode-block" id="Tee.fileno">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.Tee.fileno">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">fileno</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_stream</span><span class="o">.</span><span class="n">fileno</span><span class="p">()</span></div>
+
+
+    <span class="nd">@property</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">buffer</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_stream</span><span class="o">.</span><span class="n">buffer</span>
+
+<div class="viewcode-block" id="Tee.close">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.Tee.close">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">close</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Explicitly close the log file.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s2">&quot;_log_file&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">verbose</span><span class="p">:</span>
+                    <span class="c1"># Use lazy logger to avoid circular import</span>
+                    <span class="n">logger</span> <span class="o">=</span> <span class="n">_get_logger</span><span class="p">()</span>
+                    <span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Tee: Closed log file: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_log_path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># Prevent double-close</span>
+            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+                <span class="k">pass</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__del__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="c1"># Only attempt cleanup if Python is not shutting down</span>
+        <span class="c1"># This prevents &quot;Exception ignored&quot; errors during interpreter shutdown</span>
+        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s2">&quot;_log_file&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="c1"># Check if the file object is still valid</span>
+                <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="p">,</span> <span class="s2">&quot;closed&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">_log_file</span><span class="o">.</span><span class="n">closed</span><span class="p">:</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+                <span class="c1"># Silently ignore exceptions during cleanup</span>
+                <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="tee">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.tee">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">tee</span><span class="p">(</span><span class="n">sys</span><span class="p">,</span> <span class="n">sdir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Redirects stdout and stderr to both console and log files.</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; import sys</span>
+<span class="sd">    &gt;&gt;&gt; sys.stdout, sys.stderr = tee(sys)</span>
+<span class="sd">    &gt;&gt;&gt; print(&quot;abc&quot;)  # stdout</span>
+<span class="sd">    &gt;&gt;&gt; print(1 / 0)  # stderr</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    sys_module : module</span>
+<span class="sd">        System module containing stdout and stderr</span>
+<span class="sd">    sdir : str, optional</span>
+<span class="sd">        Directory for log files</span>
+<span class="sd">    verbose : bool, default=True</span>
+<span class="sd">        Whether to print log file locations</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    tuple[Any, Any]</span>
+<span class="sd">        Wrapped stdout and stderr objects</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">inspect</span>
+
+    <span class="c1">####################</span>
+    <span class="c1">## Determine sdir</span>
+    <span class="c1">## DO NOT MODIFY THIS</span>
+    <span class="c1">####################</span>
+    <span class="k">if</span> <span class="n">sdir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">THIS_FILE</span> <span class="o">=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">stack</span><span class="p">()[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">filename</span>
+        <span class="k">if</span> <span class="s2">&quot;ipython&quot;</span> <span class="ow">in</span> <span class="n">THIS_FILE</span><span class="p">:</span>
+            <span class="n">THIS_FILE</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;/tmp/</span><span class="si">{</span><span class="n">_os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="s1">&#39;USER&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">.py&quot;</span>
+        <span class="n">sdir</span> <span class="o">=</span> <span class="n">_clean_path</span><span class="p">(</span><span class="n">_os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">THIS_FILE</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot;_out&quot;</span><span class="p">)</span>
+
+    <span class="n">sdir</span> <span class="o">=</span> <span class="n">_os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sdir</span><span class="p">,</span> <span class="s2">&quot;logs/&quot;</span><span class="p">)</span>
+    <span class="n">_os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">sdir</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="n">spath_stdout</span> <span class="o">=</span> <span class="n">sdir</span> <span class="o">+</span> <span class="s2">&quot;stdout.log&quot;</span>
+    <span class="n">spath_stderr</span> <span class="o">=</span> <span class="n">sdir</span> <span class="o">+</span> <span class="s2">&quot;stderr.log&quot;</span>
+    <span class="n">sys_stdout</span> <span class="o">=</span> <span class="n">Tee</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">,</span> <span class="n">spath_stdout</span><span class="p">)</span>
+    <span class="n">sys_stderr</span> <span class="o">=</span> <span class="n">Tee</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="p">,</span> <span class="n">spath_stderr</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
+        <span class="n">message</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;Standard output/error are being logged at:</span><span class="se">\n\t</span><span class="si">{</span><span class="n">spath_stdout</span><span class="si">}</span><span class="se">\n\t</span><span class="si">{</span><span class="n">spath_stderr</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="n">logger</span> <span class="o">=</span> <span class="n">_get_logger</span><span class="p">()</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="n">message</span><span class="p">)</span>
+        <span class="c1"># printc(message)</span>
+
+    <span class="k">return</span> <span class="n">sys_stdout</span><span class="p">,</span> <span class="n">sys_stderr</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_logging/_config.html b/src/scitex/_sphinx_html/_modules/scitex_logging/_config.html
new file mode 100644
index 000000000..0587a68fc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_logging/_config.html
@@ -0,0 +1,851 @@
+
+
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+  <meta charset="utf-8" />
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+  <title>scitex_logging._config &mdash; SciTeX v0.0.0</title>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_logging._config</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_logging._config</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-08-21 21:41:37 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex_repo/src/scitex/log/_config.py</span>
+<span class="c1"># ----------------------------------------</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+<span class="n">__FILE__</span> <span class="o">=</span> <span class="vm">__file__</span>
+<span class="n">__DIR__</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">__FILE__</span><span class="p">)</span>
+<span class="c1"># ----------------------------------------</span>
+
+<span class="sd">&quot;&quot;&quot;Configuration and setup for SciTeX logging.&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._handlers</span><span class="w"> </span><span class="kn">import</span> <span class="n">create_console_handler</span><span class="p">,</span> <span class="n">create_file_handler</span><span class="p">,</span> <span class="n">get_default_log_path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._levels</span><span class="w"> </span><span class="kn">import</span> <span class="n">CRITICAL</span><span class="p">,</span> <span class="n">DEBUG</span><span class="p">,</span> <span class="n">ERROR</span><span class="p">,</span> <span class="n">FAIL</span><span class="p">,</span> <span class="n">INFO</span><span class="p">,</span> <span class="n">SUCCESS</span><span class="p">,</span> <span class="n">WARNING</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._logger</span><span class="w"> </span><span class="kn">import</span> <span class="n">setup_logger_class</span>
+
+<span class="c1"># Global level variable</span>
+<span class="n">_GLOBAL_LEVEL</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="n">_FILE_LOGGING_ENABLED</span> <span class="o">=</span> <span class="kc">True</span>  <span class="c1"># Enable file logging by default</span>
+
+
+<div class="viewcode-block" id="set_level">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.set_level">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">set_level</span><span class="p">(</span><span class="n">level</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">int</span><span class="p">]):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Set global log level for all SciTeX loggers.&quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_GLOBAL_LEVEL</span>
+
+    <span class="n">level_map</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;debug&quot;</span><span class="p">:</span> <span class="n">DEBUG</span><span class="p">,</span>
+        <span class="s2">&quot;info&quot;</span><span class="p">:</span> <span class="n">INFO</span><span class="p">,</span>
+        <span class="s2">&quot;warning&quot;</span><span class="p">:</span> <span class="n">WARNING</span><span class="p">,</span>
+        <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">ERROR</span><span class="p">,</span>
+        <span class="s2">&quot;critical&quot;</span><span class="p">:</span> <span class="n">CRITICAL</span><span class="p">,</span>
+        <span class="s2">&quot;success&quot;</span><span class="p">:</span> <span class="n">SUCCESS</span><span class="p">,</span>
+        <span class="s2">&quot;fail&quot;</span><span class="p">:</span> <span class="n">FAIL</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="n">level_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">level</span><span class="o">.</span><span class="n">lower</span><span class="p">(),</span> <span class="n">level</span><span class="p">)</span>
+
+    <span class="n">_GLOBAL_LEVEL</span> <span class="o">=</span> <span class="n">level</span>
+    <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">()</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+
+    <span class="c1"># Update all existing handlers</span>
+    <span class="k">for</span> <span class="n">handler</span> <span class="ow">in</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">()</span><span class="o">.</span><span class="n">handlers</span><span class="p">:</span>
+        <span class="n">handler</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="get_level">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.get_level">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_level</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get current global log level.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_GLOBAL_LEVEL</span> <span class="ow">or</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">()</span><span class="o">.</span><span class="n">level</span></div>
+
+
+
+<div class="viewcode-block" id="enable_file_logging">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.enable_file_logging">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">enable_file_logging</span><span class="p">(</span><span class="n">enabled</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Enable or disable file logging globally.&quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_FILE_LOGGING_ENABLED</span>
+    <span class="n">_FILE_LOGGING_ENABLED</span> <span class="o">=</span> <span class="n">enabled</span></div>
+
+
+
+<div class="viewcode-block" id="is_file_logging_enabled">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.is_file_logging_enabled">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">is_file_logging_enabled</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if file logging is enabled.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_FILE_LOGGING_ENABLED</span></div>
+
+
+
+<div class="viewcode-block" id="configure">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.configure">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">configure</span><span class="p">(</span>
+    <span class="n">level</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;info&quot;</span><span class="p">,</span>
+    <span class="n">log_file</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">enable_file</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">enable_console</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">capture_prints</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">max_file_size</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">10</span> <span class="o">*</span> <span class="mi">1024</span> <span class="o">*</span> <span class="mi">1024</span><span class="p">,</span>
+    <span class="n">backup_count</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">5</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Configure logging for SciTeX with both console and file output.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        level: Log level (string or logging constant)</span>
+<span class="sd">        log_file: Path to log file (default: ~/.scitex/logs/scitex-YYYY-MM-DD.log)</span>
+<span class="sd">        enable_file: Whether to enable file logging</span>
+<span class="sd">        enable_console: Whether to enable console logging</span>
+<span class="sd">        capture_prints: Whether to capture print() statements to logs</span>
+<span class="sd">        max_file_size: Maximum size of log file before rotation (default: 10MB)</span>
+<span class="sd">        backup_count: Number of backup files to keep (default: 5)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Setup custom logger class</span>
+    <span class="n">setup_logger_class</span><span class="p">()</span>
+
+    <span class="c1"># Convert level if string</span>
+    <span class="n">level_map</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;debug&quot;</span><span class="p">:</span> <span class="n">DEBUG</span><span class="p">,</span>
+        <span class="s2">&quot;info&quot;</span><span class="p">:</span> <span class="n">INFO</span><span class="p">,</span>
+        <span class="s2">&quot;warning&quot;</span><span class="p">:</span> <span class="n">WARNING</span><span class="p">,</span>
+        <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="n">ERROR</span><span class="p">,</span>
+        <span class="s2">&quot;critical&quot;</span><span class="p">:</span> <span class="n">CRITICAL</span><span class="p">,</span>
+        <span class="s2">&quot;success&quot;</span><span class="p">:</span> <span class="n">SUCCESS</span><span class="p">,</span>
+        <span class="s2">&quot;fail&quot;</span><span class="p">:</span> <span class="n">FAIL</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="n">level_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">level</span><span class="o">.</span><span class="n">lower</span><span class="p">(),</span> <span class="n">level</span><span class="p">)</span>
+
+    <span class="c1"># Set global level</span>
+    <span class="n">set_level</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+
+    <span class="c1"># Clear any existing handlers</span>
+    <span class="n">root_logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">handler</span> <span class="ow">in</span> <span class="n">root_logger</span><span class="o">.</span><span class="n">handlers</span><span class="p">[:]:</span>
+        <span class="n">root_logger</span><span class="o">.</span><span class="n">removeHandler</span><span class="p">(</span><span class="n">handler</span><span class="p">)</span>
+
+    <span class="n">handlers</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="c1"># Add console handler if enabled</span>
+    <span class="k">if</span> <span class="n">enable_console</span><span class="p">:</span>
+        <span class="n">console_handler</span> <span class="o">=</span> <span class="n">create_console_handler</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+        <span class="n">handlers</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">console_handler</span><span class="p">)</span>
+
+    <span class="c1"># Add file handler if enabled</span>
+    <span class="k">if</span> <span class="n">enable_file</span> <span class="ow">and</span> <span class="n">is_file_logging_enabled</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">log_file</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">log_file</span> <span class="o">=</span> <span class="n">get_default_log_path</span><span class="p">()</span>
+
+        <span class="n">file_handler</span> <span class="o">=</span> <span class="n">create_file_handler</span><span class="p">(</span>
+            <span class="n">log_file</span><span class="p">,</span> <span class="n">level</span><span class="p">,</span> <span class="n">max_bytes</span><span class="o">=</span><span class="n">max_file_size</span><span class="p">,</span> <span class="n">backup_count</span><span class="o">=</span><span class="n">backup_count</span>
+        <span class="p">)</span>
+        <span class="n">handlers</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">file_handler</span><span class="p">)</span>
+
+    <span class="c1"># Configure basic logging with our handlers</span>
+    <span class="n">logging</span><span class="o">.</span><span class="n">basicConfig</span><span class="p">(</span>
+        <span class="n">level</span><span class="o">=</span><span class="n">level</span><span class="p">,</span>
+        <span class="n">handlers</span><span class="o">=</span><span class="n">handlers</span><span class="p">,</span>
+        <span class="n">force</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>  <span class="c1"># Force reconfiguration</span>
+    <span class="p">)</span>
+
+    <span class="c1"># Enable print capture if requested</span>
+    <span class="k">if</span> <span class="n">capture_prints</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">._print_capture</span><span class="w"> </span><span class="kn">import</span> <span class="n">enable_print_capture</span>
+
+        <span class="n">enable_print_capture</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="get_log_path">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.get_log_path">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_log_path</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get the current log file path.&quot;&quot;&quot;</span>
+    <span class="k">for</span> <span class="n">handler</span> <span class="ow">in</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">()</span><span class="o">.</span><span class="n">handlers</span><span class="p">:</span>
+        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">handler</span><span class="p">,</span> <span class="s2">&quot;baseFilename&quot;</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">handler</span><span class="o">.</span><span class="n">baseFilename</span>
+    <span class="k">return</span> <span class="kc">None</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;set_level&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get_level&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;enable_file_logging&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;is_file_logging_enabled&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;configure&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get_log_path&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_logging/_context.html b/src/scitex/_sphinx_html/_modules/scitex_logging/_context.html
new file mode 100644
index 000000000..9c94103dc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_logging/_context.html
@@ -0,0 +1,779 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_logging._context &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
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+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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+</ul>
+</li>
+</ul>
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+        </div>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_logging._context</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_logging._context</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2025-10-11 22:30:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex_repo/src/scitex/logging/_context.py</span>
+<span class="c1"># ----------------------------------------</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+<span class="n">__FILE__</span> <span class="o">=</span> <span class="s2">&quot;./src/scitex/logging/_context.py&quot;</span>
+<span class="n">__DIR__</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">__FILE__</span><span class="p">)</span>
+<span class="c1"># ----------------------------------------</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Context manager for temporary logging to specific files.</span>
+
+<span class="sd">Provides clean API for adding/removing file handlers during execution.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_logging</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">contextlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">contextmanager</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._formatters</span><span class="w"> </span><span class="kn">import</span> <span class="n">SciTeXFileFormatter</span>
+
+
+<div class="viewcode-block" id="log_to_file">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.log_to_file">[docs]</a>
+<span class="nd">@contextmanager</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">log_to_file</span><span class="p">(</span>
+    <span class="n">file_path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">level</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="n">_logging</span><span class="o">.</span><span class="n">DEBUG</span><span class="p">,</span>
+    <span class="n">mode</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;w&quot;</span><span class="p">,</span>
+    <span class="n">formatter</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">_logging</span><span class="o">.</span><span class="n">Formatter</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Context manager to temporarily log all output to a specific file.</span>
+
+<span class="sd">    Usage:</span>
+<span class="sd">        import scitex_logging as logging</span>
+<span class="sd">        logger = logging.getLogger(__name__)</span>
+
+<span class="sd">        with logging.log_to_file(&quot;/path/to/log.txt&quot;):</span>
+<span class="sd">            logger.info(&quot;This goes to both console and /path/to/log.txt&quot;)</span>
+<span class="sd">            logger.success(&quot;This too!&quot;)</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        file_path: Path to log file</span>
+<span class="sd">        level: Logging level for this handler (default: DEBUG)</span>
+<span class="sd">        mode: File mode (&#39;w&#39; for overwrite, &#39;a&#39; for append)</span>
+<span class="sd">        formatter: Custom formatter (default: SciTeXFileFormatter)</span>
+
+<span class="sd">    Yields</span>
+<span class="sd">    ------</span>
+<span class="sd">        The file handler (can be ignored)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Ensure directory exists</span>
+    <span class="n">file_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span>
+    <span class="n">file_path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="c1"># Create handler</span>
+    <span class="n">handler</span> <span class="o">=</span> <span class="n">_logging</span><span class="o">.</span><span class="n">FileHandler</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file_path</span><span class="p">),</span> <span class="n">mode</span><span class="o">=</span><span class="n">mode</span><span class="p">)</span>
+    <span class="n">handler</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+
+    <span class="c1"># Set formatter</span>
+    <span class="k">if</span> <span class="n">formatter</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">formatter</span> <span class="o">=</span> <span class="n">SciTeXFileFormatter</span><span class="p">()</span>
+    <span class="n">handler</span><span class="o">.</span><span class="n">setFormatter</span><span class="p">(</span><span class="n">formatter</span><span class="p">)</span>
+
+    <span class="c1"># Add to root logger</span>
+    <span class="n">root_logger</span> <span class="o">=</span> <span class="n">_logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">()</span>
+    <span class="n">root_logger</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">handler</span><span class="p">)</span>
+
+    <span class="c1"># Log where output is going (lazy import to avoid circular dependency)</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">_log_info</span><span class="p">():</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">scitex_logging</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">logging</span>
+
+            <span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Logging to: </span><span class="si">{</span><span class="n">file_path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">except</span><span class="p">:</span>
+            <span class="k">pass</span>  <span class="c1"># Silently fail if logging not ready</span>
+
+    <span class="n">_log_info</span><span class="p">()</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">yield</span> <span class="n">handler</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="c1"># Clean up handler</span>
+        <span class="n">root_logger</span><span class="o">.</span><span class="n">removeHandler</span><span class="p">(</span><span class="n">handler</span><span class="p">)</span>
+        <span class="n">handler</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+        <span class="c1"># Log completion (lazy import)</span>
+        <span class="k">def</span><span class="w"> </span><span class="nf">_log_saved</span><span class="p">():</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="kn">import</span><span class="w"> </span><span class="nn">scitex_logging</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">logging</span>
+
+                <span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+                <span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Log saved: </span><span class="si">{</span><span class="n">file_path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="k">except</span><span class="p">:</span>
+                <span class="k">pass</span>
+
+        <span class="n">_log_saved</span><span class="p">()</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;log_to_file&quot;</span><span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_logging/_errors.html b/src/scitex/_sphinx_html/_modules/scitex_logging/_errors.html
new file mode 100644
index 000000000..f67582dea
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_logging/_errors.html
@@ -0,0 +1,1286 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_logging._errors &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_logging._errors</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_logging._errors</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-12-21&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/logging/_errors.py</span>
+
+<span class="sd">&quot;&quot;&quot;Error classes for SciTeX.</span>
+
+<span class="sd">All SciTeX exceptions are defined here for unified error handling.</span>
+<span class="sd">Re-exported from scitex.logging for backwards compatibility.</span>
+
+<span class="sd">Usage:</span>
+<span class="sd">    from scitex_logging import SciTeXError, SaveError, LoadError</span>
+<span class="sd">    # or (backwards compatible)</span>
+<span class="sd">    from scitex_logging import SciTeXError, SaveError, LoadError</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Base Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="SciTeXError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.SciTeXError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">SciTeXError</span><span class="p">(</span><span class="ne">Exception</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base Exception class for all SciTeX errors.&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="SciTeXError.__init__">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.SciTeXError.__init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">message</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">context</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">dict</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">suggestion</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Initialize SciTeX error with detailed information.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        message : str</span>
+<span class="sd">            The error message</span>
+<span class="sd">        context : dict, optional</span>
+<span class="sd">            Additional context information (e.g., file paths, variable values)</span>
+<span class="sd">        suggestion : str, optional</span>
+<span class="sd">            Suggested fix or action</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">message</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">context</span> <span class="o">=</span> <span class="n">context</span> <span class="ow">or</span> <span class="p">{}</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">suggestion</span> <span class="o">=</span> <span class="n">suggestion</span>
+
+        <span class="c1"># Build the full error message</span>
+        <span class="n">error_parts</span> <span class="o">=</span> <span class="p">[</span><span class="sa">f</span><span class="s2">&quot;SciTeX Error: </span><span class="si">{</span><span class="n">message</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">]</span>
+
+        <span class="k">if</span> <span class="n">context</span><span class="p">:</span>
+            <span class="n">error_parts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Context:&quot;</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">context</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+                <span class="n">error_parts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  </span><span class="si">{</span><span class="n">key</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">value</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">suggestion</span><span class="p">:</span>
+            <span class="n">error_parts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Suggestion: </span><span class="si">{</span><span class="n">suggestion</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">error_parts</span><span class="p">))</span></div>
+</div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Configuration Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="ConfigurationError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.ConfigurationError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ConfigurationError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when there are issues with SciTeX configuration.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="ConfigFileNotFoundError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.ConfigFileNotFoundError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ConfigFileNotFoundError</span><span class="p">(</span><span class="n">ConfigurationError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when a required configuration file is not found.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filepath</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Configuration file not found: </span><span class="si">{</span><span class="n">filepath</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;filepath&quot;</span><span class="p">:</span> <span class="n">filepath</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Ensure the configuration file exists in ./config/ directory&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="ConfigKeyError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.ConfigKeyError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ConfigKeyError</span><span class="p">(</span><span class="n">ConfigurationError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when a required configuration key is missing.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">available_keys</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">list</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span>
+        <span class="n">context</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;missing_key&quot;</span><span class="p">:</span> <span class="n">key</span><span class="p">}</span>
+        <span class="k">if</span> <span class="n">available_keys</span><span class="p">:</span>
+            <span class="n">context</span><span class="p">[</span><span class="s2">&quot;available_keys&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">available_keys</span>
+
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Configuration key &#39;</span><span class="si">{</span><span class="n">key</span><span class="si">}</span><span class="s2">&#39; not found&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="n">context</span><span class="p">,</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="sa">f</span><span class="s2">&quot;Add &#39;</span><span class="si">{</span><span class="n">key</span><span class="si">}</span><span class="s2">&#39; to your configuration file or check for typos&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># IO Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="IOError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.IOError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">IOError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base class for input/output related errors.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="FileFormatError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.FileFormatError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">FileFormatError</span><span class="p">(</span><span class="ne">IOError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when file format is not supported or incorrect.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">filepath</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">expected_format</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">actual_format</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">):</span>
+        <span class="n">context</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;filepath&quot;</span><span class="p">:</span> <span class="n">filepath</span><span class="p">}</span>
+        <span class="k">if</span> <span class="n">expected_format</span><span class="p">:</span>
+            <span class="n">context</span><span class="p">[</span><span class="s2">&quot;expected_format&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">expected_format</span>
+        <span class="k">if</span> <span class="n">actual_format</span><span class="p">:</span>
+            <span class="n">context</span><span class="p">[</span><span class="s2">&quot;actual_format&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">actual_format</span>
+
+        <span class="n">message</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;File format error for: </span><span class="si">{</span><span class="n">filepath</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">if</span> <span class="n">expected_format</span> <span class="ow">and</span> <span class="n">actual_format</span><span class="p">:</span>
+            <span class="n">message</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot; (expected: </span><span class="si">{</span><span class="n">expected_format</span><span class="si">}</span><span class="s2">, got: </span><span class="si">{</span><span class="n">actual_format</span><span class="si">}</span><span class="s2">)&quot;</span>
+
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="n">message</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="n">context</span><span class="p">,</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check the file extension and content format&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="SaveError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.SaveError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">SaveError</span><span class="p">(</span><span class="ne">IOError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when saving data fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filepath</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Failed to save to </span><span class="si">{</span><span class="n">filepath</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">reason</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;filepath&quot;</span><span class="p">:</span> <span class="n">filepath</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check file permissions and disk space&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="LoadError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.LoadError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">LoadError</span><span class="p">(</span><span class="ne">IOError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when loading data fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filepath</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Failed to load from </span><span class="si">{</span><span class="n">filepath</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">reason</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;filepath&quot;</span><span class="p">:</span> <span class="n">filepath</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Verify the file exists and is not corrupted&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Scholar Module Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="ScholarError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.ScholarError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ScholarError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base class for scholar module errors.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="SearchError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.SearchError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">SearchError</span><span class="p">(</span><span class="n">ScholarError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when paper search fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">query</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">source</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Search failed for query &#39;</span><span class="si">{</span><span class="n">query</span><span class="si">}</span><span class="s2">&#39; on </span><span class="si">{</span><span class="n">source</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;query&quot;</span><span class="p">:</span> <span class="n">query</span><span class="p">,</span> <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="n">source</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check your internet connection and API keys&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="EnrichmentError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.EnrichmentError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">EnrichmentError</span><span class="p">(</span><span class="n">ScholarError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when paper enrichment fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">paper_title</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Failed to enrich paper: </span><span class="si">{</span><span class="n">paper_title</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;paper_title&quot;</span><span class="p">:</span> <span class="n">paper_title</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Verify journal information is available&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="PDFDownloadError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.PDFDownloadError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">PDFDownloadError</span><span class="p">(</span><span class="n">ScholarError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when PDF download fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">url</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Failed to download PDF from </span><span class="si">{</span><span class="n">url</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;url&quot;</span><span class="p">:</span> <span class="n">url</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check if the paper is open access&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="DOIResolutionError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.DOIResolutionError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">DOIResolutionError</span><span class="p">(</span><span class="n">ScholarError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when DOI resolution fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">doi</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Failed to resolve DOI: </span><span class="si">{</span><span class="n">doi</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;doi&quot;</span><span class="p">:</span> <span class="n">doi</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Verify the DOI is correct and try again&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="PDFExtractionError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.PDFExtractionError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">PDFExtractionError</span><span class="p">(</span><span class="n">ScholarError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when PDF text extraction fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filepath</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Failed to extract text from PDF: </span><span class="si">{</span><span class="n">filepath</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;filepath&quot;</span><span class="p">:</span> <span class="n">filepath</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Ensure the PDF is not corrupted or encrypted&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="BibTeXEnrichmentError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.BibTeXEnrichmentError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">BibTeXEnrichmentError</span><span class="p">(</span><span class="n">ScholarError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when BibTeX enrichment fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">bibtex_file</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Failed to enrich BibTeX file: </span><span class="si">{</span><span class="n">bibtex_file</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;bibtex_file&quot;</span><span class="p">:</span> <span class="n">bibtex_file</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check the BibTeX format and ensure all entries are valid&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="TranslatorError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.TranslatorError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">TranslatorError</span><span class="p">(</span><span class="n">ScholarError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when Zotero translator operations fail.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">translator_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Translator error in </span><span class="si">{</span><span class="n">translator_name</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">reason</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;translator&quot;</span><span class="p">:</span> <span class="n">translator_name</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check translator compatibility and JavaScript environment&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="AuthenticationError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.AuthenticationError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">AuthenticationError</span><span class="p">(</span><span class="n">ScholarError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when authentication fails.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">provider</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Authentication failed for </span><span class="si">{</span><span class="n">provider</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">reason</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;provider&quot;</span><span class="p">:</span> <span class="n">provider</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check your credentials and authentication settings&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Plotting Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="PlottingError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.PlottingError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">PlottingError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base class for plotting-related errors.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="FigureNotFoundError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.FigureNotFoundError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">FigureNotFoundError</span><span class="p">(</span><span class="n">PlottingError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when attempting to operate on a non-existent figure.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fig_id</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">str</span><span class="p">]):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Figure </span><span class="si">{</span><span class="n">fig_id</span><span class="si">}</span><span class="s2"> not found&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;figure_id&quot;</span><span class="p">:</span> <span class="n">fig_id</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Ensure the figure was created before attempting to save/modify it&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="AxisError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.AxisError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">AxisError</span><span class="p">(</span><span class="n">PlottingError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when there are issues with plot axes.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">message</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">axis_info</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">dict</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="n">message</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;axis_info&quot;</span><span class="p">:</span> <span class="n">axis_info</span><span class="p">}</span> <span class="k">if</span> <span class="n">axis_info</span> <span class="k">else</span> <span class="kc">None</span><span class="p">,</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check axis indices and subplot configuration&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Data Processing Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="DataError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.DataError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">DataError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base class for data processing errors.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="ShapeError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.ShapeError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ShapeError</span><span class="p">(</span><span class="n">DataError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when data shapes are incompatible.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">expected_shape</span><span class="p">:</span> <span class="nb">tuple</span><span class="p">,</span> <span class="n">actual_shape</span><span class="p">:</span> <span class="nb">tuple</span><span class="p">,</span> <span class="n">operation</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Shape mismatch in </span><span class="si">{</span><span class="n">operation</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span>
+                <span class="s2">&quot;expected_shape&quot;</span><span class="p">:</span> <span class="n">expected_shape</span><span class="p">,</span>
+                <span class="s2">&quot;actual_shape&quot;</span><span class="p">:</span> <span class="n">actual_shape</span><span class="p">,</span>
+                <span class="s2">&quot;operation&quot;</span><span class="p">:</span> <span class="n">operation</span><span class="p">,</span>
+            <span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Reshape or transpose your data to match expected dimensions&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="DTypeError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.DTypeError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">DTypeError</span><span class="p">(</span><span class="n">DataError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when data types are incompatible.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">expected_dtype</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">actual_dtype</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">operation</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Data type mismatch in </span><span class="si">{</span><span class="n">operation</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span>
+                <span class="s2">&quot;expected_dtype&quot;</span><span class="p">:</span> <span class="n">expected_dtype</span><span class="p">,</span>
+                <span class="s2">&quot;actual_dtype&quot;</span><span class="p">:</span> <span class="n">actual_dtype</span><span class="p">,</span>
+                <span class="s2">&quot;operation&quot;</span><span class="p">:</span> <span class="n">operation</span><span class="p">,</span>
+            <span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="sa">f</span><span class="s2">&quot;Convert data to </span><span class="si">{</span><span class="n">expected_dtype</span><span class="si">}</span><span class="s2"> using appropriate casting&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Path Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="PathError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.PathError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">PathError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base class for path-related errors.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="InvalidPathError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.InvalidPathError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">InvalidPathError</span><span class="p">(</span><span class="n">PathError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when a path is invalid or doesn&#39;t follow SciTeX conventions.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Invalid path: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="n">path</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Use relative paths starting with &#39;./&#39; or &#39;../&#39;&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="PathNotFoundError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.PathNotFoundError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">PathNotFoundError</span><span class="p">(</span><span class="n">PathError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when a required path doesn&#39;t exist.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Path not found: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="n">path</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Check if the path exists and is accessible&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Template Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="TemplateError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.TemplateError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">TemplateError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base class for template-related errors.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="TemplateViolationError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.TemplateViolationError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">TemplateViolationError</span><span class="p">(</span><span class="n">TemplateError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when SciTeX template is not followed.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filepath</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">violation</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Template violation in </span><span class="si">{</span><span class="n">filepath</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">violation</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;filepath&quot;</span><span class="p">:</span> <span class="n">filepath</span><span class="p">,</span> <span class="s2">&quot;violation&quot;</span><span class="p">:</span> <span class="n">violation</span><span class="p">},</span>
+            <span class="n">suggestion</span><span class="o">=</span><span class="s2">&quot;Follow the SciTeX template structure as defined in IMPORTANT-SCITEX-02-file-template.md&quot;</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Neural Network Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="NNError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.NNError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">NNError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base class for neural network module errors.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="ModelError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.ModelError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">ModelError</span><span class="p">(</span><span class="n">NNError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when there are issues with neural network models.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">model_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Model error in </span><span class="si">{</span><span class="n">model_name</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">reason</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;model_name&quot;</span><span class="p">:</span> <span class="n">model_name</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Statistics Errors</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="StatsError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.StatsError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">StatsError</span><span class="p">(</span><span class="n">SciTeXError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base class for statistics module errors.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="TestError">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.TestError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">TestError</span><span class="p">(</span><span class="n">StatsError</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when statistical tests fail.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">test_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">reason</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Statistical test &#39;</span><span class="si">{</span><span class="n">test_name</span><span class="si">}</span><span class="s2">&#39; failed: </span><span class="si">{</span><span class="n">reason</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span>
+            <span class="n">context</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;test_name&quot;</span><span class="p">:</span> <span class="n">test_name</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="n">reason</span><span class="p">},</span>
+        <span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Validation Helpers</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="check_path">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.check_path">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">check_path</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Validate a path according to SciTeX conventions.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="k">raise</span> <span class="n">InvalidPathError</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="s2">&quot;Path must be a string&quot;</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;./&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;../&quot;</span><span class="p">)):</span>
+        <span class="k">raise</span> <span class="n">InvalidPathError</span><span class="p">(</span>
+            <span class="n">path</span><span class="p">,</span> <span class="s2">&quot;Path must be relative and start with &#39;./&#39; or &#39;../&#39;&quot;</span>
+        <span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="check_file_exists">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.check_file_exists">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">check_file_exists</span><span class="p">(</span><span class="n">filepath</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if a file exists.&quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">filepath</span><span class="p">):</span>
+        <span class="k">raise</span> <span class="n">PathNotFoundError</span><span class="p">(</span><span class="n">filepath</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="check_shape_compatibility">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.check_shape_compatibility">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">check_shape_compatibility</span><span class="p">(</span><span class="n">shape1</span><span class="p">:</span> <span class="nb">tuple</span><span class="p">,</span> <span class="n">shape2</span><span class="p">:</span> <span class="nb">tuple</span><span class="p">,</span> <span class="n">operation</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if two shapes are compatible for an operation.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">shape1</span> <span class="o">!=</span> <span class="n">shape2</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="n">ShapeError</span><span class="p">(</span><span class="n">shape1</span><span class="p">,</span> <span class="n">shape2</span><span class="p">,</span> <span class="n">operation</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="c1"># Base errors</span>
+    <span class="s2">&quot;SciTeXError&quot;</span><span class="p">,</span>
+    <span class="c1"># Configuration</span>
+    <span class="s2">&quot;ConfigurationError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;ConfigFileNotFoundError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;ConfigKeyError&quot;</span><span class="p">,</span>
+    <span class="c1"># IO</span>
+    <span class="s2">&quot;IOError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;FileFormatError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;SaveError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;LoadError&quot;</span><span class="p">,</span>
+    <span class="c1"># Scholar</span>
+    <span class="s2">&quot;ScholarError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;SearchError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;EnrichmentError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;PDFDownloadError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;DOIResolutionError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;PDFExtractionError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;BibTeXEnrichmentError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;TranslatorError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;AuthenticationError&quot;</span><span class="p">,</span>
+    <span class="c1"># Plotting</span>
+    <span class="s2">&quot;PlottingError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;FigureNotFoundError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;AxisError&quot;</span><span class="p">,</span>
+    <span class="c1"># Data</span>
+    <span class="s2">&quot;DataError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;ShapeError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;DTypeError&quot;</span><span class="p">,</span>
+    <span class="c1"># Path</span>
+    <span class="s2">&quot;PathError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;InvalidPathError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;PathNotFoundError&quot;</span><span class="p">,</span>
+    <span class="c1"># Template</span>
+    <span class="s2">&quot;TemplateError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;TemplateViolationError&quot;</span><span class="p">,</span>
+    <span class="c1"># Neural Network</span>
+    <span class="s2">&quot;NNError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;ModelError&quot;</span><span class="p">,</span>
+    <span class="c1"># Statistics</span>
+    <span class="s2">&quot;StatsError&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;TestError&quot;</span><span class="p">,</span>
+    <span class="c1"># Validation helpers</span>
+    <span class="s2">&quot;check_path&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;check_file_exists&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;check_shape_compatibility&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_logging/_warnings.html b/src/scitex/_sphinx_html/_modules/scitex_logging/_warnings.html
new file mode 100644
index 000000000..2ec539fd1
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_logging/_warnings.html
@@ -0,0 +1,968 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_logging._warnings &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
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+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_logging._warnings</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+             
+  <h1>Source code for scitex_logging._warnings</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-12-21&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/logging/_warnings.py</span>
+
+<span class="sd">&quot;&quot;&quot;Warning system for SciTeX, mimicking Python&#39;s warnings module.</span>
+
+<span class="sd">Usage:</span>
+<span class="sd">    import scitex_logging as logging</span>
+<span class="sd">    from scitex_logging import UnitWarning</span>
+
+<span class="sd">    # Emit a warning</span>
+<span class="sd">    logging.warn(&quot;Missing units on axis label&quot;, UnitWarning)</span>
+
+<span class="sd">    # Filter warnings (like warnings.filterwarnings)</span>
+<span class="sd">    logging.filterwarnings(&quot;ignore&quot;, category=UnitWarning)</span>
+<span class="sd">    logging.filterwarnings(&quot;error&quot;, category=UnitWarning)  # Raise as exception</span>
+<span class="sd">    logging.filterwarnings(&quot;always&quot;, category=UnitWarning)  # Always show</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_logging</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Set</span><span class="p">,</span> <span class="n">Type</span>
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Warning Categories (similar to Python&#39;s warning classes)</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="SciTeXWarning">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.SciTeXWarning">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">SciTeXWarning</span><span class="p">(</span><span class="ne">UserWarning</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Base warning class for all SciTeX warnings.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="UnitWarning">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.UnitWarning">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">UnitWarning</span><span class="p">(</span><span class="n">SciTeXWarning</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Warning for axis label unit issues (educational for SI conventions).</span>
+
+<span class="sd">    Raised when:</span>
+<span class="sd">    - Axis labels are missing units</span>
+<span class="sd">    - Units use parentheses instead of brackets (SI prefers [])</span>
+<span class="sd">    - Units use division instead of negative exponents (m/s vs m·s⁻¹)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="StyleWarning">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.StyleWarning">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">StyleWarning</span><span class="p">(</span><span class="n">SciTeXWarning</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Warning for style/formatting issues.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="SciTeXDeprecationWarning">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.SciTeXDeprecationWarning">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">SciTeXDeprecationWarning</span><span class="p">(</span><span class="n">SciTeXWarning</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Warning for deprecated SciTeX features.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="PerformanceWarning">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.PerformanceWarning">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">PerformanceWarning</span><span class="p">(</span><span class="n">SciTeXWarning</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Warning for performance issues.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<div class="viewcode-block" id="DataLossWarning">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.DataLossWarning">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">DataLossWarning</span><span class="p">(</span><span class="n">SciTeXWarning</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Warning for potential data loss.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Warning Filter Registry</span>
+<span class="c1"># =============================================================================</span>
+
+<span class="c1"># Actions: &quot;ignore&quot;, &quot;error&quot;, &quot;always&quot;, &quot;default&quot;, &quot;once&quot;, &quot;module&quot;</span>
+<span class="n">_filters</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="n">Type</span><span class="p">[</span><span class="n">SciTeXWarning</span><span class="p">],</span> <span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+<span class="n">_seen_warnings</span><span class="p">:</span> <span class="n">Set</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>  <span class="c1"># For &quot;once&quot; action</span>
+
+
+<div class="viewcode-block" id="filterwarnings">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.filterwarnings">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">filterwarnings</span><span class="p">(</span>
+    <span class="n">action</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">category</span><span class="p">:</span> <span class="n">Type</span><span class="p">[</span><span class="n">SciTeXWarning</span><span class="p">]</span> <span class="o">=</span> <span class="n">SciTeXWarning</span><span class="p">,</span>
+    <span class="n">message</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Control warning behavior (like warnings.filterwarnings).</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    action : str</span>
+<span class="sd">        One of:</span>
+<span class="sd">        - &quot;ignore&quot;: Never show this warning</span>
+<span class="sd">        - &quot;error&quot;: Raise as exception</span>
+<span class="sd">        - &quot;always&quot;: Always show</span>
+<span class="sd">        - &quot;default&quot;: Show first occurrence per location</span>
+<span class="sd">        - &quot;once&quot;: Show only once total</span>
+<span class="sd">        - &quot;module&quot;: Show once per module</span>
+<span class="sd">    category : type</span>
+<span class="sd">        Warning category (default: SciTeXWarning = all)</span>
+<span class="sd">    message : str, optional</span>
+<span class="sd">        Regex pattern to match warning message (not implemented yet)</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; import scitex.logging as logging</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.logging import UnitWarning</span>
+<span class="sd">    &gt;&gt;&gt; logging.filterwarnings(&quot;ignore&quot;, category=UnitWarning)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">valid_actions</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;ignore&quot;</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span> <span class="s2">&quot;always&quot;</span><span class="p">,</span> <span class="s2">&quot;default&quot;</span><span class="p">,</span> <span class="s2">&quot;once&quot;</span><span class="p">,</span> <span class="s2">&quot;module&quot;</span><span class="p">}</span>
+    <span class="k">if</span> <span class="n">action</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">valid_actions</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Invalid action &#39;</span><span class="si">{</span><span class="n">action</span><span class="si">}</span><span class="s2">&#39;. Must be one of: </span><span class="si">{</span><span class="n">valid_actions</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="n">_filters</span><span class="p">[</span><span class="n">category</span><span class="p">]</span> <span class="o">=</span> <span class="n">action</span></div>
+
+
+
+<div class="viewcode-block" id="resetwarnings">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.resetwarnings">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">resetwarnings</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Reset all warning filters to default behavior.&quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_filters</span><span class="p">,</span> <span class="n">_seen_warnings</span>
+    <span class="n">_filters</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="n">_seen_warnings</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_action</span><span class="p">(</span><span class="n">category</span><span class="p">:</span> <span class="n">Type</span><span class="p">[</span><span class="n">SciTeXWarning</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get the action for a warning category, checking inheritance.&quot;&quot;&quot;</span>
+    <span class="c1"># Check exact match first</span>
+    <span class="k">if</span> <span class="n">category</span> <span class="ow">in</span> <span class="n">_filters</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_filters</span><span class="p">[</span><span class="n">category</span><span class="p">]</span>
+
+    <span class="c1"># Check parent classes</span>
+    <span class="k">for</span> <span class="n">filter_cat</span><span class="p">,</span> <span class="n">action</span> <span class="ow">in</span> <span class="n">_filters</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">if</span> <span class="nb">issubclass</span><span class="p">(</span><span class="n">category</span><span class="p">,</span> <span class="n">filter_cat</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">action</span>
+
+    <span class="c1"># Default action</span>
+    <span class="k">return</span> <span class="s2">&quot;default&quot;</span>
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Warning Emission</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="warn">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.warn">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">warn</span><span class="p">(</span>
+    <span class="n">message</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">category</span><span class="p">:</span> <span class="n">Type</span><span class="p">[</span><span class="n">SciTeXWarning</span><span class="p">]</span> <span class="o">=</span> <span class="n">SciTeXWarning</span><span class="p">,</span>
+    <span class="n">stacklevel</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">2</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Emit a warning (like warnings.warn but integrated with scitex.logging).</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    message : str</span>
+<span class="sd">        Warning message</span>
+<span class="sd">    category : type</span>
+<span class="sd">        Warning category (default: SciTeXWarning)</span>
+<span class="sd">    stacklevel : int</span>
+<span class="sd">        Stack level for source location (default: 2 = caller)</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; import scitex.logging as logging</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.logging import UnitWarning</span>
+<span class="sd">    &gt;&gt;&gt; logging.warn(&quot;X axis has no units&quot;, UnitWarning)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">inspect</span>
+
+    <span class="n">action</span> <span class="o">=</span> <span class="n">_get_action</span><span class="p">(</span><span class="n">category</span><span class="p">)</span>
+
+    <span class="c1"># Handle action</span>
+    <span class="k">if</span> <span class="n">action</span> <span class="o">==</span> <span class="s2">&quot;ignore&quot;</span><span class="p">:</span>
+        <span class="k">return</span>
+
+    <span class="k">if</span> <span class="n">action</span> <span class="o">==</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="n">category</span><span class="p">(</span><span class="n">message</span><span class="p">)</span>
+
+    <span class="c1"># Get source location for &quot;once&quot;, &quot;module&quot;, &quot;default&quot; actions</span>
+    <span class="n">frame</span> <span class="o">=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">currentframe</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">_</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">stacklevel</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">frame</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">frame</span> <span class="o">=</span> <span class="n">frame</span><span class="o">.</span><span class="n">f_back</span>
+
+    <span class="n">location</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">frame</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">filename</span> <span class="o">=</span> <span class="n">frame</span><span class="o">.</span><span class="n">f_code</span><span class="o">.</span><span class="n">co_filename</span>
+        <span class="n">lineno</span> <span class="o">=</span> <span class="n">frame</span><span class="o">.</span><span class="n">f_lineno</span>
+        <span class="n">location</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">filename</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">lineno</span><span class="si">}</span><span class="s2">&quot;</span>
+
+    <span class="c1"># Check if already seen</span>
+    <span class="n">warn_key</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">category</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">message</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">location</span><span class="si">}</span><span class="s2">&quot;</span>
+
+    <span class="k">if</span> <span class="n">action</span> <span class="o">==</span> <span class="s2">&quot;once&quot;</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">warn_key</span> <span class="ow">in</span> <span class="n">_seen_warnings</span><span class="p">:</span>
+            <span class="k">return</span>
+        <span class="n">_seen_warnings</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">warn_key</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">action</span> <span class="o">==</span> <span class="s2">&quot;default&quot;</span><span class="p">:</span>
+        <span class="c1"># Show first per location</span>
+        <span class="n">loc_key</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">category</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">location</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">if</span> <span class="n">loc_key</span> <span class="ow">in</span> <span class="n">_seen_warnings</span><span class="p">:</span>
+            <span class="k">return</span>
+        <span class="n">_seen_warnings</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">loc_key</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">action</span> <span class="o">==</span> <span class="s2">&quot;module&quot;</span><span class="p">:</span>
+        <span class="c1"># Show once per module</span>
+        <span class="k">if</span> <span class="n">frame</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">module_key</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">category</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">frame</span><span class="o">.</span><span class="n">f_code</span><span class="o">.</span><span class="n">co_filename</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="k">if</span> <span class="n">module_key</span> <span class="ow">in</span> <span class="n">_seen_warnings</span><span class="p">:</span>
+                <span class="k">return</span>
+            <span class="n">_seen_warnings</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">module_key</span><span class="p">)</span>
+
+    <span class="c1"># Emit via scitex.logging</span>
+    <span class="n">logger</span> <span class="o">=</span> <span class="n">_logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="s2">&quot;scitex.warnings&quot;</span><span class="p">)</span>
+    <span class="n">category_name</span> <span class="o">=</span> <span class="n">category</span><span class="o">.</span><span class="vm">__name__</span>
+
+    <span class="c1"># Format: &quot;UnitWarning: message&quot;</span>
+    <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">category_name</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">message</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+
+<span class="c1"># =============================================================================</span>
+<span class="c1"># Convenience Warning Functions</span>
+<span class="c1"># =============================================================================</span>
+
+
+<div class="viewcode-block" id="warn_deprecated">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.warn_deprecated">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">warn_deprecated</span><span class="p">(</span>
+    <span class="n">old_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">new_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">version</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Issue a deprecation warning.&quot;&quot;&quot;</span>
+    <span class="n">message</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">old_name</span><span class="si">}</span><span class="s2"> is deprecated. Use </span><span class="si">{</span><span class="n">new_name</span><span class="si">}</span><span class="s2"> instead.&quot;</span>
+    <span class="k">if</span> <span class="n">version</span><span class="p">:</span>
+        <span class="n">message</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot; Will be removed in version </span><span class="si">{</span><span class="n">version</span><span class="si">}</span><span class="s2">.&quot;</span>
+    <span class="n">warn</span><span class="p">(</span><span class="n">message</span><span class="p">,</span> <span class="n">SciTeXDeprecationWarning</span><span class="p">,</span> <span class="n">stacklevel</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="warn_performance">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.warn_performance">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">warn_performance</span><span class="p">(</span><span class="n">operation</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">suggestion</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Issue a performance warning.&quot;&quot;&quot;</span>
+    <span class="n">message</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;Performance warning in </span><span class="si">{</span><span class="n">operation</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">suggestion</span><span class="si">}</span><span class="s2">&quot;</span>
+    <span class="n">warn</span><span class="p">(</span><span class="n">message</span><span class="p">,</span> <span class="n">PerformanceWarning</span><span class="p">,</span> <span class="n">stacklevel</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="warn_data_loss">
+<a class="viewcode-back" href="../../source/api/logging.html#scitex.logging.warn_data_loss">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">warn_data_loss</span><span class="p">(</span><span class="n">operation</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">detail</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Issue a data loss warning.&quot;&quot;&quot;</span>
+    <span class="n">message</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;Potential data loss in </span><span class="si">{</span><span class="n">operation</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">detail</span><span class="si">}</span><span class="s2">&quot;</span>
+    <span class="n">warn</span><span class="p">(</span><span class="n">message</span><span class="p">,</span> <span class="n">DataLossWarning</span><span class="p">,</span> <span class="n">stacklevel</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="c1"># Warning categories</span>
+    <span class="s2">&quot;SciTeXWarning&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;UnitWarning&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;StyleWarning&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;SciTeXDeprecationWarning&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;PerformanceWarning&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;DataLossWarning&quot;</span><span class="p">,</span>
+    <span class="c1"># Functions</span>
+    <span class="s2">&quot;warn&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;filterwarnings&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;resetwarnings&quot;</span><span class="p">,</span>
+    <span class="c1"># Convenience functions</span>
+    <span class="s2">&quot;warn_deprecated&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;warn_performance&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;warn_data_loss&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_msword.html b/src/scitex/_sphinx_html/_modules/scitex_msword.html
new file mode 100644
index 000000000..706f25cc8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_msword.html
@@ -0,0 +1,989 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_msword &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
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+      <li class="breadcrumb-item active">scitex_msword</li>
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+             
+  <h1>Source code for scitex_msword</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2025-12-11 15:15:00</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/msword/__init__.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">MS Word (DOCX) import/export utilities for SciTeX.</span>
+
+<span class="sd">This module provides high-level functions to convert between</span>
+<span class="sd">MS Word .docx files and SciTeX&#39;s internal writer document model.</span>
+
+<span class="sd">Strategy:</span>
+<span class="sd">---------</span>
+<span class="sd">- Word users write text only (paragraphs, minimal formatting)</span>
+<span class="sd">- SciTeX handles: figures, tables, references, LaTeX generation</span>
+<span class="sd">- SciTeX JSON is the &quot;source of truth&quot;, Word is just a view/edit layer</span>
+
+<span class="sd">Typical usage:</span>
+<span class="sd">--------------</span>
+<span class="sd">    from scitex_msword import load_docx, save_docx, list_profiles</span>
+
+<span class="sd">    # Import from Word</span>
+<span class="sd">    doc = load_docx(&quot;input.docx&quot;, profile=&quot;generic&quot;)</span>
+
+<span class="sd">    # Manipulate via scitex.writer...</span>
+<span class="sd">    # doc.normalize()</span>
+
+<span class="sd">    # Export to Word (different journal template)</span>
+<span class="sd">    save_docx(doc, &quot;output.docx&quot;, profile=&quot;mdpi-ijerph&quot;)</span>
+
+<span class="sd">Available profiles:</span>
+<span class="sd">-------------------</span>
+<span class="sd">- generic: Standard Word with Heading 1/2/3</span>
+<span class="sd">- mdpi-ijerph: MDPI IJERPH journal template</span>
+<span class="sd">- resna-2025: RESNA 2025 scientific paper template</span>
+<span class="sd">- iop-double-anonymous: IOP double-anonymous template</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">importlib.metadata</span><span class="w"> </span><span class="kn">import</span> <span class="n">PackageNotFoundError</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">importlib.metadata</span><span class="w"> </span><span class="kn">import</span> <span class="n">version</span> <span class="k">as</span> <span class="n">_v</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">__version__</span> <span class="o">=</span> <span class="n">_v</span><span class="p">(</span><span class="s2">&quot;scitex-msword&quot;</span><span class="p">)</span>
+    <span class="k">except</span> <span class="n">PackageNotFoundError</span><span class="p">:</span>
+        <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0+local&quot;</span>
+    <span class="k">del</span> <span class="n">_v</span><span class="p">,</span> <span class="n">PackageNotFoundError</span>
+<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>  <span class="c1"># pragma: no cover — only on ancient Pythons</span>
+    <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0+local&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.bold</span><span class="w"> </span><span class="kn">import</span> <span class="n">preserve_bold_tokens</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.comments</span><span class="w"> </span><span class="kn">import</span> <span class="n">apply_comments_as_edits</span><span class="p">,</span> <span class="n">extract_comments</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.diff</span><span class="w"> </span><span class="kn">import</span> <span class="n">diff_docx</span><span class="p">,</span> <span class="n">summarize_diff</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.highlights</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">clear_highlights</span><span class="p">,</span>
+    <span class="n">extract_highlights</span><span class="p">,</span>
+    <span class="n">mark_additions</span><span class="p">,</span>
+    <span class="n">mark_modifications</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.profiles</span><span class="w"> </span><span class="kn">import</span> <span class="n">BaseWordProfile</span><span class="p">,</span> <span class="n">get_profile</span><span class="p">,</span> <span class="n">list_profiles</span><span class="p">,</span> <span class="n">register_profile</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.reader</span><span class="w"> </span><span class="kn">import</span> <span class="n">WordReader</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.track_changes</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">accept_all_tracked_changes</span><span class="p">,</span>
+    <span class="n">enable_track_changes</span><span class="p">,</span>
+    <span class="n">extract_tracked_changes</span><span class="p">,</span>
+    <span class="n">is_track_changes_enabled</span><span class="p">,</span>
+    <span class="n">reject_all_tracked_changes</span><span class="p">,</span>
+    <span class="n">wrap_as_tracked_deletion</span><span class="p">,</span>
+    <span class="n">wrap_as_tracked_insertion</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.utils</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">create_post_import_hook</span><span class="p">,</span>
+    <span class="n">link_captions_to_images</span><span class="p">,</span>
+    <span class="n">link_captions_to_images_by_proximity</span><span class="p">,</span>
+    <span class="n">normalize_section_headings</span><span class="p">,</span>
+    <span class="n">validate_document</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.writer</span><span class="w"> </span><span class="kn">import</span> <span class="n">WordWriter</span>
+
+
+<div class="viewcode-block" id="load_docx">
+<a class="viewcode-back" href="../source/api/msword.html#scitex.msword.load_docx">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">load_docx</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="n">profile</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">extract_images</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Load a DOCX file and convert it into a SciTeX writer document.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str | Path</span>
+<span class="sd">        Path to the .docx file.</span>
+<span class="sd">    profile : str | None</span>
+<span class="sd">        Optional profile name that specifies how to interpret Word styles</span>
+<span class="sd">        (e.g., &quot;mdpi-ijerph&quot;, &quot;resna-2025&quot;). If None, &quot;generic&quot; is used.</span>
+<span class="sd">    extract_images : bool</span>
+<span class="sd">        If True, extract embedded images and store references.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        A SciTeX writer document structure containing:</span>
+<span class="sd">        - blocks: List of document blocks (headings, paragraphs, captions, etc.)</span>
+<span class="sd">        - metadata: Profile and source file information</span>
+<span class="sd">        - images: Extracted image references (if extract_images=True)</span>
+<span class="sd">        - references: Parsed reference entries</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword import load_docx</span>
+<span class="sd">    &gt;&gt;&gt; doc = load_docx(&quot;manuscript.docx&quot;, profile=&quot;mdpi-ijerph&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; print(doc[&quot;metadata&quot;][&quot;profile&quot;])</span>
+<span class="sd">    &#39;mdpi-ijerph&#39;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="n">profile_obj</span><span class="p">:</span> <span class="n">BaseWordProfile</span> <span class="o">=</span> <span class="n">get_profile</span><span class="p">(</span><span class="n">profile</span><span class="p">)</span>
+    <span class="n">reader</span> <span class="o">=</span> <span class="n">WordReader</span><span class="p">(</span><span class="n">profile</span><span class="o">=</span><span class="n">profile_obj</span><span class="p">,</span> <span class="n">extract_images</span><span class="o">=</span><span class="n">extract_images</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">reader</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">path</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="save_docx">
+<a class="viewcode-back" href="../source/api/msword.html#scitex.msword.save_docx">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">save_docx</span><span class="p">(</span>
+    <span class="n">writer_doc</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">|</span> <span class="n">Any</span><span class="p">,</span>
+    <span class="n">path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="n">profile</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">overwrite</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">template_path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Save a SciTeX writer document as a DOCX file.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    writer_doc : dict | Any</span>
+<span class="sd">        SciTeX writer document instance to export.</span>
+<span class="sd">    path : str | Path</span>
+<span class="sd">        Output path for the .docx file.</span>
+<span class="sd">    profile : str | None</span>
+<span class="sd">        Optional profile name that controls how sections, headings,</span>
+<span class="sd">        figures, tables and references are mapped to Word styles.</span>
+<span class="sd">        If None, &quot;generic&quot; is used.</span>
+<span class="sd">    overwrite : bool</span>
+<span class="sd">        If False and the file already exists, raises FileExistsError.</span>
+<span class="sd">    template_path : str | Path | None</span>
+<span class="sd">        Optional path to a Word template (.dotx/.docx) to use as base.</span>
+<span class="sd">        This allows using journal-specific formatting.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Path</span>
+<span class="sd">        The path to the written .docx file.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword import save_docx</span>
+<span class="sd">    &gt;&gt;&gt; save_docx(doc, &quot;submission_resna_2025.docx&quot;, profile=&quot;resna-2025&quot;)</span>
+<span class="sd">    PosixPath(&#39;submission_resna_2025.docx&#39;)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">output_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">output_path</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">overwrite</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">FileExistsError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;File already exists: </span><span class="si">{</span><span class="n">output_path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="n">profile_obj</span><span class="p">:</span> <span class="n">BaseWordProfile</span> <span class="o">=</span> <span class="n">get_profile</span><span class="p">(</span><span class="n">profile</span><span class="p">)</span>
+    <span class="n">writer</span> <span class="o">=</span> <span class="n">WordWriter</span><span class="p">(</span><span class="n">profile</span><span class="o">=</span><span class="n">profile_obj</span><span class="p">,</span> <span class="n">template_path</span><span class="o">=</span><span class="n">template_path</span><span class="p">)</span>
+    <span class="n">writer</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">writer_doc</span><span class="p">,</span> <span class="n">output_path</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">output_path</span></div>
+
+
+
+<div class="viewcode-block" id="convert_docx_to_tex">
+<a class="viewcode-back" href="../source/api/msword.html#scitex.msword.convert_docx_to_tex">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">convert_docx_to_tex</span><span class="p">(</span>
+    <span class="n">input_path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="n">output_path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="n">profile</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">image_dir</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="n">Path</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">link_images</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">link_mode</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;by-number&quot;</span><span class="p">,</span>
+    <span class="n">normalize_headings</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">validate</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Convert a DOCX file directly to LaTeX.</span>
+
+<span class="sd">    This is a convenience function that:</span>
+<span class="sd">    1. Loads the DOCX file into SciTeX intermediate format</span>
+<span class="sd">    2. (Optionally) normalizes headings</span>
+<span class="sd">    3. (Optionally) links figure captions to images</span>
+<span class="sd">    4. (Optionally) validates the document and adds warnings</span>
+<span class="sd">    5. Exports to LaTeX (including figures via image_dir)</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    input_path : str | Path</span>
+<span class="sd">        Path to the input .docx file.</span>
+<span class="sd">    output_path : str | Path</span>
+<span class="sd">        Path for the output .tex file.</span>
+<span class="sd">    profile : str | None</span>
+<span class="sd">        Word profile for interpreting styles</span>
+<span class="sd">        (e.g., &quot;resna-2025&quot;, &quot;iop-double-anonymous&quot;).</span>
+<span class="sd">    image_dir : str | Path | None, optional</span>
+<span class="sd">        Directory where extracted figure image files will be saved.</span>
+<span class="sd">        If None, the LaTeX exporter will create &quot;&lt;tex_stem&gt;_figures&quot;</span>
+<span class="sd">        next to `output_path`.</span>
+<span class="sd">    link_images : bool, default True</span>
+<span class="sd">        Whether to link figure captions to extracted images so that</span>
+<span class="sd">        LaTeX can generate \\includegraphics inside figure environments.</span>
+<span class="sd">    link_mode : {&quot;by-number&quot;, &quot;by-proximity&quot;}, default &quot;by-number&quot;</span>
+<span class="sd">        Strategy for linking captions to images:</span>
+<span class="sd">        - &quot;by-number&quot;: Figure 1 -&gt; first image, Figure 2 -&gt; second image...</span>
+<span class="sd">        - &quot;by-proximity&quot;: assign images in document order, useful when</span>
+<span class="sd">          figure numbers and image order don&#39;t match.</span>
+<span class="sd">    normalize_headings : bool, default True</span>
+<span class="sd">        If True, apply common heading normalizations</span>
+<span class="sd">        (e.g., &quot;intro&quot; -&gt; &quot;Introduction&quot;).</span>
+<span class="sd">    validate : bool, default True</span>
+<span class="sd">        If True, run basic structural checks and populate</span>
+<span class="sd">        doc[&quot;warnings&quot;] with any issues.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Path</span>
+<span class="sd">        The path to the written .tex file.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword import convert_docx_to_tex</span>
+<span class="sd">    &gt;&gt;&gt; convert_docx_to_tex(</span>
+<span class="sd">    ...     &quot;RESNA 2025 Scientific Paper Template.docx&quot;,</span>
+<span class="sd">    ...     &quot;manuscript.tex&quot;,</span>
+<span class="sd">    ...     profile=&quot;resna-2025&quot;,</span>
+<span class="sd">    ...     image_dir=&quot;figures&quot;,</span>
+<span class="sd">    ... )</span>
+<span class="sd">    PosixPath(&#39;manuscript.tex&#39;)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Lazy import: convert_docx_to_tex requires scitex (or scitex-tex) for the</span>
+    <span class="c1"># final .tex serialization step. Other scitex_msword functions don&#39;t need it.</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_tex</span><span class="w"> </span><span class="kn">import</span> <span class="n">export_tex</span>
+    <span class="k">except</span> <span class="ne">ImportError</span> <span class="k">as</span> <span class="n">_e</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;convert_docx_to_tex requires the &#39;scitex&#39; package (provides scitex.tex). &quot;</span>
+            <span class="s2">&quot;Install with: pip install scitex&quot;</span>
+        <span class="p">)</span> <span class="kn">from</span><span class="w"> </span><span class="nn">_e</span>
+
+    <span class="c1"># 1. DOCX -&gt; SciTeX intermediate format</span>
+    <span class="n">doc</span> <span class="o">=</span> <span class="n">load_docx</span><span class="p">(</span><span class="n">input_path</span><span class="p">,</span> <span class="n">profile</span><span class="o">=</span><span class="n">profile</span><span class="p">,</span> <span class="n">extract_images</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="c1"># 2. Normalize headings (optional)</span>
+    <span class="k">if</span> <span class="n">normalize_headings</span><span class="p">:</span>
+        <span class="n">doc</span> <span class="o">=</span> <span class="n">normalize_section_headings</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+
+    <span class="c1"># 3. Link captions to images (optional)</span>
+    <span class="k">if</span> <span class="n">link_images</span> <span class="ow">and</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;images&quot;</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">link_mode</span> <span class="o">==</span> <span class="s2">&quot;by-proximity&quot;</span><span class="p">:</span>
+            <span class="n">doc</span> <span class="o">=</span> <span class="n">link_captions_to_images_by_proximity</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># Default: link by figure number</span>
+            <span class="n">doc</span> <span class="o">=</span> <span class="n">link_captions_to_images</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+
+    <span class="c1"># 4. Validate document structure (optional)</span>
+    <span class="k">if</span> <span class="n">validate</span><span class="p">:</span>
+        <span class="n">doc</span> <span class="o">=</span> <span class="n">validate_document</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+
+    <span class="c1"># 5. SciTeX -&gt; LaTeX (with figures)</span>
+    <span class="k">return</span> <span class="n">export_tex</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">output_path</span><span class="p">,</span> <span class="n">image_dir</span><span class="o">=</span><span class="n">image_dir</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;__version__&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;load_docx&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;save_docx&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;convert_docx_to_tex&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;list_profiles&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get_profile&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;register_profile&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;BaseWordProfile&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;WordReader&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;WordWriter&quot;</span><span class="p">,</span>
+    <span class="c1"># Utility functions for post-processing</span>
+    <span class="s2">&quot;link_captions_to_images&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;link_captions_to_images_by_proximity&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;normalize_section_headings&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;validate_document&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;create_post_import_hook&quot;</span><span class="p">,</span>
+    <span class="c1"># Diff API (BOOST v16 dogfooding)</span>
+    <span class="s2">&quot;diff_docx&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;summarize_diff&quot;</span><span class="p">,</span>
+    <span class="c1"># Highlight API (BOOST v16 visual marking)</span>
+    <span class="s2">&quot;mark_additions&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;mark_modifications&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;extract_highlights&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;clear_highlights&quot;</span><span class="p">,</span>
+    <span class="c1"># Bold-token preservation (BOOST v16 Japanese keyword emphasis)</span>
+    <span class="s2">&quot;preserve_bold_tokens&quot;</span><span class="p">,</span>
+    <span class="c1"># Comment extraction (+ narrow REPLACE-grammar application)</span>
+    <span class="s2">&quot;extract_comments&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;apply_comments_as_edits&quot;</span><span class="p">,</span>
+    <span class="c1"># Track-Changes API (BOOST post-v16 dogfooding)</span>
+    <span class="s2">&quot;enable_track_changes&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;is_track_changes_enabled&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;wrap_as_tracked_insertion&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;wrap_as_tracked_deletion&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;extract_tracked_changes&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;accept_all_tracked_changes&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;reject_all_tracked_changes&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_msword/comments.html b/src/scitex/_sphinx_html/_modules/scitex_msword/comments.html
new file mode 100644
index 000000000..b2ab3405e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_msword/comments.html
@@ -0,0 +1,1031 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_msword.comments &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
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+        </div>
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+  <h1>Source code for scitex_msword.comments</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2026-06-02 00:00:00</span>
+<span class="c1"># File: src/scitex_msword/comments.py</span>
+<span class="c1">#</span>
+<span class="c1"># Part of scitex-msword (AGPL-3.0-only). See LICENSE at the repo root.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Comment extraction and (limited) application for python-docx Documents.</span>
+
+<span class="sd">Word stores comments in ``word/comments.xml`` inside the .docx ZIP, while</span>
+<span class="sd">the comment *anchors* (i.e. the ranges the comment refers to) live in</span>
+<span class="sd">``word/document.xml`` as ``commentRangeStart`` / ``commentRangeEnd``</span>
+<span class="sd">sibling elements with an ``w:id`` attribute matching the comment.</span>
+
+<span class="sd">This module exposes :func:`extract_comments` for reading them back into</span>
+<span class="sd">a structured list and :func:`apply_comments_as_edits` which honors a</span>
+<span class="sd">narrow &quot;REPLACE:&quot; comment grammar to perform automated edits.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">zipfile</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">xml.etree</span><span class="w"> </span><span class="kn">import</span> <span class="n">ElementTree</span> <span class="k">as</span> <span class="n">ET</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">docx</span>  <span class="c1"># type: ignore[import-untyped]</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.document</span><span class="w"> </span><span class="kn">import</span> <span class="n">Document</span> <span class="k">as</span> <span class="n">DocxDocument</span>  <span class="c1"># type: ignore[import-untyped]</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.oxml.ns</span><span class="w"> </span><span class="kn">import</span> <span class="n">qn</span>  <span class="c1"># type: ignore[import-untyped]</span>
+
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">True</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="ne">Exception</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="k">except</span> <span class="ne">ImportError</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">False</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span> <span class="o">=</span> <span class="n">exc</span>
+    <span class="n">DocxDocument</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment,misc]</span>
+    <span class="n">qn</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment]</span>
+
+
+<span class="n">_W_NS</span> <span class="o">=</span> <span class="s2">&quot;http://schemas.openxmlformats.org/wordprocessingml/2006/main&quot;</span>
+<span class="n">_NS</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;w&quot;</span><span class="p">:</span> <span class="n">_W_NS</span><span class="p">}</span>
+
+<span class="c1"># Grammar for apply_comments_as_edits — intentionally narrow.</span>
+<span class="n">_REPLACE_RE</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^\s*REPLACE\s*:\s*(.+?)\s*$&quot;</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">IGNORECASE</span> <span class="o">|</span> <span class="n">re</span><span class="o">.</span><span class="n">DOTALL</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_ensure_docx_available</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">DOCX_AVAILABLE</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;python-docx is required for scitex_msword.comments. &quot;</span>
+            <span class="s2">&quot;Install it via `pip install python-docx`.&quot;</span>
+        <span class="p">)</span> <span class="kn">from</span><span class="w"> </span><span class="nn">_DOCX_IMPORT_ERROR</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_docx_path</span><span class="p">(</span><span class="n">doc</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">,</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the on-disk path backing a Document, or None if in-memory.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">)):</span>
+        <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+    <span class="n">pkg</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="s2">&quot;part&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">pkg</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="n">pkg_pkg</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">pkg</span><span class="p">,</span> <span class="s2">&quot;package&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">pkg_pkg</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="n">pkg_path</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">pkg_pkg</span><span class="p">,</span> <span class="s2">&quot;_path&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">pkg_path</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">pkg_path</span><span class="p">)</span>
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_read_comments_xml</span><span class="p">(</span><span class="n">source</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">,</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">bytes</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the raw word/comments.xml bytes, or None if absent.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">source</span><span class="p">,</span> <span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">)):</span>
+        <span class="n">zip_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">source</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="c1"># In-memory Document: read straight from the OPC part.</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">part</span> <span class="ow">in</span> <span class="n">source</span><span class="o">.</span><span class="n">part</span><span class="o">.</span><span class="n">package</span><span class="o">.</span><span class="n">iter_parts</span><span class="p">():</span>
+                <span class="k">if</span> <span class="n">part</span><span class="o">.</span><span class="n">partname</span> <span class="o">==</span> <span class="s2">&quot;/word/comments.xml&quot;</span><span class="p">:</span>
+                    <span class="k">return</span> <span class="n">part</span><span class="o">.</span><span class="n">blob</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="k">pass</span>
+        <span class="n">path</span> <span class="o">=</span> <span class="n">_docx_path</span><span class="p">(</span><span class="n">source</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">path</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">None</span>
+        <span class="n">zip_path</span> <span class="o">=</span> <span class="n">path</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">zip_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">with</span> <span class="n">zipfile</span><span class="o">.</span><span class="n">ZipFile</span><span class="p">(</span><span class="n">zip_path</span><span class="p">)</span> <span class="k">as</span> <span class="n">zf</span><span class="p">:</span>
+            <span class="k">if</span> <span class="s2">&quot;word/comments.xml&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">zf</span><span class="o">.</span><span class="n">namelist</span><span class="p">():</span>
+                <span class="k">return</span> <span class="kc">None</span>
+            <span class="k">return</span> <span class="n">zf</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="s2">&quot;word/comments.xml&quot;</span><span class="p">)</span>
+    <span class="k">except</span> <span class="n">zipfile</span><span class="o">.</span><span class="n">BadZipFile</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_parse_comments_xml</span><span class="p">(</span><span class="n">blob</span><span class="p">:</span> <span class="nb">bytes</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parse word/comments.xml into ``{comment_id: {author, text, date}}``.&quot;&quot;&quot;</span>
+    <span class="n">root</span> <span class="o">=</span> <span class="n">ET</span><span class="o">.</span><span class="n">fromstring</span><span class="p">(</span><span class="n">blob</span><span class="p">)</span>
+    <span class="n">comments</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">root</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="s2">&quot;w:comment&quot;</span><span class="p">,</span> <span class="n">_NS</span><span class="p">):</span>
+        <span class="n">cid</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:id&quot;</span><span class="p">))</span> <span class="k">if</span> <span class="n">qn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">id&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">cid</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="n">author</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:author&quot;</span><span class="p">))</span> <span class="k">if</span> <span class="n">qn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">author&quot;</span><span class="p">)</span>
+        <span class="p">)</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span>
+        <span class="n">date</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:date&quot;</span><span class="p">))</span> <span class="k">if</span> <span class="n">qn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">date&quot;</span><span class="p">)</span>
+        <span class="p">)</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span>
+        <span class="n">texts</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="n">c</span><span class="o">.</span><span class="n">iter</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">t&quot;</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">t</span><span class="o">.</span><span class="n">text</span><span class="p">:</span>
+                <span class="n">texts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">t</span><span class="o">.</span><span class="n">text</span><span class="p">)</span>
+        <span class="n">comments</span><span class="p">[</span><span class="nb">str</span><span class="p">(</span><span class="n">cid</span><span class="p">)]</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">cid</span><span class="p">)</span> <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">cid</span><span class="p">)</span><span class="o">.</span><span class="n">isdigit</span><span class="p">()</span> <span class="k">else</span> <span class="n">cid</span><span class="p">,</span>
+            <span class="s2">&quot;author&quot;</span><span class="p">:</span> <span class="n">author</span><span class="p">,</span>
+            <span class="s2">&quot;date&quot;</span><span class="p">:</span> <span class="n">date</span><span class="p">,</span>
+            <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">texts</span><span class="p">),</span>
+        <span class="p">}</span>
+    <span class="k">return</span> <span class="n">comments</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_scan_anchors</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Walk the document body and locate comment anchor ranges.</span>
+
+<span class="sd">    Returns ``{comment_id_str: {anchor_text, paragraph_range}}``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">paragraphs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">document</span><span class="o">.</span><span class="n">paragraphs</span><span class="p">)</span>
+    <span class="n">anchors</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="c1"># Track which comments are currently open and at which paragraph they started.</span>
+    <span class="n">open_comments</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="c1"># Buffer for in-progress anchor text per comment id.</span>
+    <span class="n">open_text</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="p">{}</span>
+
+    <span class="n">id_attr</span> <span class="o">=</span> <span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:id&quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">qn</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">id&quot;</span>
+
+    <span class="k">for</span> <span class="n">pi</span><span class="p">,</span> <span class="n">para</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">paragraphs</span><span class="p">):</span>
+        <span class="c1"># We want a stream of (kind, payload) events from the paragraph XML.</span>
+        <span class="k">for</span> <span class="n">elem</span> <span class="ow">in</span> <span class="n">para</span><span class="o">.</span><span class="n">_p</span><span class="o">.</span><span class="n">iter</span><span class="p">():</span>
+            <span class="n">tag</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">tag</span>
+            <span class="k">if</span> <span class="n">tag</span> <span class="o">==</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">commentRangeStart&quot;</span><span class="p">:</span>
+                <span class="n">cid</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">id_attr</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">cid</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">open_comments</span><span class="p">[</span><span class="n">cid</span><span class="p">]</span> <span class="o">=</span> <span class="n">pi</span>
+                    <span class="n">open_text</span><span class="o">.</span><span class="n">setdefault</span><span class="p">(</span><span class="n">cid</span><span class="p">,</span> <span class="p">[])</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">commentRangeEnd&quot;</span><span class="p">:</span>
+                <span class="n">cid</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">id_attr</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">cid</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">cid</span> <span class="ow">in</span> <span class="n">open_comments</span><span class="p">:</span>
+                    <span class="n">start_p</span> <span class="o">=</span> <span class="n">open_comments</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="n">cid</span><span class="p">)</span>
+                    <span class="n">text</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">open_text</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="n">cid</span><span class="p">,</span> <span class="p">[]))</span>
+                    <span class="n">anchors</span><span class="p">[</span><span class="n">cid</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                        <span class="s2">&quot;anchor_text&quot;</span><span class="p">:</span> <span class="n">text</span><span class="p">,</span>
+                        <span class="s2">&quot;paragraph_range&quot;</span><span class="p">:</span> <span class="p">[</span><span class="n">start_p</span><span class="p">,</span> <span class="n">pi</span><span class="p">],</span>
+                    <span class="p">}</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">t&quot;</span><span class="p">:</span>
+                <span class="c1"># Any text run that runs while a comment is open contributes</span>
+                <span class="c1"># to that comment&#39;s anchor text.</span>
+                <span class="k">if</span> <span class="n">elem</span><span class="o">.</span><span class="n">text</span> <span class="ow">and</span> <span class="n">open_comments</span><span class="p">:</span>
+                    <span class="k">for</span> <span class="n">cid</span> <span class="ow">in</span> <span class="n">open_comments</span><span class="p">:</span>
+                        <span class="n">open_text</span><span class="p">[</span><span class="n">cid</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">elem</span><span class="o">.</span><span class="n">text</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">anchors</span>
+
+
+<div class="viewcode-block" id="extract_comments">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.extract_comments">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">extract_comments</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">,</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">],</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Extract Word comments from a .docx file or open Document.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : str | Path | docx.Document</span>
+<span class="sd">        Path to the .docx or an already-open Document.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list[dict]</span>
+<span class="sd">        One entry per comment::</span>
+
+<span class="sd">            {&quot;id&quot;: int | str,</span>
+<span class="sd">             &quot;author&quot;: str,</span>
+<span class="sd">             &quot;date&quot;: str,           # ISO timestamp string, may be empty</span>
+<span class="sd">             &quot;text&quot;: str,           # comment body</span>
+<span class="sd">             &quot;anchor_text&quot;: str,    # text the comment is anchored to</span>
+<span class="sd">             &quot;paragraph_range&quot;: [start, end]}</span>
+
+<span class="sd">        ``anchor_text`` and ``paragraph_range`` default to ``&quot;&quot;`` and</span>
+<span class="sd">        ``[None, None]`` when no in-document anchor can be located.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_msword.comments import extract_comments</span>
+<span class="sd">    &gt;&gt;&gt; comments = extract_comments(&quot;boost-v16.docx&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; [c[&quot;text&quot;] for c in comments]</span>
+<span class="sd">    [&#39;Please rephrase this&#39;, &#39;REPLACE: Use the new wording&#39;]</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">blob</span> <span class="o">=</span> <span class="n">_read_comments_xml</span><span class="p">(</span><span class="n">document</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">blob</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+    <span class="n">parsed</span> <span class="o">=</span> <span class="n">_parse_comments_xml</span><span class="p">(</span><span class="n">blob</span><span class="p">)</span>
+
+    <span class="c1"># Anchor scanning needs an open Document.</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">document</span><span class="p">,</span> <span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">)):</span>
+        <span class="n">doc_obj</span> <span class="o">=</span> <span class="n">docx</span><span class="o">.</span><span class="n">Document</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">document</span><span class="p">))</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">doc_obj</span> <span class="o">=</span> <span class="n">document</span>
+    <span class="n">anchors</span> <span class="o">=</span> <span class="n">_scan_anchors</span><span class="p">(</span><span class="n">doc_obj</span><span class="p">)</span>
+
+    <span class="n">out</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">cid</span><span class="p">,</span> <span class="n">meta</span> <span class="ow">in</span> <span class="n">parsed</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="n">anchor</span> <span class="o">=</span> <span class="n">anchors</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">cid</span><span class="p">,</span> <span class="p">{})</span>
+        <span class="n">out</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+            <span class="p">{</span>
+                <span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">meta</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">],</span>
+                <span class="s2">&quot;author&quot;</span><span class="p">:</span> <span class="n">meta</span><span class="p">[</span><span class="s2">&quot;author&quot;</span><span class="p">],</span>
+                <span class="s2">&quot;date&quot;</span><span class="p">:</span> <span class="n">meta</span><span class="p">[</span><span class="s2">&quot;date&quot;</span><span class="p">],</span>
+                <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="n">meta</span><span class="p">[</span><span class="s2">&quot;text&quot;</span><span class="p">],</span>
+                <span class="s2">&quot;anchor_text&quot;</span><span class="p">:</span> <span class="n">anchor</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;anchor_text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">),</span>
+                <span class="s2">&quot;paragraph_range&quot;</span><span class="p">:</span> <span class="n">anchor</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;paragraph_range&quot;</span><span class="p">,</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">]),</span>
+            <span class="p">}</span>
+        <span class="p">)</span>
+    <span class="c1"># Sort by numeric id when possible for stable output.</span>
+    <span class="n">out</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">d</span><span class="p">:</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">],</span> <span class="nb">str</span><span class="p">),</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">]))</span>
+    <span class="k">return</span> <span class="n">out</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_replace_in_paragraph</span><span class="p">(</span><span class="n">paragraph</span><span class="p">,</span> <span class="n">anchor</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">replacement</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Replace ``anchor`` text in ``paragraph`` with ``replacement``.</span>
+
+<span class="sd">    Returns True if a replacement occurred.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">text</span> <span class="o">=</span> <span class="n">paragraph</span><span class="o">.</span><span class="n">text</span>
+    <span class="k">if</span> <span class="n">anchor</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">text</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">False</span>
+    <span class="n">new_text</span> <span class="o">=</span> <span class="n">text</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">anchor</span><span class="p">,</span> <span class="n">replacement</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+    <span class="c1"># Rebuild paragraph runs with the new text, keeping first run&#39;s formatting.</span>
+    <span class="n">first_run_fmt</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">if</span> <span class="n">paragraph</span><span class="o">.</span><span class="n">runs</span><span class="p">:</span>
+        <span class="n">r</span> <span class="o">=</span> <span class="n">paragraph</span><span class="o">.</span><span class="n">runs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+        <span class="n">first_run_fmt</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="s2">&quot;bold&quot;</span><span class="p">:</span> <span class="n">r</span><span class="o">.</span><span class="n">bold</span><span class="p">,</span>
+            <span class="s2">&quot;italic&quot;</span><span class="p">:</span> <span class="n">r</span><span class="o">.</span><span class="n">italic</span><span class="p">,</span>
+            <span class="s2">&quot;underline&quot;</span><span class="p">:</span> <span class="n">r</span><span class="o">.</span><span class="n">underline</span><span class="p">,</span>
+        <span class="p">}</span>
+    <span class="c1"># Clear existing runs.</span>
+    <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">paragraph</span><span class="o">.</span><span class="n">_p</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:r&quot;</span><span class="p">))):</span>
+        <span class="n">paragraph</span><span class="o">.</span><span class="n">_p</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">r</span><span class="p">)</span>
+    <span class="n">new_run</span> <span class="o">=</span> <span class="n">paragraph</span><span class="o">.</span><span class="n">add_run</span><span class="p">(</span><span class="n">new_text</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">first_run_fmt</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;bold&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">new_run</span><span class="o">.</span><span class="n">bold</span> <span class="o">=</span> <span class="n">first_run_fmt</span><span class="p">[</span><span class="s2">&quot;bold&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">first_run_fmt</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;italic&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">new_run</span><span class="o">.</span><span class="n">italic</span> <span class="o">=</span> <span class="n">first_run_fmt</span><span class="p">[</span><span class="s2">&quot;italic&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">first_run_fmt</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;underline&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">new_run</span><span class="o">.</span><span class="n">underline</span> <span class="o">=</span> <span class="n">first_run_fmt</span><span class="p">[</span><span class="s2">&quot;underline&quot;</span><span class="p">]</span>
+    <span class="k">return</span> <span class="kc">True</span>
+
+
+<div class="viewcode-block" id="apply_comments_as_edits">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.apply_comments_as_edits">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">apply_comments_as_edits</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">comments</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">grammar</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;replace&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Apply comments to the document body using a narrow grammar.</span>
+
+<span class="sd">    Only the ``REPLACE:`` grammar is currently supported, i.e. a comment</span>
+<span class="sd">    whose body matches ``r&quot;^\\s*REPLACE\\s*:\\s*(.+?)\\s*$&quot;`` is interpreted</span>
+<span class="sd">    as &quot;replace this comment&#39;s anchor text with the trailing payload&quot;.</span>
+<span class="sd">    Other comments are ignored.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        The Document to mutate in place.</span>
+<span class="sd">    comments : list[dict], optional</span>
+<span class="sd">        Pre-extracted comments (as returned by :func:`extract_comments`).</span>
+<span class="sd">        If ``None``, the comments are read from ``document`` directly.</span>
+<span class="sd">    grammar : str, default &quot;replace&quot;</span>
+<span class="sd">        Reserved for future expansion. Currently only ``&quot;replace&quot;``</span>
+<span class="sd">        is recognised.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Summary: ``{&quot;applied&quot;: int, &quot;skipped&quot;: int, &quot;details&quot;: [...]}``.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_msword.comments import apply_comments_as_edits</span>
+<span class="sd">    &gt;&gt;&gt; summary = apply_comments_as_edits(doc)</span>
+<span class="sd">    &gt;&gt;&gt; summary[&quot;applied&quot;]</span>
+<span class="sd">    2</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">grammar</span> <span class="o">!=</span> <span class="s2">&quot;replace&quot;</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Unsupported grammar: </span><span class="si">{</span><span class="n">grammar</span><span class="si">!r}</span><span class="s2">. Only &#39;replace&#39; is implemented.&quot;</span>
+        <span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">comments</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">comments</span> <span class="o">=</span> <span class="n">extract_comments</span><span class="p">(</span><span class="n">document</span><span class="p">)</span>
+
+    <span class="n">paragraphs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">document</span><span class="o">.</span><span class="n">paragraphs</span><span class="p">)</span>
+    <span class="n">applied</span> <span class="o">=</span> <span class="mi">0</span>
+    <span class="n">skipped</span> <span class="o">=</span> <span class="mi">0</span>
+    <span class="n">details</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">comments</span><span class="p">:</span>
+        <span class="n">m</span> <span class="o">=</span> <span class="n">_REPLACE_RE</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">))</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">m</span><span class="p">:</span>
+            <span class="n">skipped</span> <span class="o">+=</span> <span class="mi">1</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;id&quot;</span><span class="p">),</span> <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;skipped&quot;</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="s2">&quot;no-grammar-match&quot;</span><span class="p">})</span>
+            <span class="k">continue</span>
+        <span class="n">replacement</span> <span class="o">=</span> <span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+        <span class="n">anchor</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;anchor_text&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">anchor</span><span class="p">:</span>
+            <span class="n">skipped</span> <span class="o">+=</span> <span class="mi">1</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;id&quot;</span><span class="p">),</span> <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;skipped&quot;</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="s2">&quot;no-anchor&quot;</span><span class="p">})</span>
+            <span class="k">continue</span>
+        <span class="n">start</span><span class="p">,</span> <span class="n">end</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;paragraph_range&quot;</span><span class="p">,</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">])</span>
+        <span class="k">if</span> <span class="n">start</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">end</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">skipped</span> <span class="o">+=</span> <span class="mi">1</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;id&quot;</span><span class="p">),</span> <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;skipped&quot;</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="s2">&quot;no-range&quot;</span><span class="p">})</span>
+            <span class="k">continue</span>
+        <span class="n">did_apply</span> <span class="o">=</span> <span class="kc">False</span>
+        <span class="k">for</span> <span class="n">pi</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">start</span><span class="p">),</span> <span class="nb">min</span><span class="p">(</span><span class="n">end</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">paragraphs</span><span class="p">))):</span>
+            <span class="k">if</span> <span class="n">_replace_in_paragraph</span><span class="p">(</span><span class="n">paragraphs</span><span class="p">[</span><span class="n">pi</span><span class="p">],</span> <span class="n">anchor</span><span class="p">,</span> <span class="n">replacement</span><span class="p">):</span>
+                <span class="n">did_apply</span> <span class="o">=</span> <span class="kc">True</span>
+                <span class="k">break</span>
+        <span class="k">if</span> <span class="n">did_apply</span><span class="p">:</span>
+            <span class="n">applied</span> <span class="o">+=</span> <span class="mi">1</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;id&quot;</span><span class="p">),</span> <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;applied&quot;</span><span class="p">})</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">skipped</span> <span class="o">+=</span> <span class="mi">1</span>
+            <span class="n">details</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;id&quot;</span><span class="p">),</span> <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;skipped&quot;</span><span class="p">,</span> <span class="s2">&quot;reason&quot;</span><span class="p">:</span> <span class="s2">&quot;anchor-not-found&quot;</span><span class="p">}</span>
+            <span class="p">)</span>
+
+    <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;applied&quot;</span><span class="p">:</span> <span class="n">applied</span><span class="p">,</span> <span class="s2">&quot;skipped&quot;</span><span class="p">:</span> <span class="n">skipped</span><span class="p">,</span> <span class="s2">&quot;details&quot;</span><span class="p">:</span> <span class="n">details</span><span class="p">}</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;extract_comments&quot;</span><span class="p">,</span> <span class="s2">&quot;apply_comments_as_edits&quot;</span><span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
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+  </div>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_msword/diff.html b/src/scitex/_sphinx_html/_modules/scitex_msword/diff.html
new file mode 100644
index 000000000..481e26680
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_msword/diff.html
@@ -0,0 +1,955 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_msword.diff &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
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+</head>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
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+      <li class="breadcrumb-item active">scitex_msword.diff</li>
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+             
+  <h1>Source code for scitex_msword.diff</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2026-06-02 00:00:00</span>
+<span class="c1"># File: src/scitex_msword/diff.py</span>
+<span class="c1">#</span>
+<span class="c1"># Part of scitex-msword (AGPL-3.0-only). See LICENSE at the repo root.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Paragraph-level diff between two DOCX documents.</span>
+
+<span class="sd">This module implements ``diff_docx`` which compares two .docx files (or two</span>
+<span class="sd">already-loaded ``python-docx`` ``Document`` objects) and returns a list of</span>
+<span class="sd">paragraph-level operations describing the changes.</span>
+
+<span class="sd">The diff is computed with ``difflib.SequenceMatcher`` over paragraph text,</span>
+<span class="sd">and per-paragraph run-level formatting deltas (bold / italic / underline /</span>
+<span class="sd">font / highlight) are also captured for ``modify`` operations.</span>
+
+<span class="sd">Typical usage</span>
+<span class="sd">-------------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_msword.diff import diff_docx</span>
+<span class="sd">    &gt;&gt;&gt; ops = diff_docx(&quot;v15.docx&quot;, &quot;v16.docx&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; for op in ops:</span>
+<span class="sd">    ...     print(op[&quot;op&quot;], op[&quot;index&quot;], op.get(&quot;text_b&quot;) or op.get(&quot;text_a&quot;))</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">difflib</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">docx</span>  <span class="c1"># type: ignore[import-untyped]</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.document</span><span class="w"> </span><span class="kn">import</span> <span class="n">Document</span> <span class="k">as</span> <span class="n">DocxDocument</span>  <span class="c1"># type: ignore[import-untyped]</span>
+
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">True</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="ne">Exception</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="k">except</span> <span class="ne">ImportError</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>  <span class="c1"># pragma: no cover — install-time issue</span>
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">False</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span> <span class="o">=</span> <span class="n">exc</span>
+    <span class="n">DocxDocument</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment,misc]</span>
+
+
+<span class="n">DocLike</span> <span class="o">=</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">,</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">]</span>
+
+<span class="c1"># Run-level attributes we track for &quot;modify&quot; diffs.</span>
+<span class="n">_RUN_ATTRS</span> <span class="o">=</span> <span class="p">(</span><span class="s2">&quot;bold&quot;</span><span class="p">,</span> <span class="s2">&quot;italic&quot;</span><span class="p">,</span> <span class="s2">&quot;underline&quot;</span><span class="p">,</span> <span class="s2">&quot;font_name&quot;</span><span class="p">,</span> <span class="s2">&quot;font_size&quot;</span><span class="p">,</span> <span class="s2">&quot;highlight&quot;</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_ensure_docx_available</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">DOCX_AVAILABLE</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;python-docx is required for scitex_msword.diff. &quot;</span>
+            <span class="s2">&quot;Install it via `pip install python-docx`.&quot;</span>
+        <span class="p">)</span> <span class="kn">from</span><span class="w"> </span><span class="nn">_DOCX_IMPORT_ERROR</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_load</span><span class="p">(</span><span class="n">doc_like</span><span class="p">:</span> <span class="n">DocLike</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Coerce a path or an already-open Document into a Document.&quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">doc_like</span><span class="p">,</span> <span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">)):</span>
+        <span class="k">return</span> <span class="n">docx</span><span class="o">.</span><span class="n">Document</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">doc_like</span><span class="p">))</span>
+    <span class="k">return</span> <span class="n">doc_like</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_extract_run_info</span><span class="p">(</span><span class="n">run</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Extract diff-relevant attributes from a python-docx Run.&quot;&quot;&quot;</span>
+    <span class="n">info</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="n">run</span><span class="o">.</span><span class="n">text</span><span class="p">,</span>
+        <span class="s2">&quot;bold&quot;</span><span class="p">:</span> <span class="nb">bool</span><span class="p">(</span><span class="n">run</span><span class="o">.</span><span class="n">bold</span><span class="p">)</span> <span class="k">if</span> <span class="n">run</span><span class="o">.</span><span class="n">bold</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">False</span><span class="p">,</span>
+        <span class="s2">&quot;italic&quot;</span><span class="p">:</span> <span class="nb">bool</span><span class="p">(</span><span class="n">run</span><span class="o">.</span><span class="n">italic</span><span class="p">)</span> <span class="k">if</span> <span class="n">run</span><span class="o">.</span><span class="n">italic</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">False</span><span class="p">,</span>
+        <span class="s2">&quot;underline&quot;</span><span class="p">:</span> <span class="n">run</span><span class="o">.</span><span class="n">underline</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">run</span><span class="o">.</span><span class="n">underline</span><span class="p">),</span>
+    <span class="p">}</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">name</span><span class="p">:</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;font_name&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">name</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">size</span><span class="p">:</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;font_size&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">size</span><span class="o">.</span><span class="n">pt</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">hl</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">highlight_color</span>
+        <span class="k">if</span> <span class="n">hl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="c1"># WD_COLOR_INDEX enum -&gt; human-readable lowercase name.</span>
+            <span class="c1"># str(hl) is e.g. &quot;TURQUOISE (3)&quot;; .name is &quot;TURQUOISE&quot;.</span>
+            <span class="n">name</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">hl</span><span class="p">,</span> <span class="s2">&quot;name&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">hl</span><span class="p">))</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;highlight&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+    <span class="k">return</span> <span class="n">info</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_paragraph_texts_and_runs</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Tuple</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">],</span> <span class="n">List</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return per-paragraph (text, run-info-list) for the document body.&quot;&quot;&quot;</span>
+    <span class="n">texts</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">runs</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">para</span> <span class="ow">in</span> <span class="n">document</span><span class="o">.</span><span class="n">paragraphs</span><span class="p">:</span>
+        <span class="n">texts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">para</span><span class="o">.</span><span class="n">text</span><span class="p">)</span>
+        <span class="n">runs</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">_extract_run_info</span><span class="p">(</span><span class="n">r</span><span class="p">)</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">para</span><span class="o">.</span><span class="n">runs</span><span class="p">])</span>
+    <span class="k">return</span> <span class="n">texts</span><span class="p">,</span> <span class="n">runs</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_diff_runs</span><span class="p">(</span>
+    <span class="n">runs_a</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]],</span> <span class="n">runs_b</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Compare run lists by index and return a list of run-level changes.</span>
+
+<span class="sd">    Only the attributes in ``_RUN_ATTRS`` are tracked. For run-count</span>
+<span class="sd">    mismatches, the extra runs are reported as added/removed.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">changes</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">common</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">runs_a</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">runs_b</span><span class="p">))</span>
+    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">common</span><span class="p">):</span>
+        <span class="n">ra</span><span class="p">,</span> <span class="n">rb</span> <span class="o">=</span> <span class="n">runs_a</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">runs_b</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+        <span class="n">delta</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="k">for</span> <span class="n">attr</span> <span class="ow">in</span> <span class="n">_RUN_ATTRS</span><span class="p">:</span>
+            <span class="n">va</span><span class="p">,</span> <span class="n">vb</span> <span class="o">=</span> <span class="n">ra</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">attr</span><span class="p">),</span> <span class="n">rb</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">attr</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">va</span> <span class="o">!=</span> <span class="n">vb</span><span class="p">:</span>
+                <span class="n">delta</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;a&quot;</span><span class="p">:</span> <span class="n">va</span><span class="p">,</span> <span class="s2">&quot;b&quot;</span><span class="p">:</span> <span class="n">vb</span><span class="p">}</span>
+        <span class="k">if</span> <span class="n">ra</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">)</span> <span class="o">!=</span> <span class="n">rb</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">):</span>
+            <span class="n">delta</span><span class="p">[</span><span class="s2">&quot;text&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;a&quot;</span><span class="p">:</span> <span class="n">ra</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">),</span> <span class="s2">&quot;b&quot;</span><span class="p">:</span> <span class="n">rb</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">)}</span>
+        <span class="k">if</span> <span class="n">delta</span><span class="p">:</span>
+            <span class="n">changes</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;run_index&quot;</span><span class="p">:</span> <span class="n">i</span><span class="p">,</span> <span class="s2">&quot;delta&quot;</span><span class="p">:</span> <span class="n">delta</span><span class="p">})</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">runs_a</span><span class="p">)</span> <span class="o">&gt;</span> <span class="n">common</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">common</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">runs_a</span><span class="p">)):</span>
+            <span class="n">changes</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;run_index&quot;</span><span class="p">:</span> <span class="n">i</span><span class="p">,</span> <span class="s2">&quot;removed&quot;</span><span class="p">:</span> <span class="n">runs_a</span><span class="p">[</span><span class="n">i</span><span class="p">]})</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">runs_b</span><span class="p">)</span> <span class="o">&gt;</span> <span class="n">common</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">common</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">runs_b</span><span class="p">)):</span>
+            <span class="n">changes</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s2">&quot;run_index&quot;</span><span class="p">:</span> <span class="n">i</span><span class="p">,</span> <span class="s2">&quot;added&quot;</span><span class="p">:</span> <span class="n">runs_b</span><span class="p">[</span><span class="n">i</span><span class="p">]})</span>
+    <span class="k">return</span> <span class="n">changes</span>
+
+
+<div class="viewcode-block" id="diff_docx">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.diff_docx">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">diff_docx</span><span class="p">(</span>
+    <span class="n">a</span><span class="p">:</span> <span class="n">DocLike</span><span class="p">,</span>
+    <span class="n">b</span><span class="p">:</span> <span class="n">DocLike</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">include_run_diff</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Compute paragraph-level diff between two DOCX documents.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    a, b : str | Path | docx.Document</span>
+<span class="sd">        Inputs to compare. May be paths or already-loaded Documents.</span>
+<span class="sd">    include_run_diff : bool, default True</span>
+<span class="sd">        If True, ``modify`` operations include a ``runs_changed`` field</span>
+<span class="sd">        listing the run-level formatting deltas.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list[dict]</span>
+<span class="sd">        Each entry is one of::</span>
+
+<span class="sd">            {&quot;op&quot;: &quot;equal&quot;,  &quot;index&quot;: int, &quot;text_a&quot;: str, &quot;text_b&quot;: str}</span>
+<span class="sd">            {&quot;op&quot;: &quot;insert&quot;, &quot;index&quot;: int, &quot;text_a&quot;: None, &quot;text_b&quot;: str}</span>
+<span class="sd">            {&quot;op&quot;: &quot;delete&quot;, &quot;index&quot;: int, &quot;text_a&quot;: str,  &quot;text_b&quot;: None}</span>
+<span class="sd">            {&quot;op&quot;: &quot;modify&quot;, &quot;index&quot;: int, &quot;text_a&quot;: str,  &quot;text_b&quot;: str,</span>
+<span class="sd">             &quot;runs_changed&quot;: [...]}</span>
+
+<span class="sd">        ``index`` refers to the paragraph index in document ``b`` for</span>
+<span class="sd">        ``equal``/``insert``/``modify`` operations, and to the paragraph</span>
+<span class="sd">        index in document ``a`` for ``delete`` operations.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_msword.diff import diff_docx</span>
+<span class="sd">    &gt;&gt;&gt; ops = diff_docx(&quot;v15.docx&quot;, &quot;v16.docx&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; changes = [o for o in ops if o[&quot;op&quot;] != &quot;equal&quot;]</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">doc_a</span> <span class="o">=</span> <span class="n">_load</span><span class="p">(</span><span class="n">a</span><span class="p">)</span>
+    <span class="n">doc_b</span> <span class="o">=</span> <span class="n">_load</span><span class="p">(</span><span class="n">b</span><span class="p">)</span>
+
+    <span class="n">texts_a</span><span class="p">,</span> <span class="n">runs_a</span> <span class="o">=</span> <span class="n">_paragraph_texts_and_runs</span><span class="p">(</span><span class="n">doc_a</span><span class="p">)</span>
+    <span class="n">texts_b</span><span class="p">,</span> <span class="n">runs_b</span> <span class="o">=</span> <span class="n">_paragraph_texts_and_runs</span><span class="p">(</span><span class="n">doc_b</span><span class="p">)</span>
+
+    <span class="n">matcher</span> <span class="o">=</span> <span class="n">difflib</span><span class="o">.</span><span class="n">SequenceMatcher</span><span class="p">(</span><span class="n">a</span><span class="o">=</span><span class="n">texts_a</span><span class="p">,</span> <span class="n">b</span><span class="o">=</span><span class="n">texts_b</span><span class="p">,</span> <span class="n">autojunk</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+    <span class="n">ops</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">for</span> <span class="n">tag</span><span class="p">,</span> <span class="n">i1</span><span class="p">,</span> <span class="n">i2</span><span class="p">,</span> <span class="n">j1</span><span class="p">,</span> <span class="n">j2</span> <span class="ow">in</span> <span class="n">matcher</span><span class="o">.</span><span class="n">get_opcodes</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;equal&quot;</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i2</span> <span class="o">-</span> <span class="n">i1</span><span class="p">):</span>
+                <span class="n">ops</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="p">{</span>
+                        <span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;equal&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">j1</span> <span class="o">+</span> <span class="n">k</span><span class="p">,</span>
+                        <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="n">texts_a</span><span class="p">[</span><span class="n">i1</span> <span class="o">+</span> <span class="n">k</span><span class="p">],</span>
+                        <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="n">texts_b</span><span class="p">[</span><span class="n">j1</span> <span class="o">+</span> <span class="n">k</span><span class="p">],</span>
+                    <span class="p">}</span>
+                <span class="p">)</span>
+        <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;delete&quot;</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i2</span> <span class="o">-</span> <span class="n">i1</span><span class="p">):</span>
+                <span class="n">ops</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="p">{</span>
+                        <span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;delete&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">i1</span> <span class="o">+</span> <span class="n">k</span><span class="p">,</span>
+                        <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="n">texts_a</span><span class="p">[</span><span class="n">i1</span> <span class="o">+</span> <span class="n">k</span><span class="p">],</span>
+                        <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span>
+                    <span class="p">}</span>
+                <span class="p">)</span>
+        <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;insert&quot;</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">j2</span> <span class="o">-</span> <span class="n">j1</span><span class="p">):</span>
+                <span class="n">ops</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="p">{</span>
+                        <span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;insert&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">j1</span> <span class="o">+</span> <span class="n">k</span><span class="p">,</span>
+                        <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span>
+                        <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="n">texts_b</span><span class="p">[</span><span class="n">j1</span> <span class="o">+</span> <span class="n">k</span><span class="p">],</span>
+                    <span class="p">}</span>
+                <span class="p">)</span>
+        <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;replace&quot;</span><span class="p">:</span>
+            <span class="c1"># Pair up the replaced ranges; surplus on either side becomes</span>
+            <span class="c1"># delete / insert.</span>
+            <span class="n">paired</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">i2</span> <span class="o">-</span> <span class="n">i1</span><span class="p">,</span> <span class="n">j2</span> <span class="o">-</span> <span class="n">j1</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">paired</span><span class="p">):</span>
+                <span class="n">ai</span><span class="p">,</span> <span class="n">bi</span> <span class="o">=</span> <span class="n">i1</span> <span class="o">+</span> <span class="n">k</span><span class="p">,</span> <span class="n">j1</span> <span class="o">+</span> <span class="n">k</span>
+                <span class="n">entry</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;modify&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">bi</span><span class="p">,</span>
+                    <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="n">texts_a</span><span class="p">[</span><span class="n">ai</span><span class="p">],</span>
+                    <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="n">texts_b</span><span class="p">[</span><span class="n">bi</span><span class="p">],</span>
+                <span class="p">}</span>
+                <span class="k">if</span> <span class="n">include_run_diff</span><span class="p">:</span>
+                    <span class="n">entry</span><span class="p">[</span><span class="s2">&quot;runs_changed&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_diff_runs</span><span class="p">(</span><span class="n">runs_a</span><span class="p">[</span><span class="n">ai</span><span class="p">],</span> <span class="n">runs_b</span><span class="p">[</span><span class="n">bi</span><span class="p">])</span>
+                <span class="n">ops</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">paired</span><span class="p">,</span> <span class="n">i2</span> <span class="o">-</span> <span class="n">i1</span><span class="p">):</span>
+                <span class="n">ai</span> <span class="o">=</span> <span class="n">i1</span> <span class="o">+</span> <span class="n">k</span>
+                <span class="n">ops</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="p">{</span>
+                        <span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;delete&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">ai</span><span class="p">,</span>
+                        <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="n">texts_a</span><span class="p">[</span><span class="n">ai</span><span class="p">],</span>
+                        <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span>
+                    <span class="p">}</span>
+                <span class="p">)</span>
+            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">paired</span><span class="p">,</span> <span class="n">j2</span> <span class="o">-</span> <span class="n">j1</span><span class="p">):</span>
+                <span class="n">bi</span> <span class="o">=</span> <span class="n">j1</span> <span class="o">+</span> <span class="n">k</span>
+                <span class="n">ops</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                    <span class="p">{</span>
+                        <span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;insert&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">bi</span><span class="p">,</span>
+                        <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span>
+                        <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="n">texts_b</span><span class="p">[</span><span class="n">bi</span><span class="p">],</span>
+                    <span class="p">}</span>
+                <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">ops</span></div>
+
+
+
+<div class="viewcode-block" id="summarize_diff">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.summarize_diff">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">summarize_diff</span><span class="p">(</span><span class="n">ops</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]])</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">int</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Convenience helper: count operations by type.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    ops : list[dict]</span>
+<span class="sd">        Output of :func:`diff_docx`.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict[str, int]</span>
+<span class="sd">        Mapping ``{&quot;equal&quot;: n, &quot;insert&quot;: n, &quot;delete&quot;: n, &quot;modify&quot;: n}``.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">summary</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;equal&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;insert&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;delete&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;modify&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">}</span>
+    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">ops</span><span class="p">:</span>
+        <span class="n">summary</span><span class="p">[</span><span class="n">op</span><span class="p">[</span><span class="s2">&quot;op&quot;</span><span class="p">]]</span> <span class="o">=</span> <span class="n">summary</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">op</span><span class="p">[</span><span class="s2">&quot;op&quot;</span><span class="p">],</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span>
+    <span class="k">return</span> <span class="n">summary</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;diff_docx&quot;</span><span class="p">,</span> <span class="s2">&quot;summarize_diff&quot;</span><span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_msword.html">scitex_msword</a></li>
+      <li class="breadcrumb-item active">scitex_msword.highlights</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_msword.highlights</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2026-06-02 00:00:00</span>
+<span class="c1"># File: src/scitex_msword/highlights.py</span>
+<span class="c1">#</span>
+<span class="c1"># Part of scitex-msword (AGPL-3.0-only). See LICENSE at the repo root.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Visual-mark / highlight utilities for python-docx Documents.</span>
+
+<span class="sd">This module is used by the BOOST v16 dogfooding workflow to visualize:</span>
+
+<span class="sd">- *additions* by the operator (turquoise highlight, by convention)</span>
+<span class="sd">- *modifications* to operator-supplied content (magenta highlight)</span>
+
+<span class="sd">plus a generic :func:`extract_highlights` to inspect what colors are</span>
+<span class="sd">present in a document and which runs carry them.</span>
+
+<span class="sd">Color names mirror Word&#39;s ``WD_COLOR_INDEX`` enum (case-insensitive):</span>
+<span class="sd">``turquoise``, ``pink``, ``yellow``, ``green``, ``blue``, ``red``,</span>
+<span class="sd">``gray_25``, ``gray_50``, ``black``, ``white``, ``dark_red``,</span>
+<span class="sd">``dark_yellow``, ``dark_blue``, ``teal``, ``violet``, and ``auto``.</span>
+
+<span class="sd">For convenience the following BOOST-v16 aliases are also accepted:</span>
+
+<span class="sd">- ``magenta`` -&gt; ``pink`` (Word&#39;s bright-pink highlight)</span>
+<span class="sd">- ``purple``  -&gt; ``violet``</span>
+<span class="sd">- ``cyan``    -&gt; ``turquoise``</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">collections</span><span class="w"> </span><span class="kn">import</span> <span class="n">defaultdict</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">Iterable</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Tuple</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.document</span><span class="w"> </span><span class="kn">import</span> <span class="n">Document</span> <span class="k">as</span> <span class="n">DocxDocument</span>  <span class="c1"># type: ignore[import-untyped]</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.enum.text</span><span class="w"> </span><span class="kn">import</span> <span class="n">WD_COLOR_INDEX</span>  <span class="c1"># type: ignore[import-untyped]</span>
+
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">True</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="ne">Exception</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="k">except</span> <span class="ne">ImportError</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">False</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span> <span class="o">=</span> <span class="n">exc</span>
+    <span class="n">WD_COLOR_INDEX</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment]</span>
+    <span class="n">DocxDocument</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment,misc]</span>
+
+
+<span class="c1"># Canonical addition / modification colors (mirrors BOOST v16 convention).</span>
+<span class="n">ADDITION_COLOR</span> <span class="o">=</span> <span class="s2">&quot;turquoise&quot;</span>
+<span class="n">MODIFICATION_COLOR</span> <span class="o">=</span> <span class="s2">&quot;magenta&quot;</span>
+
+<span class="c1"># Map lowercase / underscore-tolerant color name -&gt; WD_COLOR_INDEX value.</span>
+<span class="c1"># Lazily populated on first use so the module is import-safe without docx.</span>
+<span class="n">_COLOR_NAME_MAP</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_ensure_docx_available</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">DOCX_AVAILABLE</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;python-docx is required for scitex_msword.highlights. &quot;</span>
+            <span class="s2">&quot;Install it via `pip install python-docx`.&quot;</span>
+        <span class="p">)</span> <span class="kn">from</span><span class="w"> </span><span class="nn">_DOCX_IMPORT_ERROR</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_color_map</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Lazy-build the lowercase -&gt; WD_COLOR_INDEX mapping.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">_COLOR_NAME_MAP</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_COLOR_NAME_MAP</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">member</span> <span class="ow">in</span> <span class="n">WD_COLOR_INDEX</span><span class="p">:</span>  <span class="c1"># type: ignore[union-attr]</span>
+        <span class="n">name</span> <span class="o">=</span> <span class="n">member</span><span class="o">.</span><span class="n">name</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+        <span class="n">_COLOR_NAME_MAP</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">member</span>
+        <span class="c1"># Allow callers to use either &quot;gray25&quot; or &quot;gray_25&quot; forms.</span>
+        <span class="k">if</span> <span class="s2">&quot;_&quot;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
+            <span class="n">_COLOR_NAME_MAP</span><span class="p">[</span><span class="n">name</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;_&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)]</span> <span class="o">=</span> <span class="n">member</span>
+    <span class="c1"># Friendly aliases used by the BOOST v16 workflow.</span>
+    <span class="n">_COLOR_NAME_MAP</span><span class="p">[</span><span class="s2">&quot;magenta&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">WD_COLOR_INDEX</span><span class="o">.</span><span class="n">PINK</span>  <span class="c1"># type: ignore[union-attr]</span>
+    <span class="n">_COLOR_NAME_MAP</span><span class="p">[</span><span class="s2">&quot;purple&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">WD_COLOR_INDEX</span><span class="o">.</span><span class="n">VIOLET</span>  <span class="c1"># type: ignore[union-attr]</span>
+    <span class="n">_COLOR_NAME_MAP</span><span class="p">[</span><span class="s2">&quot;cyan&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">WD_COLOR_INDEX</span><span class="o">.</span><span class="n">TURQUOISE</span>  <span class="c1"># type: ignore[union-attr]</span>
+    <span class="k">return</span> <span class="n">_COLOR_NAME_MAP</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_resolve_color</span><span class="p">(</span><span class="n">color</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Translate a string color name (or pass-through enum) into WD_COLOR_INDEX.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">color</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">_ensure_docx_available</span><span class="p">()</span>
+        <span class="k">return</span> <span class="n">WD_COLOR_INDEX</span><span class="o">.</span><span class="n">AUTO</span>  <span class="c1"># type: ignore[union-attr]</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">color</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">color</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span>
+        <span class="n">cmap</span> <span class="o">=</span> <span class="n">_color_map</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">cmap</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Unknown highlight color: </span><span class="si">{</span><span class="n">color</span><span class="si">!r}</span><span class="s2">. &quot;</span>
+                <span class="sa">f</span><span class="s2">&quot;Known: </span><span class="si">{</span><span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">cmap</span><span class="p">))[:</span><span class="mi">12</span><span class="p">]</span><span class="si">}</span><span class="s2">...&quot;</span>
+            <span class="p">)</span>
+        <span class="k">return</span> <span class="n">cmap</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+    <span class="k">return</span> <span class="n">color</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_iter_target_runs</span><span class="p">(</span><span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span> <span class="n">targets</span><span class="p">:</span> <span class="n">Iterable</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]]):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Yield (run_obj, (paragraph_idx, run_idx)) pairs for valid targets.&quot;&quot;&quot;</span>
+    <span class="n">paragraphs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">document</span><span class="o">.</span><span class="n">paragraphs</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">pi</span><span class="p">,</span> <span class="n">ri</span> <span class="ow">in</span> <span class="n">targets</span><span class="p">:</span>
+        <span class="k">if</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">pi</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">paragraphs</span><span class="p">):</span>
+            <span class="n">runs</span> <span class="o">=</span> <span class="n">paragraphs</span><span class="p">[</span><span class="n">pi</span><span class="p">]</span><span class="o">.</span><span class="n">runs</span>
+            <span class="k">if</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">ri</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">runs</span><span class="p">):</span>
+                <span class="k">yield</span> <span class="n">runs</span><span class="p">[</span><span class="n">ri</span><span class="p">],</span> <span class="p">(</span><span class="n">pi</span><span class="p">,</span> <span class="n">ri</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_apply_highlight</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+    <span class="n">runs</span><span class="p">:</span> <span class="n">Iterable</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]],</span>
+    <span class="n">color</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Apply ``color`` highlight to every (paragraph_idx, run_idx) target.&quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">wd_color</span> <span class="o">=</span> <span class="n">_resolve_color</span><span class="p">(</span><span class="n">color</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">run</span><span class="p">,</span> <span class="n">_</span> <span class="ow">in</span> <span class="n">_iter_target_runs</span><span class="p">(</span><span class="n">document</span><span class="p">,</span> <span class="n">runs</span><span class="p">):</span>
+        <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">highlight_color</span> <span class="o">=</span> <span class="n">wd_color</span>
+    <span class="k">return</span> <span class="n">document</span>
+
+
+<div class="viewcode-block" id="mark_additions">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.mark_additions">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">mark_additions</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+    <span class="n">runs</span><span class="p">:</span> <span class="n">Iterable</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]],</span>
+    <span class="n">color</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="n">ADDITION_COLOR</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Highlight the runs that the operator (or agent) *added* to the document.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        The Document to mutate in place.</span>
+<span class="sd">    runs : iterable of (paragraph_idx, run_idx)</span>
+<span class="sd">        Targets to highlight. Out-of-range indices are skipped silently.</span>
+<span class="sd">    color : str, default &quot;turquoise&quot;</span>
+<span class="sd">        Color name. See module docstring for the supported palette.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    docx.Document</span>
+<span class="sd">        The same Document object, mutated.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_msword.highlights import mark_additions</span>
+<span class="sd">    &gt;&gt;&gt; doc = mark_additions(doc, [(3, 0), (5, 2)])  # default turquoise</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_apply_highlight</span><span class="p">(</span><span class="n">document</span><span class="p">,</span> <span class="n">runs</span><span class="p">,</span> <span class="n">color</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="mark_modifications">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.mark_modifications">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">mark_modifications</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+    <span class="n">runs</span><span class="p">:</span> <span class="n">Iterable</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">int</span><span class="p">]],</span>
+    <span class="n">color</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="n">MODIFICATION_COLOR</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Highlight the runs that the operator (or agent) *modified* in the document.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        The Document to mutate in place.</span>
+<span class="sd">    runs : iterable of (paragraph_idx, run_idx)</span>
+<span class="sd">        Targets to highlight. Out-of-range indices are skipped silently.</span>
+<span class="sd">    color : str, default &quot;magenta&quot;</span>
+<span class="sd">        Color name. See module docstring for the supported palette.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    docx.Document</span>
+<span class="sd">        The same Document object, mutated.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_msword.highlights import mark_modifications</span>
+<span class="sd">    &gt;&gt;&gt; doc = mark_modifications(doc, [(7, 1)])  # default magenta</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_apply_highlight</span><span class="p">(</span><span class="n">document</span><span class="p">,</span> <span class="n">runs</span><span class="p">,</span> <span class="n">color</span><span class="p">)</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_run_highlight_name</span><span class="p">(</span><span class="n">run</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the lowercase highlight color name for the run, or None.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">hl</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">highlight_color</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="k">if</span> <span class="n">hl</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="c1"># WD_COLOR_INDEX members expose .name; str() includes the int code,</span>
+    <span class="c1"># which is unhelpful for bucketing.</span>
+    <span class="n">name</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">hl</span><span class="p">,</span> <span class="s2">&quot;name&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">hl</span><span class="p">))</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+    <span class="c1"># Strip any trailing &quot; (N)&quot; leftover defensively.</span>
+    <span class="n">name</span> <span class="o">=</span> <span class="n">name</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;auto&quot;</span><span class="p">,</span> <span class="s2">&quot;inherited&quot;</span><span class="p">):</span>
+        <span class="k">return</span> <span class="kc">None</span>
+    <span class="k">return</span> <span class="n">name</span>
+
+
+<div class="viewcode-block" id="extract_highlights">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.extract_highlights">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">extract_highlights</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+    <span class="n">by_color</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Extract highlighted runs from a document, grouped by color.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        The document to scan.</span>
+<span class="sd">    by_color : bool, default True</span>
+<span class="sd">        If True (default), return ``{color_name: [run_info, ...]}``.</span>
+<span class="sd">        If False, return a single ``{&quot;all&quot;: [run_info, ...]}`` bucket</span>
+<span class="sd">        with each entry&#39;s ``color`` field populated.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict[str, list[dict]]</span>
+<span class="sd">        Mapping from color name to a list of run info dicts of shape::</span>
+
+<span class="sd">            {&quot;paragraph&quot;: int, &quot;run&quot;: int, &quot;text&quot;: str, &quot;color&quot;: str}</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_msword.highlights import extract_highlights</span>
+<span class="sd">    &gt;&gt;&gt; by_color = extract_highlights(doc)</span>
+<span class="sd">    &gt;&gt;&gt; by_color.get(&quot;turquoise&quot;, [])</span>
+<span class="sd">    [{&#39;paragraph&#39;: 3, &#39;run&#39;: 0, &#39;text&#39;: &#39;...&#39;, &#39;color&#39;: &#39;turquoise&#39;}]</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">buckets</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]]</span> <span class="o">=</span> <span class="n">defaultdict</span><span class="p">(</span><span class="nb">list</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">pi</span><span class="p">,</span> <span class="n">para</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">document</span><span class="o">.</span><span class="n">paragraphs</span><span class="p">):</span>
+        <span class="k">for</span> <span class="n">ri</span><span class="p">,</span> <span class="n">run</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">para</span><span class="o">.</span><span class="n">runs</span><span class="p">):</span>
+            <span class="n">name</span> <span class="o">=</span> <span class="n">_run_highlight_name</span><span class="p">(</span><span class="n">run</span><span class="p">)</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">name</span><span class="p">:</span>
+                <span class="k">continue</span>
+            <span class="n">entry</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="s2">&quot;paragraph&quot;</span><span class="p">:</span> <span class="n">pi</span><span class="p">,</span>
+                <span class="s2">&quot;run&quot;</span><span class="p">:</span> <span class="n">ri</span><span class="p">,</span>
+                <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="n">run</span><span class="o">.</span><span class="n">text</span><span class="p">,</span>
+                <span class="s2">&quot;color&quot;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span>
+            <span class="p">}</span>
+            <span class="n">bucket</span> <span class="o">=</span> <span class="n">name</span> <span class="k">if</span> <span class="n">by_color</span> <span class="k">else</span> <span class="s2">&quot;all&quot;</span>
+            <span class="n">buckets</span><span class="p">[</span><span class="n">bucket</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="p">)</span>
+    <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="n">buckets</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="clear_highlights">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.clear_highlights">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">clear_highlights</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+    <span class="n">colors</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Iterable</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Remove highlights from all runs (optionally only for the listed colors).</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        Document to mutate in place.</span>
+<span class="sd">    colors : iterable of str, optional</span>
+<span class="sd">        If provided, only runs with one of these highlight colors are</span>
+<span class="sd">        cleared. If ``None`` (default), every highlighted run is cleared.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    docx.Document</span>
+<span class="sd">        The same Document object, mutated.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">target</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="k">if</span> <span class="n">colors</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">target</span> <span class="o">=</span> <span class="p">{</span><span class="n">c</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">colors</span><span class="p">}</span>
+    <span class="k">for</span> <span class="n">para</span> <span class="ow">in</span> <span class="n">document</span><span class="o">.</span><span class="n">paragraphs</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">para</span><span class="o">.</span><span class="n">runs</span><span class="p">:</span>
+            <span class="n">name</span> <span class="o">=</span> <span class="n">_run_highlight_name</span><span class="p">(</span><span class="n">run</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">name</span> <span class="ow">and</span> <span class="p">(</span><span class="n">target</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">target</span><span class="p">):</span>
+                <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">highlight_color</span> <span class="o">=</span> <span class="n">WD_COLOR_INDEX</span><span class="o">.</span><span class="n">AUTO</span>  <span class="c1"># type: ignore[union-attr]</span>
+    <span class="k">return</span> <span class="n">document</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;ADDITION_COLOR&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;MODIFICATION_COLOR&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;mark_additions&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;mark_modifications&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;extract_highlights&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;clear_highlights&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_msword/profiles.html b/src/scitex/_sphinx_html/_modules/scitex_msword/profiles.html
new file mode 100644
index 000000000..c43d57cf5
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_msword/profiles.html
@@ -0,0 +1,1086 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_msword.profiles &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
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+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_msword.html">scitex_msword</a></li>
+      <li class="breadcrumb-item active">scitex_msword.profiles</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_msword.profiles</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2025-12-11 15:15:00</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/msword/profiles.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Profiles for mapping MS Word styles to SciTeX writer structures.</span>
+
+<span class="sd">Each profile corresponds to a journal / conference template, such as:</span>
+<span class="sd">- &quot;generic&quot;</span>
+<span class="sd">- &quot;mdpi-ijerph&quot;</span>
+<span class="sd">- &quot;resna-2025&quot;</span>
+<span class="sd">- &quot;iop-double-anonymous&quot;</span>
+
+<span class="sd">The profiles define:</span>
+<span class="sd">- Which Word style names correspond to section headings</span>
+<span class="sd">- How to detect captions for figures and tables</span>
+<span class="sd">- How to handle references, lists, equations, etc.</span>
+<span class="sd">- Layout settings (columns, margins, fonts)</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span><span class="p">,</span> <span class="n">field</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Callable</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span>
+
+
+<div class="viewcode-block" id="BaseWordProfile">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.BaseWordProfile">[docs]</a>
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Base configuration for mapping between DOCX and SciTeX writer documents.</span>
+
+<span class="sd">    Attributes</span>
+<span class="sd">    ----------</span>
+<span class="sd">    name : str</span>
+<span class="sd">        Profile identifier (e.g., &quot;mdpi-ijerph&quot;).</span>
+<span class="sd">    description : str</span>
+<span class="sd">        Human-readable description.</span>
+<span class="sd">    heading_styles : dict[int, str]</span>
+<span class="sd">        Mapping from section depth (1, 2, 3...) to Word style names</span>
+<span class="sd">        (e.g., {1: &quot;Heading 1&quot;, 2: &quot;Heading 2&quot;}).</span>
+<span class="sd">    caption_style : str</span>
+<span class="sd">        Word style name used for figure/table captions.</span>
+<span class="sd">    normal_style : str</span>
+<span class="sd">        Default paragraph style.</span>
+<span class="sd">    reference_section_titles : list[str]</span>
+<span class="sd">        Titles that indicate the start of the reference section.</span>
+<span class="sd">    figure_caption_prefixes : list[str]</span>
+<span class="sd">        Prefixes that identify figure captions (e.g., [&quot;Figure&quot;, &quot;Fig.&quot;]).</span>
+<span class="sd">    table_caption_prefixes : list[str]</span>
+<span class="sd">        Prefixes that identify table captions (e.g., [&quot;Table&quot;]).</span>
+<span class="sd">    list_styles : dict[str, str]</span>
+<span class="sd">        Mapping for list styles (bullet, numbered).</span>
+<span class="sd">    equation_style : str | None</span>
+<span class="sd">        Style name for equations, if any.</span>
+<span class="sd">    columns : int</span>
+<span class="sd">        Number of columns in the layout (1 or 2).</span>
+<span class="sd">    double_anonymous : bool</span>
+<span class="sd">        Whether this profile requires double-anonymous formatting.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="n">name</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">description</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">heading_styles</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">dict</span><span class="p">)</span>
+    <span class="n">caption_style</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;Caption&quot;</span>
+    <span class="n">normal_style</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;Normal&quot;</span>
+    <span class="n">reference_section_titles</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span>
+        <span class="n">default_factory</span><span class="o">=</span><span class="k">lambda</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;References&quot;</span><span class="p">,</span> <span class="s2">&quot;REFERENCES&quot;</span><span class="p">]</span>
+    <span class="p">)</span>
+    <span class="n">figure_caption_prefixes</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span>
+        <span class="n">default_factory</span><span class="o">=</span><span class="k">lambda</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;Figure&quot;</span><span class="p">,</span> <span class="s2">&quot;Fig.&quot;</span><span class="p">,</span> <span class="s2">&quot;Fig&quot;</span><span class="p">]</span>
+    <span class="p">)</span>
+    <span class="n">table_caption_prefixes</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span>
+        <span class="n">default_factory</span><span class="o">=</span><span class="k">lambda</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;Table&quot;</span><span class="p">,</span> <span class="s2">&quot;Tab.&quot;</span><span class="p">,</span> <span class="s2">&quot;Tab&quot;</span><span class="p">]</span>
+    <span class="p">)</span>
+    <span class="n">list_styles</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span>
+        <span class="n">default_factory</span><span class="o">=</span><span class="k">lambda</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;bullet&quot;</span><span class="p">:</span> <span class="s2">&quot;List Bullet&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;numbered&quot;</span><span class="p">:</span> <span class="s2">&quot;List Number&quot;</span><span class="p">,</span>
+        <span class="p">}</span>
+    <span class="p">)</span>
+    <span class="n">equation_style</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">columns</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">1</span>
+    <span class="n">double_anonymous</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span>
+
+    <span class="c1"># Optional layout / typography hints (used by profiles like boost-2026).</span>
+    <span class="c1"># These are advisory: writer code may consult them to customize fonts,</span>
+    <span class="c1"># heading shading, and line spacing without hard-coding per-profile logic.</span>
+    <span class="n">body_font</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">body_font_size_pt</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">float</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">heading_background_hex</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">line_spacing</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">float</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Post-processing hooks</span>
+    <span class="n">post_import_hooks</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Callable</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+    <span class="n">pre_export_hooks</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Callable</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span></div>
+
+
+
+<span class="c1"># --- Concrete profiles ------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_generic_profile</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Generic Word template profile.</span>
+
+<span class="sd">    This profile is intentionally conservative and assumes that:</span>
+<span class="sd">    - &quot;Heading 1/2/3&quot; are used for section headings.</span>
+<span class="sd">    - &quot;Caption&quot; is used for figure/table captions.</span>
+<span class="sd">    - &quot;Normal&quot; is the default body text.</span>
+
+<span class="sd">    This should work reasonably well for many simple manuscripts.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+        <span class="n">name</span><span class="o">=</span><span class="s2">&quot;generic&quot;</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="s2">&quot;Generic Word mapping with standard Heading styles.&quot;</span><span class="p">,</span>
+        <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span>
+            <span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;Heading 1&quot;</span><span class="p">,</span>
+            <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;Heading 2&quot;</span><span class="p">,</span>
+            <span class="mi">3</span><span class="p">:</span> <span class="s2">&quot;Heading 3&quot;</span><span class="p">,</span>
+            <span class="mi">4</span><span class="p">:</span> <span class="s2">&quot;Heading 4&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="n">caption_style</span><span class="o">=</span><span class="s2">&quot;Caption&quot;</span><span class="p">,</span>
+        <span class="n">normal_style</span><span class="o">=</span><span class="s2">&quot;Normal&quot;</span><span class="p">,</span>
+        <span class="n">reference_section_titles</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;References&quot;</span><span class="p">,</span> <span class="s2">&quot;REFERENCES&quot;</span><span class="p">,</span> <span class="s2">&quot;Bibliography&quot;</span><span class="p">],</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_mdpi_ijerph_profile</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    MDPI IJERPH template profile.</span>
+
+<span class="sd">    Based on the MDPI Word template structure:</span>
+<span class="sd">    - Section headings use built-in heading styles.</span>
+<span class="sd">    - References section is titled &quot;References&quot;.</span>
+<span class="sd">    - Single column layout.</span>
+<span class="sd">    - Specific section order: Introduction, Materials and Methods,</span>
+<span class="sd">      Results, Discussion, Conclusions.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+        <span class="n">name</span><span class="o">=</span><span class="s2">&quot;mdpi-ijerph&quot;</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="s2">&quot;MDPI IJERPH (Int. J. Environ. Res. Public Health) Word template.&quot;</span><span class="p">,</span>
+        <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span>
+            <span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;Heading 1&quot;</span><span class="p">,</span>
+            <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;Heading 2&quot;</span><span class="p">,</span>
+            <span class="mi">3</span><span class="p">:</span> <span class="s2">&quot;Heading 3&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="n">caption_style</span><span class="o">=</span><span class="s2">&quot;Caption&quot;</span><span class="p">,</span>
+        <span class="n">normal_style</span><span class="o">=</span><span class="s2">&quot;Normal&quot;</span><span class="p">,</span>
+        <span class="n">reference_section_titles</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;References&quot;</span><span class="p">],</span>
+        <span class="n">columns</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_resna_2025_profile</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    RESNA 2025 scientific paper template profile.</span>
+
+<span class="sd">    The RESNA template:</span>
+<span class="sd">    - Uses all-caps section headings (INTRODUCTION, METHODS, etc.)</span>
+<span class="sd">    - Strict 4-page layout</span>
+<span class="sd">    - Two-column format</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+        <span class="n">name</span><span class="o">=</span><span class="s2">&quot;resna-2025&quot;</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="s2">&quot;RESNA 2025 Scientific Paper Word template.&quot;</span><span class="p">,</span>
+        <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span>
+            <span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;Heading 1&quot;</span><span class="p">,</span>  <span class="c1"># INTRODUCTION, METHODS, etc.</span>
+            <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;Heading 2&quot;</span><span class="p">,</span>  <span class="c1"># First-level sub-heading</span>
+        <span class="p">},</span>
+        <span class="n">caption_style</span><span class="o">=</span><span class="s2">&quot;Caption&quot;</span><span class="p">,</span>
+        <span class="n">normal_style</span><span class="o">=</span><span class="s2">&quot;Normal&quot;</span><span class="p">,</span>
+        <span class="n">reference_section_titles</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;References&quot;</span><span class="p">,</span> <span class="s2">&quot;REFERENCES&quot;</span><span class="p">],</span>
+        <span class="n">columns</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_iop_double_anonymous_profile</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    IOP double-anonymous Word template profile.</span>
+
+<span class="sd">    The IOP template uses custom styles:</span>
+<span class="sd">    - IOPH1, IOPH2, IOPH3 for headings</span>
+<span class="sd">    - IOPTitle for title</span>
+<span class="sd">    - IOPAbsText for abstract</span>
+<span class="sd">    - IOPAff for affiliations</span>
+<span class="sd">    - Requires removal of author-identifying information</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+        <span class="n">name</span><span class="o">=</span><span class="s2">&quot;iop-double-anonymous&quot;</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="s2">&quot;IOP double-anonymous Word template.&quot;</span><span class="p">,</span>
+        <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span>
+            <span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;IOPH1&quot;</span><span class="p">,</span>
+            <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;IOPH2&quot;</span><span class="p">,</span>
+            <span class="mi">3</span><span class="p">:</span> <span class="s2">&quot;IOPH3&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="n">caption_style</span><span class="o">=</span><span class="s2">&quot;Caption&quot;</span><span class="p">,</span>
+        <span class="n">normal_style</span><span class="o">=</span><span class="s2">&quot;Normal&quot;</span><span class="p">,</span>
+        <span class="n">reference_section_titles</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;References&quot;</span><span class="p">],</span>
+        <span class="n">double_anonymous</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_ieee_profile</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    IEEE conference/journal template profile.</span>
+
+<span class="sd">    The IEEE template:</span>
+<span class="sd">    - Two-column format</span>
+<span class="sd">    - Roman numeral section numbering</span>
+<span class="sd">    - Specific citation style</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+        <span class="n">name</span><span class="o">=</span><span class="s2">&quot;ieee&quot;</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="s2">&quot;IEEE conference/journal Word template.&quot;</span><span class="p">,</span>
+        <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span>
+            <span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;Heading 1&quot;</span><span class="p">,</span>
+            <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;Heading 2&quot;</span><span class="p">,</span>
+            <span class="mi">3</span><span class="p">:</span> <span class="s2">&quot;Heading 3&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="n">caption_style</span><span class="o">=</span><span class="s2">&quot;Caption&quot;</span><span class="p">,</span>
+        <span class="n">normal_style</span><span class="o">=</span><span class="s2">&quot;Normal&quot;</span><span class="p">,</span>
+        <span class="n">reference_section_titles</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;References&quot;</span><span class="p">,</span> <span class="s2">&quot;REFERENCES&quot;</span><span class="p">],</span>
+        <span class="n">columns</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_springer_profile</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Springer Nature journal template profile.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+        <span class="n">name</span><span class="o">=</span><span class="s2">&quot;springer&quot;</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="s2">&quot;Springer Nature journal Word template.&quot;</span><span class="p">,</span>
+        <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span>
+            <span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;Heading 1&quot;</span><span class="p">,</span>
+            <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;Heading 2&quot;</span><span class="p">,</span>
+            <span class="mi">3</span><span class="p">:</span> <span class="s2">&quot;Heading 3&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="n">caption_style</span><span class="o">=</span><span class="s2">&quot;Caption&quot;</span><span class="p">,</span>
+        <span class="n">normal_style</span><span class="o">=</span><span class="s2">&quot;Normal&quot;</span><span class="p">,</span>
+        <span class="n">reference_section_titles</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;References&quot;</span><span class="p">],</span>
+        <span class="n">columns</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_elsevier_profile</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Elsevier journal template profile.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+        <span class="n">name</span><span class="o">=</span><span class="s2">&quot;elsevier&quot;</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="s2">&quot;Elsevier journal Word template.&quot;</span><span class="p">,</span>
+        <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span>
+            <span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;Heading 1&quot;</span><span class="p">,</span>
+            <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;Heading 2&quot;</span><span class="p">,</span>
+            <span class="mi">3</span><span class="p">:</span> <span class="s2">&quot;Heading 3&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="n">caption_style</span><span class="o">=</span><span class="s2">&quot;Caption&quot;</span><span class="p">,</span>
+        <span class="n">normal_style</span><span class="o">=</span><span class="s2">&quot;Normal&quot;</span><span class="p">,</span>
+        <span class="n">reference_section_titles</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;References&quot;</span><span class="p">],</span>
+        <span class="n">columns</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_boost_2026_profile</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    JST BOOST 2026 grant application template profile.</span>
+
+<span class="sd">    Layout convention (per BOOST v16 dogfooding):</span>
+
+<span class="sd">    - Body text: 10.5pt MS Gothic</span>
+<span class="sd">    - Headings: bold, with light-grey (#D9D9D9) background shading</span>
+<span class="sd">    - Line spacing: 1.0 (single)</span>
+<span class="sd">    - Single column</span>
+
+<span class="sd">    The advisory ``body_font`` / ``body_font_size_pt`` /</span>
+<span class="sd">    ``heading_background_hex`` / ``line_spacing`` fields let the writer</span>
+<span class="sd">    layer (or downstream tooling such as the BOOST v16 builder) pick</span>
+<span class="sd">    these up without hard-coding per-document logic.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+        <span class="n">name</span><span class="o">=</span><span class="s2">&quot;boost-2026&quot;</span><span class="p">,</span>
+        <span class="n">description</span><span class="o">=</span><span class="s2">&quot;JST BOOST 2026 grant application Word template.&quot;</span><span class="p">,</span>
+        <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span>
+            <span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;Heading 1&quot;</span><span class="p">,</span>
+            <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;Heading 2&quot;</span><span class="p">,</span>
+            <span class="mi">3</span><span class="p">:</span> <span class="s2">&quot;Heading 3&quot;</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="n">caption_style</span><span class="o">=</span><span class="s2">&quot;Caption&quot;</span><span class="p">,</span>
+        <span class="n">normal_style</span><span class="o">=</span><span class="s2">&quot;Normal&quot;</span><span class="p">,</span>
+        <span class="n">reference_section_titles</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;参考文献&quot;</span><span class="p">,</span> <span class="s2">&quot;References&quot;</span><span class="p">],</span>
+        <span class="n">columns</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+        <span class="n">body_font</span><span class="o">=</span><span class="s2">&quot;MS Gothic&quot;</span><span class="p">,</span>
+        <span class="n">body_font_size_pt</span><span class="o">=</span><span class="mf">10.5</span><span class="p">,</span>
+        <span class="n">heading_background_hex</span><span class="o">=</span><span class="s2">&quot;D9D9D9&quot;</span><span class="p">,</span>
+        <span class="n">line_spacing</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<span class="c1"># Registry of known profiles</span>
+<span class="n">_PROFILES</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">BaseWordProfile</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="s2">&quot;generic&quot;</span><span class="p">:</span> <span class="n">_generic_profile</span><span class="p">(),</span>
+    <span class="s2">&quot;mdpi-ijerph&quot;</span><span class="p">:</span> <span class="n">_mdpi_ijerph_profile</span><span class="p">(),</span>
+    <span class="s2">&quot;mdpi&quot;</span><span class="p">:</span> <span class="n">_mdpi_ijerph_profile</span><span class="p">(),</span>  <span class="c1"># Alias</span>
+    <span class="s2">&quot;resna-2025&quot;</span><span class="p">:</span> <span class="n">_resna_2025_profile</span><span class="p">(),</span>
+    <span class="s2">&quot;resna&quot;</span><span class="p">:</span> <span class="n">_resna_2025_profile</span><span class="p">(),</span>  <span class="c1"># Alias</span>
+    <span class="s2">&quot;iop-double-anonymous&quot;</span><span class="p">:</span> <span class="n">_iop_double_anonymous_profile</span><span class="p">(),</span>
+    <span class="s2">&quot;iop&quot;</span><span class="p">:</span> <span class="n">_iop_double_anonymous_profile</span><span class="p">(),</span>  <span class="c1"># Alias</span>
+    <span class="s2">&quot;ieee&quot;</span><span class="p">:</span> <span class="n">_ieee_profile</span><span class="p">(),</span>
+    <span class="s2">&quot;springer&quot;</span><span class="p">:</span> <span class="n">_springer_profile</span><span class="p">(),</span>
+    <span class="s2">&quot;elsevier&quot;</span><span class="p">:</span> <span class="n">_elsevier_profile</span><span class="p">(),</span>
+    <span class="s2">&quot;boost-2026&quot;</span><span class="p">:</span> <span class="n">_boost_2026_profile</span><span class="p">(),</span>
+    <span class="s2">&quot;boost&quot;</span><span class="p">:</span> <span class="n">_boost_2026_profile</span><span class="p">(),</span>  <span class="c1"># Alias</span>
+<span class="p">}</span>
+
+
+<div class="viewcode-block" id="list_profiles">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.list_profiles">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">list_profiles</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    List available MS Word profiles.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list[str]</span>
+<span class="sd">        List of profile names (e.g., [&quot;generic&quot;, &quot;mdpi-ijerph&quot;, ...]).</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword import list_profiles</span>
+<span class="sd">    &gt;&gt;&gt; profiles = list_profiles()</span>
+<span class="sd">    &gt;&gt;&gt; &quot;generic&quot; in profiles</span>
+<span class="sd">    True</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">_PROFILES</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span></div>
+
+
+
+<div class="viewcode-block" id="get_profile">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.get_profile">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_profile</span><span class="p">(</span><span class="n">name</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">BaseWordProfile</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get a Word profile by name.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    name : str | None</span>
+<span class="sd">        Profile name. If None, &quot;generic&quot; is used.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    BaseWordProfile</span>
+<span class="sd">        The requested profile.</span>
+
+<span class="sd">    Raises</span>
+<span class="sd">    ------</span>
+<span class="sd">    KeyError</span>
+<span class="sd">        If the profile name is unknown.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword import get_profile</span>
+<span class="sd">    &gt;&gt;&gt; profile = get_profile(&quot;mdpi-ijerph&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; profile.columns</span>
+<span class="sd">    1</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">name</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_PROFILES</span><span class="p">[</span><span class="s2">&quot;generic&quot;</span><span class="p">]</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">_PROFILES</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+    <span class="k">except</span> <span class="ne">KeyError</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+        <span class="n">available</span> <span class="o">=</span> <span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">list_profiles</span><span class="p">())</span>
+        <span class="k">raise</span> <span class="ne">KeyError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Unknown MS Word profile: </span><span class="si">{</span><span class="n">name</span><span class="si">!r}</span><span class="s2">. &quot;</span> <span class="sa">f</span><span class="s2">&quot;Available profiles: </span><span class="si">{</span><span class="n">available</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span> <span class="kn">from</span><span class="w"> </span><span class="nn">exc</span></div>
+
+
+
+<div class="viewcode-block" id="register_profile">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.register_profile">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">register_profile</span><span class="p">(</span><span class="n">profile</span><span class="p">:</span> <span class="n">BaseWordProfile</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Register a custom Word profile.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    profile : BaseWordProfile</span>
+<span class="sd">        The profile to register.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword import BaseWordProfile, register_profile</span>
+<span class="sd">    &gt;&gt;&gt; custom = BaseWordProfile(</span>
+<span class="sd">    ...     name=&quot;my-journal&quot;,</span>
+<span class="sd">    ...     description=&quot;My custom journal template&quot;,</span>
+<span class="sd">    ...     heading_styles={1: &quot;Title&quot;, 2: &quot;Subtitle&quot;},</span>
+<span class="sd">    ... )</span>
+<span class="sd">    &gt;&gt;&gt; register_profile(custom)</span>
+<span class="sd">    &gt;&gt;&gt; &quot;my-journal&quot; in list_profiles()</span>
+<span class="sd">    True</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_PROFILES</span><span class="p">[</span><span class="n">profile</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">profile</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;BaseWordProfile&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;list_profiles&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get_profile&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;register_profile&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_msword/reader.html b/src/scitex/_sphinx_html/_modules/scitex_msword/reader.html
new file mode 100644
index 000000000..d9ecc4ecd
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_msword/reader.html
@@ -0,0 +1,1461 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_msword.reader &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
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+</head>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_msword.html">scitex_msword</a></li>
+      <li class="breadcrumb-item active">scitex_msword.reader</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_msword.reader</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2025-12-11 15:15:00</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/msword/reader.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">DOCX -&gt; SciTeX writer document converter.</span>
+
+<span class="sd">This module reads MS Word .docx files and converts them into</span>
+<span class="sd">SciTeX&#39;s intermediate document format for further processing.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">hashlib</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Tuple</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.profiles</span><span class="w"> </span><span class="kn">import</span> <span class="n">BaseWordProfile</span>
+
+<span class="c1"># Lazy import for python-docx</span>
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">docx</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.document</span><span class="w"> </span><span class="kn">import</span> <span class="n">Document</span> <span class="k">as</span> <span class="n">DocxDocument</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.oxml.ns</span><span class="w"> </span><span class="kn">import</span> <span class="n">qn</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.shared</span><span class="w"> </span><span class="kn">import</span> <span class="n">Inches</span><span class="p">,</span> <span class="n">Pt</span>
+
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">True</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="k">except</span> <span class="ne">ImportError</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">False</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span> <span class="o">=</span> <span class="n">exc</span>
+    <span class="n">DocxDocument</span> <span class="o">=</span> <span class="kc">None</span>
+
+<span class="c1"># Common academic section headings for heuristic detection</span>
+<span class="n">COMMON_SECTION_HEADINGS</span> <span class="o">=</span> <span class="p">{</span>
+    <span class="s2">&quot;abstract&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;introduction&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;background&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;literature review&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;methods&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;methodology&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;materials and methods&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;experimental&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;results&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;findings&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;analysis&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;discussion&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;conclusions&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;conclusion&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;summary&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;acknowledgements&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;acknowledgments&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;acknowledgement&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;references&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;bibliography&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;works cited&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;appendix&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;appendices&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;supplementary&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;supplementary material&quot;</span><span class="p">,</span>
+<span class="p">}</span>
+
+<span class="c1"># Caption patterns for robust detection</span>
+<span class="n">CAPTION_PATTERNS</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="c1"># Figure patterns</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(figure|fig\.?)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;figure&quot;</span><span class="p">),</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(scheme)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;scheme&quot;</span><span class="p">),</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(chart)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;chart&quot;</span><span class="p">),</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(graph)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;graph&quot;</span><span class="p">),</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(plate)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;plate&quot;</span><span class="p">),</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(illustration)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;illustration&quot;</span><span class="p">),</span>
+    <span class="c1"># Table patterns</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(table|tbl\.?)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;table&quot;</span><span class="p">),</span>
+    <span class="c1"># Equation patterns</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(equation|eq\.?)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;equation&quot;</span><span class="p">),</span>
+    <span class="c1"># Listing/code patterns</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(listing|code)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;listing&quot;</span><span class="p">),</span>
+    <span class="c1"># Algorithm patterns</span>
+    <span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(algorithm|alg\.?)\s*(\d+)[\.:\s]*(.*)$&quot;</span><span class="p">,</span> <span class="s2">&quot;algorithm&quot;</span><span class="p">),</span>
+<span class="p">]</span>
+
+
+<div class="viewcode-block" id="WordReader">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.WordReader">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">WordReader</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Read a DOCX file and convert it into a SciTeX writer document.</span>
+
+<span class="sd">    This reader focuses on:</span>
+<span class="sd">    - Sections (via heading styles)</span>
+<span class="sd">    - Plain paragraphs</span>
+<span class="sd">    - Figure/table captions (via caption style)</span>
+<span class="sd">    - Embedded images extraction</span>
+<span class="sd">    - References section boundary detection</span>
+<span class="sd">    - Basic formatting (bold, italic)</span>
+
+<span class="sd">    The output is a structured intermediate representation that can be</span>
+<span class="sd">    easily fed into `scitex.writer` or exported to LaTeX/other formats.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="WordReader.__init__">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.WordReader.__init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">profile</span><span class="p">:</span> <span class="n">BaseWordProfile</span><span class="p">,</span>
+        <span class="n">extract_images</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        profile : BaseWordProfile</span>
+<span class="sd">            Mapping between Word styles and SciTeX writer semantics.</span>
+<span class="sd">        extract_images : bool</span>
+<span class="sd">            Whether to extract embedded images from the document.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">DOCX_AVAILABLE</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+                <span class="s2">&quot;python-docx is required for scitex.msword.WordReader. &quot;</span>
+                <span class="s2">&quot;Install it via `pip install python-docx`.&quot;</span>
+            <span class="p">)</span> <span class="kn">from</span><span class="w"> </span><span class="nn">_DOCX_IMPORT_ERROR</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">profile</span> <span class="o">=</span> <span class="n">profile</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">extract_images</span> <span class="o">=</span> <span class="n">extract_images</span></div>
+
+
+<div class="viewcode-block" id="WordReader.read">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.WordReader.read">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">read</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Read a DOCX file and return a SciTeX writer document.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        path : Path</span>
+<span class="sd">            Path to the DOCX file.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        dict</span>
+<span class="sd">            SciTeX writer document structure with keys:</span>
+<span class="sd">            - blocks: List of document blocks</span>
+<span class="sd">            - metadata: Profile and source information</span>
+<span class="sd">            - images: Extracted image data (if extract_images=True)</span>
+<span class="sd">            - references: Parsed reference entries</span>
+<span class="sd">            - warnings: List of conversion warnings</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">doc</span> <span class="o">=</span> <span class="n">docx</span><span class="o">.</span><span class="n">Document</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">))</span>
+
+        <span class="c1"># Initialize result structure</span>
+        <span class="n">result</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="s2">&quot;blocks&quot;</span><span class="p">:</span> <span class="p">[],</span>
+            <span class="s2">&quot;metadata&quot;</span><span class="p">:</span> <span class="p">{</span>
+                <span class="s2">&quot;profile&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">name</span><span class="p">,</span>
+                <span class="s2">&quot;source_file&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span>
+                <span class="s2">&quot;import_timestamp&quot;</span><span class="p">:</span> <span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">isoformat</span><span class="p">(),</span>
+            <span class="p">},</span>
+            <span class="s2">&quot;images&quot;</span><span class="p">:</span> <span class="p">[],</span>
+            <span class="s2">&quot;references&quot;</span><span class="p">:</span> <span class="p">[],</span>
+            <span class="s2">&quot;warnings&quot;</span><span class="p">:</span> <span class="p">[],</span>
+        <span class="p">}</span>
+
+        <span class="c1"># Extract document properties if available</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;metadata&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_extract_metadata</span><span class="p">(</span><span class="n">doc</span><span class="p">))</span>
+
+        <span class="c1"># Process paragraphs and tables</span>
+        <span class="n">blocks</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_process_body</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;blocks&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">blocks</span>
+
+        <span class="c1"># Extract images</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">extract_images</span><span class="p">:</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;images&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extract_images</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">path</span><span class="p">)</span>
+
+        <span class="c1"># Parse references section</span>
+        <span class="n">result</span><span class="p">[</span><span class="s2">&quot;references&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_parse_references</span><span class="p">(</span><span class="n">blocks</span><span class="p">)</span>
+
+        <span class="c1"># Run post-import hooks</span>
+        <span class="k">for</span> <span class="n">hook</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">post_import_hooks</span><span class="p">:</span>
+            <span class="n">result</span> <span class="o">=</span> <span class="n">hook</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="n">result</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_extract_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Extract document metadata (title, author, etc.).&quot;&quot;&quot;</span>
+        <span class="n">metadata</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">core_props</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">core_properties</span>
+            <span class="k">if</span> <span class="n">core_props</span><span class="o">.</span><span class="n">title</span><span class="p">:</span>
+                <span class="n">metadata</span><span class="p">[</span><span class="s2">&quot;title&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">core_props</span><span class="o">.</span><span class="n">title</span>
+            <span class="k">if</span> <span class="n">core_props</span><span class="o">.</span><span class="n">author</span><span class="p">:</span>
+                <span class="n">metadata</span><span class="p">[</span><span class="s2">&quot;author&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">core_props</span><span class="o">.</span><span class="n">author</span>
+            <span class="k">if</span> <span class="n">core_props</span><span class="o">.</span><span class="n">subject</span><span class="p">:</span>
+                <span class="n">metadata</span><span class="p">[</span><span class="s2">&quot;subject&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">core_props</span><span class="o">.</span><span class="n">subject</span>
+            <span class="k">if</span> <span class="n">core_props</span><span class="o">.</span><span class="n">keywords</span><span class="p">:</span>
+                <span class="n">metadata</span><span class="p">[</span><span class="s2">&quot;keywords&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">core_props</span><span class="o">.</span><span class="n">keywords</span>
+            <span class="k">if</span> <span class="n">core_props</span><span class="o">.</span><span class="n">created</span><span class="p">:</span>
+                <span class="n">metadata</span><span class="p">[</span><span class="s2">&quot;created&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">core_props</span><span class="o">.</span><span class="n">created</span><span class="o">.</span><span class="n">isoformat</span><span class="p">()</span>
+            <span class="k">if</span> <span class="n">core_props</span><span class="o">.</span><span class="n">modified</span><span class="p">:</span>
+                <span class="n">metadata</span><span class="p">[</span><span class="s2">&quot;modified&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">core_props</span><span class="o">.</span><span class="n">modified</span><span class="o">.</span><span class="n">isoformat</span><span class="p">()</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="k">pass</span>  <span class="c1"># Metadata extraction is optional</span>
+        <span class="k">return</span> <span class="n">metadata</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_process_body</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">result</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Process document body: paragraphs and tables.&quot;&quot;&quot;</span>
+        <span class="n">blocks</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="n">in_reference_section</span> <span class="o">=</span> <span class="kc">False</span>
+        <span class="n">block_index</span> <span class="o">=</span> <span class="mi">0</span>
+
+        <span class="c1"># Build rel_id -&gt; hash map for image detection</span>
+        <span class="n">rel_to_hash</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">extract_images</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">rel_id</span><span class="p">,</span> <span class="n">rel</span> <span class="ow">in</span> <span class="n">doc</span><span class="o">.</span><span class="n">part</span><span class="o">.</span><span class="n">rels</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+                <span class="k">if</span> <span class="s2">&quot;image&quot;</span> <span class="ow">in</span> <span class="n">rel</span><span class="o">.</span><span class="n">reltype</span><span class="p">:</span>
+                    <span class="n">image_bytes</span> <span class="o">=</span> <span class="n">rel</span><span class="o">.</span><span class="n">target_part</span><span class="o">.</span><span class="n">blob</span>
+                    <span class="n">image_hash</span> <span class="o">=</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">md5</span><span class="p">(</span><span class="n">image_bytes</span><span class="p">)</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">12</span><span class="p">]</span>
+                    <span class="n">rel_to_hash</span><span class="p">[</span><span class="n">rel_id</span><span class="p">]</span> <span class="o">=</span> <span class="n">image_hash</span>
+
+        <span class="c1"># Namespace for picture detection</span>
+        <span class="n">pic_ns</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;pic&quot;</span><span class="p">:</span> <span class="s2">&quot;http://schemas.openxmlformats.org/drawingml/2006/picture&quot;</span><span class="p">}</span>
+        <span class="n">a_ns</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;a&quot;</span><span class="p">:</span> <span class="s2">&quot;http://schemas.openxmlformats.org/drawingml/2006/main&quot;</span><span class="p">}</span>
+        <span class="n">r_ns</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="s2">&quot;r&quot;</span><span class="p">:</span> <span class="s2">&quot;http://schemas.openxmlformats.org/officeDocument/2006/relationships&quot;</span>
+        <span class="p">}</span>
+
+        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">doc</span><span class="o">.</span><span class="n">element</span><span class="o">.</span><span class="n">body</span><span class="p">:</span>
+            <span class="n">tag</span> <span class="o">=</span> <span class="n">element</span><span class="o">.</span><span class="n">tag</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;}&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># Remove namespace</span>
+
+            <span class="k">if</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;p&quot;</span><span class="p">:</span>
+                <span class="c1"># Process paragraph</span>
+                <span class="n">para</span> <span class="o">=</span> <span class="n">docx</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">paragraph</span><span class="o">.</span><span class="n">Paragraph</span><span class="p">(</span><span class="n">element</span><span class="p">,</span> <span class="n">doc</span><span class="p">)</span>
+
+                <span class="c1"># Detect inline images in this paragraph</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">extract_images</span><span class="p">:</span>
+                    <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">para</span><span class="o">.</span><span class="n">runs</span><span class="p">:</span>
+                        <span class="c1"># Check for drawing elements containing pictures</span>
+                        <span class="n">drawings</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">element</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="s2">&quot;.//a:blip&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">a_ns</span><span class="p">)</span>
+                        <span class="k">for</span> <span class="n">blip</span> <span class="ow">in</span> <span class="n">drawings</span><span class="p">:</span>
+                            <span class="n">embed_attr</span> <span class="o">=</span> <span class="n">qn</span><span class="p">(</span><span class="s2">&quot;r:embed&quot;</span><span class="p">)</span>
+                            <span class="n">rel_id</span> <span class="o">=</span> <span class="n">blip</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">embed_attr</span><span class="p">)</span>
+                            <span class="k">if</span> <span class="n">rel_id</span> <span class="ow">and</span> <span class="n">rel_id</span> <span class="ow">in</span> <span class="n">rel_to_hash</span><span class="p">:</span>
+                                <span class="n">blocks</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                                    <span class="p">{</span>
+                                        <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">block_index</span><span class="p">,</span>
+                                        <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;image&quot;</span><span class="p">,</span>
+                                        <span class="s2">&quot;image_hash&quot;</span><span class="p">:</span> <span class="n">rel_to_hash</span><span class="p">[</span><span class="n">rel_id</span><span class="p">],</span>
+                                        <span class="s2">&quot;rel_id&quot;</span><span class="p">:</span> <span class="n">rel_id</span><span class="p">,</span>
+                                    <span class="p">}</span>
+                                <span class="p">)</span>
+                                <span class="n">block_index</span> <span class="o">+=</span> <span class="mi">1</span>
+
+                <span class="n">block</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_process_paragraph</span><span class="p">(</span><span class="n">para</span><span class="p">,</span> <span class="n">in_reference_section</span><span class="p">,</span> <span class="n">block_index</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">block</span><span class="p">:</span>
+                    <span class="c1"># Check if entering references section</span>
+                    <span class="k">if</span> <span class="n">block</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;heading&quot;</span> <span class="ow">and</span> <span class="n">block</span><span class="p">[</span><span class="s2">&quot;text&quot;</span><span class="p">]</span> <span class="ow">in</span> <span class="p">(</span>
+                        <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">reference_section_titles</span>
+                    <span class="p">):</span>
+                        <span class="n">in_reference_section</span> <span class="o">=</span> <span class="kc">True</span>
+                        <span class="n">block</span><span class="p">[</span><span class="s2">&quot;is_reference_header&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+
+                    <span class="n">blocks</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">block</span><span class="p">)</span>
+                    <span class="n">block_index</span> <span class="o">+=</span> <span class="mi">1</span>
+
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;tbl&quot;</span><span class="p">:</span>
+                <span class="c1"># Process table</span>
+                <span class="n">table</span> <span class="o">=</span> <span class="n">docx</span><span class="o">.</span><span class="n">table</span><span class="o">.</span><span class="n">Table</span><span class="p">(</span><span class="n">element</span><span class="p">,</span> <span class="n">doc</span><span class="p">)</span>
+                <span class="n">block</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_process_table</span><span class="p">(</span><span class="n">table</span><span class="p">,</span> <span class="n">block_index</span><span class="p">)</span>
+                <span class="n">blocks</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">block</span><span class="p">)</span>
+                <span class="n">block_index</span> <span class="o">+=</span> <span class="mi">1</span>
+
+        <span class="k">return</span> <span class="n">blocks</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_process_paragraph</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">para</span><span class="p">,</span>
+        <span class="n">in_reference_section</span><span class="p">:</span> <span class="nb">bool</span><span class="p">,</span>
+        <span class="n">block_index</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Process a single paragraph.&quot;&quot;&quot;</span>
+        <span class="n">style_name</span> <span class="o">=</span> <span class="p">(</span><span class="n">para</span><span class="o">.</span><span class="n">style</span><span class="o">.</span><span class="n">name</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">if</span> <span class="n">para</span><span class="o">.</span><span class="n">style</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+        <span class="n">text</span> <span class="o">=</span> <span class="n">para</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">text</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">None</span>
+
+        <span class="c1"># Extract runs with formatting info</span>
+        <span class="n">runs</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extract_runs</span><span class="p">(</span><span class="n">para</span><span class="p">)</span>
+
+        <span class="c1"># Base block structure</span>
+        <span class="n">block</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">block_index</span><span class="p">,</span>
+            <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="n">text</span><span class="p">,</span>
+            <span class="s2">&quot;style&quot;</span><span class="p">:</span> <span class="n">style_name</span><span class="p">,</span>
+            <span class="s2">&quot;runs&quot;</span><span class="p">:</span> <span class="n">runs</span><span class="p">,</span>
+        <span class="p">}</span>
+
+        <span class="c1"># Check for equations (OMML)</span>
+        <span class="n">equation_latex</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extract_equation</span><span class="p">(</span><span class="n">para</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">equation_latex</span><span class="p">:</span>
+            <span class="n">block</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;equation&quot;</span>
+            <span class="n">block</span><span class="p">[</span><span class="s2">&quot;latex&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">equation_latex</span>
+            <span class="k">return</span> <span class="n">block</span>
+
+        <span class="c1"># Detect heading (style-based first, then heuristic)</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_detect_heading</span><span class="p">(</span><span class="n">para</span><span class="p">,</span> <span class="n">style_name</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">runs</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">level</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">block</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;heading&quot;</span>
+            <span class="n">block</span><span class="p">[</span><span class="s2">&quot;level&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">level</span>
+            <span class="n">block</span><span class="p">[</span><span class="s2">&quot;detection_method&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="s2">&quot;style&quot;</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_heading_level_from_style</span><span class="p">(</span><span class="n">style_name</span><span class="p">)</span> <span class="k">else</span> <span class="s2">&quot;heuristic&quot;</span>
+            <span class="p">)</span>
+            <span class="k">return</span> <span class="n">block</span>
+
+        <span class="c1"># Detect caption (improved pattern matching)</span>
+        <span class="n">caption_info</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_detect_caption</span><span class="p">(</span><span class="n">style_name</span><span class="p">,</span> <span class="n">text</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">caption_info</span><span class="p">:</span>
+            <span class="n">block</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;caption&quot;</span>
+            <span class="n">block</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">caption_info</span><span class="p">)</span>
+            <span class="k">return</span> <span class="n">block</span>
+
+        <span class="c1"># Reference paragraph</span>
+        <span class="k">if</span> <span class="n">in_reference_section</span><span class="p">:</span>
+            <span class="n">block</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;reference-paragraph&quot;</span>
+            <span class="n">ref_info</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_parse_reference_entry</span><span class="p">(</span><span class="n">text</span><span class="p">)</span>
+            <span class="n">block</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">ref_info</span><span class="p">)</span>
+            <span class="k">return</span> <span class="n">block</span>
+
+        <span class="c1"># List item detection</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_is_list_item</span><span class="p">(</span><span class="n">para</span><span class="p">):</span>
+            <span class="n">block</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;list-item&quot;</span>
+            <span class="n">list_info</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_parse_list_item</span><span class="p">(</span><span class="n">para</span><span class="p">)</span>
+            <span class="n">block</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">list_info</span><span class="p">)</span>
+            <span class="k">return</span> <span class="n">block</span>
+
+        <span class="c1"># Normal paragraph</span>
+        <span class="n">block</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;paragraph&quot;</span>
+        <span class="k">return</span> <span class="n">block</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_detect_heading</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">para</span><span class="p">,</span>
+        <span class="n">style_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">runs</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Detect heading using multiple strategies:</span>
+<span class="sd">        1. Style-based (most reliable)</span>
+<span class="sd">        2. Font-based heuristics (bold, larger size)</span>
+<span class="sd">        3. Content-based (known section titles)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Strategy 1: Style-based detection</span>
+        <span class="n">level</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_heading_level_from_style</span><span class="p">(</span><span class="n">style_name</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">level</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">level</span>
+
+        <span class="c1"># Strategy 2: Font-based heuristics</span>
+        <span class="c1"># Check if entire paragraph is bold and short</span>
+        <span class="n">text_clean</span> <span class="o">=</span> <span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">text_clean</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">100</span><span class="p">:</span>  <span class="c1"># Headings are typically short</span>
+            <span class="n">all_bold</span> <span class="o">=</span> <span class="nb">all</span><span class="p">(</span><span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;bold&quot;</span><span class="p">)</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">runs</span> <span class="k">if</span> <span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+            <span class="k">if</span> <span class="n">all_bold</span> <span class="ow">and</span> <span class="n">runs</span><span class="p">:</span>
+                <span class="c1"># Check font size - headings often larger</span>
+                <span class="n">avg_size</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_average_font_size</span><span class="p">(</span><span class="n">runs</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">avg_size</span> <span class="ow">and</span> <span class="n">avg_size</span> <span class="o">&gt;=</span> <span class="mi">12</span><span class="p">:</span>
+                    <span class="c1"># Check if it looks like a section heading</span>
+                    <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_looks_like_heading</span><span class="p">(</span><span class="n">text_clean</span><span class="p">):</span>
+                        <span class="k">return</span> <span class="mi">1</span> <span class="k">if</span> <span class="n">avg_size</span> <span class="o">&gt;=</span> <span class="mi">14</span> <span class="k">else</span> <span class="mi">2</span>
+
+        <span class="c1"># Strategy 3: Content-based detection (common section titles)</span>
+        <span class="n">text_lower</span> <span class="o">=</span> <span class="n">text_clean</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s2">&quot;.:;&quot;</span><span class="p">)</span>
+        <span class="c1"># Check numbered sections: &quot;1. Introduction&quot;, &quot;2.1 Methods&quot;</span>
+        <span class="n">numbered_match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^(\d+(?:\.\d+)*)[\.:\s]+(.+)$&quot;</span><span class="p">,</span> <span class="n">text_clean</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">numbered_match</span><span class="p">:</span>
+            <span class="n">section_text</span> <span class="o">=</span> <span class="n">numbered_match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+            <span class="k">if</span> <span class="n">section_text</span> <span class="ow">in</span> <span class="n">COMMON_SECTION_HEADINGS</span><span class="p">:</span>
+                <span class="n">depth</span> <span class="o">=</span> <span class="n">numbered_match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)</span>
+                <span class="k">return</span> <span class="nb">min</span><span class="p">(</span><span class="n">depth</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">)</span>
+
+        <span class="c1"># Check unnumbered common headings (if bold or all caps)</span>
+        <span class="k">if</span> <span class="n">text_lower</span> <span class="ow">in</span> <span class="n">COMMON_SECTION_HEADINGS</span><span class="p">:</span>
+            <span class="n">is_bold</span> <span class="o">=</span> <span class="nb">all</span><span class="p">(</span><span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;bold&quot;</span><span class="p">)</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">runs</span> <span class="k">if</span> <span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+            <span class="n">is_all_caps</span> <span class="o">=</span> <span class="n">text_clean</span><span class="o">.</span><span class="n">isupper</span><span class="p">()</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">text_clean</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">3</span>
+            <span class="k">if</span> <span class="n">is_bold</span> <span class="ow">or</span> <span class="n">is_all_caps</span><span class="p">:</span>
+                <span class="k">return</span> <span class="mi">1</span>
+
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_looks_like_heading</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Check if text looks like a heading based on content patterns.&quot;&quot;&quot;</span>
+        <span class="n">text_lower</span> <span class="o">=</span> <span class="n">text</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s2">&quot;.:;&quot;</span><span class="p">)</span>
+
+        <span class="c1"># Check common section headings</span>
+        <span class="k">if</span> <span class="n">text_lower</span> <span class="ow">in</span> <span class="n">COMMON_SECTION_HEADINGS</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">True</span>
+
+        <span class="c1"># Check numbered sections</span>
+        <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^\d+(?:\.\d+)*\s+\w&quot;</span><span class="p">,</span> <span class="n">text</span><span class="p">):</span>
+            <span class="k">return</span> <span class="kc">True</span>
+
+        <span class="c1"># All caps short text</span>
+        <span class="k">if</span> <span class="n">text</span><span class="o">.</span><span class="n">isupper</span><span class="p">()</span> <span class="ow">and</span> <span class="mi">3</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">text</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">50</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">True</span>
+
+        <span class="k">return</span> <span class="kc">False</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_get_average_font_size</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">runs</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]])</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">float</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get average font size from runs.&quot;&quot;&quot;</span>
+        <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;font_size&quot;</span><span class="p">]</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">runs</span> <span class="k">if</span> <span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;font_size&quot;</span><span class="p">)]</span>
+        <span class="k">return</span> <span class="nb">sum</span><span class="p">(</span><span class="n">sizes</span><span class="p">)</span> <span class="o">/</span> <span class="nb">len</span><span class="p">(</span><span class="n">sizes</span><span class="p">)</span> <span class="k">if</span> <span class="n">sizes</span> <span class="k">else</span> <span class="kc">None</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_detect_caption</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">style_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Detect and parse captions using multiple patterns.</span>
+<span class="sd">        Returns caption info dict or None.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Check by style first</span>
+        <span class="k">if</span> <span class="n">style_name</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">caption_style</span><span class="p">:</span>
+            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_parse_caption</span><span class="p">(</span><span class="n">text</span><span class="p">)</span>
+
+        <span class="c1"># Check using comprehensive patterns</span>
+        <span class="n">text_stripped</span> <span class="o">=</span> <span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="k">for</span> <span class="n">pattern</span><span class="p">,</span> <span class="n">caption_type</span> <span class="ow">in</span> <span class="n">CAPTION_PATTERNS</span><span class="p">:</span>
+            <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">text_stripped</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">IGNORECASE</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+                <span class="k">return</span> <span class="p">{</span>
+                    <span class="s2">&quot;caption_type&quot;</span><span class="p">:</span> <span class="n">caption_type</span><span class="p">,</span>
+                    <span class="s2">&quot;number&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">2</span><span class="p">)),</span>
+                    <span class="s2">&quot;caption_text&quot;</span><span class="p">:</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">(),</span>
+                <span class="p">}</span>
+
+        <span class="c1"># Check profile-specific prefixes</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_is_caption</span><span class="p">(</span><span class="n">style_name</span><span class="p">,</span> <span class="n">text</span><span class="p">):</span>
+            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_parse_caption</span><span class="p">(</span><span class="n">text</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_extract_equation</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">para</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Extract equation from paragraph if it contains OMML (Office Math Markup).</span>
+<span class="sd">        Returns LaTeX representation or None.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="c1"># Check for oMath elements</span>
+            <span class="n">omml_ns</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="s2">&quot;m&quot;</span><span class="p">:</span> <span class="s2">&quot;http://schemas.openxmlformats.org/officeDocument/2006/math&quot;</span>
+            <span class="p">}</span>
+            <span class="n">math_elements</span> <span class="o">=</span> <span class="n">para</span><span class="o">.</span><span class="n">_element</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="s2">&quot;.//m:oMath&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">math_elements</span><span class="p">:</span>
+                <span class="k">return</span> <span class="kc">None</span>
+
+            <span class="c1"># Basic OMML to LaTeX conversion</span>
+            <span class="n">latex_parts</span> <span class="o">=</span> <span class="p">[]</span>
+            <span class="k">for</span> <span class="n">math_elem</span> <span class="ow">in</span> <span class="n">math_elements</span><span class="p">:</span>
+                <span class="n">latex</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_omml_to_latex</span><span class="p">(</span><span class="n">math_elem</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">latex</span><span class="p">:</span>
+                    <span class="n">latex_parts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">latex</span><span class="p">)</span>
+
+            <span class="k">return</span> <span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">latex_parts</span><span class="p">)</span> <span class="k">if</span> <span class="n">latex_parts</span> <span class="k">else</span> <span class="kc">None</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_omml_to_latex</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">math_elem</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Convert OMML element to LaTeX string.</span>
+<span class="sd">        This is a basic converter - handles common cases.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">omml_ns</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;m&quot;</span><span class="p">:</span> <span class="s2">&quot;http://schemas.openxmlformats.org/officeDocument/2006/math&quot;</span><span class="p">}</span>
+
+        <span class="k">def</span><span class="w"> </span><span class="nf">get_text</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Recursively get text from element.&quot;&quot;&quot;</span>
+            <span class="n">texts</span> <span class="o">=</span> <span class="p">[]</span>
+            <span class="k">if</span> <span class="n">elem</span><span class="o">.</span><span class="n">text</span><span class="p">:</span>
+                <span class="n">texts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">elem</span><span class="o">.</span><span class="n">text</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">elem</span><span class="p">:</span>
+                <span class="n">texts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_text</span><span class="p">(</span><span class="n">child</span><span class="p">))</span>
+                <span class="k">if</span> <span class="n">child</span><span class="o">.</span><span class="n">tail</span><span class="p">:</span>
+                    <span class="n">texts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">child</span><span class="o">.</span><span class="n">tail</span><span class="p">)</span>
+            <span class="k">return</span> <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">texts</span><span class="p">)</span>
+
+        <span class="k">def</span><span class="w"> </span><span class="nf">convert_element</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Convert a single OMML element to LaTeX.&quot;&quot;&quot;</span>
+            <span class="n">tag</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">tag</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;}&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="s2">&quot;}&quot;</span> <span class="ow">in</span> <span class="n">elem</span><span class="o">.</span><span class="n">tag</span> <span class="k">else</span> <span class="n">elem</span><span class="o">.</span><span class="n">tag</span>
+
+            <span class="k">if</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;r&quot;</span><span class="p">:</span>  <span class="c1"># Run (text)</span>
+                <span class="k">return</span> <span class="n">get_text</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;f&quot;</span><span class="p">:</span>  <span class="c1"># Fraction</span>
+                <span class="n">num</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:num&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">den</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:den&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">num_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">num</span><span class="p">)</span> <span class="k">if</span> <span class="n">num</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="n">den_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">den</span><span class="p">)</span> <span class="k">if</span> <span class="n">den</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\\</span><span class="s2">frac</span><span class="se">{{</span><span class="si">{</span><span class="n">num_tex</span><span class="si">}</span><span class="se">}}{{</span><span class="si">{</span><span class="n">den_tex</span><span class="si">}</span><span class="se">}}</span><span class="s2">&quot;</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;rad&quot;</span><span class="p">:</span>  <span class="c1"># Radical/root</span>
+                <span class="n">deg</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:deg&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">content</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:e&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">content_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">content</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="k">if</span> <span class="n">deg</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">get_text</span><span class="p">(</span><span class="n">deg</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+                    <span class="n">deg_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">deg</span><span class="p">)</span>
+                    <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\\</span><span class="s2">sqrt[</span><span class="si">{</span><span class="n">deg_tex</span><span class="si">}</span><span class="s2">]</span><span class="se">{{</span><span class="si">{</span><span class="n">content_tex</span><span class="si">}</span><span class="se">}}</span><span class="s2">&quot;</span>
+                <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\\</span><span class="s2">sqrt</span><span class="se">{{</span><span class="si">{</span><span class="n">content_tex</span><span class="si">}</span><span class="se">}}</span><span class="s2">&quot;</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;sSup&quot;</span><span class="p">:</span>  <span class="c1"># Superscript</span>
+                <span class="n">base</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:e&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">sup</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:sup&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">base_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">base</span><span class="p">)</span> <span class="k">if</span> <span class="n">base</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="n">sup_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">sup</span><span class="p">)</span> <span class="k">if</span> <span class="n">sup</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">base_tex</span><span class="si">}</span><span class="s2">^</span><span class="se">{{</span><span class="si">{</span><span class="n">sup_tex</span><span class="si">}</span><span class="se">}}</span><span class="s2">&quot;</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;sSub&quot;</span><span class="p">:</span>  <span class="c1"># Subscript</span>
+                <span class="n">base</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:e&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">sub</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:sub&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">base_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">base</span><span class="p">)</span> <span class="k">if</span> <span class="n">base</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="n">sub_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">sub</span><span class="p">)</span> <span class="k">if</span> <span class="n">sub</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">base_tex</span><span class="si">}</span><span class="s2">_</span><span class="se">{{</span><span class="si">{</span><span class="n">sub_tex</span><span class="si">}</span><span class="se">}}</span><span class="s2">&quot;</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;sSubSup&quot;</span><span class="p">:</span>  <span class="c1"># Sub-superscript</span>
+                <span class="n">base</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:e&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">sub</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:sub&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">sup</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:sup&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">base_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">base</span><span class="p">)</span> <span class="k">if</span> <span class="n">base</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="n">sub_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">sub</span><span class="p">)</span> <span class="k">if</span> <span class="n">sub</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="n">sup_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">sup</span><span class="p">)</span> <span class="k">if</span> <span class="n">sup</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">base_tex</span><span class="si">}</span><span class="s2">_</span><span class="se">{{</span><span class="si">{</span><span class="n">sub_tex</span><span class="si">}</span><span class="se">}}</span><span class="s2">^</span><span class="se">{{</span><span class="si">{</span><span class="n">sup_tex</span><span class="si">}</span><span class="se">}}</span><span class="s2">&quot;</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;nary&quot;</span><span class="p">:</span>  <span class="c1"># N-ary (sum, product, integral)</span>
+                <span class="n">chr_elem</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;.//m:chr&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">symbol</span> <span class="o">=</span> <span class="n">chr_elem</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;m:val&quot;</span><span class="p">))</span> <span class="k">if</span> <span class="n">chr_elem</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;∑&quot;</span>
+                <span class="n">symbol_map</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;∑&quot;</span><span class="p">:</span> <span class="s2">&quot;</span><span class="se">\\</span><span class="s2">sum&quot;</span><span class="p">,</span> <span class="s2">&quot;∏&quot;</span><span class="p">:</span> <span class="s2">&quot;</span><span class="se">\\</span><span class="s2">prod&quot;</span><span class="p">,</span> <span class="s2">&quot;∫&quot;</span><span class="p">:</span> <span class="s2">&quot;</span><span class="se">\\</span><span class="s2">int&quot;</span><span class="p">,</span> <span class="s2">&quot;∮&quot;</span><span class="p">:</span> <span class="s2">&quot;</span><span class="se">\\</span><span class="s2">oint&quot;</span><span class="p">}</span>
+                <span class="n">latex_sym</span> <span class="o">=</span> <span class="n">symbol_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">symbol</span><span class="p">,</span> <span class="n">symbol</span><span class="p">)</span>
+                <span class="n">sub</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:sub&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">sup</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:sup&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">content</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:e&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">result</span> <span class="o">=</span> <span class="n">latex_sym</span>
+                <span class="k">if</span> <span class="n">sub</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">result</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;_</span><span class="se">{{</span><span class="si">{</span><span class="n">convert_children</span><span class="p">(</span><span class="n">sub</span><span class="p">)</span><span class="si">}</span><span class="se">}}</span><span class="s2">&quot;</span>
+                <span class="k">if</span> <span class="n">sup</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">result</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;^</span><span class="se">{{</span><span class="si">{</span><span class="n">convert_children</span><span class="p">(</span><span class="n">sup</span><span class="p">)</span><span class="si">}</span><span class="se">}}</span><span class="s2">&quot;</span>
+                <span class="k">if</span> <span class="n">content</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">result</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot; </span><span class="si">{</span><span class="n">convert_children</span><span class="p">(</span><span class="n">content</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+                <span class="k">return</span> <span class="n">result</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;d&quot;</span><span class="p">:</span>  <span class="c1"># Delimiter (parentheses, brackets)</span>
+                <span class="n">content</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;m:e&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">content_tex</span> <span class="o">=</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">content</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+                <span class="n">beg</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;.//m:begChr&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">end</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;.//m:endChr&quot;</span><span class="p">,</span> <span class="n">namespaces</span><span class="o">=</span><span class="n">omml_ns</span><span class="p">)</span>
+                <span class="n">left</span> <span class="o">=</span> <span class="n">beg</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;m:val&quot;</span><span class="p">))</span> <span class="k">if</span> <span class="n">beg</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;(&quot;</span>
+                <span class="n">right</span> <span class="o">=</span> <span class="n">end</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;m:val&quot;</span><span class="p">))</span> <span class="k">if</span> <span class="n">end</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s2">&quot;)&quot;</span>
+                <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\\</span><span class="s2">left</span><span class="si">{</span><span class="n">left</span><span class="si">}{</span><span class="n">content_tex</span><span class="si">}</span><span class="se">\\</span><span class="s2">right</span><span class="si">{</span><span class="n">right</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="k">elif</span> <span class="n">tag</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;e&quot;</span><span class="p">,</span> <span class="s2">&quot;num&quot;</span><span class="p">,</span> <span class="s2">&quot;den&quot;</span><span class="p">,</span> <span class="s2">&quot;sub&quot;</span><span class="p">,</span> <span class="s2">&quot;sup&quot;</span><span class="p">,</span> <span class="s2">&quot;deg&quot;</span><span class="p">):</span>
+                <span class="c1"># Container elements - just process children</span>
+                <span class="k">return</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="c1"># Unknown element - try to get text</span>
+                <span class="k">return</span> <span class="n">convert_children</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span>
+
+        <span class="k">def</span><span class="w"> </span><span class="nf">convert_children</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Convert all children of an element.&quot;&quot;&quot;</span>
+            <span class="k">if</span> <span class="n">elem</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="k">return</span> <span class="s2">&quot;&quot;</span>
+            <span class="n">parts</span> <span class="o">=</span> <span class="p">[]</span>
+            <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">elem</span><span class="p">:</span>
+                <span class="n">parts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">convert_element</span><span class="p">(</span><span class="n">child</span><span class="p">))</span>
+            <span class="k">return</span> <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">parts</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="n">convert_element</span><span class="p">(</span><span class="n">math_elem</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_is_list_item</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">para</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Check if paragraph is a list item.&quot;&quot;&quot;</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="c1"># Check for numbering properties</span>
+            <span class="n">pPr</span> <span class="o">=</span> <span class="n">para</span><span class="o">.</span><span class="n">_element</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:pPr&quot;</span><span class="p">))</span>
+            <span class="k">if</span> <span class="n">pPr</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">numPr</span> <span class="o">=</span> <span class="n">pPr</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:numPr&quot;</span><span class="p">))</span>
+                <span class="k">if</span> <span class="n">numPr</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="k">return</span> <span class="kc">True</span>
+
+            <span class="c1"># Check for bullet/number at start of text</span>
+            <span class="n">text</span> <span class="o">=</span> <span class="n">para</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+            <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^[\u2022\u2023\u25E6\u2043\u2219•‣◦⁃∙]\s&quot;</span><span class="p">,</span> <span class="n">text</span><span class="p">):</span>
+                <span class="k">return</span> <span class="kc">True</span>
+            <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span>
+                <span class="sa">r</span><span class="s2">&quot;^(\d+[\.\):]|\([a-z]\)|\([ivxlc]+\)|[a-z][\.\)])\s&quot;</span><span class="p">,</span>
+                <span class="n">text</span><span class="p">,</span>
+                <span class="n">re</span><span class="o">.</span><span class="n">IGNORECASE</span><span class="p">,</span>
+            <span class="p">):</span>
+                <span class="k">return</span> <span class="kc">True</span>
+
+            <span class="k">return</span> <span class="kc">False</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">False</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_parse_list_item</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">para</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Parse list item to extract level and content.&quot;&quot;&quot;</span>
+        <span class="n">info</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;list_type&quot;</span><span class="p">:</span> <span class="s2">&quot;unordered&quot;</span><span class="p">,</span> <span class="s2">&quot;level&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">}</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">pPr</span> <span class="o">=</span> <span class="n">para</span><span class="o">.</span><span class="n">_element</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:pPr&quot;</span><span class="p">))</span>
+            <span class="k">if</span> <span class="n">pPr</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">numPr</span> <span class="o">=</span> <span class="n">pPr</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:numPr&quot;</span><span class="p">))</span>
+                <span class="k">if</span> <span class="n">numPr</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">ilvl</span> <span class="o">=</span> <span class="n">numPr</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:ilvl&quot;</span><span class="p">))</span>
+                    <span class="k">if</span> <span class="n">ilvl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                        <span class="n">info</span><span class="p">[</span><span class="s2">&quot;level&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">ilvl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:val&quot;</span><span class="p">),</span> <span class="mi">0</span><span class="p">))</span>
+
+            <span class="c1"># Detect ordered vs unordered</span>
+            <span class="n">text</span> <span class="o">=</span> <span class="n">para</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+            <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^\d+[\.\):]\s&quot;</span><span class="p">,</span> <span class="n">text</span><span class="p">):</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;list_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;ordered&quot;</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+        <span class="k">return</span> <span class="n">info</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_extract_runs</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">para</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Extract formatted runs from a paragraph.&quot;&quot;&quot;</span>
+        <span class="n">runs</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">para</span><span class="o">.</span><span class="n">runs</span><span class="p">:</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">run</span><span class="o">.</span><span class="n">text</span><span class="p">:</span>
+                <span class="k">continue</span>
+            <span class="n">run_data</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="n">run</span><span class="o">.</span><span class="n">text</span><span class="p">,</span>
+                <span class="s2">&quot;bold&quot;</span><span class="p">:</span> <span class="n">run</span><span class="o">.</span><span class="n">bold</span><span class="p">,</span>
+                <span class="s2">&quot;italic&quot;</span><span class="p">:</span> <span class="n">run</span><span class="o">.</span><span class="n">italic</span><span class="p">,</span>
+                <span class="s2">&quot;underline&quot;</span><span class="p">:</span> <span class="n">run</span><span class="o">.</span><span class="n">underline</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">,</span>
+            <span class="p">}</span>
+            <span class="k">if</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">size</span><span class="p">:</span>
+                <span class="n">run_data</span><span class="p">[</span><span class="s2">&quot;font_size&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">size</span><span class="o">.</span><span class="n">pt</span>
+            <span class="k">if</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">name</span><span class="p">:</span>
+                <span class="n">run_data</span><span class="p">[</span><span class="s2">&quot;font_name&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">name</span>
+            <span class="n">runs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">run_data</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">runs</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_heading_level_from_style</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">style_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Return heading level for a given Word style, or None.&quot;&quot;&quot;</span>
+        <span class="k">for</span> <span class="n">level</span><span class="p">,</span> <span class="n">expected_style</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">heading_styles</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="k">if</span> <span class="n">style_name</span> <span class="o">==</span> <span class="n">expected_style</span><span class="p">:</span>
+                <span class="k">return</span> <span class="n">level</span>
+        <span class="k">return</span> <span class="kc">None</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_is_caption</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">style_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Check if paragraph is a caption.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">style_name</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">caption_style</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">True</span>
+
+        <span class="c1"># Check by prefix</span>
+        <span class="n">text_lower</span> <span class="o">=</span> <span class="n">text</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+        <span class="n">prefixes</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">figure_caption_prefixes</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">table_caption_prefixes</span>
+        <span class="p">)</span>
+        <span class="k">for</span> <span class="n">prefix</span> <span class="ow">in</span> <span class="n">prefixes</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">text_lower</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">prefix</span><span class="o">.</span><span class="n">lower</span><span class="p">()):</span>
+                <span class="k">return</span> <span class="kc">True</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_parse_caption</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Parse caption text to extract figure/table number.&quot;&quot;&quot;</span>
+        <span class="n">info</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+
+        <span class="c1"># Check figure</span>
+        <span class="k">for</span> <span class="n">prefix</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">figure_caption_prefixes</span><span class="p">:</span>
+            <span class="n">pattern</span> <span class="o">=</span> <span class="sa">rf</span><span class="s2">&quot;^</span><span class="si">{</span><span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">prefix</span><span class="p">)</span><span class="si">}</span><span class="s2">\.?\s*(\d+)[\.:]?\s*(.*)$&quot;</span>
+            <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">IGNORECASE</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;caption_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;figure&quot;</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;number&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;caption_text&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+                <span class="k">return</span> <span class="n">info</span>
+
+        <span class="c1"># Check table</span>
+        <span class="k">for</span> <span class="n">prefix</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">table_caption_prefixes</span><span class="p">:</span>
+            <span class="n">pattern</span> <span class="o">=</span> <span class="sa">rf</span><span class="s2">&quot;^</span><span class="si">{</span><span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">prefix</span><span class="p">)</span><span class="si">}</span><span class="s2">\.?\s*(\d+)[\.:]?\s*(.*)$&quot;</span>
+            <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">IGNORECASE</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;caption_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;table&quot;</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;number&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;caption_text&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+                <span class="k">return</span> <span class="n">info</span>
+
+        <span class="n">info</span><span class="p">[</span><span class="s2">&quot;caption_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;unknown&quot;</span>
+        <span class="n">info</span><span class="p">[</span><span class="s2">&quot;caption_text&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">text</span>
+        <span class="k">return</span> <span class="n">info</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_parse_reference_entry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Parse a reference entry to extract citation number.&quot;&quot;&quot;</span>
+        <span class="n">info</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+
+        <span class="c1"># Try to extract numbered reference: [1], 1., (1), etc.</span>
+        <span class="n">patterns</span> <span class="o">=</span> <span class="p">[</span>
+            <span class="sa">r</span><span class="s2">&quot;^\[(\d+)\]&quot;</span><span class="p">,</span>  <span class="c1"># [1] Author...</span>
+            <span class="sa">r</span><span class="s2">&quot;^(\d+)\.&quot;</span><span class="p">,</span>  <span class="c1"># 1. Author...</span>
+            <span class="sa">r</span><span class="s2">&quot;^\((\d+)\)&quot;</span><span class="p">,</span>  <span class="c1"># (1) Author...</span>
+        <span class="p">]</span>
+        <span class="k">for</span> <span class="n">pattern</span> <span class="ow">in</span> <span class="n">patterns</span><span class="p">:</span>
+            <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">text</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;ref_number&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
+                <span class="n">info</span><span class="p">[</span><span class="s2">&quot;ref_text&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">text</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+                <span class="k">break</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">info</span><span class="p">[</span><span class="s2">&quot;ref_text&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">text</span>
+
+        <span class="k">return</span> <span class="n">info</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_process_table</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">table</span><span class="p">,</span>
+        <span class="n">block_index</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Process a table.&quot;&quot;&quot;</span>
+        <span class="n">rows</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="o">.</span><span class="n">rows</span><span class="p">:</span>
+            <span class="n">cells</span> <span class="o">=</span> <span class="p">[]</span>
+            <span class="k">for</span> <span class="n">cell</span> <span class="ow">in</span> <span class="n">row</span><span class="o">.</span><span class="n">cells</span><span class="p">:</span>
+                <span class="n">cells</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cell</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+            <span class="n">rows</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cells</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="p">{</span>
+            <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">block_index</span><span class="p">,</span>
+            <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;table&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;rows&quot;</span><span class="p">:</span> <span class="n">rows</span><span class="p">,</span>
+            <span class="s2">&quot;num_rows&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">rows</span><span class="p">),</span>
+            <span class="s2">&quot;num_cols&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">rows</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="k">if</span> <span class="n">rows</span> <span class="k">else</span> <span class="mi">0</span><span class="p">,</span>
+        <span class="p">}</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_extract_images</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">source_path</span><span class="p">:</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Extract embedded images from the document.&quot;&quot;&quot;</span>
+        <span class="n">images</span> <span class="o">=</span> <span class="p">[]</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">rel_id</span><span class="p">,</span> <span class="n">rel</span> <span class="ow">in</span> <span class="n">doc</span><span class="o">.</span><span class="n">part</span><span class="o">.</span><span class="n">rels</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+                <span class="k">if</span> <span class="s2">&quot;image&quot;</span> <span class="ow">in</span> <span class="n">rel</span><span class="o">.</span><span class="n">reltype</span><span class="p">:</span>
+                    <span class="n">image_part</span> <span class="o">=</span> <span class="n">rel</span><span class="o">.</span><span class="n">target_part</span>
+                    <span class="n">image_bytes</span> <span class="o">=</span> <span class="n">image_part</span><span class="o">.</span><span class="n">blob</span>
+
+                    <span class="c1"># Generate hash for deduplication</span>
+                    <span class="n">image_hash</span> <span class="o">=</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">md5</span><span class="p">(</span><span class="n">image_bytes</span><span class="p">)</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">12</span><span class="p">]</span>
+
+                    <span class="c1"># Determine extension from content type</span>
+                    <span class="n">content_type</span> <span class="o">=</span> <span class="n">image_part</span><span class="o">.</span><span class="n">content_type</span>
+                    <span class="n">ext_map</span> <span class="o">=</span> <span class="p">{</span>
+                        <span class="s2">&quot;image/png&quot;</span><span class="p">:</span> <span class="s2">&quot;.png&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;image/jpeg&quot;</span><span class="p">:</span> <span class="s2">&quot;.jpg&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;image/gif&quot;</span><span class="p">:</span> <span class="s2">&quot;.gif&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;image/tiff&quot;</span><span class="p">:</span> <span class="s2">&quot;.tiff&quot;</span><span class="p">,</span>
+                        <span class="s2">&quot;image/bmp&quot;</span><span class="p">:</span> <span class="s2">&quot;.bmp&quot;</span><span class="p">,</span>
+                    <span class="p">}</span>
+                    <span class="n">ext</span> <span class="o">=</span> <span class="n">ext_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">content_type</span><span class="p">,</span> <span class="s2">&quot;.png&quot;</span><span class="p">)</span>
+
+                    <span class="n">images</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                        <span class="p">{</span>
+                            <span class="s2">&quot;rel_id&quot;</span><span class="p">:</span> <span class="n">rel_id</span><span class="p">,</span>
+                            <span class="s2">&quot;hash&quot;</span><span class="p">:</span> <span class="n">image_hash</span><span class="p">,</span>
+                            <span class="s2">&quot;content_type&quot;</span><span class="p">:</span> <span class="n">content_type</span><span class="p">,</span>
+                            <span class="s2">&quot;extension&quot;</span><span class="p">:</span> <span class="n">ext</span><span class="p">,</span>
+                            <span class="s2">&quot;size_bytes&quot;</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">image_bytes</span><span class="p">),</span>
+                            <span class="s2">&quot;data&quot;</span><span class="p">:</span> <span class="n">image_bytes</span><span class="p">,</span>  <span class="c1"># Raw bytes</span>
+                        <span class="p">}</span>
+                    <span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="k">pass</span>  <span class="c1"># Image extraction is optional</span>
+
+        <span class="k">return</span> <span class="n">images</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_parse_references</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">blocks</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Extract and structure references from blocks.&quot;&quot;&quot;</span>
+        <span class="n">references</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">block</span> <span class="ow">in</span> <span class="n">blocks</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;reference-paragraph&quot;</span><span class="p">:</span>
+                <span class="n">ref_entry</span> <span class="o">=</span> <span class="p">{</span>
+                    <span class="s2">&quot;number&quot;</span><span class="p">:</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;ref_number&quot;</span><span class="p">),</span>
+                    <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;ref_text&quot;</span><span class="p">,</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)),</span>
+                    <span class="s2">&quot;raw&quot;</span><span class="p">:</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">),</span>
+                <span class="p">}</span>
+                <span class="n">references</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ref_entry</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">references</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;WordReader&quot;</span><span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_msword/track_changes.html b/src/scitex/_sphinx_html/_modules/scitex_msword/track_changes.html
new file mode 100644
index 000000000..b399e7674
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_msword/track_changes.html
@@ -0,0 +1,1160 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_msword.track_changes &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
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+</head>
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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+</ul>
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+        </div>
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+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_msword.html">scitex_msword</a></li>
+      <li class="breadcrumb-item active">scitex_msword.track_changes</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_msword.track_changes</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2026-06-02 00:00:00</span>
+<span class="c1"># File: src/scitex_msword/track_changes.py</span>
+<span class="c1">#</span>
+<span class="c1"># Part of scitex-msword (AGPL-3.0-only). See LICENSE at the repo root.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Track-Changes (revision) utilities for python-docx Documents.</span>
+
+<span class="sd">This module surfaces the OOXML revision primitives so agents can:</span>
+
+<span class="sd">1. Toggle Word&#39;s &quot;Track Changes&quot; switch (``&lt;w:trackChanges/&gt;`` in</span>
+<span class="sd">   ``word/settings.xml``) via :func:`enable_track_changes`.</span>
+<span class="sd">2. Wrap agent edits as ``&lt;w:ins&gt;`` / ``&lt;w:del&gt;`` revisions</span>
+<span class="sd">   (:func:`wrap_as_tracked_insertion`, :func:`wrap_as_tracked_deletion`).</span>
+<span class="sd">3. Extract all tracked changes (:func:`extract_tracked_changes`).</span>
+<span class="sd">4. Accept / reject all changes in bulk</span>
+<span class="sd">   (:func:`accept_all_tracked_changes`, :func:`reject_all_tracked_changes`).</span>
+
+<span class="sd">OOXML refs: ``w:trackChanges`` (ECMA-376 §17.15.1.86), ``w:ins``</span>
+<span class="sd">(§17.13.5.18), ``w:del`` (§17.13.5.14), ``w:delText`` (§17.13.5.15).</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timezone</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Sequence</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.document</span><span class="w"> </span><span class="kn">import</span> <span class="n">Document</span> <span class="k">as</span> <span class="n">DocxDocument</span>  <span class="c1"># type: ignore[import-untyped]</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.oxml.ns</span><span class="w"> </span><span class="kn">import</span> <span class="n">qn</span>  <span class="c1"># type: ignore[import-untyped]</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.text.paragraph</span><span class="w"> </span><span class="kn">import</span> <span class="n">Paragraph</span>  <span class="c1"># type: ignore[import-untyped]</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.text.run</span><span class="w"> </span><span class="kn">import</span> <span class="n">Run</span>  <span class="c1"># type: ignore[import-untyped]</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">lxml</span><span class="w"> </span><span class="kn">import</span> <span class="n">etree</span>
+
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">True</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="ne">Exception</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="k">except</span> <span class="ne">ImportError</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">False</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span> <span class="o">=</span> <span class="n">exc</span>
+    <span class="n">DocxDocument</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment,misc]</span>
+    <span class="n">Paragraph</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment,misc]</span>
+    <span class="n">Run</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment,misc]</span>
+    <span class="n">qn</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment]</span>
+    <span class="n">etree</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># type: ignore[assignment]</span>
+
+
+<span class="n">_W_NS</span> <span class="o">=</span> <span class="s2">&quot;http://schemas.openxmlformats.org/wordprocessingml/2006/main&quot;</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_ensure_docx_available</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">DOCX_AVAILABLE</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;python-docx (and lxml) are required for scitex_msword.track_changes. &quot;</span>
+            <span class="s2">&quot;Install via `pip install python-docx`.&quot;</span>
+        <span class="p">)</span> <span class="kn">from</span><span class="w"> </span><span class="nn">_DOCX_IMPORT_ERROR</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># Internal helpers</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_settings_element</span><span class="p">(</span><span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the lxml ``&lt;w:settings&gt;`` element for the document.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">document</span><span class="o">.</span><span class="n">settings</span><span class="o">.</span><span class="n">element</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_now_iso</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;UTC ISO-8601 timestamp at second precision (Word-friendly).&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">(</span><span class="n">timezone</span><span class="o">.</span><span class="n">utc</span><span class="p">)</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">&quot;%Y-%m-</span><span class="si">%d</span><span class="s2">T%H:%M:%SZ&quot;</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_make_w_element</span><span class="p">(</span><span class="n">tag_local_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="o">**</span><span class="n">attrs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Create a ``w:&lt;tag&gt;`` lxml element with namespaced ``w:`` attributes.&quot;&quot;&quot;</span>
+    <span class="n">el</span> <span class="o">=</span> <span class="n">etree</span><span class="o">.</span><span class="n">Element</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="si">{</span><span class="n">tag_local_name</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">attrs</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">value</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="n">el</span><span class="o">.</span><span class="n">set</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="si">{</span><span class="n">key</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">value</span><span class="p">))</span>
+    <span class="k">return</span> <span class="n">el</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_scan_max_revision_id</span><span class="p">(</span><span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Largest ``w:id`` currently used on a ``&lt;w:ins&gt;`` / ``&lt;w:del&gt;``.&quot;&quot;&quot;</span>
+    <span class="n">body</span> <span class="o">=</span> <span class="n">document</span><span class="o">.</span><span class="n">element</span><span class="o">.</span><span class="n">body</span>
+    <span class="n">ins_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">ins&quot;</span>
+    <span class="n">del_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">del&quot;</span>
+    <span class="n">max_id</span> <span class="o">=</span> <span class="mi">0</span>
+    <span class="k">for</span> <span class="n">elem</span> <span class="ow">in</span> <span class="n">body</span><span class="o">.</span><span class="n">iter</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">elem</span><span class="o">.</span><span class="n">tag</span> <span class="ow">in</span> <span class="p">(</span><span class="n">ins_tag</span><span class="p">,</span> <span class="n">del_tag</span><span class="p">):</span>
+            <span class="n">raw</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:id&quot;</span><span class="p">))</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">cid</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">raw</span><span class="p">)</span> <span class="k">if</span> <span class="n">raw</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="mi">0</span>
+            <span class="k">except</span> <span class="p">(</span><span class="ne">TypeError</span><span class="p">,</span> <span class="ne">ValueError</span><span class="p">):</span>
+                <span class="n">cid</span> <span class="o">=</span> <span class="mi">0</span>
+            <span class="k">if</span> <span class="n">cid</span> <span class="o">&gt;</span> <span class="n">max_id</span><span class="p">:</span>
+                <span class="n">max_id</span> <span class="o">=</span> <span class="n">cid</span>
+    <span class="k">return</span> <span class="n">max_id</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_resolve_runs</span><span class="p">(</span>
+    <span class="n">paragraph</span><span class="p">:</span> <span class="s2">&quot;Paragraph&quot;</span><span class="p">,</span>
+    <span class="n">runs</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">Any</span><span class="p">],</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="s2">&quot;Run&quot;</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resolve Run objects / run indices into a list of paragraph Runs.&quot;&quot;&quot;</span>
+    <span class="n">all_runs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">paragraph</span><span class="o">.</span><span class="n">runs</span><span class="p">)</span>
+    <span class="n">elems</span> <span class="o">=</span> <span class="p">[</span><span class="n">r</span><span class="o">.</span><span class="n">_r</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">all_runs</span><span class="p">]</span>
+    <span class="n">resolved</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Run</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">:</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+            <span class="k">if</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">item</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">all_runs</span><span class="p">):</span>
+                <span class="n">resolved</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">all_runs</span><span class="p">[</span><span class="n">item</span><span class="p">])</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">elem</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="s2">&quot;_r&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="s2">&quot;element&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">elem</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">elem</span> <span class="ow">in</span> <span class="n">elems</span><span class="p">:</span>
+                <span class="n">resolved</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">resolved</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_wrap_runs_in_element</span><span class="p">(</span>
+    <span class="n">paragraph</span><span class="p">:</span> <span class="s2">&quot;Paragraph&quot;</span><span class="p">,</span>
+    <span class="n">target_runs</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="s2">&quot;Run&quot;</span><span class="p">],</span>
+    <span class="n">wrapper_tag</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+    <span class="n">attrs</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Wrap each run&#39;s ``&lt;w:r&gt;`` in a new ``&lt;w:wrapper_tag&gt;`` parent.&quot;&quot;&quot;</span>
+    <span class="n">wrappers</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">target_runs</span><span class="p">:</span>
+        <span class="n">r_elem</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">_r</span>
+        <span class="n">parent</span> <span class="o">=</span> <span class="n">r_elem</span><span class="o">.</span><span class="n">getparent</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">parent</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="n">idx</span> <span class="o">=</span> <span class="n">parent</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_elem</span><span class="p">)</span>
+        <span class="n">wrapper</span> <span class="o">=</span> <span class="n">_make_w_element</span><span class="p">(</span><span class="n">wrapper_tag</span><span class="p">,</span> <span class="o">**</span><span class="n">attrs</span><span class="p">)</span>
+        <span class="n">parent</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">wrapper</span><span class="p">)</span>
+        <span class="n">parent</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">r_elem</span><span class="p">)</span>
+        <span class="n">wrapper</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">r_elem</span><span class="p">)</span>
+        <span class="n">wrappers</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">wrapper</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">wrappers</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_next_revision_id</span><span class="p">(</span><span class="n">paragraph</span><span class="p">:</span> <span class="s2">&quot;Paragraph&quot;</span><span class="p">,</span> <span class="n">explicit</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resolve the ``w:id`` for a new revision, defaulting to max+1.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">explicit</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">explicit</span><span class="p">)</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">document</span> <span class="o">=</span> <span class="n">paragraph</span><span class="o">.</span><span class="n">part</span><span class="o">.</span><span class="n">document</span>  <span class="c1"># type: ignore[attr-defined]</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="n">document</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="k">if</span> <span class="n">document</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span> <span class="mi">1</span>
+    <span class="k">return</span> <span class="n">_scan_max_revision_id</span><span class="p">(</span><span class="n">document</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span>
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># API 1: enable_track_changes / is_track_changes_enabled</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<div class="viewcode-block" id="enable_track_changes">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.enable_track_changes">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">enable_track_changes</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+    <span class="n">enabled</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Toggle Word&#39;s &quot;Track Changes&quot; switch on the document.</span>
+
+<span class="sd">    Inserts ``&lt;w:trackChanges/&gt;`` into ``word/settings.xml`` when</span>
+<span class="sd">    ``enabled=True`` (idempotent) or removes it when ``enabled=False``.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        The Document to mutate in place.</span>
+<span class="sd">    enabled : bool, default True</span>
+<span class="sd">        ``True`` keeps a single ``&lt;w:trackChanges/&gt;`` element present;</span>
+<span class="sd">        ``False`` removes any such elements.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    docx.Document</span>
+<span class="sd">        The same Document object (chainable).</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">settings_el</span> <span class="o">=</span> <span class="n">_settings_element</span><span class="p">(</span><span class="n">document</span><span class="p">)</span>
+    <span class="n">existing</span> <span class="o">=</span> <span class="n">settings_el</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:trackChanges&quot;</span><span class="p">))</span>
+
+    <span class="k">if</span> <span class="n">enabled</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">existing</span><span class="p">:</span>
+            <span class="n">settings_el</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_make_w_element</span><span class="p">(</span><span class="s2">&quot;trackChanges&quot;</span><span class="p">))</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">dup</span> <span class="ow">in</span> <span class="n">existing</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+                <span class="n">settings_el</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">dup</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="n">existing</span><span class="p">:</span>
+            <span class="n">settings_el</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">el</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">document</span></div>
+
+
+
+<div class="viewcode-block" id="is_track_changes_enabled">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.is_track_changes_enabled">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">is_track_changes_enabled</span><span class="p">(</span><span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return True iff ``&lt;w:trackChanges/&gt;`` is present in settings.xml.&quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="k">return</span> <span class="n">_settings_element</span><span class="p">(</span><span class="n">document</span><span class="p">)</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:trackChanges&quot;</span><span class="p">))</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span></div>
+
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># API 2: wrap_as_tracked_insertion</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<div class="viewcode-block" id="wrap_as_tracked_insertion">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.wrap_as_tracked_insertion">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">wrap_as_tracked_insertion</span><span class="p">(</span>
+    <span class="n">paragraph</span><span class="p">:</span> <span class="s2">&quot;Paragraph&quot;</span><span class="p">,</span>
+    <span class="n">runs</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">Any</span><span class="p">],</span>
+    <span class="n">author</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;agent&quot;</span><span class="p">,</span>
+    <span class="n">date</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">w_id</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Wrap the given runs of ``paragraph`` in ``&lt;w:ins&gt;`` revision blocks.</span>
+
+<span class="sd">    Word renders the wrapped content as &quot;inserted by &lt;author&gt;&quot; and</span>
+<span class="sd">    surfaces it as an accept/reject-able revision.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    paragraph : docx.text.paragraph.Paragraph</span>
+<span class="sd">        Paragraph that owns the runs to wrap.</span>
+<span class="sd">    runs : sequence of Run or int</span>
+<span class="sd">        Runs to wrap, by Run object or by 0-based index.</span>
+<span class="sd">    author : str, default &quot;agent&quot;</span>
+<span class="sd">        Recorded in ``w:author``.</span>
+<span class="sd">    date : str, optional</span>
+<span class="sd">        ISO-8601 string for ``w:date``; defaults to ``now(UTC)``.</span>
+<span class="sd">    w_id : int, optional</span>
+<span class="sd">        Explicit revision id; auto-assigned (max+1) when ``None``.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list</span>
+<span class="sd">        Newly created ``&lt;w:ins&gt;`` lxml elements.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">target_runs</span> <span class="o">=</span> <span class="n">_resolve_runs</span><span class="p">(</span><span class="n">paragraph</span><span class="p">,</span> <span class="n">runs</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">target_runs</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+
+    <span class="n">attrs</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">_next_revision_id</span><span class="p">(</span><span class="n">paragraph</span><span class="p">,</span> <span class="n">w_id</span><span class="p">),</span>
+        <span class="s2">&quot;author&quot;</span><span class="p">:</span> <span class="n">author</span><span class="p">,</span>
+        <span class="s2">&quot;date&quot;</span><span class="p">:</span> <span class="n">date</span> <span class="ow">or</span> <span class="n">_now_iso</span><span class="p">(),</span>
+    <span class="p">}</span>
+    <span class="k">return</span> <span class="n">_wrap_runs_in_element</span><span class="p">(</span><span class="n">paragraph</span><span class="p">,</span> <span class="n">target_runs</span><span class="p">,</span> <span class="s2">&quot;ins&quot;</span><span class="p">,</span> <span class="n">attrs</span><span class="p">)</span></div>
+
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># API 3: wrap_as_tracked_deletion</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<div class="viewcode-block" id="wrap_as_tracked_deletion">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.wrap_as_tracked_deletion">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">wrap_as_tracked_deletion</span><span class="p">(</span>
+    <span class="n">paragraph</span><span class="p">:</span> <span class="s2">&quot;Paragraph&quot;</span><span class="p">,</span>
+    <span class="n">runs</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">Any</span><span class="p">],</span>
+    <span class="n">author</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;agent&quot;</span><span class="p">,</span>
+    <span class="n">date</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">w_id</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Wrap the given runs of ``paragraph`` in ``&lt;w:del&gt;`` revision blocks.</span>
+
+<span class="sd">    Each wrapped run&#39;s ``&lt;w:t&gt;`` children are also retagged as</span>
+<span class="sd">    ``&lt;w:delText&gt;`` so Word renders the deletion with strike-through.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    paragraph : docx.text.paragraph.Paragraph</span>
+<span class="sd">        Paragraph that owns the runs to wrap.</span>
+<span class="sd">    runs : sequence of Run or int</span>
+<span class="sd">        Runs to wrap, by Run object or by 0-based index.</span>
+<span class="sd">    author : str, default &quot;agent&quot;</span>
+<span class="sd">        Recorded in ``w:author``.</span>
+<span class="sd">    date : str, optional</span>
+<span class="sd">        ISO-8601 string for ``w:date``; defaults to ``now(UTC)``.</span>
+<span class="sd">    w_id : int, optional</span>
+<span class="sd">        Explicit revision id; auto-assigned (max+1) when ``None``.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list</span>
+<span class="sd">        Newly created ``&lt;w:del&gt;`` lxml elements.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">target_runs</span> <span class="o">=</span> <span class="n">_resolve_runs</span><span class="p">(</span><span class="n">paragraph</span><span class="p">,</span> <span class="n">runs</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">target_runs</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+
+    <span class="n">attrs</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">_next_revision_id</span><span class="p">(</span><span class="n">paragraph</span><span class="p">,</span> <span class="n">w_id</span><span class="p">),</span>
+        <span class="s2">&quot;author&quot;</span><span class="p">:</span> <span class="n">author</span><span class="p">,</span>
+        <span class="s2">&quot;date&quot;</span><span class="p">:</span> <span class="n">date</span> <span class="ow">or</span> <span class="n">_now_iso</span><span class="p">(),</span>
+    <span class="p">}</span>
+    <span class="n">wrappers</span> <span class="o">=</span> <span class="n">_wrap_runs_in_element</span><span class="p">(</span><span class="n">paragraph</span><span class="p">,</span> <span class="n">target_runs</span><span class="p">,</span> <span class="s2">&quot;del&quot;</span><span class="p">,</span> <span class="n">attrs</span><span class="p">)</span>
+
+    <span class="n">t_qn</span> <span class="o">=</span> <span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:t&quot;</span><span class="p">)</span>
+    <span class="n">delText_qn</span> <span class="o">=</span> <span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:delText&quot;</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">wrapper</span> <span class="ow">in</span> <span class="n">wrappers</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">wrapper</span><span class="o">.</span><span class="n">iter</span><span class="p">(</span><span class="n">t_qn</span><span class="p">)):</span>
+            <span class="n">t</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">delText_qn</span>
+    <span class="k">return</span> <span class="n">wrappers</span></div>
+
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># API 4: extract_tracked_changes</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<div class="viewcode-block" id="extract_tracked_changes">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.extract_tracked_changes">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">extract_tracked_changes</span><span class="p">(</span>
+    <span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Return every ``&lt;w:ins&gt;`` / ``&lt;w:del&gt;`` revision as a structured dict.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        The Document to scan.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list[dict]</span>
+<span class="sd">        Each entry is shaped as::</span>
+
+<span class="sd">            {&quot;type&quot;: &quot;insert&quot; | &quot;delete&quot;,</span>
+<span class="sd">             &quot;paragraph_idx&quot;: int,</span>
+<span class="sd">             &quot;author&quot;: str,</span>
+<span class="sd">             &quot;date&quot;: str,</span>
+<span class="sd">             &quot;id&quot;: str,</span>
+<span class="sd">             &quot;text&quot;: str}</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">ins_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">ins&quot;</span>
+    <span class="n">del_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">del&quot;</span>
+    <span class="n">t_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">t&quot;</span>
+    <span class="n">delText_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">delText&quot;</span>
+    <span class="n">id_attr</span> <span class="o">=</span> <span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:id&quot;</span><span class="p">)</span>
+    <span class="n">author_attr</span> <span class="o">=</span> <span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:author&quot;</span><span class="p">)</span>
+    <span class="n">date_attr</span> <span class="o">=</span> <span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:date&quot;</span><span class="p">)</span>
+
+    <span class="n">results</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">dict</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">pi</span><span class="p">,</span> <span class="n">para</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">document</span><span class="o">.</span><span class="n">paragraphs</span><span class="p">):</span>
+        <span class="k">for</span> <span class="n">elem</span> <span class="ow">in</span> <span class="n">para</span><span class="o">.</span><span class="n">_p</span><span class="o">.</span><span class="n">iter</span><span class="p">():</span>
+            <span class="k">if</span> <span class="n">elem</span><span class="o">.</span><span class="n">tag</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">(</span><span class="n">ins_tag</span><span class="p">,</span> <span class="n">del_tag</span><span class="p">):</span>
+                <span class="k">continue</span>
+            <span class="n">texts</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="n">elem</span><span class="o">.</span><span class="n">iter</span><span class="p">():</span>
+                <span class="k">if</span> <span class="n">t</span><span class="o">.</span><span class="n">tag</span> <span class="ow">in</span> <span class="p">(</span><span class="n">t_tag</span><span class="p">,</span> <span class="n">delText_tag</span><span class="p">)</span> <span class="ow">and</span> <span class="n">t</span><span class="o">.</span><span class="n">text</span><span class="p">:</span>
+                    <span class="n">texts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">t</span><span class="o">.</span><span class="n">text</span><span class="p">)</span>
+            <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span>
+                    <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;insert&quot;</span> <span class="k">if</span> <span class="n">elem</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="n">ins_tag</span> <span class="k">else</span> <span class="s2">&quot;delete&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;paragraph_idx&quot;</span><span class="p">:</span> <span class="n">pi</span><span class="p">,</span>
+                    <span class="s2">&quot;author&quot;</span><span class="p">:</span> <span class="n">elem</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">author_attr</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">),</span>
+                    <span class="s2">&quot;date&quot;</span><span class="p">:</span> <span class="n">elem</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">date_attr</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">),</span>
+                    <span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="n">elem</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">id_attr</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">),</span>
+                    <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">texts</span><span class="p">),</span>
+                <span class="p">}</span>
+            <span class="p">)</span>
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<span class="c1"># ---------------------------------------------------------------------------</span>
+<span class="c1"># API 5: accept_all / reject_all</span>
+<span class="c1"># ---------------------------------------------------------------------------</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_unwrap_element</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Replace ``elem`` in its parent with its own children, in order.&quot;&quot;&quot;</span>
+    <span class="n">parent</span> <span class="o">=</span> <span class="n">elem</span><span class="o">.</span><span class="n">getparent</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">parent</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">return</span>
+    <span class="n">idx</span> <span class="o">=</span> <span class="n">parent</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">offset</span><span class="p">,</span> <span class="n">child</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">elem</span><span class="p">)):</span>
+        <span class="n">elem</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">child</span><span class="p">)</span>
+        <span class="n">parent</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="n">idx</span> <span class="o">+</span> <span class="n">offset</span><span class="p">,</span> <span class="n">child</span><span class="p">)</span>
+    <span class="n">parent</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span>
+
+
+<div class="viewcode-block" id="accept_all_tracked_changes">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.accept_all_tracked_changes">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">accept_all_tracked_changes</span><span class="p">(</span><span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Accept all tracked changes — equivalent to Word&#39;s &quot;Accept All&quot;.</span>
+
+<span class="sd">    ``&lt;w:ins&gt;`` wrappers are unwrapped (content remains); ``&lt;w:del&gt;``</span>
+<span class="sd">    wrappers and their contents are removed.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        The Document to mutate in place.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    docx.Document</span>
+<span class="sd">        The same Document, mutated.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">body</span> <span class="o">=</span> <span class="n">document</span><span class="o">.</span><span class="n">element</span><span class="o">.</span><span class="n">body</span>
+    <span class="n">ins_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">ins&quot;</span>
+    <span class="n">del_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">del&quot;</span>
+
+    <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="p">[</span><span class="n">e</span> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">body</span><span class="o">.</span><span class="n">iter</span><span class="p">()</span> <span class="k">if</span> <span class="n">e</span><span class="o">.</span><span class="n">tag</span> <span class="ow">in</span> <span class="p">(</span><span class="n">ins_tag</span><span class="p">,</span> <span class="n">del_tag</span><span class="p">)]:</span>
+        <span class="n">parent</span> <span class="o">=</span> <span class="n">el</span><span class="o">.</span><span class="n">getparent</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">parent</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="k">if</span> <span class="n">el</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="n">ins_tag</span><span class="p">:</span>
+            <span class="n">_unwrap_element</span><span class="p">(</span><span class="n">el</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">parent</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">el</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">document</span></div>
+
+
+
+<div class="viewcode-block" id="reject_all_tracked_changes">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.reject_all_tracked_changes">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">reject_all_tracked_changes</span><span class="p">(</span><span class="n">document</span><span class="p">:</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="s2">&quot;DocxDocument&quot;</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Reject all tracked changes — equivalent to Word&#39;s &quot;Reject All&quot;.</span>
+
+<span class="sd">    ``&lt;w:ins&gt;`` wrappers and contents are removed; ``&lt;w:del&gt;`` wrappers</span>
+<span class="sd">    are unwrapped and their ``&lt;w:delText&gt;`` children retagged back to</span>
+<span class="sd">    ``&lt;w:t&gt;`` so the original text is restored.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    document : docx.Document</span>
+<span class="sd">        The Document to mutate in place.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    docx.Document</span>
+<span class="sd">        The same Document, mutated.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">_ensure_docx_available</span><span class="p">()</span>
+    <span class="n">body</span> <span class="o">=</span> <span class="n">document</span><span class="o">.</span><span class="n">element</span><span class="o">.</span><span class="n">body</span>
+    <span class="n">ins_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">ins&quot;</span>
+    <span class="n">del_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">del&quot;</span>
+    <span class="n">t_tag</span> <span class="o">=</span> <span class="n">qn</span><span class="p">(</span><span class="s2">&quot;w:t&quot;</span><span class="p">)</span>
+    <span class="n">delText_tag</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">{{</span><span class="si">{</span><span class="n">_W_NS</span><span class="si">}</span><span class="se">}}</span><span class="s2">delText&quot;</span>
+
+    <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="p">[</span><span class="n">e</span> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">body</span><span class="o">.</span><span class="n">iter</span><span class="p">()</span> <span class="k">if</span> <span class="n">e</span><span class="o">.</span><span class="n">tag</span> <span class="ow">in</span> <span class="p">(</span><span class="n">ins_tag</span><span class="p">,</span> <span class="n">del_tag</span><span class="p">)]:</span>
+        <span class="n">parent</span> <span class="o">=</span> <span class="n">el</span><span class="o">.</span><span class="n">getparent</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">parent</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="k">if</span> <span class="n">el</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="n">ins_tag</span><span class="p">:</span>
+            <span class="n">parent</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">el</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">dt</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">el</span><span class="o">.</span><span class="n">iter</span><span class="p">(</span><span class="n">delText_tag</span><span class="p">)):</span>
+                <span class="n">dt</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">t_tag</span>
+            <span class="n">_unwrap_element</span><span class="p">(</span><span class="n">el</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">document</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;enable_track_changes&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;is_track_changes_enabled&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;wrap_as_tracked_insertion&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;wrap_as_tracked_deletion&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;extract_tracked_changes&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;accept_all_tracked_changes&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;reject_all_tracked_changes&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_msword/utils.html b/src/scitex/_sphinx_html/_modules/scitex_msword/utils.html
new file mode 100644
index 000000000..8195ec24c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_msword/utils.html
@@ -0,0 +1,986 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_msword.html">scitex_msword</a></li>
+      <li class="breadcrumb-item active">scitex_msword.utils</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_msword.utils</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2025-12-11 16:45:00</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/msword/utils.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Utility functions for processing MS Word documents.</span>
+
+<span class="sd">These functions can be used as post_import_hooks or called directly</span>
+<span class="sd">to process document structures.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span>
+
+
+<div class="viewcode-block" id="link_captions_to_images">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.link_captions_to_images">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">link_captions_to_images</span><span class="p">(</span><span class="n">doc</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Link figure captions to images by matching order.</span>
+
+<span class="sd">    This function pairs figure captions with images based on their</span>
+<span class="sd">    sequential order in the document. Each figure caption is assigned</span>
+<span class="sd">    an `image_hash` that corresponds to the image at the same position.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    doc : dict</span>
+<span class="sd">        SciTeX writer document with &#39;blocks&#39; and &#39;images&#39; keys.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        The same document with image_hash added to figure captions.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword import load_docx</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword.utils import link_captions_to_images</span>
+<span class="sd">    &gt;&gt;&gt; doc = load_docx(&quot;manuscript.docx&quot;)</span>
+<span class="sd">    &gt;&gt;&gt; doc = link_captions_to_images(doc)</span>
+<span class="sd">    &gt;&gt;&gt; # Now captions have image_hash for LaTeX export</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">blocks</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;blocks&quot;</span><span class="p">,</span> <span class="p">[])</span>
+    <span class="n">images</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;images&quot;</span><span class="p">,</span> <span class="p">[])</span>
+
+    <span class="c1"># Find all figure captions</span>
+    <span class="n">figure_captions</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="n">b</span>
+        <span class="k">for</span> <span class="n">b</span> <span class="ow">in</span> <span class="n">blocks</span>
+        <span class="k">if</span> <span class="n">b</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;caption&quot;</span> <span class="ow">and</span> <span class="n">b</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;caption_type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;figure&quot;</span>
+    <span class="p">]</span>
+
+    <span class="c1"># Link by order (figure 1 -&gt; image 0, figure 2 -&gt; image 1, etc.)</span>
+    <span class="k">for</span> <span class="n">caption</span> <span class="ow">in</span> <span class="n">figure_captions</span><span class="p">:</span>
+        <span class="n">fig_num</span> <span class="o">=</span> <span class="n">caption</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;number&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">fig_num</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fig_num</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+            <span class="c1"># Figure numbers are typically 1-indexed</span>
+            <span class="n">img_idx</span> <span class="o">=</span> <span class="n">fig_num</span> <span class="o">-</span> <span class="mi">1</span>
+            <span class="k">if</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">img_idx</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">images</span><span class="p">):</span>
+                <span class="n">caption</span><span class="p">[</span><span class="s2">&quot;image_hash&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">images</span><span class="p">[</span><span class="n">img_idx</span><span class="p">]</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;hash&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">doc</span></div>
+
+
+
+<div class="viewcode-block" id="link_captions_to_images_by_proximity">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.link_captions_to_images_by_proximity">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">link_captions_to_images_by_proximity</span><span class="p">(</span><span class="n">doc</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Link figure captions to images by document proximity.</span>
+
+<span class="sd">    This function uses the image blocks (type=&quot;image&quot;) that are inserted</span>
+<span class="sd">    at their actual positions in the document body. It finds the nearest</span>
+<span class="sd">    unlinked image block to each figure caption.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    doc : dict</span>
+<span class="sd">        SciTeX writer document.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Document with image_hash added to captions.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">blocks</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;blocks&quot;</span><span class="p">,</span> <span class="p">[])</span>
+
+    <span class="c1"># Collect image blocks and figure captions with their indices</span>
+    <span class="n">image_blocks</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">figure_captions</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">block</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">blocks</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;image&quot;</span><span class="p">:</span>
+            <span class="n">image_blocks</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">block</span><span class="p">))</span>
+        <span class="k">elif</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;caption&quot;</span> <span class="ow">and</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;caption_type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;figure&quot;</span><span class="p">:</span>
+            <span class="n">figure_captions</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">block</span><span class="p">))</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">image_blocks</span><span class="p">:</span>
+        <span class="c1"># Fallback to old behavior using doc[&quot;images&quot;] list</span>
+        <span class="n">images</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;images&quot;</span><span class="p">,</span> <span class="p">[])</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">images</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">doc</span>
+        <span class="n">image_hashes</span> <span class="o">=</span> <span class="p">[</span><span class="n">img</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;hash&quot;</span><span class="p">)</span> <span class="k">for</span> <span class="n">img</span> <span class="ow">in</span> <span class="n">images</span><span class="p">]</span>
+        <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="n">_</span><span class="p">,</span> <span class="n">caption</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">figure_captions</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">idx</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">image_hashes</span><span class="p">):</span>
+                <span class="n">caption</span><span class="p">[</span><span class="s2">&quot;image_hash&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">image_hashes</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
+        <span class="k">return</span> <span class="n">doc</span>
+
+    <span class="n">used_images</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+
+    <span class="c1"># For each caption, find the nearest preceding image block</span>
+    <span class="k">for</span> <span class="n">cap_idx</span><span class="p">,</span> <span class="n">caption</span> <span class="ow">in</span> <span class="n">figure_captions</span><span class="p">:</span>
+        <span class="n">best_img_idx</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="n">best_img_hash</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="n">best_distance</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="s2">&quot;inf&quot;</span><span class="p">)</span>
+
+        <span class="k">for</span> <span class="n">img_idx</span><span class="p">,</span> <span class="n">img_block</span> <span class="ow">in</span> <span class="n">image_blocks</span><span class="p">:</span>
+            <span class="n">img_hash</span> <span class="o">=</span> <span class="n">img_block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;image_hash&quot;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">img_hash</span> <span class="ow">in</span> <span class="n">used_images</span><span class="p">:</span>
+                <span class="k">continue</span>
+
+            <span class="c1"># Prefer images that come before the caption (typical layout)</span>
+            <span class="n">distance</span> <span class="o">=</span> <span class="n">cap_idx</span> <span class="o">-</span> <span class="n">img_idx</span>
+            <span class="k">if</span> <span class="n">distance</span> <span class="o">&gt;=</span> <span class="mi">0</span> <span class="ow">and</span> <span class="n">distance</span> <span class="o">&lt;</span> <span class="n">best_distance</span><span class="p">:</span>
+                <span class="n">best_distance</span> <span class="o">=</span> <span class="n">distance</span>
+                <span class="n">best_img_idx</span> <span class="o">=</span> <span class="n">img_idx</span>
+                <span class="n">best_img_hash</span> <span class="o">=</span> <span class="n">img_hash</span>
+
+        <span class="c1"># If no preceding image, try following images</span>
+        <span class="k">if</span> <span class="n">best_img_hash</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">img_idx</span><span class="p">,</span> <span class="n">img_block</span> <span class="ow">in</span> <span class="n">image_blocks</span><span class="p">:</span>
+                <span class="n">img_hash</span> <span class="o">=</span> <span class="n">img_block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;image_hash&quot;</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">img_hash</span> <span class="ow">in</span> <span class="n">used_images</span><span class="p">:</span>
+                    <span class="k">continue</span>
+
+                <span class="n">distance</span> <span class="o">=</span> <span class="nb">abs</span><span class="p">(</span><span class="n">cap_idx</span> <span class="o">-</span> <span class="n">img_idx</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">distance</span> <span class="o">&lt;</span> <span class="n">best_distance</span><span class="p">:</span>
+                    <span class="n">best_distance</span> <span class="o">=</span> <span class="n">distance</span>
+                    <span class="n">best_img_idx</span> <span class="o">=</span> <span class="n">img_idx</span>
+                    <span class="n">best_img_hash</span> <span class="o">=</span> <span class="n">img_hash</span>
+
+        <span class="k">if</span> <span class="n">best_img_hash</span><span class="p">:</span>
+            <span class="n">caption</span><span class="p">[</span><span class="s2">&quot;image_hash&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">best_img_hash</span>
+            <span class="n">used_images</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">best_img_hash</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">doc</span></div>
+
+
+
+<div class="viewcode-block" id="normalize_section_headings">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.normalize_section_headings">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">normalize_section_headings</span><span class="p">(</span><span class="n">doc</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Normalize section headings for consistency.</span>
+
+<span class="sd">    Converts common section titles to standard academic format:</span>
+<span class="sd">    - &quot;intro&quot; -&gt; &quot;Introduction&quot;</span>
+<span class="sd">    - &quot;method&quot; -&gt; &quot;Methods&quot;</span>
+<span class="sd">    - etc.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    doc : dict</span>
+<span class="sd">        SciTeX writer document.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Document with normalized headings.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">blocks</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;blocks&quot;</span><span class="p">,</span> <span class="p">[])</span>
+
+    <span class="c1"># Common normalizations</span>
+    <span class="n">normalizations</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;intro&quot;</span><span class="p">:</span> <span class="s2">&quot;Introduction&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;introduction&quot;</span><span class="p">:</span> <span class="s2">&quot;Introduction&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;method&quot;</span><span class="p">:</span> <span class="s2">&quot;Methods&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;methods&quot;</span><span class="p">:</span> <span class="s2">&quot;Methods&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;materials and methods&quot;</span><span class="p">:</span> <span class="s2">&quot;Materials and Methods&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;result&quot;</span><span class="p">:</span> <span class="s2">&quot;Results&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;results&quot;</span><span class="p">:</span> <span class="s2">&quot;Results&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;discussion&quot;</span><span class="p">:</span> <span class="s2">&quot;Discussion&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;conclusion&quot;</span><span class="p">:</span> <span class="s2">&quot;Conclusions&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;conclusions&quot;</span><span class="p">:</span> <span class="s2">&quot;Conclusions&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;acknowledgement&quot;</span><span class="p">:</span> <span class="s2">&quot;Acknowledgements&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;acknowledgements&quot;</span><span class="p">:</span> <span class="s2">&quot;Acknowledgements&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;reference&quot;</span><span class="p">:</span> <span class="s2">&quot;References&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;references&quot;</span><span class="p">:</span> <span class="s2">&quot;References&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;bibliography&quot;</span><span class="p">:</span> <span class="s2">&quot;References&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+
+    <span class="k">for</span> <span class="n">block</span> <span class="ow">in</span> <span class="n">blocks</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;heading&quot;</span> <span class="ow">and</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;level&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="n">text</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
+            <span class="k">if</span> <span class="n">text</span> <span class="ow">in</span> <span class="n">normalizations</span><span class="p">:</span>
+                <span class="n">block</span><span class="p">[</span><span class="s2">&quot;text&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">normalizations</span><span class="p">[</span><span class="n">text</span><span class="p">]</span>
+
+    <span class="k">return</span> <span class="n">doc</span></div>
+
+
+
+<div class="viewcode-block" id="validate_document">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.validate_document">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">validate_document</span><span class="p">(</span><span class="n">doc</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Validate document structure and add warnings.</span>
+
+<span class="sd">    Checks for common issues:</span>
+<span class="sd">    - Missing required sections</span>
+<span class="sd">    - Unmatched caption numbers</span>
+<span class="sd">    - Empty references section</span>
+<span class="sd">    - Duplicate figure numbers</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    doc : dict</span>
+<span class="sd">        SciTeX writer document.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        Document with warnings added.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">blocks</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;blocks&quot;</span><span class="p">,</span> <span class="p">[])</span>
+    <span class="n">warnings</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;warnings&quot;</span><span class="p">,</span> <span class="p">[])</span>
+
+    <span class="c1"># Check for required sections</span>
+    <span class="n">headings</span> <span class="o">=</span> <span class="p">[</span><span class="n">b</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="k">for</span> <span class="n">b</span> <span class="ow">in</span> <span class="n">blocks</span> <span class="k">if</span> <span class="n">b</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;heading&quot;</span><span class="p">]</span>
+
+    <span class="n">required_sections</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="s2">&quot;introduction&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;methods&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;results&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;discussion&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;references&quot;</span><span class="p">,</span>
+    <span class="p">]</span>
+    <span class="k">for</span> <span class="n">section</span> <span class="ow">in</span> <span class="n">required_sections</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">any</span><span class="p">(</span><span class="n">section</span> <span class="ow">in</span> <span class="n">h</span> <span class="k">for</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">headings</span><span class="p">):</span>
+            <span class="n">warnings</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Missing section: </span><span class="si">{</span><span class="n">section</span><span class="o">.</span><span class="n">title</span><span class="p">()</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Check for duplicate figure numbers</span>
+    <span class="n">figure_numbers</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="n">b</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;number&quot;</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">b</span> <span class="ow">in</span> <span class="n">blocks</span>
+        <span class="k">if</span> <span class="n">b</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;caption&quot;</span> <span class="ow">and</span> <span class="n">b</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;caption_type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;figure&quot;</span>
+    <span class="p">]</span>
+    <span class="n">seen</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">num</span> <span class="ow">in</span> <span class="n">figure_numbers</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">num</span> <span class="ow">in</span> <span class="n">seen</span><span class="p">:</span>
+            <span class="n">warnings</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Duplicate figure number: </span><span class="si">{</span><span class="n">num</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="n">seen</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">num</span><span class="p">)</span>
+
+    <span class="c1"># Check for missing references</span>
+    <span class="n">references</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;references&quot;</span><span class="p">,</span> <span class="p">[])</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">references</span><span class="p">:</span>
+        <span class="n">ref_blocks</span> <span class="o">=</span> <span class="p">[</span><span class="n">b</span> <span class="k">for</span> <span class="n">b</span> <span class="ow">in</span> <span class="n">blocks</span> <span class="k">if</span> <span class="n">b</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;reference-paragraph&quot;</span><span class="p">]</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">ref_blocks</span><span class="p">:</span>
+            <span class="n">warnings</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;No references found in document&quot;</span><span class="p">)</span>
+
+    <span class="n">doc</span><span class="p">[</span><span class="s2">&quot;warnings&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">warnings</span>
+    <span class="k">return</span> <span class="n">doc</span></div>
+
+
+
+<div class="viewcode-block" id="create_post_import_hook">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.create_post_import_hook">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">create_post_import_hook</span><span class="p">(</span><span class="o">*</span><span class="n">functions</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Create a composite post_import_hook from multiple functions.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    *functions : callable</span>
+<span class="sd">        Functions to apply in sequence.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    callable</span>
+<span class="sd">        A single hook that applies all functions.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex.msword.utils import (</span>
+<span class="sd">    ...     link_captions_to_images,</span>
+<span class="sd">    ...     normalize_section_headings,</span>
+<span class="sd">    ...     create_post_import_hook,</span>
+<span class="sd">    ... )</span>
+<span class="sd">    &gt;&gt;&gt; hook = create_post_import_hook(</span>
+<span class="sd">    ...     link_captions_to_images,</span>
+<span class="sd">    ...     normalize_section_headings,</span>
+<span class="sd">    ... )</span>
+<span class="sd">    &gt;&gt;&gt; # Use with custom profile</span>
+<span class="sd">    &gt;&gt;&gt; profile.post_import_hooks = [hook]</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">composite_hook</span><span class="p">(</span><span class="n">doc</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+        <span class="k">for</span> <span class="n">func</span> <span class="ow">in</span> <span class="n">functions</span><span class="p">:</span>
+            <span class="n">doc</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">doc</span>
+
+    <span class="k">return</span> <span class="n">composite_hook</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;link_captions_to_images&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;link_captions_to_images_by_proximity&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;normalize_section_headings&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;validate_document&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;create_post_import_hook&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_msword/writer.html b/src/scitex/_sphinx_html/_modules/scitex_msword/writer.html
new file mode 100644
index 000000000..958c6b9ef
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_msword/writer.html
@@ -0,0 +1,1043 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_msword.writer &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
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+</head>
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+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+            SciTeX
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_msword.html">scitex_msword</a></li>
+      <li class="breadcrumb-item active">scitex_msword.writer</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_msword.writer</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: 2025-12-11 15:15:00</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/msword/writer.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">SciTeX writer document -&gt; DOCX converter.</span>
+
+<span class="sd">This module exports SciTeX documents to MS Word .docx files,</span>
+<span class="sd">applying journal-specific styles and formatting.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.profiles</span><span class="w"> </span><span class="kn">import</span> <span class="n">BaseWordProfile</span>
+
+<span class="c1"># Lazy import for python-docx</span>
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">docx</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.document</span><span class="w"> </span><span class="kn">import</span> <span class="n">Document</span> <span class="k">as</span> <span class="n">DocxDocument</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.enum.style</span><span class="w"> </span><span class="kn">import</span> <span class="n">WD_STYLE_TYPE</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.enum.text</span><span class="w"> </span><span class="kn">import</span> <span class="n">WD_ALIGN_PARAGRAPH</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">docx.shared</span><span class="w"> </span><span class="kn">import</span> <span class="n">Cm</span><span class="p">,</span> <span class="n">Inches</span><span class="p">,</span> <span class="n">Pt</span>
+
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">True</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="k">except</span> <span class="ne">ImportError</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+    <span class="n">DOCX_AVAILABLE</span> <span class="o">=</span> <span class="kc">False</span>
+    <span class="n">_DOCX_IMPORT_ERROR</span> <span class="o">=</span> <span class="n">exc</span>
+
+
+<div class="viewcode-block" id="WordWriter">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.WordWriter">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">WordWriter</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Export a SciTeX writer document to a DOCX file.</span>
+
+<span class="sd">    This writer handles:</span>
+<span class="sd">    - Section headings with proper styles</span>
+<span class="sd">    - Paragraphs with formatting</span>
+<span class="sd">    - Figure and table captions</span>
+<span class="sd">    - References section</span>
+<span class="sd">    - Image embedding</span>
+<span class="sd">    - Journal-specific template application</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="WordWriter.__init__">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.WordWriter.__init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">profile</span><span class="p">:</span> <span class="n">BaseWordProfile</span><span class="p">,</span>
+        <span class="n">template_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        profile : BaseWordProfile</span>
+<span class="sd">            Mapping from writer structures to Word styles.</span>
+<span class="sd">        template_path : Path | None</span>
+<span class="sd">            Optional path to a Word template (.dotx/.docx) to use as base.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">DOCX_AVAILABLE</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+                <span class="s2">&quot;python-docx is required for scitex.msword.WordWriter. &quot;</span>
+                <span class="s2">&quot;Install it via `pip install python-docx`.&quot;</span>
+            <span class="p">)</span> <span class="kn">from</span><span class="w"> </span><span class="nn">_DOCX_IMPORT_ERROR</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">profile</span> <span class="o">=</span> <span class="n">profile</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">template_path</span> <span class="o">=</span> <span class="n">template_path</span></div>
+
+
+<div class="viewcode-block" id="WordWriter.write">
+<a class="viewcode-back" href="../../source/api/msword.html#scitex.msword.WordWriter.write">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">write</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">writer_doc</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">|</span> <span class="n">Any</span><span class="p">,</span>
+        <span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Write a SciTeX writer document to a DOCX file.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        writer_doc : dict | Any</span>
+<span class="sd">            Writer document or intermediate structure.</span>
+<span class="sd">        path : Path</span>
+<span class="sd">            Output path for the DOCX file.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Create document (from template if specified)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">template_path</span> <span class="ow">and</span> <span class="n">Path</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_path</span><span class="p">)</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">doc</span> <span class="o">=</span> <span class="n">docx</span><span class="o">.</span><span class="n">Document</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_path</span><span class="p">))</span>
+            <span class="c1"># Clear existing content but keep styles</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_clear_document_content</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">doc</span> <span class="o">=</span> <span class="n">docx</span><span class="o">.</span><span class="n">Document</span><span class="p">()</span>
+
+        <span class="c1"># Run pre-export hooks</span>
+        <span class="k">for</span> <span class="n">hook</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">pre_export_hooks</span><span class="p">:</span>
+            <span class="n">writer_doc</span> <span class="o">=</span> <span class="n">hook</span><span class="p">(</span><span class="n">writer_doc</span><span class="p">)</span>
+
+        <span class="c1"># Extract blocks from writer_doc</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">writer_doc</span><span class="p">,</span> <span class="nb">dict</span><span class="p">)</span> <span class="ow">and</span> <span class="s2">&quot;blocks&quot;</span> <span class="ow">in</span> <span class="n">writer_doc</span><span class="p">:</span>
+            <span class="n">blocks</span> <span class="o">=</span> <span class="n">writer_doc</span><span class="p">[</span><span class="s2">&quot;blocks&quot;</span><span class="p">]</span>
+            <span class="n">images</span> <span class="o">=</span> <span class="n">writer_doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;images&quot;</span><span class="p">,</span> <span class="p">[])</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">blocks</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">writer_doc</span><span class="p">)</span>
+            <span class="n">images</span> <span class="o">=</span> <span class="p">[]</span>
+
+        <span class="c1"># Build image lookup by hash</span>
+        <span class="n">image_lookup</span> <span class="o">=</span> <span class="p">{</span><span class="n">img</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;hash&quot;</span><span class="p">):</span> <span class="n">img</span> <span class="k">for</span> <span class="n">img</span> <span class="ow">in</span> <span class="n">images</span> <span class="k">if</span> <span class="s2">&quot;hash&quot;</span> <span class="ow">in</span> <span class="n">img</span><span class="p">}</span>
+
+        <span class="c1"># Process each block</span>
+        <span class="k">for</span> <span class="n">block</span> <span class="ow">in</span> <span class="n">blocks</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_add_block</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">block</span><span class="p">,</span> <span class="n">image_lookup</span><span class="p">)</span>
+
+        <span class="c1"># Apply double-anonymous processing if needed</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">double_anonymous</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_apply_double_anonymous</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">writer_doc</span><span class="p">)</span>
+
+        <span class="c1"># Save document</span>
+        <span class="n">doc</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">))</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_clear_document_content</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Clear document content while preserving styles.&quot;&quot;&quot;</span>
+        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">doc</span><span class="o">.</span><span class="n">element</span><span class="o">.</span><span class="n">body</span><span class="p">[:]:</span>
+            <span class="n">doc</span><span class="o">.</span><span class="n">element</span><span class="o">.</span><span class="n">body</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_add_block</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">block</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+        <span class="n">image_lookup</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add a single block to the document.&quot;&quot;&quot;</span>
+        <span class="n">btype</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">,</span> <span class="s2">&quot;paragraph&quot;</span><span class="p">)</span>
+        <span class="n">text</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">text</span> <span class="ow">and</span> <span class="n">btype</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;table&quot;</span><span class="p">,</span> <span class="s2">&quot;image&quot;</span><span class="p">):</span>
+            <span class="k">return</span>
+
+        <span class="k">if</span> <span class="n">btype</span> <span class="o">==</span> <span class="s2">&quot;heading&quot;</span><span class="p">:</span>
+            <span class="n">level</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;level&quot;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_add_heading</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">level</span><span class="p">)</span>
+
+        <span class="k">elif</span> <span class="n">btype</span> <span class="o">==</span> <span class="s2">&quot;caption&quot;</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_add_caption</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">block</span><span class="p">)</span>
+
+        <span class="k">elif</span> <span class="n">btype</span> <span class="o">==</span> <span class="s2">&quot;reference-paragraph&quot;</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_add_reference</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">block</span><span class="p">)</span>
+
+        <span class="k">elif</span> <span class="n">btype</span> <span class="o">==</span> <span class="s2">&quot;table&quot;</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_add_table</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">block</span><span class="p">)</span>
+
+        <span class="k">elif</span> <span class="n">btype</span> <span class="o">==</span> <span class="s2">&quot;image&quot;</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_add_image</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">block</span><span class="p">,</span> <span class="n">image_lookup</span><span class="p">)</span>
+
+        <span class="k">elif</span> <span class="n">btype</span> <span class="o">==</span> <span class="s2">&quot;list-item&quot;</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_add_list_item</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">block</span><span class="p">)</span>
+
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># Default: paragraph</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_add_paragraph</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">text</span><span class="p">,</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;runs&quot;</span><span class="p">))</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_add_heading</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">level</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add a heading paragraph at the given logical level.&quot;&quot;&quot;</span>
+        <span class="n">style_name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">heading_styles</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">style_name</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_style_exists</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">style_name</span><span class="p">):</span>
+            <span class="n">p</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">add_paragraph</span><span class="p">(</span><span class="n">text</span><span class="p">)</span>
+            <span class="n">p</span><span class="o">.</span><span class="n">style</span> <span class="o">=</span> <span class="n">style_name</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># Fallback to built-in heading</span>
+            <span class="n">doc</span><span class="o">.</span><span class="n">add_heading</span><span class="p">(</span><span class="n">text</span><span class="p">,</span> <span class="n">level</span><span class="o">=</span><span class="nb">min</span><span class="p">(</span><span class="n">level</span><span class="p">,</span> <span class="mi">9</span><span class="p">))</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_add_paragraph</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">text</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+        <span class="n">runs</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add a paragraph with optional formatted runs.&quot;&quot;&quot;</span>
+        <span class="n">p</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">add_paragraph</span><span class="p">()</span>
+
+        <span class="k">if</span> <span class="n">runs</span><span class="p">:</span>
+            <span class="c1"># Add formatted runs</span>
+            <span class="k">for</span> <span class="n">run_data</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">:</span>
+                <span class="n">run</span> <span class="o">=</span> <span class="n">p</span><span class="o">.</span><span class="n">add_run</span><span class="p">(</span><span class="n">run_data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">))</span>
+                <span class="k">if</span> <span class="n">run_data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;bold&quot;</span><span class="p">):</span>
+                    <span class="n">run</span><span class="o">.</span><span class="n">bold</span> <span class="o">=</span> <span class="kc">True</span>
+                <span class="k">if</span> <span class="n">run_data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;italic&quot;</span><span class="p">):</span>
+                    <span class="n">run</span><span class="o">.</span><span class="n">italic</span> <span class="o">=</span> <span class="kc">True</span>
+                <span class="k">if</span> <span class="n">run_data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;underline&quot;</span><span class="p">):</span>
+                    <span class="n">run</span><span class="o">.</span><span class="n">underline</span> <span class="o">=</span> <span class="kc">True</span>
+                <span class="k">if</span> <span class="n">run_data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;font_size&quot;</span><span class="p">):</span>
+                    <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">size</span> <span class="o">=</span> <span class="n">Pt</span><span class="p">(</span><span class="n">run_data</span><span class="p">[</span><span class="s2">&quot;font_size&quot;</span><span class="p">])</span>
+                <span class="k">if</span> <span class="n">run_data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;font_name&quot;</span><span class="p">):</span>
+                    <span class="n">run</span><span class="o">.</span><span class="n">font</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">run_data</span><span class="p">[</span><span class="s2">&quot;font_name&quot;</span><span class="p">]</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">p</span><span class="o">.</span><span class="n">add_run</span><span class="p">(</span><span class="n">text</span><span class="p">)</span>
+
+        <span class="c1"># Apply normal style</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_style_exists</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">normal_style</span><span class="p">):</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">p</span><span class="o">.</span><span class="n">style</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">normal_style</span>
+            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+                <span class="k">pass</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_add_caption</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">block</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add a figure or table caption.&quot;&quot;&quot;</span>
+        <span class="n">caption_type</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;caption_type&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="n">number</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;number&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="n">caption_text</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;caption_text&quot;</span><span class="p">,</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">))</span>
+
+        <span class="c1"># Build caption text</span>
+        <span class="k">if</span> <span class="n">caption_type</span> <span class="o">==</span> <span class="s2">&quot;figure&quot;</span> <span class="ow">and</span> <span class="n">number</span><span class="p">:</span>
+            <span class="n">full_text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;Figure </span><span class="si">{</span><span class="n">number</span><span class="si">}</span><span class="s2">. </span><span class="si">{</span><span class="n">caption_text</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">elif</span> <span class="n">caption_type</span> <span class="o">==</span> <span class="s2">&quot;table&quot;</span> <span class="ow">and</span> <span class="n">number</span><span class="p">:</span>
+            <span class="n">full_text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;Table </span><span class="si">{</span><span class="n">number</span><span class="si">}</span><span class="s2">. </span><span class="si">{</span><span class="n">caption_text</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">full_text</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="n">caption_text</span><span class="p">)</span>
+
+        <span class="n">p</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">add_paragraph</span><span class="p">(</span><span class="n">full_text</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_style_exists</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">caption_style</span><span class="p">):</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">p</span><span class="o">.</span><span class="n">style</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">caption_style</span>
+            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+                <span class="k">pass</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_add_reference</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">block</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add a reference entry.&quot;&quot;&quot;</span>
+        <span class="n">ref_number</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;ref_number&quot;</span><span class="p">)</span>
+        <span class="n">ref_text</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;ref_text&quot;</span><span class="p">,</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">))</span>
+
+        <span class="k">if</span> <span class="n">ref_number</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">full_text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;[</span><span class="si">{</span><span class="n">ref_number</span><span class="si">}</span><span class="s2">] </span><span class="si">{</span><span class="n">ref_text</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">full_text</span> <span class="o">=</span> <span class="n">ref_text</span>
+
+        <span class="n">p</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">add_paragraph</span><span class="p">(</span><span class="n">full_text</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_style_exists</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">normal_style</span><span class="p">):</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">p</span><span class="o">.</span><span class="n">style</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">normal_style</span>
+            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+                <span class="k">pass</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_add_table</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">block</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add a table.&quot;&quot;&quot;</span>
+        <span class="n">rows</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;rows&quot;</span><span class="p">,</span> <span class="p">[])</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">rows</span><span class="p">:</span>
+            <span class="k">return</span>
+
+        <span class="n">num_rows</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">rows</span><span class="p">)</span>
+        <span class="n">num_cols</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">rows</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="k">if</span> <span class="n">rows</span> <span class="k">else</span> <span class="mi">0</span>
+
+        <span class="n">table</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">add_table</span><span class="p">(</span><span class="n">rows</span><span class="o">=</span><span class="n">num_rows</span><span class="p">,</span> <span class="n">cols</span><span class="o">=</span><span class="n">num_cols</span><span class="p">)</span>
+        <span class="n">table</span><span class="o">.</span><span class="n">style</span> <span class="o">=</span> <span class="s2">&quot;Table Grid&quot;</span>
+
+        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">row_data</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">rows</span><span class="p">):</span>
+            <span class="n">row</span> <span class="o">=</span> <span class="n">table</span><span class="o">.</span><span class="n">rows</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+            <span class="k">for</span> <span class="n">j</span><span class="p">,</span> <span class="n">cell_text</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">row_data</span><span class="p">):</span>
+                <span class="k">if</span> <span class="n">j</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">cells</span><span class="p">):</span>
+                    <span class="n">row</span><span class="o">.</span><span class="n">cells</span><span class="p">[</span><span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">text</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">cell_text</span><span class="p">)</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_add_image</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">block</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+        <span class="n">image_lookup</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add an image.&quot;&quot;&quot;</span>
+        <span class="n">image_hash</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;image_hash&quot;</span><span class="p">)</span>
+        <span class="n">image_data</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">image_hash</span> <span class="ow">and</span> <span class="n">image_hash</span> <span class="ow">in</span> <span class="n">image_lookup</span><span class="p">:</span>
+            <span class="n">image_info</span> <span class="o">=</span> <span class="n">image_lookup</span><span class="p">[</span><span class="n">image_hash</span><span class="p">]</span>
+            <span class="n">image_data</span> <span class="o">=</span> <span class="n">image_info</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">image_data</span><span class="p">:</span>
+            <span class="kn">from</span><span class="w"> </span><span class="nn">io</span><span class="w"> </span><span class="kn">import</span> <span class="n">BytesIO</span>
+
+            <span class="n">image_stream</span> <span class="o">=</span> <span class="n">BytesIO</span><span class="p">(</span><span class="n">image_data</span><span class="p">)</span>
+            <span class="n">width</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;width_inches&quot;</span><span class="p">,</span> <span class="mf">5.0</span><span class="p">)</span>
+            <span class="n">doc</span><span class="o">.</span><span class="n">add_picture</span><span class="p">(</span><span class="n">image_stream</span><span class="p">,</span> <span class="n">width</span><span class="o">=</span><span class="n">Inches</span><span class="p">(</span><span class="n">width</span><span class="p">))</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_add_list_item</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">block</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add a list item (bullet or numbered).&quot;&quot;&quot;</span>
+        <span class="n">text</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;text&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="n">list_type</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;list_type&quot;</span><span class="p">,</span> <span class="s2">&quot;bullet&quot;</span><span class="p">)</span>
+
+        <span class="n">p</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">add_paragraph</span><span class="p">(</span><span class="n">text</span><span class="p">)</span>
+
+        <span class="n">style_key</span> <span class="o">=</span> <span class="s2">&quot;bullet&quot;</span> <span class="k">if</span> <span class="n">list_type</span> <span class="o">==</span> <span class="s2">&quot;bullet&quot;</span> <span class="k">else</span> <span class="s2">&quot;numbered&quot;</span>
+        <span class="n">style_name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">profile</span><span class="o">.</span><span class="n">list_styles</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">style_key</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">style_name</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_style_exists</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">style_name</span><span class="p">):</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">p</span><span class="o">.</span><span class="n">style</span> <span class="o">=</span> <span class="n">style_name</span>
+            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+                <span class="k">pass</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_style_exists</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span> <span class="n">style_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Check if a style exists in the document.&quot;&quot;&quot;</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">_</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">styles</span><span class="p">[</span><span class="n">style_name</span><span class="p">]</span>
+            <span class="k">return</span> <span class="kc">True</span>
+        <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">False</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_apply_double_anonymous</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">doc</span><span class="p">:</span> <span class="n">DocxDocument</span><span class="p">,</span>
+        <span class="n">writer_doc</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Apply double-anonymous formatting.</span>
+
+<span class="sd">        This removes or masks author-identifying information.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Get author info to mask</span>
+        <span class="n">metadata</span> <span class="o">=</span> <span class="n">writer_doc</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;metadata&quot;</span><span class="p">,</span> <span class="p">{})</span>
+        <span class="n">author</span> <span class="o">=</span> <span class="n">metadata</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;author&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">author</span><span class="p">:</span>
+            <span class="k">return</span>
+
+        <span class="c1"># Search and replace author names with placeholder</span>
+        <span class="c1"># This is a simple implementation; more sophisticated</span>
+        <span class="c1"># masking may be needed for real use</span>
+        <span class="k">for</span> <span class="n">para</span> <span class="ow">in</span> <span class="n">doc</span><span class="o">.</span><span class="n">paragraphs</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">author</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="ow">in</span> <span class="n">para</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span>
+                <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">para</span><span class="o">.</span><span class="n">runs</span><span class="p">:</span>
+                    <span class="k">if</span> <span class="n">author</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="ow">in</span> <span class="n">run</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span>
+                        <span class="c1"># Mask author name</span>
+                        <span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+
+                        <span class="n">run</span><span class="o">.</span><span class="n">text</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span>
+                            <span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">author</span><span class="p">),</span>
+                            <span class="s2">&quot;[Author]&quot;</span><span class="p">,</span>
+                            <span class="n">run</span><span class="o">.</span><span class="n">text</span><span class="p">,</span>
+                            <span class="n">flags</span><span class="o">=</span><span class="n">re</span><span class="o">.</span><span class="n">IGNORECASE</span><span class="p">,</span>
+                        <span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;WordWriter&quot;</span><span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_notebook/_compile.html b/src/scitex/_sphinx_html/_modules/scitex_notebook/_compile.html
new file mode 100644
index 000000000..2c3c3f201
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_notebook/_compile.html
@@ -0,0 +1,914 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_notebook._compile &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+</head>
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
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+</ul>
+</li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_notebook._compile</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_notebook._compile</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;Compile notebook execution history into a DAG from clew DB timestamps.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span><span class="p">,</span> <span class="n">field</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._verify</span><span class="w"> </span><span class="kn">import</span> <span class="n">_get_runs_for_notebook</span>
+
+
+<div class="viewcode-block" id="CompiledNotebook">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.CompiledNotebook">[docs]</a>
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">CompiledNotebook</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Result of compiling a notebook&#39;s execution history.</span>
+
+<span class="sd">    Attributes</span>
+<span class="sd">    ----------</span>
+<span class="sd">    notebook_path : str</span>
+<span class="sd">        Path to the source notebook.</span>
+<span class="sd">    execution_order : list of str</span>
+<span class="sd">        Session IDs in actual execution order (by timestamp).</span>
+<span class="sd">    dag : dict</span>
+<span class="sd">        Adjacency list: {session_id: [dependent_session_ids]}.</span>
+<span class="sd">    runs : list of dict</span>
+<span class="sd">        Run records sorted by execution time.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="n">notebook_path</span><span class="p">:</span> <span class="nb">str</span>
+    <span class="n">execution_order</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+    <span class="n">dag</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">dict</span><span class="p">)</span>
+    <span class="n">runs</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+
+<div class="viewcode-block" id="CompiledNotebook.to_script">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.CompiledNotebook.to_script">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">to_script</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Generate a .py script with sessions in DAG order.&quot;&quot;&quot;</span>
+        <span class="n">topo_order</span> <span class="o">=</span> <span class="n">_topological_sort</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dag</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">execution_order</span><span class="p">)</span>
+        <span class="n">lines</span> <span class="o">=</span> <span class="p">[</span>
+            <span class="s2">&quot;#!/usr/bin/env python3&quot;</span><span class="p">,</span>
+            <span class="s1">&#39;&quot;&quot;&quot;Auto-compiled from notebook execution history.&quot;&quot;&quot;&#39;</span><span class="p">,</span>
+            <span class="s2">&quot;&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;import scitex as stx&quot;</span><span class="p">,</span>
+            <span class="s2">&quot;&quot;</span><span class="p">,</span>
+        <span class="p">]</span>
+
+        <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">sid</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">topo_order</span><span class="p">):</span>
+            <span class="n">run</span> <span class="o">=</span> <span class="n">_find_run</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runs</span><span class="p">,</span> <span class="n">sid</span><span class="p">)</span>
+            <span class="n">script_path</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;script_path&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">run</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span>
+            <span class="n">func_name</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;step_</span><span class="si">{</span><span class="n">idx</span><span class="si">:</span><span class="s2">02d</span><span class="si">}</span><span class="s2">_</span><span class="si">{</span><span class="n">_safe_name</span><span class="p">(</span><span class="n">sid</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;@stx.session&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;def </span><span class="si">{</span><span class="n">func_name</span><span class="si">}</span><span class="s2">():&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;    &quot;&quot;&quot;Session: </span><span class="si">{</span><span class="n">sid</span><span class="si">}</span><span class="s1">&quot;&quot;&quot;&#39;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;    # Original script: </span><span class="si">{</span><span class="n">script_path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;    pass&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">func_name</span><span class="si">}</span><span class="s2">()&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="CompiledNotebook.to_mermaid">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.CompiledNotebook.to_mermaid">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">to_mermaid</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Generate a Mermaid DAG diagram of execution flow.&quot;&quot;&quot;</span>
+        <span class="n">lines</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;graph TD&quot;</span><span class="p">]</span>
+        <span class="k">for</span> <span class="n">sid</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">execution_order</span><span class="p">:</span>
+            <span class="n">run</span> <span class="o">=</span> <span class="n">_find_run</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runs</span><span class="p">,</span> <span class="n">sid</span><span class="p">)</span>
+            <span class="n">label</span> <span class="o">=</span> <span class="n">_short_id</span><span class="p">(</span><span class="n">sid</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">run</span><span class="p">:</span>
+                <span class="n">started</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;started_at&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)[:</span><span class="mi">19</span><span class="p">]</span>
+                <span class="n">label</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">_short_id</span><span class="p">(</span><span class="n">sid</span><span class="p">)</span><span class="si">}</span><span class="s2">&lt;br/&gt;</span><span class="si">{</span><span class="n">started</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;    </span><span class="si">{</span><span class="n">_mermaid_id</span><span class="p">(</span><span class="n">sid</span><span class="p">)</span><span class="si">}</span><span class="s1">[&quot;</span><span class="si">{</span><span class="n">label</span><span class="si">}</span><span class="s1">&quot;]&#39;</span><span class="p">)</span>
+
+        <span class="k">for</span> <span class="n">parent</span><span class="p">,</span> <span class="n">children</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">dag</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">children</span><span class="p">:</span>
+                <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;    </span><span class="si">{</span><span class="n">_mermaid_id</span><span class="p">(</span><span class="n">parent</span><span class="p">)</span><span class="si">}</span><span class="s2"> --&gt; </span><span class="si">{</span><span class="n">_mermaid_id</span><span class="p">(</span><span class="n">child</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span></div>
+</div>
+
+
+
+<div class="viewcode-block" id="compile_notebook">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.compile_notebook">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">compile_notebook</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">CompiledNotebook</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Compile a notebook&#39;s execution history into a DAG.</span>
+
+<span class="sd">    Queries the clew DB for all sessions associated with this notebook,</span>
+<span class="sd">    sorts by timestamp, and builds a dependency DAG based on shared</span>
+<span class="sd">    input/output files.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to the .ipynb file.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    CompiledNotebook</span>
+<span class="sd">        Compiled execution history with DAG and execution order.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_clew</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_db</span>
+
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">runs</span> <span class="o">=</span> <span class="n">_get_runs_for_notebook</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">))</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">runs</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">CompiledNotebook</span><span class="p">(</span><span class="n">notebook_path</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">))</span>
+
+    <span class="n">execution_order</span> <span class="o">=</span> <span class="p">[</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">]</span>
+    <span class="n">dag</span> <span class="o">=</span> <span class="n">_build_dag</span><span class="p">(</span><span class="n">runs</span><span class="p">,</span> <span class="n">db</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">CompiledNotebook</span><span class="p">(</span>
+        <span class="n">notebook_path</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">),</span>
+        <span class="n">execution_order</span><span class="o">=</span><span class="n">execution_order</span><span class="p">,</span>
+        <span class="n">dag</span><span class="o">=</span><span class="n">dag</span><span class="p">,</span>
+        <span class="n">runs</span><span class="o">=</span><span class="n">runs</span><span class="p">,</span>
+    <span class="p">)</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_build_dag</span><span class="p">(</span><span class="n">runs</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">],</span> <span class="n">db</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Build DAG from IO dependencies between sessions.</span>
+
+<span class="sd">    Session A -&gt; Session B if A produced a file that B consumed.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">dag</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="p">{</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]:</span> <span class="p">[]</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">}</span>
+    <span class="n">session_ids</span> <span class="o">=</span> <span class="p">{</span><span class="n">r</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">}</span>
+
+    <span class="c1"># Map: output file -&gt; producing session</span>
+    <span class="n">output_producers</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">:</span>
+        <span class="n">outputs</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_file_hashes</span><span class="p">(</span><span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">],</span> <span class="n">role</span><span class="o">=</span><span class="s2">&quot;output&quot;</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">file_path</span> <span class="ow">in</span> <span class="n">outputs</span><span class="p">:</span>
+            <span class="n">output_producers</span><span class="p">[</span><span class="n">file_path</span><span class="p">]</span> <span class="o">=</span> <span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]</span>
+
+    <span class="c1"># For each session&#39;s inputs, find the producer</span>
+    <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">:</span>
+        <span class="n">inputs</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_file_hashes</span><span class="p">(</span><span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">],</span> <span class="n">role</span><span class="o">=</span><span class="s2">&quot;input&quot;</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">file_path</span> <span class="ow">in</span> <span class="n">inputs</span><span class="p">:</span>
+            <span class="n">producer</span> <span class="o">=</span> <span class="n">output_producers</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">producer</span> <span class="ow">and</span> <span class="n">producer</span> <span class="o">!=</span> <span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]:</span>
+                <span class="k">if</span> <span class="n">producer</span> <span class="ow">in</span> <span class="n">session_ids</span><span class="p">:</span>
+                    <span class="k">if</span> <span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">dag</span><span class="p">[</span><span class="n">producer</span><span class="p">]:</span>
+                        <span class="n">dag</span><span class="p">[</span><span class="n">producer</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">])</span>
+
+    <span class="k">return</span> <span class="n">dag</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_topological_sort</span><span class="p">(</span>
+    <span class="n">dag</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span> <span class="n">fallback_order</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Topological sort of DAG, falling back to timestamp order.</span>
+
+<span class="sd">    Detects cycles and warns if nodes are unreachable due to cycles.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">collections</span><span class="w"> </span><span class="kn">import</span> <span class="n">deque</span> <span class="k">as</span> <span class="n">_deque</span>  <span class="c1"># noqa: STX-I007</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">warnings</span><span class="w"> </span><span class="kn">import</span> <span class="n">warn</span> <span class="k">as</span> <span class="n">_warn</span>  <span class="c1"># noqa: STX-I007</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">dag</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">fallback_order</span>
+
+    <span class="n">in_degree</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="nb">dict</span><span class="o">.</span><span class="n">fromkeys</span><span class="p">(</span><span class="n">dag</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+    <span class="k">for</span> <span class="n">children</span> <span class="ow">in</span> <span class="n">dag</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
+        <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">children</span><span class="p">:</span>
+            <span class="n">in_degree</span><span class="o">.</span><span class="n">setdefault</span><span class="p">(</span><span class="n">child</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+            <span class="n">in_degree</span><span class="p">[</span><span class="n">child</span><span class="p">]</span> <span class="o">+=</span> <span class="mi">1</span>
+
+    <span class="c1"># Kahn&#39;s algorithm with fallback_order as tiebreaker</span>
+    <span class="n">order_map</span> <span class="o">=</span> <span class="p">{</span><span class="n">sid</span><span class="p">:</span> <span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">sid</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">fallback_order</span><span class="p">)}</span>
+    <span class="n">queue</span> <span class="o">=</span> <span class="n">_deque</span><span class="p">(</span>
+        <span class="nb">sorted</span><span class="p">(</span>
+            <span class="p">[</span><span class="n">n</span> <span class="k">for</span> <span class="n">n</span><span class="p">,</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">in_degree</span><span class="o">.</span><span class="n">items</span><span class="p">()</span> <span class="k">if</span> <span class="n">d</span> <span class="o">==</span> <span class="mi">0</span><span class="p">],</span>
+            <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">n</span><span class="p">:</span> <span class="n">order_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="mi">999</span><span class="p">),</span>
+        <span class="p">)</span>
+    <span class="p">)</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">while</span> <span class="n">queue</span><span class="p">:</span>
+        <span class="n">node</span> <span class="o">=</span> <span class="n">queue</span><span class="o">.</span><span class="n">popleft</span><span class="p">()</span>
+        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">node</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">dag</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">node</span><span class="p">,</span> <span class="p">[]):</span>
+            <span class="n">in_degree</span><span class="p">[</span><span class="n">child</span><span class="p">]</span> <span class="o">-=</span> <span class="mi">1</span>
+            <span class="k">if</span> <span class="n">in_degree</span><span class="p">[</span><span class="n">child</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+                <span class="n">queue</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">child</span><span class="p">)</span>
+        <span class="c1"># Re-sort for stable tiebreaking</span>
+        <span class="n">tmp</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">queue</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">n</span><span class="p">:</span> <span class="n">order_map</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="mi">999</span><span class="p">))</span>
+        <span class="n">queue</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+        <span class="n">queue</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">tmp</span><span class="p">)</span>
+
+    <span class="c1"># Detect cycle: nodes in DAG but not in result</span>
+    <span class="n">all_nodes</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">in_degree</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+    <span class="n">sorted_nodes</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
+    <span class="n">cyclic_nodes</span> <span class="o">=</span> <span class="n">all_nodes</span> <span class="o">-</span> <span class="n">sorted_nodes</span>
+    <span class="k">if</span> <span class="n">cyclic_nodes</span><span class="p">:</span>
+        <span class="n">_warn</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Cyclic dependencies detected among sessions: &quot;</span>
+            <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="nb">sorted</span><span class="p">(</span><span class="n">cyclic_nodes</span><span class="p">)</span><span class="si">}</span><span class="s2">. These sessions will be appended &quot;</span>
+            <span class="sa">f</span><span class="s2">&quot;in timestamp order.&quot;</span><span class="p">,</span>
+            <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+        <span class="p">)</span>
+
+    <span class="c1"># Add remaining nodes (cyclic or not in DAG) in fallback order</span>
+    <span class="n">remaining</span> <span class="o">=</span> <span class="p">[</span><span class="n">sid</span> <span class="k">for</span> <span class="n">sid</span> <span class="ow">in</span> <span class="n">fallback_order</span> <span class="k">if</span> <span class="n">sid</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">sorted_nodes</span><span class="p">]</span>
+    <span class="n">result</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">remaining</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">result</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_find_run</span><span class="p">(</span><span class="n">runs</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">],</span> <span class="n">session_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Find a run by session ID.&quot;&quot;&quot;</span>
+    <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">r</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="n">session_id</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">r</span>
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_safe_name</span><span class="p">(</span><span class="n">session_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert session ID to a valid Python identifier fragment.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">session_id</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)[:</span><span class="mi">20</span><span class="p">]</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_short_id</span><span class="p">(</span><span class="n">session_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Shorten session ID for display.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">session_id</span><span class="p">[:</span><span class="mi">20</span><span class="p">]</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">20</span> <span class="k">else</span> <span class="n">session_id</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_mermaid_id</span><span class="p">(</span><span class="n">session_id</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert session ID to valid Mermaid node ID.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">session_id</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_notebook/_convert.html b/src/scitex/_sphinx_html/_modules/scitex_notebook/_convert.html
new file mode 100644
index 000000000..221dc1a64
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_notebook/_convert.html
@@ -0,0 +1,955 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_notebook._convert &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
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+</head>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
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+        </div>
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+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_notebook._convert</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+             
+  <h1>Source code for scitex_notebook._convert</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;Convert Jupyter notebooks to SciTeX-compatible Python scripts.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._compile</span><span class="w"> </span><span class="kn">import</span> <span class="n">compile_notebook</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._parse</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_code_cells</span><span class="p">,</span> <span class="n">parse_notebook</span>
+
+<span class="c1"># IPython magic patterns to strip</span>
+<span class="n">_MAGIC_RE</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;^\s*[%!].*$&quot;</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span><span class="p">)</span>
+
+<span class="c1"># Import statement pattern (matches: import x, import x as y, import x.y.z as w, from x import y)</span>
+<span class="n">_IMPORT_RE</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span>
+    <span class="sa">r</span><span class="s2">&quot;^(?:import\s+\S+(?:\s+as\s+\S+)?|from\s+\S+\s+import\s+.+)$&quot;</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">MULTILINE</span>
+<span class="p">)</span>
+
+<span class="c1"># Common notebook patterns to convert to SciTeX equivalents</span>
+<span class="n">_CONVERSIONS</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="c1"># plt.show() → stx.io.save(fig, &quot;figure.png&quot;)</span>
+    <span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;plt\.show\(\)&quot;</span><span class="p">),</span> <span class="s1">&#39;# stx.io.save(fig, &quot;figure.png&quot;)  # was: plt.show()&#39;</span><span class="p">),</span>
+    <span class="c1"># plt.savefig(&quot;...&quot;) → stx.io.save(fig, &quot;...&quot;)</span>
+    <span class="p">(</span>
+        <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;plt\.savefig\(([&quot;</span><span class="se">\&#39;</span><span class="s1">].*?[&quot;</span><span class="se">\&#39;</span><span class="s1">])\)&#39;</span><span class="p">),</span>
+        <span class="sa">r</span><span class="s2">&quot;stx.io.save(fig, \1)  # was: plt.savefig&quot;</span><span class="p">,</span>
+    <span class="p">),</span>
+    <span class="c1"># df.to_csv(&quot;...&quot;) → stx.io.save(df, &quot;...&quot;)</span>
+    <span class="p">(</span>
+        <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;(\w+)\.to_csv\(([&quot;</span><span class="se">\&#39;</span><span class="s1">].*?[&quot;</span><span class="se">\&#39;</span><span class="s1">])\)&#39;</span><span class="p">),</span>
+        <span class="sa">r</span><span class="s2">&quot;stx.io.save(\1, \2)  # was: .to_csv&quot;</span><span class="p">,</span>
+    <span class="p">),</span>
+    <span class="c1"># pd.read_csv(&quot;...&quot;) → stx.io.load(&quot;...&quot;)</span>
+    <span class="p">(</span>
+        <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;pd\.read_csv\(([&quot;</span><span class="se">\&#39;</span><span class="s1">].*?[&quot;</span><span class="se">\&#39;</span><span class="s1">])\)&#39;</span><span class="p">),</span>
+        <span class="sa">r</span><span class="s1">&#39;stx.io.load(\1)  # was: pd.read_csv&#39;</span><span class="p">,</span>
+    <span class="p">),</span>
+    <span class="c1"># np.save(&quot;...&quot;, arr) → stx.io.save(arr, &quot;...&quot;)</span>
+    <span class="p">(</span>
+        <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;np\.save\(([&quot;</span><span class="se">\&#39;</span><span class="s1">].*?[&quot;</span><span class="se">\&#39;</span><span class="s1">])\s*,\s*(.+?)\)&#39;</span><span class="p">),</span>
+        <span class="sa">r</span><span class="s2">&quot;stx.io.save(\2, \1)  # was: np.save&quot;</span><span class="p">,</span>
+    <span class="p">),</span>
+    <span class="c1"># np.load(&quot;...&quot;) → stx.io.load(&quot;...&quot;)</span>
+    <span class="p">(</span>
+        <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;np\.load\(([&quot;</span><span class="se">\&#39;</span><span class="s1">].*?[&quot;</span><span class="se">\&#39;</span><span class="s1">])\)&#39;</span><span class="p">),</span>
+        <span class="sa">r</span><span class="s1">&#39;stx.io.load(\1)  # was: np.load&#39;</span><span class="p">,</span>
+    <span class="p">),</span>
+<span class="p">]</span>
+
+
+<div class="viewcode-block" id="convert_notebook">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.convert_notebook">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">convert_notebook</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">output</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">,</span> <span class="kc">None</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">order</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;cell&quot;</span><span class="p">,</span>
+    <span class="n">mode</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;per_cell&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert a .ipynb notebook to a .py script with @stx.session.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to the .ipynb file.</span>
+<span class="sd">    output : str or Path, optional</span>
+<span class="sd">        Output .py file path. If None, returns string only.</span>
+<span class="sd">    order : str</span>
+<span class="sd">        Cell ordering: &quot;cell&quot; (notebook order) or &quot;dag&quot; (execution order</span>
+<span class="sd">        from clew DB timestamps).</span>
+<span class="sd">    mode : str</span>
+<span class="sd">        Conversion mode:</span>
+<span class="sd">        - &quot;per_cell&quot;: Each code cell becomes a separate @stx.session function (default).</span>
+<span class="sd">        - &quot;unified&quot;: All cells merged into a single @stx.session main() function.</span>
+<span class="sd">          Markdown cells become comments, imports are hoisted, and common</span>
+<span class="sd">          notebook patterns (plt.show, pd.read_csv, etc.) are converted to</span>
+<span class="sd">          SciTeX equivalents (stx.io.save/load).</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        The generated Python script content.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">mode</span> <span class="o">==</span> <span class="s2">&quot;unified&quot;</span><span class="p">:</span>
+        <span class="n">script</span> <span class="o">=</span> <span class="n">_convert_unified</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">order</span> <span class="o">==</span> <span class="s2">&quot;cell&quot;</span><span class="p">:</span>
+        <span class="n">script</span> <span class="o">=</span> <span class="n">_convert_cell_order</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">order</span> <span class="o">==</span> <span class="s2">&quot;dag&quot;</span><span class="p">:</span>
+        <span class="n">script</span> <span class="o">=</span> <span class="n">_convert_dag_order</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Invalid order: </span><span class="si">{</span><span class="n">order</span><span class="si">!r}</span><span class="s2">. Must be &#39;cell&#39; or &#39;dag&#39;.&quot;</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">output</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">output</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">output</span><span class="p">)</span>
+        <span class="n">output</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="n">output</span><span class="o">.</span><span class="n">write_text</span><span class="p">(</span><span class="n">script</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s2">&quot;utf-8&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">script</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_convert_unified</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert notebook into a single @stx.session main() function.</span>
+
+<span class="sd">    - Markdown cells become block comments</span>
+<span class="sd">    - Imports are hoisted to module level</span>
+<span class="sd">    - Code is merged into main() body</span>
+<span class="sd">    - Common IO patterns are converted to stx.io equivalents</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">all_cells</span> <span class="o">=</span> <span class="n">parse_notebook</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="n">imports</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">body_lines</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">has_plt</span> <span class="o">=</span> <span class="kc">False</span>
+
+    <span class="k">for</span> <span class="n">cell</span> <span class="ow">in</span> <span class="n">all_cells</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">cell</span><span class="p">[</span><span class="s2">&quot;cell_type&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;markdown&quot;</span><span class="p">:</span>
+            <span class="c1"># Convert markdown to comments</span>
+            <span class="n">md_text</span> <span class="o">=</span> <span class="n">cell</span><span class="p">[</span><span class="s2">&quot;source&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">md_text</span><span class="p">:</span>
+                <span class="k">continue</span>
+            <span class="n">body_lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">md_line</span> <span class="ow">in</span> <span class="n">md_text</span><span class="o">.</span><span class="n">splitlines</span><span class="p">():</span>
+                <span class="n">body_lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;    # </span><span class="si">{</span><span class="n">md_line</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">body_lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+        <span class="k">elif</span> <span class="n">cell</span><span class="p">[</span><span class="s2">&quot;cell_type&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;code&quot;</span><span class="p">:</span>
+            <span class="n">source</span> <span class="o">=</span> <span class="n">_clean_source</span><span class="p">(</span><span class="n">cell</span><span class="p">[</span><span class="s2">&quot;source&quot;</span><span class="p">])</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">source</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+                <span class="k">continue</span>
+
+            <span class="c1"># Separate imports from body code</span>
+            <span class="n">cell_imports</span><span class="p">,</span> <span class="n">cell_body</span> <span class="o">=</span> <span class="n">_separate_imports</span><span class="p">(</span><span class="n">source</span><span class="p">)</span>
+            <span class="n">imports</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">cell_imports</span><span class="p">)</span>
+
+            <span class="k">if</span> <span class="n">cell_body</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+                <span class="c1"># Apply SciTeX conversions</span>
+                <span class="n">cell_body</span> <span class="o">=</span> <span class="n">_apply_conversions</span><span class="p">(</span><span class="n">cell_body</span><span class="p">)</span>
+                <span class="n">body_lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+                <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">cell_body</span><span class="o">.</span><span class="n">splitlines</span><span class="p">():</span>
+                    <span class="n">body_lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;    </span><span class="si">{</span><span class="n">line</span><span class="si">}</span><span class="s2">&quot;</span> <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+            <span class="c1"># Track matplotlib usage</span>
+            <span class="k">if</span> <span class="s2">&quot;plt.&quot;</span> <span class="ow">in</span> <span class="n">source</span> <span class="ow">or</span> <span class="s2">&quot;matplotlib&quot;</span> <span class="ow">in</span> <span class="n">source</span><span class="p">:</span>
+                <span class="n">has_plt</span> <span class="o">=</span> <span class="kc">True</span>
+
+    <span class="c1"># Deduplicate imports</span>
+    <span class="n">seen</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+    <span class="n">unique_imports</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">imp</span> <span class="ow">in</span> <span class="n">imports</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">imp</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">seen</span><span class="p">:</span>
+            <span class="n">seen</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">imp</span><span class="p">)</span>
+            <span class="n">unique_imports</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">imp</span><span class="p">)</span>
+
+    <span class="c1"># Filter out imports that stx.session provides (plt is injected)</span>
+    <span class="n">filtered_imports</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="n">imp</span>
+        <span class="k">for</span> <span class="n">imp</span> <span class="ow">in</span> <span class="n">unique_imports</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">imp</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;import matplotlib&quot;</span><span class="p">)</span>
+        <span class="ow">and</span> <span class="ow">not</span> <span class="n">imp</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;from matplotlib&quot;</span><span class="p">)</span>
+        <span class="ow">and</span> <span class="s2">&quot;matplotlib.pyplot&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">imp</span>
+    <span class="p">]</span>
+
+    <span class="c1"># Build script</span>
+    <span class="n">lines</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="s2">&quot;#!/usr/bin/env python3&quot;</span><span class="p">,</span>
+        <span class="sa">f</span><span class="s1">&#39;&quot;&quot;&quot;Converted from </span><span class="si">{</span><span class="n">path</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s1"> using scitex notebook convert --mode unified.&quot;&quot;&quot;&#39;</span><span class="p">,</span>
+        <span class="s2">&quot;&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;import scitex as stx&quot;</span><span class="p">,</span>
+    <span class="p">]</span>
+
+    <span class="c1"># Add non-scitex imports</span>
+    <span class="k">for</span> <span class="n">imp</span> <span class="ow">in</span> <span class="n">filtered_imports</span><span class="p">:</span>
+        <span class="k">if</span> <span class="s2">&quot;scitex&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">imp</span><span class="p">:</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">imp</span><span class="p">)</span>
+
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Build injected parameters</span>
+    <span class="n">injected</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;    CONFIG=stx.INJECTED,&quot;</span><span class="p">,</span> <span class="s2">&quot;    logger=stx.INJECTED,&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">has_plt</span><span class="p">:</span>
+        <span class="n">injected</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;    plt=stx.INJECTED,&quot;</span><span class="p">)</span>
+
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;@stx.session(seed=42)&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;def main(&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">injected</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;):&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;    &quot;&quot;&quot;Analysis pipeline converted from </span><span class="si">{</span><span class="n">path</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s1">.&quot;&quot;&quot;&#39;</span><span class="p">)</span>
+
+    <span class="c1"># Add body</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">body_lines</span><span class="p">)</span>
+
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;    return 0&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">&#39;if __name__ == &quot;__main__&quot;:&#39;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;    main()&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;# EOF&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_separate_imports</span><span class="p">(</span><span class="n">source</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Separate import statements from body code.&quot;&quot;&quot;</span>
+    <span class="n">imports</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">body_lines</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">source</span><span class="o">.</span><span class="n">splitlines</span><span class="p">():</span>
+        <span class="n">stripped</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="k">if</span> <span class="n">_IMPORT_RE</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="n">stripped</span><span class="p">):</span>
+            <span class="n">imports</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">stripped</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">body_lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">imports</span><span class="p">,</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">body_lines</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_apply_conversions</span><span class="p">(</span><span class="n">source</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Apply SciTeX pattern conversions to source code.&quot;&quot;&quot;</span>
+    <span class="k">for</span> <span class="n">pattern</span><span class="p">,</span> <span class="n">replacement</span> <span class="ow">in</span> <span class="n">_CONVERSIONS</span><span class="p">:</span>
+        <span class="n">source</span> <span class="o">=</span> <span class="n">pattern</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span><span class="n">replacement</span><span class="p">,</span> <span class="n">source</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">source</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_convert_cell_order</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert notebook in cell index order.&quot;&quot;&quot;</span>
+    <span class="n">cells</span> <span class="o">=</span> <span class="n">get_code_cells</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="n">lines</span> <span class="o">=</span> <span class="n">_script_header</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+
+    <span class="k">for</span> <span class="n">cell</span> <span class="ow">in</span> <span class="n">cells</span><span class="p">:</span>
+        <span class="n">source</span> <span class="o">=</span> <span class="n">_clean_source</span><span class="p">(</span><span class="n">cell</span><span class="p">[</span><span class="s2">&quot;source&quot;</span><span class="p">])</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">source</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+            <span class="k">continue</span>
+
+        <span class="n">idx</span> <span class="o">=</span> <span class="n">cell</span><span class="p">[</span><span class="s2">&quot;index&quot;</span><span class="p">]</span>
+        <span class="n">func_name</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;cell_</span><span class="si">{</span><span class="n">idx</span><span class="si">:</span><span class="s2">02d</span><span class="si">}</span><span class="s2">&quot;</span>
+
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;@stx.session&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;def </span><span class="si">{</span><span class="n">func_name</span><span class="si">}</span><span class="s2">():&quot;</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">source</span><span class="o">.</span><span class="n">splitlines</span><span class="p">():</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;    </span><span class="si">{</span><span class="n">line</span><span class="si">}</span><span class="s2">&quot;</span> <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;    return 0&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">func_name</span><span class="si">}</span><span class="s2">()&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_convert_dag_order</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert notebook in DAG execution order from clew DB.&quot;&quot;&quot;</span>
+    <span class="n">compiled</span> <span class="o">=</span> <span class="n">compile_notebook</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">compiled</span><span class="o">.</span><span class="n">execution_order</span><span class="p">:</span>
+        <span class="c1"># No execution history; fall back to cell order</span>
+        <span class="k">return</span> <span class="n">_convert_cell_order</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">compiled</span><span class="o">.</span><span class="n">to_script</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_clean_source</span><span class="p">(</span><span class="n">source</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Strip IPython magics and clean up source code.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_MAGIC_RE</span><span class="o">.</span><span class="n">sub</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">source</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_script_header</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate script header.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="p">[</span>
+        <span class="s2">&quot;#!/usr/bin/env python3&quot;</span><span class="p">,</span>
+        <span class="sa">f</span><span class="s1">&#39;&quot;&quot;&quot;Converted from </span><span class="si">{</span><span class="n">path</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s1">.&quot;&quot;&quot;&#39;</span><span class="p">,</span>
+        <span class="s2">&quot;&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;import scitex as stx&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;&quot;</span><span class="p">,</span>
+    <span class="p">]</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_notebook/_parse.html b/src/scitex/_sphinx_html/_modules/scitex_notebook/_parse.html
new file mode 100644
index 000000000..e2847f373
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_notebook/_parse.html
@@ -0,0 +1,756 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_notebook._parse &mdash; SciTeX v0.0.0</title>
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
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+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/gen.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#project-templates">Project Templates</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_notebook._parse</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_notebook._parse</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;Parse Jupyter notebook files using stdlib json (no nbformat dependency).&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Union</span>
+
+
+<div class="viewcode-block" id="parse_notebook">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.parse_notebook">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">parse_notebook</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parse a .ipynb file and extract code cells.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to the .ipynb file.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list of dict</span>
+<span class="sd">        Code cells with keys: index, source, cell_id, cell_type.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">raise</span> <span class="ne">FileNotFoundError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Notebook not found: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">path</span><span class="o">.</span><span class="n">suffix</span> <span class="o">!=</span> <span class="s2">&quot;.ipynb&quot;</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Not a notebook file: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s2">&quot;utf-8&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+        <span class="n">nb</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+
+    <span class="n">cells</span> <span class="o">=</span> <span class="n">nb</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;cells&quot;</span><span class="p">,</span> <span class="p">[])</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">cell</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">cells</span><span class="p">):</span>
+        <span class="n">cell_type</span> <span class="o">=</span> <span class="n">cell</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;cell_type&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+        <span class="n">source_lines</span> <span class="o">=</span> <span class="n">cell</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;source&quot;</span><span class="p">,</span> <span class="p">[])</span>
+        <span class="n">source</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">source_lines</span><span class="p">)</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">source_lines</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="n">source_lines</span>
+        <span class="p">)</span>
+        <span class="n">cell_id</span> <span class="o">=</span> <span class="n">cell</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;id&quot;</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;cell_</span><span class="si">{</span><span class="n">idx</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+            <span class="p">{</span>
+                <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">idx</span><span class="p">,</span>
+                <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="n">source</span><span class="p">,</span>
+                <span class="s2">&quot;cell_id&quot;</span><span class="p">:</span> <span class="n">cell_id</span><span class="p">,</span>
+                <span class="s2">&quot;cell_type&quot;</span><span class="p">:</span> <span class="n">cell_type</span><span class="p">,</span>
+            <span class="p">}</span>
+        <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">result</span></div>
+
+
+
+<div class="viewcode-block" id="get_code_cells">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.get_code_cells">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_code_cells</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parse notebook and return only code cells.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to the .ipynb file.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list of dict</span>
+<span class="sd">        Code cells only.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="p">[</span><span class="n">c</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">parse_notebook</span><span class="p">(</span><span class="n">path</span><span class="p">)</span> <span class="k">if</span> <span class="n">c</span><span class="p">[</span><span class="s2">&quot;cell_type&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;code&quot;</span><span class="p">]</span></div>
+
+
+
+<div class="viewcode-block" id="get_notebook_name">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.get_notebook_name">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_notebook_name</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the notebook stem name without extension.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">stem</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_notebook/_verify.html b/src/scitex/_sphinx_html/_modules/scitex_notebook/_verify.html
new file mode 100644
index 000000000..e94f5db8d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_notebook/_verify.html
@@ -0,0 +1,802 @@
+
+
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
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+      <div class="wy-nav-content">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_notebook._verify</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_notebook._verify</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;Verify notebook sessions and check for untracked IO.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._parse</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_code_cells</span>
+
+<span class="c1"># Patterns for scitex.io calls</span>
+<span class="n">_IO_LOAD_RE</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;(?:scitex|stx)\.io\.load\s*\(&quot;</span><span class="p">)</span>
+<span class="n">_IO_SAVE_RE</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;(?:scitex|stx)\.io\.save\s*\(&quot;</span><span class="p">)</span>
+<span class="n">_SESSION_RE</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;@(?:scitex|stx)\.session&quot;</span><span class="p">)</span>
+
+
+<div class="viewcode-block" id="verify_notebook">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.verify_notebook">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">verify_notebook</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Verify all clew sessions associated with a notebook.</span>
+
+<span class="sd">    Finds all runs in the clew DB whose metadata contains this notebook&#39;s</span>
+<span class="sd">    path, then runs L1 (cache) verification on each.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to the .ipynb file.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list of dict</span>
+<span class="sd">        Verification results per session.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_clew</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_db</span><span class="p">,</span> <span class="n">verify_run</span>
+
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+    <span class="n">db</span> <span class="o">=</span> <span class="n">get_db</span><span class="p">()</span>
+    <span class="n">runs</span> <span class="o">=</span> <span class="n">_get_runs_for_notebook</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">))</span>
+
+    <span class="n">results</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">verification</span> <span class="o">=</span> <span class="n">verify_run</span><span class="p">(</span><span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">])</span>
+            <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span>
+                    <span class="s2">&quot;session_id&quot;</span><span class="p">:</span> <span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">],</span>
+                    <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="n">verification</span><span class="o">.</span><span class="n">status</span><span class="o">.</span><span class="n">value</span><span class="p">,</span>
+                    <span class="s2">&quot;is_verified&quot;</span><span class="p">:</span> <span class="n">verification</span><span class="o">.</span><span class="n">is_verified</span><span class="p">,</span>
+                    <span class="s2">&quot;started_at&quot;</span><span class="p">:</span> <span class="n">run</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;started_at&quot;</span><span class="p">),</span>
+                <span class="p">}</span>
+            <span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">exc</span><span class="p">:</span>
+            <span class="n">results</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span>
+                    <span class="s2">&quot;session_id&quot;</span><span class="p">:</span> <span class="n">run</span><span class="p">[</span><span class="s2">&quot;session_id&quot;</span><span class="p">],</span>
+                    <span class="s2">&quot;status&quot;</span><span class="p">:</span> <span class="s2">&quot;error&quot;</span><span class="p">,</span>
+                    <span class="s2">&quot;is_verified&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+                    <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">exc</span><span class="p">),</span>
+                <span class="p">}</span>
+            <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<div class="viewcode-block" id="check_notebook">
+<a class="viewcode-back" href="../../source/api/notebook.html#scitex.notebook.check_notebook">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">check_notebook</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Find cells with scitex.io calls not wrapped in @scitex.session.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to the .ipynb file.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list of dict</span>
+<span class="sd">        Cells with untracked IO: {index, has_load, has_save, has_session}.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">cells</span> <span class="o">=</span> <span class="n">get_code_cells</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="n">issues</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">for</span> <span class="n">cell</span> <span class="ow">in</span> <span class="n">cells</span><span class="p">:</span>
+        <span class="n">source</span> <span class="o">=</span> <span class="n">cell</span><span class="p">[</span><span class="s2">&quot;source&quot;</span><span class="p">]</span>
+        <span class="n">has_load</span> <span class="o">=</span> <span class="nb">bool</span><span class="p">(</span><span class="n">_IO_LOAD_RE</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">source</span><span class="p">))</span>
+        <span class="n">has_save</span> <span class="o">=</span> <span class="nb">bool</span><span class="p">(</span><span class="n">_IO_SAVE_RE</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">source</span><span class="p">))</span>
+        <span class="n">has_session</span> <span class="o">=</span> <span class="nb">bool</span><span class="p">(</span><span class="n">_SESSION_RE</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">source</span><span class="p">))</span>
+
+        <span class="k">if</span> <span class="p">(</span><span class="n">has_load</span> <span class="ow">or</span> <span class="n">has_save</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">has_session</span><span class="p">:</span>
+            <span class="n">issues</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span>
+                    <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="n">cell</span><span class="p">[</span><span class="s2">&quot;index&quot;</span><span class="p">],</span>
+                    <span class="s2">&quot;has_load&quot;</span><span class="p">:</span> <span class="n">has_load</span><span class="p">,</span>
+                    <span class="s2">&quot;has_save&quot;</span><span class="p">:</span> <span class="n">has_save</span><span class="p">,</span>
+                    <span class="s2">&quot;has_session&quot;</span><span class="p">:</span> <span class="n">has_session</span><span class="p">,</span>
+                <span class="p">}</span>
+            <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">issues</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_runs_for_notebook</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="n">notebook_path</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Query clew DB for runs associated with a notebook path.&quot;&quot;&quot;</span>
+    <span class="n">runs</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">list_runs</span><span class="p">(</span><span class="n">limit</span><span class="o">=</span><span class="mi">1000</span><span class="p">)</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">run</span> <span class="ow">in</span> <span class="n">runs</span><span class="p">:</span>
+        <span class="n">meta_str</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;metadata&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">meta_str</span><span class="p">:</span>
+            <span class="c1"># Also check script_path for notebook path</span>
+            <span class="n">sp</span> <span class="o">=</span> <span class="n">run</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;script_path&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">sp</span> <span class="ow">and</span> <span class="n">sp</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.ipynb&quot;</span><span class="p">):</span>
+                <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">sp</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span> <span class="o">==</span> <span class="n">notebook_path</span><span class="p">:</span>
+                    <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">run</span><span class="p">)</span>
+            <span class="k">continue</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">meta</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">meta_str</span><span class="p">)</span>
+            <span class="n">nb_path</span> <span class="o">=</span> <span class="n">meta</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;notebook_path&quot;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">nb_path</span> <span class="ow">and</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">nb_path</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span> <span class="o">==</span> <span class="n">notebook_path</span><span class="p">:</span>
+                <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">run</span><span class="p">)</span>
+        <span class="k">except</span> <span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">JSONDecodeError</span><span class="p">,</span> <span class="ne">TypeError</span><span class="p">):</span>
+            <span class="k">continue</span>
+
+    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">r</span><span class="p">:</span> <span class="n">r</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;started_at&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">))</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_os/_check_host.html b/src/scitex/_sphinx_html/_modules/scitex_os/_check_host.html
new file mode 100644
index 000000000..3a9b06e80
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_os/_check_host.html
@@ -0,0 +1,710 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_os._check_host &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_os._check_host</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_os._check_host</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Time-stamp: &quot;2024-11-02 13:43:36 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-python/src/scitex/os/_check_host.py</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">socket</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+
+
+<div class="viewcode-block" id="check_host">
+<a class="viewcode-back" href="../../source/api/os.html#scitex.os.check_host">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">check_host</span><span class="p">(</span><span class="n">keyword</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if the current hostname contains the given keyword.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">keyword</span> <span class="ow">in</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span></div>
+
+
+
+<span class="n">is_host</span> <span class="o">=</span> <span class="n">check_host</span>
+
+
+<div class="viewcode-block" id="verify_host">
+<a class="viewcode-back" href="../../source/api/os.html#scitex.os.verify_host">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">verify_host</span><span class="p">(</span><span class="n">keyword</span><span class="p">):</span>
+    <span class="k">if</span> <span class="n">is_host</span><span class="p">(</span><span class="n">keyword</span><span class="p">):</span>
+        <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Host verification successed for keyword: </span><span class="si">{</span><span class="n">keyword</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">return</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Host verification failed for keyword: </span><span class="si">{</span><span class="n">keyword</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span></div>
+
+
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+    <span class="c1"># check_host(&quot;ywata&quot;)</span>
+    <span class="n">verify_host</span><span class="p">(</span><span class="s2">&quot;titan&quot;</span><span class="p">)</span>
+    <span class="n">verify_host</span><span class="p">(</span><span class="s2">&quot;ywata&quot;</span><span class="p">)</span>
+    <span class="n">verify_host</span><span class="p">(</span><span class="s2">&quot;crest&quot;</span><span class="p">)</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_os/_mv.html b/src/scitex/_sphinx_html/_modules/scitex_os/_mv.html
new file mode 100644
index 000000000..9fd58540a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_os/_mv.html
@@ -0,0 +1,726 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_os._mv &mdash; SciTeX v0.0.0</title>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
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+      <li class="breadcrumb-item active">scitex_os._mv</li>
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+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_os._mv</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Time-stamp: &quot;2024-04-06 09:00:45 (ywatanabe)&quot;</span>
+
+<span class="c1"># import os</span>
+<span class="c1"># import shutil</span>
+
+<span class="c1"># def mv(src, tgt):</span>
+<span class="c1">#     successful = True</span>
+<span class="c1">#     os.makedirs(tgt, exist_ok=True)</span>
+
+<span class="c1">#     if os.path.isdir(src):</span>
+<span class="c1">#         # Iterate over the items in the directory</span>
+<span class="c1">#         for item in os.listdir(src):</span>
+<span class="c1">#             item_path = os.path.join(src, item)</span>
+<span class="c1">#             # Check if the item is a file</span>
+<span class="c1">#             if os.path.isfile(item_path):</span>
+<span class="c1">#                 try:</span>
+<span class="c1">#                     shutil.move(item_path, tgt)</span>
+<span class="c1">#                     print(f&quot;\nMoved file from {item_path} to {tgt}&quot;)</span>
+<span class="c1">#                 except OSError as e:</span>
+<span class="c1">#                     print(f&quot;\nError: {e}&quot;)</span>
+<span class="c1">#                     successful = False</span>
+<span class="c1">#             else:</span>
+<span class="c1">#                 print(f&quot;\nSkipped directory {item_path}&quot;)</span>
+<span class="c1">#     else:</span>
+<span class="c1">#         # If src is a file, just move it</span>
+<span class="c1">#         try:</span>
+<span class="c1">#             shutil.move(src, tgt)</span>
+<span class="c1">#             print(f&quot;\nMoved from {src} to {tgt}&quot;)</span>
+<span class="c1">#         except OSError as e:</span>
+<span class="c1">#             print(f&quot;\nError: {e}&quot;)</span>
+<span class="c1">#             successful = False</span>
+
+<span class="c1">#     return successful</span>
+
+
+<div class="viewcode-block" id="mv">
+<a class="viewcode-back" href="../../source/api/os.html#scitex.os.mv">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">mv</span><span class="p">(</span><span class="n">src</span><span class="p">,</span> <span class="n">tgt</span><span class="p">):</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">shutil</span>
+
+    <span class="n">successful</span> <span class="o">=</span> <span class="kc">True</span>
+    <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">tgt</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">shutil</span><span class="o">.</span><span class="n">move</span><span class="p">(</span><span class="n">src</span><span class="p">,</span> <span class="n">tgt</span><span class="p">)</span>
+        <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Moved from </span><span class="si">{</span><span class="n">src</span><span class="si">}</span><span class="s2"> to </span><span class="si">{</span><span class="n">tgt</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Error: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="n">successful</span> <span class="o">=</span> <span class="kc">False</span>
+
+    <span class="k">return</span> <span class="n">successful</span></div>
+
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_parallel/_run.html b/src/scitex/_sphinx_html/_modules/scitex_parallel/_run.html
new file mode 100644
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+++ b/src/scitex/_sphinx_html/_modules/scitex_parallel/_run.html
@@ -0,0 +1,769 @@
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+      <li class="breadcrumb-item active">scitex_parallel._run</li>
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+             
+  <h1>Source code for scitex_parallel._run</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># File: src/scitex_parallel/_run.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Parallel execution utilities using ThreadPoolExecutor.</span>
+
+<span class="sd">1. Functionality:</span>
+<span class="sd">   - Runs functions in parallel using ThreadPoolExecutor</span>
+<span class="sd">   - Handles both single and multiple return values</span>
+<span class="sd">   - Supports automatic CPU core detection</span>
+<span class="sd">2. Input:</span>
+<span class="sd">   - Function to run</span>
+<span class="sd">   - List of items to process</span>
+<span class="sd">   - Optional parameters for execution control</span>
+<span class="sd">3. Output:</span>
+<span class="sd">   - List of results or concatenated tuple</span>
+<span class="sd">4. Prerequisites:</span>
+<span class="sd">   - concurrent.futures</span>
+<span class="sd">   - tqdm</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">multiprocessing</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">concurrent.futures</span><span class="w"> </span><span class="kn">import</span> <span class="n">ThreadPoolExecutor</span><span class="p">,</span> <span class="n">as_completed</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Callable</span><span class="p">,</span> <span class="n">List</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">tqdm</span><span class="w"> </span><span class="kn">import</span> <span class="n">tqdm</span>
+
+
+<div class="viewcode-block" id="run">
+<a class="viewcode-back" href="../../source/api/parallel.html#scitex.parallel.run">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">run</span><span class="p">(</span>
+    <span class="n">func</span><span class="p">:</span> <span class="n">Callable</span><span class="p">,</span>
+    <span class="n">args_list</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">tuple</span><span class="p">],</span>
+    <span class="n">n_jobs</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span>
+    <span class="n">desc</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;Processing&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Runs function in parallel using ThreadPoolExecutor with tuple arguments.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    func : Callable</span>
+<span class="sd">        Function to run in parallel</span>
+<span class="sd">    args_list : List[tuple]</span>
+<span class="sd">        List of argument tuples, each tuple contains arguments for one function call</span>
+<span class="sd">    n_jobs : int, optional</span>
+<span class="sd">        Number of jobs to run in parallel. -1 means using all processors</span>
+<span class="sd">    desc : str, optional</span>
+<span class="sd">        Description for progress bar</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    List[Any]</span>
+<span class="sd">        Results of parallel execution</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; def add(x, y):</span>
+<span class="sd">    ...     return x + y</span>
+<span class="sd">    &gt;&gt;&gt; args_list = [(1, 4), (2, 5), (3, 6)]</span>
+<span class="sd">    &gt;&gt;&gt; run(add, args_list)</span>
+<span class="sd">    [5, 7, 9]</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">args_list</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Args list cannot be empty&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="nb">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Func must be callable&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Validate n_jobs before conversion: must be -1 or &gt;= 1</span>
+    <span class="k">if</span> <span class="n">n_jobs</span> <span class="o">&lt;</span> <span class="o">-</span><span class="mi">1</span> <span class="ow">or</span> <span class="n">n_jobs</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;n_jobs must be &gt;= 1 or -1&quot;</span><span class="p">)</span>
+
+    <span class="n">cpu_count</span> <span class="o">=</span> <span class="n">multiprocessing</span><span class="o">.</span><span class="n">cpu_count</span><span class="p">()</span>
+    <span class="n">n_jobs</span> <span class="o">=</span> <span class="n">cpu_count</span> <span class="k">if</span> <span class="n">n_jobs</span> <span class="o">==</span> <span class="o">-</span><span class="mi">1</span> <span class="k">else</span> <span class="n">n_jobs</span>
+
+    <span class="k">if</span> <span class="n">n_jobs</span> <span class="o">&gt;</span> <span class="n">cpu_count</span><span class="p">:</span>
+        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;n_jobs (</span><span class="si">{</span><span class="n">n_jobs</span><span class="si">}</span><span class="s2">) is greater than CPU count (</span><span class="si">{</span><span class="n">cpu_count</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+
+    <span class="n">results</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">args_list</span><span class="p">)</span>  <span class="c1"># Pre-allocate list</span>
+
+    <span class="k">with</span> <span class="n">ThreadPoolExecutor</span><span class="p">(</span><span class="n">max_workers</span><span class="o">=</span><span class="n">n_jobs</span><span class="p">)</span> <span class="k">as</span> <span class="n">executor</span><span class="p">:</span>
+        <span class="n">futures</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="n">executor</span><span class="o">.</span><span class="n">submit</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span> <span class="n">idx</span> <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">args</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">args_list</span><span class="p">)</span>
+        <span class="p">}</span>
+        <span class="k">for</span> <span class="n">future</span> <span class="ow">in</span> <span class="n">tqdm</span><span class="p">(</span><span class="n">as_completed</span><span class="p">(</span><span class="n">futures</span><span class="p">),</span> <span class="n">total</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="n">args_list</span><span class="p">),</span> <span class="n">desc</span><span class="o">=</span><span class="n">desc</span><span class="p">):</span>
+            <span class="n">idx</span> <span class="o">=</span> <span class="n">futures</span><span class="p">[</span><span class="n">future</span><span class="p">]</span>
+            <span class="n">results</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="n">future</span><span class="o">.</span><span class="n">result</span><span class="p">()</span>
+
+    <span class="c1"># If results contain multiple values (tuples), transpose them</span>
+    <span class="k">if</span> <span class="n">results</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">results</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">tuple</span><span class="p">):</span>
+        <span class="n">n_vars</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">results</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+        <span class="k">return</span> <span class="nb">tuple</span><span class="p">([</span><span class="n">result</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">result</span> <span class="ow">in</span> <span class="n">results</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_vars</span><span class="p">))</span>
+
+    <span class="k">return</span> <span class="n">results</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
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+</ul>
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+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._clean</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_path._clean</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Time-stamp: &quot;2025-05-15 00:55:30 (ywatanabe)&quot;</span>
+<span class="c1"># File: /data/gpfs/projects/punim2354/ywatanabe/scitex_repo/src/scitex/path/_clean.py</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+
+<div class="viewcode-block" id="clean">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.clean">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">clean</span><span class="p">(</span><span class="n">path_string</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Cleans and normalizes a file system path string.</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; clean(&#39;/home/user/./folder/../file.txt&#39;)</span>
+<span class="sd">    &#39;/home/user/file.txt&#39;</span>
+<span class="sd">    &gt;&gt;&gt; clean(&#39;path/./to//file.txt&#39;)</span>
+<span class="sd">    &#39;path/to/file.txt&#39;</span>
+<span class="sd">    &gt;&gt;&gt; clean(&#39;path with spaces&#39;)</span>
+<span class="sd">    &#39;path_with_spaces&#39;</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path_string : str</span>
+<span class="sd">        File path to clean</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        Normalized path string</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Convert Path objects to strings to avoid AttributeError</span>
+    <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">path_string</span><span class="p">,</span> <span class="s2">&quot;__fspath__&quot;</span><span class="p">):</span>  <span class="c1"># Check if it&#39;s a path-like object</span>
+        <span class="n">path_string</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">path_string</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path_string</span><span class="p">:</span>
+        <span class="k">return</span> <span class="s2">&quot;&quot;</span>
+
+    <span class="c1"># Remember if path ends with a slash (indicating a directory)</span>
+    <span class="n">is_directory</span> <span class="o">=</span> <span class="n">path_string</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Replace spaces with underscores</span>
+    <span class="n">path_string</span> <span class="o">=</span> <span class="n">path_string</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">,</span> <span class="s2">&quot;_&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Use normpath to handle ../ and ./ references</span>
+    <span class="n">cleaned_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">normpath</span><span class="p">(</span><span class="n">path_string</span><span class="p">)</span>
+
+    <span class="c1"># Replace multiple slashes with single slash</span>
+    <span class="k">while</span> <span class="s2">&quot;//&quot;</span> <span class="ow">in</span> <span class="n">cleaned_path</span><span class="p">:</span>
+        <span class="n">cleaned_path</span> <span class="o">=</span> <span class="n">cleaned_path</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;//&quot;</span><span class="p">,</span> <span class="s2">&quot;/&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Restore trailing slash if it was a directory</span>
+    <span class="k">if</span> <span class="n">is_directory</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">cleaned_path</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">):</span>
+        <span class="n">cleaned_path</span> <span class="o">+=</span> <span class="s2">&quot;/&quot;</span>
+
+    <span class="k">return</span> <span class="n">cleaned_path</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+      jQuery(function () {
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+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_path/_find.html b/src/scitex/_sphinx_html/_modules/scitex_path/_find.html
new file mode 100644
index 000000000..83915db6d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_path/_find.html
@@ -0,0 +1,776 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_path._find &mdash; SciTeX v0.0.0</title>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._find</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_path._find</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-01-08 02:00:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/path/_find.py</span>
+
+<span class="sd">&quot;&quot;&quot;File and directory finding utilities.&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">fnmatch</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+
+<div class="viewcode-block" id="find_git_root">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.find_git_root">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">find_git_root</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Find the root directory of the current git repository.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        Path to the git repository root.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">git</span>
+
+    <span class="n">repo</span> <span class="o">=</span> <span class="n">git</span><span class="o">.</span><span class="n">Repo</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="n">search_parent_directories</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">repo</span><span class="o">.</span><span class="n">working_tree_dir</span></div>
+
+
+
+<div class="viewcode-block" id="find_dir">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.find_dir">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">find_dir</span><span class="p">(</span><span class="n">root_dir</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span> <span class="n">exp</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]])</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Find directories matching pattern.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_find</span><span class="p">(</span><span class="n">root_dir</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;d&quot;</span><span class="p">,</span> <span class="n">exp</span><span class="o">=</span><span class="n">exp</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="find_file">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.find_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">find_file</span><span class="p">(</span><span class="n">root_dir</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span> <span class="n">exp</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]])</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Find files matching pattern.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_find</span><span class="p">(</span><span class="n">root_dir</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;f&quot;</span><span class="p">,</span> <span class="n">exp</span><span class="o">=</span><span class="n">exp</span><span class="p">)</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_find</span><span class="p">(</span>
+    <span class="n">rootdir</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="nb">type</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;f&quot;</span><span class="p">,</span>
+    <span class="n">exp</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="s2">&quot;*&quot;</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Mimics the Unix find command.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    rootdir : str or Path</span>
+<span class="sd">        Root directory to search in.</span>
+<span class="sd">    type : str, optional</span>
+<span class="sd">        &#39;f&#39; for files, &#39;d&#39; for directories, None for both.</span>
+<span class="sd">    exp : str or list of str</span>
+<span class="sd">        Pattern(s) to match.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    list of str</span>
+<span class="sd">        Matching paths.</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; _find(&#39;/path/to/search&#39;, &quot;f&quot;, &quot;*.txt&quot;)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">rootdir</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">rootdir</span><span class="p">)</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">exp</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="n">exp</span> <span class="o">=</span> <span class="p">[</span><span class="n">exp</span><span class="p">]</span>
+
+    <span class="n">exclude_keys</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;/lib/&quot;</span><span class="p">,</span> <span class="s2">&quot;/env/&quot;</span><span class="p">,</span> <span class="s2">&quot;/build/&quot;</span><span class="p">]</span>
+    <span class="n">matches</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">for</span> <span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">rootdir</span><span class="p">):</span>
+        <span class="n">candidates</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">if</span> <span class="nb">type</span> <span class="ow">in</span> <span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="s2">&quot;f&quot;</span><span class="p">):</span>
+            <span class="n">candidates</span><span class="o">.</span><span class="n">extend</span><span class="p">((</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">name</span><span class="p">),</span> <span class="s2">&quot;f&quot;</span><span class="p">)</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">filenames</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">type</span> <span class="ow">in</span> <span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="s2">&quot;d&quot;</span><span class="p">):</span>
+            <span class="n">candidates</span><span class="o">.</span><span class="n">extend</span><span class="p">((</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">name</span><span class="p">),</span> <span class="s2">&quot;d&quot;</span><span class="p">)</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">dirnames</span><span class="p">)</span>
+
+        <span class="k">for</span> <span class="n">full_path</span><span class="p">,</span> <span class="n">kind</span> <span class="ow">in</span> <span class="n">candidates</span><span class="p">:</span>
+            <span class="c1"># Verify type (tests mock os.path.isfile / isdir)</span>
+            <span class="k">if</span> <span class="n">kind</span> <span class="o">==</span> <span class="s2">&quot;f&quot;</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isfile</span><span class="p">(</span><span class="n">full_path</span><span class="p">):</span>
+                <span class="k">continue</span>
+            <span class="k">if</span> <span class="n">kind</span> <span class="o">==</span> <span class="s2">&quot;d&quot;</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isdir</span><span class="p">(</span><span class="n">full_path</span><span class="p">):</span>
+                <span class="k">continue</span>
+
+            <span class="n">name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">full_path</span><span class="p">)</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="nb">any</span><span class="p">(</span><span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">_exp</span><span class="p">)</span> <span class="k">for</span> <span class="n">_exp</span> <span class="ow">in</span> <span class="n">exp</span> <span class="k">if</span> <span class="n">_exp</span><span class="p">):</span>
+                <span class="k">continue</span>
+
+            <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="n">ek</span> <span class="ow">in</span> <span class="n">full_path</span> <span class="k">for</span> <span class="n">ek</span> <span class="ow">in</span> <span class="n">exclude_keys</span><span class="p">):</span>
+                <span class="k">continue</span>
+
+            <span class="k">if</span> <span class="n">full_path</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">matches</span><span class="p">:</span>
+                <span class="n">matches</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">full_path</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">matches</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_path/_get_module_path.html b/src/scitex/_sphinx_html/_modules/scitex_path/_get_module_path.html
new file mode 100644
index 000000000..74be66048
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_path/_get_module_path.html
@@ -0,0 +1,730 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._get_module_path</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_path._get_module_path</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-01-08 02:00:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/path/_get_module_path.py</span>
+
+<span class="sd">&quot;&quot;&quot;Module path utilities.&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">importlib.util</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+
+
+<div class="viewcode-block" id="get_data_path_from_a_package">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.get_data_path_from_a_package">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_data_path_from_a_package</span><span class="p">(</span><span class="n">package_str</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">resource</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get the path to a data file within a package.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    package_str : str</span>
+<span class="sd">        The name of the package as a string.</span>
+<span class="sd">    resource : str</span>
+<span class="sd">        The name of the resource file within the package&#39;s data directory.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Path</span>
+<span class="sd">        The full path to the resource file.</span>
+
+<span class="sd">    Raises</span>
+<span class="sd">    ------</span>
+<span class="sd">    ImportError</span>
+<span class="sd">        If the specified package cannot be found.</span>
+<span class="sd">    FileNotFoundError</span>
+<span class="sd">        If the resource file does not exist in the package&#39;s data directory.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">spec</span> <span class="o">=</span> <span class="n">importlib</span><span class="o">.</span><span class="n">util</span><span class="o">.</span><span class="n">find_spec</span><span class="p">(</span><span class="n">package_str</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">spec</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Package &#39;</span><span class="si">{</span><span class="n">package_str</span><span class="si">}</span><span class="s2">&#39; not found&quot;</span><span class="p">)</span>
+
+    <span class="n">origin</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">spec</span><span class="o">.</span><span class="n">origin</span><span class="p">)</span>
+    <span class="c1"># Walk up until we reach the `src/` layout boundary, then pick the</span>
+    <span class="c1"># sibling `data/` directory at the project root. Falls back to the</span>
+    <span class="c1"># filesystem root if no `src/` parent exists.</span>
+    <span class="n">data_dir</span> <span class="o">=</span> <span class="n">origin</span><span class="o">.</span><span class="n">parents</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+    <span class="k">while</span> <span class="n">data_dir</span><span class="o">.</span><span class="n">name</span> <span class="o">!=</span> <span class="s2">&quot;src&quot;</span> <span class="ow">and</span> <span class="n">data_dir</span> <span class="o">!=</span> <span class="n">data_dir</span><span class="o">.</span><span class="n">parent</span><span class="p">:</span>
+        <span class="n">data_dir</span> <span class="o">=</span> <span class="n">data_dir</span><span class="o">.</span><span class="n">parent</span>
+    <span class="n">data_dir</span> <span class="o">=</span> <span class="n">data_dir</span><span class="o">.</span><span class="n">parent</span> <span class="o">/</span> <span class="s2">&quot;data&quot;</span>
+
+    <span class="n">resource_path</span> <span class="o">=</span> <span class="n">data_dir</span> <span class="o">/</span> <span class="n">resource</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">resource_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">raise</span> <span class="ne">FileNotFoundError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Resource &#39;</span><span class="si">{</span><span class="n">resource</span><span class="si">}</span><span class="s2">&#39; not found in package &#39;</span><span class="si">{</span><span class="n">package_str</span><span class="si">}</span><span class="s2">&#39;&quot;</span>
+        <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">resource_path</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_path/_getsize.html b/src/scitex/_sphinx_html/_modules/scitex_path/_getsize.html
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--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_path/_getsize.html
@@ -0,0 +1,711 @@
+
+
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+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
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+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._getsize</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_path._getsize</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-01-08 02:00:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: scitex-path/src/scitex_path/_getsize.py</span>
+
+<span class="sd">&quot;&quot;&quot;File size utilities.&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">math</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Union</span>
+
+
+<div class="viewcode-block" id="getsize">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.getsize">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">getsize</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get file size in bytes.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str or Path</span>
+<span class="sd">        Path to file.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    int or float</span>
+<span class="sd">        File size in bytes, or math.nan if file doesn&#39;t exist.</span>
+
+<span class="sd">    Raises</span>
+<span class="sd">    ------</span>
+<span class="sd">    PermissionError</span>
+<span class="sd">        If the file cannot be accessed due to permissions.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path_str</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">fspath</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">path_str</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">getsize</span><span class="p">(</span><span class="n">path_str</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">math</span><span class="o">.</span><span class="n">nan</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_path/_mk_spath.html b/src/scitex/_sphinx_html/_modules/scitex_path/_mk_spath.html
new file mode 100644
index 000000000..00ee7bac8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_path/_mk_spath.html
@@ -0,0 +1,721 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
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+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._mk_spath</li>
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+      </li>
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+             
+  <h1>Source code for scitex_path._mk_spath</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-01-08 02:00:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/path/_mk_spath.py</span>
+
+<span class="sd">&quot;&quot;&quot;Save path creation utilities.&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">inspect</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Union</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._split</span><span class="w"> </span><span class="kn">import</span> <span class="n">split</span>
+
+
+<div class="viewcode-block" id="mk_spath">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.mk_spath">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">mk_spath</span><span class="p">(</span><span class="n">sfname</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span> <span class="n">makedirs</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Create a save path based on the calling script&#39;s location.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    sfname : str or Path</span>
+<span class="sd">        The name of the file to be saved.</span>
+<span class="sd">    makedirs : bool, optional</span>
+<span class="sd">        If True, create the directory structure for the save path.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        The full save path for the file.</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; spath = mk_spath(&#39;output.txt&#39;, makedirs=True)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">caller_file</span> <span class="o">=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">stack</span><span class="p">()[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">filename</span>
+    <span class="k">if</span> <span class="s2">&quot;ipython&quot;</span> <span class="ow">in</span> <span class="n">caller_file</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span>
+        <span class="n">caller_file</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;/tmp/fake-</span><span class="si">{</span><span class="n">os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="s1">&#39;USER&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">.py&quot;</span>
+
+    <span class="n">sdir</span><span class="p">,</span> <span class="n">sfname_mod</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">split</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
+    <span class="n">spath</span> <span class="o">=</span> <span class="n">sdir</span> <span class="o">+</span> <span class="n">sfname_mod</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">sfname</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">makedirs</span><span class="p">:</span>
+        <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">spath</span><span class="p">),</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">spath</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_path/_split.html b/src/scitex/_sphinx_html/_modules/scitex_path/_split.html
new file mode 100644
index 000000000..03ec2ed38
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_path/_split.html
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
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+
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._split</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_path._split</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-01-08 02:00:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/path/_split.py</span>
+
+<span class="sd">&quot;&quot;&quot;Path splitting utilities.&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">Union</span>
+
+
+<div class="viewcode-block" id="split">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.split">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">split</span><span class="p">(</span><span class="n">fpath</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">,</span> <span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Split a file path into directory, filename, and extension.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    fpath : str or Path</span>
+<span class="sd">        File path to split.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    tuple of (str, str, str)</span>
+<span class="sd">        (directory with trailing slash, filename without extension, extension)</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; dirname, fname, ext = split(&#39;/path/to/file.txt&#39;)</span>
+<span class="sd">    &gt;&gt;&gt; dirname</span>
+<span class="sd">    &#39;/path/to/&#39;</span>
+<span class="sd">    &gt;&gt;&gt; fname</span>
+<span class="sd">    &#39;file&#39;</span>
+<span class="sd">    &gt;&gt;&gt; ext</span>
+<span class="sd">    &#39;.txt&#39;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">fpath</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">fspath</span><span class="p">(</span><span class="n">fpath</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fpath</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="k">else</span> <span class="n">fpath</span>
+    <span class="n">dirname</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">fpath</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span>
+    <span class="n">basename</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">fpath</span><span class="p">)</span>
+    <span class="n">fname</span><span class="p">,</span> <span class="n">ext</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">basename</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">dirname</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">ext</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_path/_symlink.html b/src/scitex/_sphinx_html/_modules/scitex_path/_symlink.html
new file mode 100644
index 000000000..bb672581c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_path/_symlink.html
@@ -0,0 +1,990 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_path._symlink &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._symlink</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_path._symlink</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Timestamp: &quot;2025-09-16 15:11:33 (ywatanabe)&quot;</span>
+<span class="c1"># File: scitex-path/src/scitex_path/_symlink.py</span>
+<span class="c1"># ----------------------------------------</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+<span class="n">__FILE__</span> <span class="o">=</span> <span class="vm">__file__</span>
+<span class="n">__DIR__</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">__FILE__</span><span class="p">)</span>
+<span class="c1"># ----------------------------------------</span>
+
+<span class="sd">&quot;&quot;&quot;Symlink creation and management utilities.&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+
+<div class="viewcode-block" id="symlink">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.symlink">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">symlink</span><span class="p">(</span>
+    <span class="n">src</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">dst</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">overwrite</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">target_is_directory</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">bool</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">relative</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Create a symbolic link pointing to src named dst.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        src: Source path (target of the symlink)</span>
+<span class="sd">        dst: Destination path (the symlink to create)</span>
+<span class="sd">        overwrite: If True, remove existing dst before creating symlink</span>
+<span class="sd">        target_is_directory: On Windows, specify if target is directory (auto-detected if None)</span>
+<span class="sd">        relative: If True, create relative symlink instead of absolute</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Path object of the created symlink</span>
+
+<span class="sd">    Raises:</span>
+<span class="sd">        FileExistsError: If dst exists and overwrite=False</span>
+<span class="sd">        FileNotFoundError: If src doesn&#39;t exist</span>
+<span class="sd">        OSError: If symlink creation fails</span>
+
+<span class="sd">    Examples:</span>
+<span class="sd">        &gt;&gt;&gt; from scitex_path import symlink</span>
+<span class="sd">        &gt;&gt;&gt; # Create absolute symlink</span>
+<span class="sd">        &gt;&gt;&gt; symlink(&quot;/path/to/source&quot;, &quot;/path/to/link&quot;)</span>
+
+<span class="sd">        &gt;&gt;&gt; # Create relative symlink</span>
+<span class="sd">        &gt;&gt;&gt; symlink(&quot;../source&quot;, &quot;link&quot;, relative=True)</span>
+
+<span class="sd">        &gt;&gt;&gt; # Overwrite existing symlink</span>
+<span class="sd">        &gt;&gt;&gt; symlink(&quot;/path/to/new_source&quot;, &quot;/path/to/link&quot;, overwrite=True)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">src_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">src</span><span class="p">)</span>
+    <span class="n">dst_path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">dst</span><span class="p">)</span>
+
+    <span class="c1"># Note: We allow creating symlinks to non-existent targets</span>
+    <span class="c1"># This is valid in Unix/Linux and useful for testing</span>
+
+    <span class="c1"># Handle existing destination</span>
+    <span class="k">if</span> <span class="n">dst_path</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">or</span> <span class="n">dst_path</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">():</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">overwrite</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">FileExistsError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Destination already exists: </span><span class="si">{</span><span class="n">dst_path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># Remove existing file/symlink</span>
+            <span class="k">if</span> <span class="n">dst_path</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">():</span>
+                <span class="n">dst_path</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
+            <span class="k">elif</span> <span class="n">dst_path</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+                <span class="n">dst_path</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
+            <span class="k">elif</span> <span class="n">dst_path</span><span class="o">.</span><span class="n">is_dir</span><span class="p">():</span>
+                <span class="kn">import</span><span class="w"> </span><span class="nn">shutil</span>
+
+                <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="n">dst_path</span><span class="p">)</span>
+
+    <span class="c1"># Create parent directory if needed</span>
+    <span class="n">dst_path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="c1"># Determine if target is directory (for Windows)</span>
+    <span class="k">if</span> <span class="n">target_is_directory</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">src_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="n">target_is_directory</span> <span class="o">=</span> <span class="n">src_path</span><span class="o">.</span><span class="n">is_dir</span><span class="p">()</span>
+
+    <span class="c1"># Create symlink</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">relative</span><span class="p">:</span>
+            <span class="c1"># Calculate relative path from dst to src</span>
+            <span class="k">if</span> <span class="n">src_path</span><span class="o">.</span><span class="n">is_absolute</span><span class="p">():</span>
+                <span class="c1"># src is absolute, calculate relative from dst</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="n">rel_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">dst_path</span><span class="o">.</span><span class="n">parent</span><span class="p">)</span>
+                    <span class="n">src_for_link</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">rel_path</span><span class="p">)</span>
+                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+                    <span class="c1"># Can&#39;t create relative path (e.g., different drives on Windows)</span>
+                    <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span>
+                        <span class="sa">f</span><span class="s2">&quot;Cannot create relative path from </span><span class="si">{</span><span class="n">dst_path</span><span class="si">}</span><span class="s2"> to </span><span class="si">{</span><span class="n">src_path</span><span class="si">}</span><span class="s2">, using absolute&quot;</span>
+                    <span class="p">)</span>
+                    <span class="n">src_for_link</span> <span class="o">=</span> <span class="n">src_path</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="c1"># Both paths are relative, need to resolve them first</span>
+                <span class="c1"># to calculate the correct relative path</span>
+                <span class="n">src_abs</span> <span class="o">=</span> <span class="n">src_path</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+                <span class="n">dst_parent_abs</span> <span class="o">=</span> <span class="n">dst_path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="n">rel_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">src_abs</span><span class="p">,</span> <span class="n">dst_parent_abs</span><span class="p">)</span>
+                    <span class="n">src_for_link</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">rel_path</span><span class="p">)</span>
+                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+                    <span class="c1"># Can&#39;t create relative path</span>
+                    <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span>
+                        <span class="sa">f</span><span class="s2">&quot;Cannot create relative path from </span><span class="si">{</span><span class="n">dst_path</span><span class="si">}</span><span class="s2"> to </span><span class="si">{</span><span class="n">src_path</span><span class="si">}</span><span class="s2">&quot;</span>
+                    <span class="p">)</span>
+                    <span class="n">src_for_link</span> <span class="o">=</span> <span class="n">src_path</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">src_for_link</span> <span class="o">=</span> <span class="n">src_path</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span>
+
+        <span class="n">dst_path</span><span class="o">.</span><span class="n">symlink_to</span><span class="p">(</span><span class="n">src_for_link</span><span class="p">,</span> <span class="n">target_is_directory</span><span class="o">=</span><span class="n">target_is_directory</span><span class="p">)</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Created symlink: </span><span class="si">{</span><span class="n">dst_path</span><span class="si">}</span><span class="s2"> -&gt; </span><span class="si">{</span><span class="n">src_for_link</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Failed to create symlink from </span><span class="si">{</span><span class="n">dst_path</span><span class="si">}</span><span class="s2"> to </span><span class="si">{</span><span class="n">src_for_link</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">dst_path</span></div>
+
+
+
+<div class="viewcode-block" id="is_symlink">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.is_symlink">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">is_symlink</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Check if a path is a symbolic link.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        path: Path to check</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        True if path is a symlink, False otherwise</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="readlink">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.readlink">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">readlink</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Return the path to which the symbolic link points.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        path: Symlink path to read</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Path object pointing to the symlink target</span>
+
+<span class="sd">    Raises:</span>
+<span class="sd">        OSError: If path is not a symlink</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">():</span>
+        <span class="k">raise</span> <span class="ne">OSError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Path is not a symbolic link: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">readlink</span><span class="p">(</span><span class="n">path</span><span class="p">))</span></div>
+
+
+
+<div class="viewcode-block" id="resolve_symlinks">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.resolve_symlinks">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">resolve_symlinks</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Resolve all symbolic links in a path.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        path: Path potentially containing symlinks</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Fully resolved absolute path</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="create_relative_symlink">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.create_relative_symlink">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">create_relative_symlink</span><span class="p">(</span>
+    <span class="n">src</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span> <span class="n">dst</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span> <span class="n">overwrite</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Create a relative symbolic link.</span>
+
+<span class="sd">    This is a convenience wrapper around symlink() with relative=True.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        src: Source path (target of the symlink)</span>
+<span class="sd">        dst: Destination path (the symlink to create)</span>
+<span class="sd">        overwrite: If True, remove existing dst before creating symlink</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Path object of the created symlink</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">symlink</span><span class="p">(</span><span class="n">src</span><span class="p">,</span> <span class="n">dst</span><span class="p">,</span> <span class="n">overwrite</span><span class="o">=</span><span class="n">overwrite</span><span class="p">,</span> <span class="n">relative</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="unlink_symlink">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.unlink_symlink">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">unlink_symlink</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span> <span class="n">missing_ok</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Remove a symbolic link.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        path: Symlink to remove</span>
+<span class="sd">        missing_ok: If True, don&#39;t raise error if symlink doesn&#39;t exist</span>
+
+<span class="sd">    Raises:</span>
+<span class="sd">        FileNotFoundError: If symlink doesn&#39;t exist and missing_ok=False</span>
+<span class="sd">        OSError: If path is not a symlink</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">missing_ok</span><span class="p">:</span>
+            <span class="k">return</span>
+        <span class="k">raise</span> <span class="ne">FileNotFoundError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Symlink does not exist: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">path</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">():</span>
+        <span class="k">raise</span> <span class="ne">OSError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Path is not a symbolic link: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="n">path</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="list_symlinks">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.list_symlinks">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">list_symlinks</span><span class="p">(</span><span class="n">directory</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span> <span class="n">recursive</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="n">Path</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    List all symbolic links in a directory.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        directory: Directory to search</span>
+<span class="sd">        recursive: If True, search recursively</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        List of Path objects for all symlinks found</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">directory</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">directory</span><span class="p">)</span>
+    <span class="n">symlinks</span> <span class="o">=</span> <span class="p">[]</span>
+
+    <span class="k">if</span> <span class="n">recursive</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">directory</span><span class="o">.</span><span class="n">rglob</span><span class="p">(</span><span class="s2">&quot;*&quot;</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">path</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">():</span>
+                <span class="n">symlinks</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">directory</span><span class="o">.</span><span class="n">iterdir</span><span class="p">():</span>
+            <span class="k">if</span> <span class="n">path</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">():</span>
+                <span class="n">symlinks</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">symlinks</span></div>
+
+
+
+<div class="viewcode-block" id="fix_broken_symlinks">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.fix_broken_symlinks">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">fix_broken_symlinks</span><span class="p">(</span>
+    <span class="n">directory</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">],</span>
+    <span class="n">recursive</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">remove</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">new_target</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Path</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Find and optionally fix broken symbolic links.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        directory: Directory to search</span>
+<span class="sd">        recursive: If True, search recursively</span>
+<span class="sd">        remove: If True, remove broken symlinks</span>
+<span class="sd">        new_target: If provided, repoint broken symlinks to this target</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Dictionary with &#39;found&#39;, &#39;fixed&#39;, and &#39;removed&#39; lists of paths</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">directory</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">directory</span><span class="p">)</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;found&quot;</span><span class="p">:</span> <span class="p">[],</span> <span class="s2">&quot;fixed&quot;</span><span class="p">:</span> <span class="p">[],</span> <span class="s2">&quot;removed&quot;</span><span class="p">:</span> <span class="p">[]}</span>
+
+    <span class="n">symlinks</span> <span class="o">=</span> <span class="n">list_symlinks</span><span class="p">(</span><span class="n">directory</span><span class="p">,</span> <span class="n">recursive</span><span class="o">=</span><span class="n">recursive</span><span class="p">)</span>
+
+    <span class="k">for</span> <span class="n">link</span> <span class="ow">in</span> <span class="n">symlinks</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="c1"># Check if target exists</span>
+            <span class="n">target</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">readlink</span><span class="p">(</span><span class="n">link</span><span class="p">))</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">link</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">joinpath</span><span class="p">(</span><span class="n">target</span><span class="p">)</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">target</span><span class="o">.</span><span class="n">is_absolute</span><span class="p">():</span>
+                <span class="c1"># Relative link with non-existent target</span>
+                <span class="n">result</span><span class="p">[</span><span class="s2">&quot;found&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">link</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="n">target</span><span class="o">.</span><span class="n">is_absolute</span><span class="p">()</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">target</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+                <span class="c1"># Absolute link with non-existent target</span>
+                <span class="n">result</span><span class="p">[</span><span class="s2">&quot;found&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">link</span><span class="p">)</span>
+        <span class="k">except</span> <span class="p">(</span><span class="ne">OSError</span><span class="p">,</span> <span class="ne">ValueError</span><span class="p">):</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;found&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">link</span><span class="p">)</span>
+
+    <span class="c1"># Fix or remove broken symlinks</span>
+    <span class="k">for</span> <span class="n">link</span> <span class="ow">in</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;found&quot;</span><span class="p">]:</span>
+        <span class="k">if</span> <span class="n">remove</span><span class="p">:</span>
+            <span class="n">link</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;removed&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">link</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="n">new_target</span><span class="p">:</span>
+            <span class="n">link</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
+            <span class="n">symlink</span><span class="p">(</span><span class="n">new_target</span><span class="p">,</span> <span class="n">link</span><span class="p">)</span>
+            <span class="n">result</span><span class="p">[</span><span class="s2">&quot;fixed&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">link</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">result</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+   
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._this_path</li>
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+      </li>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_path._this_path</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Timestamp: &quot;2026-01-08 02:00:00 (ywatanabe)&quot;</span>
+<span class="c1"># File: /home/ywatanabe/proj/scitex-code/src/scitex/path/_this_path.py</span>
+
+<span class="sd">&quot;&quot;&quot;Get current file path utilities.&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">inspect</span>
+
+
+<div class="viewcode-block" id="this_path">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.this_path">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">this_path</span><span class="p">(</span><span class="n">ipython_fake_path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;/tmp/fake.py&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get the path of the calling script.</span>
+
+<span class="sd">    Note</span>
+<span class="sd">    ----</span>
+<span class="sd">    This function historically captures the caller&#39;s filename via</span>
+<span class="sd">    ``inspect.stack()[1]`` but then returns this module&#39;s ``__file__``.</span>
+<span class="sd">    The tests codify that legacy behavior; do not change without</span>
+<span class="sd">    updating callers.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">THIS_FILE</span> <span class="o">=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">stack</span><span class="p">()[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">filename</span>  <span class="c1"># noqa: F841 - kept for compatibility</span>
+    <span class="k">if</span> <span class="s2">&quot;ipython&quot;</span> <span class="ow">in</span> <span class="p">(</span><span class="n">THIS_FILE</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span>
+        <span class="n">THIS_FILE</span> <span class="o">=</span> <span class="n">ipython_fake_path</span>  <span class="c1"># noqa: F841</span>
+    <span class="k">return</span> <span class="vm">__file__</span></div>
+
+
+
+<span class="n">get_this_path</span> <span class="o">=</span> <span class="n">this_path</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_path/_version.html b/src/scitex/_sphinx_html/_modules/scitex_path/_version.html
new file mode 100644
index 000000000..03e52d21a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_path/_version.html
@@ -0,0 +1,785 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_path._version &mdash; SciTeX v0.0.0</title>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_path._version</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_path._version</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Time-stamp: &quot;2024-11-02 20:48:24 (ywatanabe)&quot;</span>
+<span class="c1"># File: scitex-path/src/scitex_path/_version.py</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">glob</span><span class="w"> </span><span class="kn">import</span> <span class="n">glob</span>
+
+
+<div class="viewcode-block" id="find_latest">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.find_latest">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">find_latest</span><span class="p">(</span><span class="n">dirname</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">ext</span><span class="p">,</span> <span class="n">version_prefix</span><span class="o">=</span><span class="s2">&quot;_v&quot;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Find the latest versioned file in a directory.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    dirname : str</span>
+<span class="sd">        Directory to search in.</span>
+<span class="sd">    fname : str</span>
+<span class="sd">        Base filename without version number or extension.</span>
+<span class="sd">    ext : str</span>
+<span class="sd">        File extension including the dot (e.g., &#39;.txt&#39;).</span>
+<span class="sd">    version_prefix : str, optional</span>
+<span class="sd">        Prefix before the version number. Default is &#39;_v&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str or None</span>
+<span class="sd">        Path to the latest versioned file, or None if not found.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">version_pattern</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span>
+        <span class="sa">rf</span><span class="s2">&quot;(</span><span class="si">{</span><span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span><span class="si">}{</span><span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">version_prefix</span><span class="p">)</span><span class="si">}</span><span class="s2">)(\d+)(</span><span class="si">{</span><span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">ext</span><span class="p">)</span><span class="si">}</span><span class="s2">)$&quot;</span>
+    <span class="p">)</span>
+
+    <span class="n">glob_pattern</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">dirname</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">fname</span><span class="si">}{</span><span class="n">version_prefix</span><span class="si">}</span><span class="s2">*</span><span class="si">{</span><span class="n">ext</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="n">files</span> <span class="o">=</span> <span class="n">glob</span><span class="p">(</span><span class="n">glob_pattern</span><span class="p">)</span>
+
+    <span class="n">highest_version</span> <span class="o">=</span> <span class="mi">0</span>
+    <span class="n">latest_file</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+        <span class="n">filename</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
+        <span class="n">match</span> <span class="o">=</span> <span class="n">version_pattern</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+            <span class="n">version_num</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">2</span><span class="p">))</span>
+            <span class="k">if</span> <span class="n">version_num</span> <span class="o">&gt;</span> <span class="n">highest_version</span><span class="p">:</span>
+                <span class="n">highest_version</span> <span class="o">=</span> <span class="n">version_num</span>
+                <span class="n">latest_file</span> <span class="o">=</span> <span class="n">file</span>
+
+    <span class="k">return</span> <span class="n">latest_file</span></div>
+
+
+
+<div class="viewcode-block" id="increment_version">
+<a class="viewcode-back" href="../../source/api/path.html#scitex.path.increment_version">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">increment_version</span><span class="p">(</span><span class="n">dirname</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">ext</span><span class="p">,</span> <span class="n">version_prefix</span><span class="o">=</span><span class="s2">&quot;_v&quot;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate the next version of a filename based on existing versioned files.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    dirname : str</span>
+<span class="sd">        Directory to search in.</span>
+<span class="sd">    fname : str</span>
+<span class="sd">        Base filename without version number or extension.</span>
+<span class="sd">    ext : str</span>
+<span class="sd">        File extension including the dot (e.g., &#39;.txt&#39;).</span>
+<span class="sd">    version_prefix : str, optional</span>
+<span class="sd">        Prefix before the version number. Default is &#39;_v&#39;.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        Full path for the next version of the file.</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; increment_version(&#39;/path/to/dir&#39;, &#39;myfile&#39;, &#39;.txt&#39;)</span>
+<span class="sd">    &#39;/path/to/dir/myfile_v001.txt&#39;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">version_pattern</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span>
+        <span class="sa">rf</span><span class="s2">&quot;(</span><span class="si">{</span><span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span><span class="si">}{</span><span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">version_prefix</span><span class="p">)</span><span class="si">}</span><span class="s2">)(\d+)(</span><span class="si">{</span><span class="n">re</span><span class="o">.</span><span class="n">escape</span><span class="p">(</span><span class="n">ext</span><span class="p">)</span><span class="si">}</span><span class="s2">)$&quot;</span>
+    <span class="p">)</span>
+
+    <span class="n">glob_pattern</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">dirname</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">fname</span><span class="si">}{</span><span class="n">version_prefix</span><span class="si">}</span><span class="s2">*</span><span class="si">{</span><span class="n">ext</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="n">files</span> <span class="o">=</span> <span class="n">glob</span><span class="p">(</span><span class="n">glob_pattern</span><span class="p">)</span>
+
+    <span class="n">highest_version</span> <span class="o">=</span> <span class="mi">0</span>
+    <span class="n">base</span><span class="p">,</span> <span class="n">suffix</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span>
+
+    <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+        <span class="n">filename</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
+        <span class="n">match</span> <span class="o">=</span> <span class="n">version_pattern</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+            <span class="n">base</span><span class="p">,</span> <span class="n">version_str</span><span class="p">,</span> <span class="n">suffix</span> <span class="o">=</span> <span class="n">match</span><span class="o">.</span><span class="n">groups</span><span class="p">()</span>
+            <span class="n">version_num</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">version_str</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">version_num</span> <span class="o">&gt;</span> <span class="n">highest_version</span><span class="p">:</span>
+                <span class="n">highest_version</span> <span class="o">=</span> <span class="n">version_num</span>
+
+    <span class="k">if</span> <span class="n">base</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">suffix</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">base</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">fname</span><span class="si">}{</span><span class="n">version_prefix</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="n">suffix</span> <span class="o">=</span> <span class="n">ext</span>
+        <span class="n">highest_version</span> <span class="o">=</span> <span class="mi">0</span>
+
+    <span class="n">next_version_number</span> <span class="o">=</span> <span class="n">highest_version</span> <span class="o">+</span> <span class="mi">1</span>
+    <span class="n">next_version_str</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">base</span><span class="si">}{</span><span class="n">next_version_number</span><span class="si">:</span><span class="s2">03d</span><span class="si">}{</span><span class="n">suffix</span><span class="si">}</span><span class="s2">&quot;</span>
+
+    <span class="n">next_filepath</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">dirname</span><span class="p">,</span> <span class="n">next_version_str</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">next_filepath</span></div>
+
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_repro.html b/src/scitex/_sphinx_html/_modules/scitex_repro.html
new file mode 100644
index 000000000..f514262b7
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@@ -0,0 +1,751 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+  <meta charset="utf-8" />
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+  <title>scitex_repro &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
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+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_repro</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_repro</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">scitex-repro — Reproducibility utilities for scientific computing.</span>
+
+<span class="sd">Provides tools for reproducible scientific computing:</span>
+<span class="sd">- Random state management (RandomStateManager)</span>
+<span class="sd">- ID generation (gen_ID)</span>
+<span class="sd">- Timestamp generation (gen_timestamp)</span>
+<span class="sd">- Array hashing (hash_array)</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="c1"># ID and timestamp utilities</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._gen_ID</span><span class="w"> </span><span class="kn">import</span> <span class="n">gen_ID</span><span class="p">,</span> <span class="n">gen_id</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._gen_timestamp</span><span class="w"> </span><span class="kn">import</span> <span class="n">gen_timestamp</span><span class="p">,</span> <span class="n">timestamp</span>
+
+<span class="c1"># Hash utilities</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._hash_array</span><span class="w"> </span><span class="kn">import</span> <span class="n">hash_array</span>
+
+<span class="c1"># Random state management</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._RandomStateManager</span><span class="w"> </span><span class="kn">import</span> <span class="n">RandomStateManager</span><span class="p">,</span> <span class="n">get</span><span class="p">,</span> <span class="n">reset</span>
+
+
+<span class="c1"># Legacy function for backward compatibility</span>
+<div class="viewcode-block" id="fix_seeds">
+<a class="viewcode-back" href="../source/api/rng.html#scitex.repro.fix_seeds">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">fix_seeds</span><span class="p">(</span>
+    <span class="n">seed</span><span class="o">=</span><span class="mi">42</span><span class="p">,</span>
+    <span class="n">os</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="n">random</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="n">np</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="n">torch</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="n">tf</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="n">jax</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="o">**</span><span class="n">kwargs</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Deprecated: Use RandomStateManager instead.</span>
+
+<span class="sd">    This function maintains backward compatibility with the old fix_seeds API.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span>
+
+    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+        <span class="s2">&quot;fix_seeds is deprecated. Use scitex_repro.RandomStateManager instead.&quot;</span><span class="p">,</span>
+        <span class="ne">DeprecationWarning</span><span class="p">,</span>
+        <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="p">)</span>
+    <span class="k">return</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="n">seed</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">)</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;__version__&quot;</span><span class="p">,</span>
+    <span class="c1"># ID and timestamp utilities</span>
+    <span class="s2">&quot;gen_ID&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;gen_id&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;gen_timestamp&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;timestamp&quot;</span><span class="p">,</span>
+    <span class="c1"># Hash utilities</span>
+    <span class="s2">&quot;hash_array&quot;</span><span class="p">,</span>
+    <span class="c1"># Random state management</span>
+    <span class="s2">&quot;RandomStateManager&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;reset&quot;</span><span class="p">,</span>
+    <span class="c1"># Legacy (deprecated)</span>
+    <span class="s2">&quot;fix_seeds&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">importlib.metadata</span><span class="w"> </span><span class="kn">import</span> <span class="n">version</span> <span class="k">as</span> <span class="n">_v</span><span class="p">,</span> <span class="n">PackageNotFoundError</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">__version__</span> <span class="o">=</span> <span class="n">_v</span><span class="p">(</span><span class="s2">&quot;scitex-repro&quot;</span><span class="p">)</span>
+    <span class="k">except</span> <span class="n">PackageNotFoundError</span><span class="p">:</span>
+        <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0+local&quot;</span>
+    <span class="k">del</span> <span class="n">_v</span><span class="p">,</span> <span class="n">PackageNotFoundError</span>
+<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>  <span class="c1"># pragma: no cover — only on ancient Pythons</span>
+    <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0+local&quot;</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_repro/_RandomStateManager.html b/src/scitex/_sphinx_html/_modules/scitex_repro/_RandomStateManager.html
new file mode 100644
index 000000000..121d4fcd2
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_repro/_RandomStateManager.html
@@ -0,0 +1,1316 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_repro._RandomStateManager &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_repro.html">scitex_repro</a></li>
+      <li class="breadcrumb-item active">scitex_repro._RandomStateManager</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_repro._RandomStateManager</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># Extracted from scitex-python/src/scitex/repro/_RandomStateManager.py</span>
+<span class="c1"># ----------------------------------------</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+<span class="n">__FILE__</span> <span class="o">=</span> <span class="vm">__file__</span>
+<span class="n">__DIR__</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">__FILE__</span><span class="p">)</span>
+<span class="c1"># ----------------------------------------</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Clean, simple RandomStateManager for scientific reproducibility.</span>
+
+<span class="sd">Main API:</span>
+<span class="sd">    rng = RandomStateManager(seed=42)   # Create instance</span>
+<span class="sd">    gen = rng(&quot;name&quot;)                   # Get named generator</span>
+<span class="sd">    rng.verify(obj, &quot;name&quot;)             # Verify reproducibility</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">hashlib</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pickle</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">contextlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">contextmanager</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro._config</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_paths</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+<span class="c1"># Global singleton instance</span>
+<span class="n">_GLOBAL_INSTANCE</span> <span class="o">=</span> <span class="kc">None</span>
+
+
+<div class="viewcode-block" id="RandomStateManager">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">RandomStateManager</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Simple, robust random state manager for scientific computing.</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_repro import RandomStateManager</span>
+<span class="sd">    &gt;&gt;&gt;</span>
+<span class="sd">    &gt;&gt;&gt; # Method 1: Direct usage</span>
+<span class="sd">    &gt;&gt;&gt; rng = RandomStateManager(seed=42)</span>
+<span class="sd">    &gt;&gt;&gt; data = rng(&quot;data&quot;).random(100)</span>
+<span class="sd">    &gt;&gt;&gt;</span>
+<span class="sd">    &gt;&gt;&gt; # Verify reproducibility</span>
+<span class="sd">    &gt;&gt;&gt; rng.verify(data, &quot;my_data&quot;)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="RandomStateManager.__init__">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.__init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">seed</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">42</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Initialize with automatic module detection.&quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">seed</span> <span class="o">=</span> <span class="n">seed</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">verbose</span> <span class="o">=</span> <span class="n">verbose</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_generators</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_cache_dir</span> <span class="o">=</span> <span class="n">get_paths</span><span class="p">()</span><span class="o">.</span><span class="n">rng</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_cache_dir</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_jax_key</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># Initialize to None, will be set if jax is available</span>
+
+        <span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;RandomStateManager initialized with seed </span><span class="si">{</span><span class="n">seed</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+        <span class="c1"># Auto-fix all available seeds</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_auto_fix_seeds</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">)</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_auto_fix_seeds</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Automatically detect and fix ALL available random modules.&quot;&quot;&quot;</span>
+        <span class="c1"># Use instance verbose if not specified</span>
+        <span class="k">if</span> <span class="n">verbose</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">verbose</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">verbose</span>
+
+        <span class="c1"># OS environment</span>
+        <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;PYTHONHASHSEED&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+        <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;CUBLAS_WORKSPACE_CONFIG&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;:4096:8&quot;</span>
+
+        <span class="n">fixed_modules</span> <span class="o">=</span> <span class="p">[]</span>
+
+        <span class="c1"># Python random</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">random</span>
+
+            <span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+            <span class="n">fixed_modules</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;random&quot;</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+        <span class="c1"># NumPy</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+            <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+            <span class="c1"># Also set default_rng for new API</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_np</span> <span class="o">=</span> <span class="n">np</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_np_default_rng</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">default_rng</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+            <span class="n">fixed_modules</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;numpy&quot;</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_np</span> <span class="o">=</span> <span class="kc">None</span>
+
+        <span class="c1"># PyTorch</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">torch</span>
+
+            <span class="n">torch</span><span class="o">.</span><span class="n">manual_seed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">torch</span><span class="o">.</span><span class="n">cuda</span><span class="o">.</span><span class="n">is_available</span><span class="p">():</span>
+                <span class="n">torch</span><span class="o">.</span><span class="n">cuda</span><span class="o">.</span><span class="n">manual_seed_all</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+                <span class="n">torch</span><span class="o">.</span><span class="n">backends</span><span class="o">.</span><span class="n">cudnn</span><span class="o">.</span><span class="n">deterministic</span> <span class="o">=</span> <span class="kc">True</span>
+                <span class="n">torch</span><span class="o">.</span><span class="n">backends</span><span class="o">.</span><span class="n">cudnn</span><span class="o">.</span><span class="n">benchmark</span> <span class="o">=</span> <span class="kc">False</span>
+                <span class="n">fixed_modules</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;torch+cuda&quot;</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">fixed_modules</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;torch&quot;</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="c1"># ImportError: torch not installed (silent skip).</span>
+            <span class="c1"># Anything else (e.g. CUDA driver mismatch, broken install): log</span>
+            <span class="c1"># at debug and skip. Auto-seed is best-effort — a misconfigured</span>
+            <span class="c1"># ML runtime should never block @stx.session for non-ML users.</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;torch seed skipped: </span><span class="si">{</span><span class="nb">type</span><span class="p">(</span><span class="n">e</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+        <span class="c1"># TensorFlow</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">tensorflow</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">tf</span>
+
+            <span class="n">tf</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">set_seed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+            <span class="n">fixed_modules</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;tensorflow&quot;</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="c1"># ImportError: tf not installed.</span>
+            <span class="c1"># google.protobuf.runtime_version.VersionError: gencode/runtime</span>
+            <span class="c1">#   protobuf mismatch — surfaced once, then swallowed so the</span>
+            <span class="c1">#   rest of session.start can proceed.</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;tensorflow seed skipped: </span><span class="si">{</span><span class="nb">type</span><span class="p">(</span><span class="n">e</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+        <span class="c1"># JAX (deferred import to avoid circular imports)</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">jax</span>
+
+            <span class="bp">self</span><span class="o">.</span><span class="n">_jax_key</span> <span class="o">=</span> <span class="n">jax</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">PRNGKey</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+            <span class="n">fixed_modules</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;jax&quot;</span><span class="p">)</span>
+        <span class="k">except</span> <span class="p">(</span><span class="ne">ImportError</span><span class="p">,</span> <span class="ne">AttributeError</span><span class="p">,</span> <span class="ne">RuntimeError</span><span class="p">):</span>
+            <span class="c1"># ImportError: jax not installed</span>
+            <span class="c1"># AttributeError: circular import in jax._src.clusters</span>
+            <span class="c1"># RuntimeError: other jax initialization errors</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_jax_key</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="k">pass</span>
+
+        <span class="c1"># Importing TensorFlow / PyTorch during the framework-seeding pass</span>
+        <span class="c1"># can consume numpy global entropy on first init (lazy variable</span>
+        <span class="c1"># creation, autotune probes). The first RandomStateManager(seed=N)</span>
+        <span class="c1"># then leaves numpy at state(seed=N + K_init); a second call leaves</span>
+        <span class="c1"># it at state(seed=N) because TF/torch are already imported and</span>
+        <span class="c1"># K_init = 0. That asymmetry breaks `np.allclose(a, b)` across two</span>
+        <span class="c1"># construction sites in user code (see examples/quickstart.py).</span>
+        <span class="c1"># Re-seeding numpy as the last step normalises the post-init state</span>
+        <span class="c1"># to seed=N regardless of whether frameworks were just imported.</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_np</span>
+
+            <span class="n">_np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+        <span class="k">if</span> <span class="n">verbose</span> <span class="ow">and</span> <span class="n">fixed_modules</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Fixed random seeds for: </span><span class="si">{</span><span class="s1">&#39;, &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">fixed_modules</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+<div class="viewcode-block" id="RandomStateManager.get_np_generator">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.get_np_generator">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">get_np_generator</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Get or create a named NumPy random generator.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        name : str</span>
+<span class="sd">            Generator name (e.g., &quot;data&quot;, &quot;model&quot;, &quot;augment&quot;)</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        numpy.random.Generator</span>
+<span class="sd">            Independent NumPy random generator</span>
+
+<span class="sd">        Examples</span>
+<span class="sd">        --------</span>
+<span class="sd">        &gt;&gt;&gt; rng = RandomStateManager(42)</span>
+<span class="sd">        &gt;&gt;&gt; gen = rng.get_np_generator(&quot;data&quot;)</span>
+<span class="sd">        &gt;&gt;&gt; values = gen.random(100)</span>
+<span class="sd">        &gt;&gt;&gt; perm = gen.permutation(100)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_np</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span><span class="s2">&quot;NumPy required for random generators&quot;</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_generators</span><span class="p">:</span>
+            <span class="c1"># Create deterministic seed from name</span>
+            <span class="n">name_hash</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">hashlib</span><span class="o">.</span><span class="n">md5</span><span class="p">(</span><span class="n">name</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">8</span><span class="p">],</span> <span class="mi">16</span><span class="p">)</span>
+            <span class="n">seed</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span> <span class="o">+</span> <span class="n">name_hash</span><span class="p">)</span> <span class="o">%</span> <span class="p">(</span><span class="mi">2</span><span class="o">**</span><span class="mi">32</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_generators</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">default_rng</span><span class="p">(</span><span class="n">seed</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_generators</span><span class="p">[</span><span class="n">name</span><span class="p">]</span></div>
+
+
+<div class="viewcode-block" id="RandomStateManager.__call__">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.__call__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__call__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Get or create a named NumPy random generator.</span>
+
+<span class="sd">        This is a backward compatibility wrapper for get_np_generator().</span>
+<span class="sd">        Consider using get_np_generator() directly for clarity.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        name : str</span>
+<span class="sd">            Generator name</span>
+<span class="sd">        verbose : bool, optional</span>
+<span class="sd">            Whether to show deprecation warning</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        numpy.random.Generator</span>
+<span class="sd">            NumPy random generator with deterministic seed</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
+            <span class="nb">print</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Note: rng(&#39;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">&#39;) is deprecated. Use rng.get_np_generator(&#39;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">&#39;) instead.&quot;</span>
+            <span class="p">)</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="n">name</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="RandomStateManager.verify">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.verify">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">verify</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span> <span class="n">name</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Verify object matches cached hash (detects broken reproducibility).</span>
+
+<span class="sd">        First call: caches the object&#39;s hash</span>
+<span class="sd">        Later calls: verifies object matches cached hash</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        obj : Any</span>
+<span class="sd">            Object to verify (array, tensor, data, model weights, etc.)</span>
+<span class="sd">            Supports: numpy arrays, torch tensors, tf tensors, jax arrays,</span>
+<span class="sd">            lists, dicts, pandas dataframes, and basic types</span>
+<span class="sd">        name : str, optional</span>
+<span class="sd">            Cache name. Auto-generated if not provided.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        bool</span>
+<span class="sd">            True if matches cache (or first call), False if different</span>
+
+<span class="sd">        Examples</span>
+<span class="sd">        --------</span>
+<span class="sd">        &gt;&gt;&gt; data = generate_data()</span>
+<span class="sd">        &gt;&gt;&gt; rng.verify(data, &quot;train_data&quot;)  # First run: caches</span>
+<span class="sd">        &gt;&gt;&gt; # Next run:</span>
+<span class="sd">        &gt;&gt;&gt; rng.verify(data, &quot;train_data&quot;)  # Verifies match</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+
+        <span class="c1"># Auto-generate name if needed</span>
+        <span class="k">if</span> <span class="n">name</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">inspect</span>
+
+            <span class="n">frame</span> <span class="o">=</span> <span class="n">inspect</span><span class="o">.</span><span class="n">currentframe</span><span class="p">()</span><span class="o">.</span><span class="n">f_back</span>
+            <span class="n">filename</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">frame</span><span class="o">.</span><span class="n">f_code</span><span class="o">.</span><span class="n">co_filename</span><span class="p">)</span><span class="o">.</span><span class="n">stem</span>
+            <span class="n">lineno</span> <span class="o">=</span> <span class="n">frame</span><span class="o">.</span><span class="n">f_lineno</span>
+            <span class="n">name</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">filename</span><span class="si">}</span><span class="s2">_L</span><span class="si">{</span><span class="n">lineno</span><span class="si">}</span><span class="s2">&quot;</span>
+
+        <span class="c1"># Sanitize name</span>
+        <span class="n">safe_name</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span> <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">isalnum</span><span class="p">()</span> <span class="ow">or</span> <span class="n">c</span> <span class="ow">in</span> <span class="s2">&quot;-_&quot;</span> <span class="k">else</span> <span class="s2">&quot;_&quot;</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">name</span><span class="p">)</span>
+        <span class="n">cache_file</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cache_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">safe_name</span><span class="si">}</span><span class="s2">.json&quot;</span>
+
+        <span class="c1"># Compute hash based on object type</span>
+        <span class="n">obj_hash</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_compute_hash</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+
+        <span class="c1"># Use instance verbose if not specified</span>
+        <span class="k">if</span> <span class="n">verbose</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">verbose</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">verbose</span>
+
+        <span class="c1"># Check cache</span>
+        <span class="k">if</span> <span class="n">cache_file</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">cache_file</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+                <span class="n">cached</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+
+            <span class="n">matches</span> <span class="o">=</span> <span class="n">cached</span><span class="p">[</span><span class="s2">&quot;hash&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="n">obj_hash</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">matches</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">:</span>
+                <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;WARNING: Reproducibility broken for &#39;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">&#39;!&quot;</span><span class="p">)</span>
+                <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;   Expected: </span><span class="si">{</span><span class="n">cached</span><span class="p">[</span><span class="s1">&#39;hash&#39;</span><span class="p">][:</span><span class="mi">16</span><span class="p">]</span><span class="si">}</span><span class="s2">...&quot;</span><span class="p">)</span>
+                <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;   Got:      </span><span class="si">{</span><span class="n">obj_hash</span><span class="p">[:</span><span class="mi">16</span><span class="p">]</span><span class="si">}</span><span class="s2">...&quot;</span><span class="p">)</span>
+                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Reproducibility verification failed for &#39;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">&#39;&quot;</span><span class="p">)</span>
+            <span class="k">elif</span> <span class="n">matches</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">:</span>
+                <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;OK: Reproducibility verified for &#39;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">&#39;&quot;</span><span class="p">)</span>
+
+            <span class="k">return</span> <span class="n">matches</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># First call - cache it</span>
+            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">cache_file</span><span class="p">,</span> <span class="s2">&quot;w&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+                <span class="n">json</span><span class="o">.</span><span class="n">dump</span><span class="p">({</span><span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;hash&quot;</span><span class="p">:</span> <span class="n">obj_hash</span><span class="p">,</span> <span class="s2">&quot;seed&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">},</span> <span class="n">f</span><span class="p">)</span>
+            <span class="k">return</span> <span class="kc">True</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_compute_hash</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Compute hash for various object types.</span>
+
+<span class="sd">        Supports:</span>
+<span class="sd">        - NumPy arrays</span>
+<span class="sd">        - PyTorch tensors</span>
+<span class="sd">        - TensorFlow tensors</span>
+<span class="sd">        - JAX arrays</span>
+<span class="sd">        - Pandas DataFrames/Series</span>
+<span class="sd">        - Lists, tuples, dicts</span>
+<span class="sd">        - Basic types (int, float, str, bool)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+        <span class="c1"># NumPy array</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">obj</span><span class="o">.</span><span class="n">tobytes</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+
+        <span class="c1"># PyTorch tensor</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">torch</span>
+
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">torch</span><span class="o">.</span><span class="n">Tensor</span><span class="p">):</span>
+                <span class="c1"># Move to CPU and convert to numpy for consistent hashing</span>
+                <span class="n">obj_np</span> <span class="o">=</span> <span class="n">obj</span><span class="o">.</span><span class="n">detach</span><span class="p">()</span><span class="o">.</span><span class="n">cpu</span><span class="p">()</span><span class="o">.</span><span class="n">numpy</span><span class="p">()</span>
+                <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">obj_np</span><span class="o">.</span><span class="n">tobytes</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+        <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+        <span class="c1"># TensorFlow tensor — catch any import-time failure (protobuf</span>
+        <span class="c1"># runtime version mismatch raises VersionError, not ImportError).</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">tensorflow</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">tf</span>
+
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="p">(</span><span class="n">tf</span><span class="o">.</span><span class="n">Tensor</span><span class="p">,</span> <span class="n">tf</span><span class="o">.</span><span class="n">Variable</span><span class="p">)):</span>
+                <span class="n">obj_np</span> <span class="o">=</span> <span class="n">obj</span><span class="o">.</span><span class="n">numpy</span><span class="p">()</span>
+                <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">obj_np</span><span class="o">.</span><span class="n">tobytes</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+        <span class="c1"># JAX array</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">jax.numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">jnp</span>
+
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">jnp</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+                <span class="n">obj_np</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+                <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">obj_np</span><span class="o">.</span><span class="n">tobytes</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+        <span class="k">except</span> <span class="p">(</span><span class="ne">ImportError</span><span class="p">,</span> <span class="ne">AttributeError</span><span class="p">,</span> <span class="ne">RuntimeError</span><span class="p">):</span>
+            <span class="k">pass</span>
+
+        <span class="c1"># Pandas DataFrame/Series</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="p">(</span><span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">,</span> <span class="n">pd</span><span class="o">.</span><span class="n">Series</span><span class="p">)):</span>
+                <span class="n">obj_str</span> <span class="o">=</span> <span class="n">obj</span><span class="o">.</span><span class="n">to_json</span><span class="p">(</span><span class="n">orient</span><span class="o">=</span><span class="s2">&quot;split&quot;</span><span class="p">,</span> <span class="n">date_format</span><span class="o">=</span><span class="s2">&quot;iso&quot;</span><span class="p">)</span>
+                <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">obj_str</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+        <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+            <span class="k">pass</span>
+
+        <span class="c1"># Lists and tuples - convert to numpy array if numeric</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">)):</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">obj_np</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+                <span class="k">if</span> <span class="n">obj_np</span><span class="o">.</span><span class="n">dtype</span> <span class="o">!=</span> <span class="nb">object</span><span class="p">:</span>  <span class="c1"># Numeric array</span>
+                    <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">obj_np</span><span class="o">.</span><span class="n">tobytes</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+            <span class="k">except</span><span class="p">:</span>
+                <span class="k">pass</span>
+            <span class="c1"># Fall through to string representation</span>
+
+        <span class="c1"># Dictionaries - serialize to JSON</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+            <span class="k">try</span><span class="p">:</span>
+                <span class="n">obj_str</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">sort_keys</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="nb">str</span><span class="p">)</span>
+                <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">obj_str</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+            <span class="k">except</span><span class="p">:</span>
+                <span class="k">pass</span>
+
+        <span class="c1"># Default: convert to string</span>
+        <span class="n">obj_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">obj_str</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">32</span><span class="p">]</span>
+
+<div class="viewcode-block" id="RandomStateManager.checkpoint">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.checkpoint">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">checkpoint</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;checkpoint&quot;</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Save current state of all generators.&quot;&quot;&quot;</span>
+        <span class="n">checkpoint_file</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cache_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">.pkl&quot;</span>
+        <span class="n">state</span> <span class="o">=</span> <span class="p">{</span>
+            <span class="s2">&quot;seed&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">seed</span><span class="p">,</span>
+            <span class="s2">&quot;generators&quot;</span><span class="p">:</span> <span class="p">{</span>
+                <span class="n">k</span><span class="p">:</span> <span class="n">v</span><span class="o">.</span><span class="n">bit_generator</span><span class="o">.</span><span class="n">state</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_generators</span><span class="o">.</span><span class="n">items</span><span class="p">()</span>
+            <span class="p">},</span>
+        <span class="p">}</span>
+        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">checkpoint_file</span><span class="p">,</span> <span class="s2">&quot;wb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+            <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">state</span><span class="p">,</span> <span class="n">f</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">checkpoint_file</span></div>
+
+
+<div class="viewcode-block" id="RandomStateManager.restore">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.restore">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">restore</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">checkpoint</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Restore from checkpoint.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">checkpoint</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+            <span class="n">checkpoint</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">checkpoint</span><span class="p">)</span>
+
+        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">checkpoint</span><span class="p">,</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+            <span class="n">state</span> <span class="o">=</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">seed</span> <span class="o">=</span> <span class="n">state</span><span class="p">[</span><span class="s2">&quot;seed&quot;</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_auto_fix_seeds</span><span class="p">()</span>
+
+        <span class="c1"># Restore generator states</span>
+        <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">gen_state</span> <span class="ow">in</span> <span class="n">state</span><span class="p">[</span><span class="s2">&quot;generators&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="n">gen</span> <span class="o">=</span> <span class="bp">self</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+            <span class="n">gen</span><span class="o">.</span><span class="n">bit_generator</span><span class="o">.</span><span class="n">state</span> <span class="o">=</span> <span class="n">gen_state</span></div>
+
+
+<div class="viewcode-block" id="RandomStateManager.temporary_seed">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.temporary_seed">[docs]</a>
+    <span class="nd">@contextmanager</span>
+    <span class="k">def</span><span class="w"> </span><span class="nf">temporary_seed</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">seed</span><span class="p">:</span> <span class="nb">int</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Context manager for temporary seed change.&quot;&quot;&quot;</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">random</span>
+
+        <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+        <span class="c1"># Save current states</span>
+        <span class="n">old_random_state</span> <span class="o">=</span> <span class="n">random</span><span class="o">.</span><span class="n">getstate</span><span class="p">()</span>
+        <span class="n">old_np_state</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">get_state</span><span class="p">()</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_np</span> <span class="k">else</span> <span class="kc">None</span>
+
+        <span class="c1"># Set temporary seed</span>
+        <span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="n">seed</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_np</span><span class="p">:</span>
+            <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="n">seed</span><span class="p">)</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">yield</span>
+        <span class="k">finally</span><span class="p">:</span>
+            <span class="c1"># Restore states</span>
+            <span class="n">random</span><span class="o">.</span><span class="n">setstate</span><span class="p">(</span><span class="n">old_random_state</span><span class="p">)</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_np</span> <span class="ow">and</span> <span class="n">old_np_state</span><span class="p">:</span>
+                <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">set_state</span><span class="p">(</span><span class="n">old_np_state</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="RandomStateManager.get_sklearn_random_state">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.get_sklearn_random_state">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">get_sklearn_random_state</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Get a random state for scikit-learn.</span>
+
+<span class="sd">        Scikit-learn uses integers for random_state parameter.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        name : str</span>
+<span class="sd">            Generator name</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        int</span>
+<span class="sd">            Random state integer for sklearn</span>
+
+<span class="sd">        Examples</span>
+<span class="sd">        --------</span>
+<span class="sd">        &gt;&gt;&gt; rng = RandomStateManager(42)</span>
+<span class="sd">        &gt;&gt;&gt; from sklearn.model_selection import train_test_split</span>
+<span class="sd">        &gt;&gt;&gt; X_train, X_test = train_test_split(</span>
+<span class="sd">        ...     X, test_size=0.2,</span>
+<span class="sd">        ...     random_state=rng.get_sklearn_random_state(&quot;split&quot;)</span>
+<span class="sd">        ... )</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Create deterministic seed from name</span>
+        <span class="n">name_hash</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">hashlib</span><span class="o">.</span><span class="n">md5</span><span class="p">(</span><span class="n">name</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">8</span><span class="p">],</span> <span class="mi">16</span><span class="p">)</span>
+        <span class="n">seed</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span> <span class="o">+</span> <span class="n">name_hash</span><span class="p">)</span> <span class="o">%</span> <span class="p">(</span><span class="mi">2</span><span class="o">**</span><span class="mi">32</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">seed</span></div>
+
+
+<div class="viewcode-block" id="RandomStateManager.get_torch_generator">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.get_torch_generator">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">get_torch_generator</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Get or create a named PyTorch generator.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        name : str</span>
+<span class="sd">            Generator name</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        torch.Generator</span>
+<span class="sd">            PyTorch generator with deterministic seed</span>
+
+<span class="sd">        Examples</span>
+<span class="sd">        --------</span>
+<span class="sd">        &gt;&gt;&gt; rng = RandomStateManager(42)</span>
+<span class="sd">        &gt;&gt;&gt; gen = rng.get_torch_generator(&quot;model&quot;)</span>
+<span class="sd">        &gt;&gt;&gt; torch.randn(5, 5, generator=gen)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="kn">import</span><span class="w"> </span><span class="nn">torch</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="c1"># ImportError: torch not installed.</span>
+            <span class="c1"># Anything else (e.g. CUDA driver mismatch, broken install)</span>
+            <span class="c1"># surfaces with the original message so the user can diagnose.</span>
+            <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;PyTorch unavailable: </span><span class="si">{</span><span class="nb">type</span><span class="p">(</span><span class="n">e</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s2">&quot;_torch_generators&quot;</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_torch_generators</span> <span class="o">=</span> <span class="p">{}</span>
+
+        <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_torch_generators</span><span class="p">:</span>
+            <span class="c1"># Create deterministic seed from name</span>
+            <span class="n">name_hash</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">hashlib</span><span class="o">.</span><span class="n">md5</span><span class="p">(</span><span class="n">name</span><span class="o">.</span><span class="n">encode</span><span class="p">())</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">8</span><span class="p">],</span> <span class="mi">16</span><span class="p">)</span>
+            <span class="n">seed</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">seed</span> <span class="o">+</span> <span class="n">name_hash</span><span class="p">)</span> <span class="o">%</span> <span class="p">(</span><span class="mi">2</span><span class="o">**</span><span class="mi">32</span><span class="p">)</span>
+
+            <span class="n">gen</span> <span class="o">=</span> <span class="n">torch</span><span class="o">.</span><span class="n">Generator</span><span class="p">()</span>
+            <span class="n">gen</span><span class="o">.</span><span class="n">manual_seed</span><span class="p">(</span><span class="n">seed</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_torch_generators</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">gen</span>
+
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_torch_generators</span><span class="p">[</span><span class="n">name</span><span class="p">]</span></div>
+
+
+<div class="viewcode-block" id="RandomStateManager.get_generator">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.get_generator">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">get_generator</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Alias for get_np_generator for compatibility.&quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="n">name</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="RandomStateManager.clear_cache">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.RandomStateManager.clear_cache">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">clear_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">patterns</span><span class="p">:</span> <span class="nb">str</span> <span class="o">|</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Clear verification cache files.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        patterns : str or list of str, optional</span>
+<span class="sd">            Specific cache patterns to clear. If None, clears all.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        int</span>
+<span class="sd">            Number of cache files removed</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cache_dir</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="k">return</span> <span class="mi">0</span>
+
+        <span class="n">removed_count</span> <span class="o">=</span> <span class="mi">0</span>
+
+        <span class="k">if</span> <span class="n">patterns</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="c1"># Clear all .json files</span>
+            <span class="n">cache_files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cache_dir</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s2">&quot;*.json&quot;</span><span class="p">))</span>
+            <span class="k">for</span> <span class="n">cache_file</span> <span class="ow">in</span> <span class="n">cache_files</span><span class="p">:</span>
+                <span class="n">cache_file</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
+                <span class="n">removed_count</span> <span class="o">+=</span> <span class="mi">1</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># Ensure patterns is a list</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">patterns</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+                <span class="n">patterns</span> <span class="o">=</span> <span class="p">[</span><span class="n">patterns</span><span class="p">]</span>
+
+            <span class="k">for</span> <span class="n">pattern</span> <span class="ow">in</span> <span class="n">patterns</span><span class="p">:</span>
+                <span class="c1"># Handle glob patterns</span>
+                <span class="k">if</span> <span class="s2">&quot;*&quot;</span> <span class="ow">in</span> <span class="n">pattern</span> <span class="ow">or</span> <span class="s2">&quot;?&quot;</span> <span class="ow">in</span> <span class="n">pattern</span><span class="p">:</span>
+                    <span class="n">cache_files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cache_dir</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">pattern</span><span class="si">}</span><span class="s2">.json&quot;</span><span class="p">))</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="c1"># Exact match</span>
+                    <span class="n">cache_file</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cache_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">pattern</span><span class="si">}</span><span class="s2">.json&quot;</span>
+                    <span class="n">cache_files</span> <span class="o">=</span> <span class="p">[</span><span class="n">cache_file</span><span class="p">]</span> <span class="k">if</span> <span class="n">cache_file</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="k">else</span> <span class="p">[]</span>
+
+                <span class="k">for</span> <span class="n">cache_file</span> <span class="ow">in</span> <span class="n">cache_files</span><span class="p">:</span>
+                    <span class="n">cache_file</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
+                    <span class="n">removed_count</span> <span class="o">+=</span> <span class="mi">1</span>
+
+        <span class="k">return</span> <span class="n">removed_count</span></div>
+</div>
+
+
+
+<div class="viewcode-block" id="get">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.get">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get</span><span class="p">(</span><span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">RandomStateManager</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get or create the global RandomStateManager instance.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    verbose : bool, optional</span>
+<span class="sd">        Whether to print status messages (default: False)</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    RandomStateManager</span>
+<span class="sd">        Global instance</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_repro import get</span>
+<span class="sd">    &gt;&gt;&gt; rng = get()</span>
+<span class="sd">    &gt;&gt;&gt; data = rng(&quot;data&quot;).random(100)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_GLOBAL_INSTANCE</span>
+
+    <span class="k">if</span> <span class="n">_GLOBAL_INSTANCE</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">_GLOBAL_INSTANCE</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">_GLOBAL_INSTANCE</span></div>
+
+
+
+<div class="viewcode-block" id="reset">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.reset">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">reset</span><span class="p">(</span><span class="n">seed</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">42</span><span class="p">,</span> <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">RandomStateManager</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Reset global RandomStateManager with new seed.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    seed : int</span>
+<span class="sd">        New seed value</span>
+<span class="sd">    verbose : bool, optional</span>
+<span class="sd">        Whether to print status messages (default: False)</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    RandomStateManager</span>
+<span class="sd">        New global instance</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; from scitex_repro import reset</span>
+<span class="sd">    &gt;&gt;&gt; rng = reset(seed=123)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">global</span> <span class="n">_GLOBAL_INSTANCE</span>
+    <span class="n">_GLOBAL_INSTANCE</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="n">seed</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">_GLOBAL_INSTANCE</span></div>
+
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_repro/_gen_ID.html b/src/scitex/_sphinx_html/_modules/scitex_repro/_gen_ID.html
new file mode 100644
index 000000000..4f7e78d2d
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_repro.html">scitex_repro</a></li>
+      <li class="breadcrumb-item active">scitex_repro._gen_ID</li>
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+      </li>
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+             
+  <h1>Source code for scitex_repro._gen_ID</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Time-stamp: &quot;2024-11-07 17:53:38 (ywatanabe)&quot;</span>
+<span class="c1"># Extracted from scitex-python/src/scitex/repro/_gen_ID.py</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">random</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_random</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">string</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_string</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span> <span class="k">as</span> <span class="n">_datetime</span>
+
+
+<div class="viewcode-block" id="gen_id">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.gen_id">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">gen_id</span><span class="p">(</span><span class="n">time_format</span><span class="o">=</span><span class="s2">&quot;%YY-%mM-</span><span class="si">%d</span><span class="s2">D-%Hh%Mm%Ss&quot;</span><span class="p">,</span> <span class="n">N</span><span class="o">=</span><span class="mi">8</span><span class="p">,</span> <span class="o">*</span><span class="p">,</span> <span class="n">now_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate a unique identifier with timestamp and random characters.</span>
+
+<span class="sd">    Creates a unique ID by combining a formatted timestamp with random</span>
+<span class="sd">    alphanumeric characters. Useful for creating unique experiment IDs,</span>
+<span class="sd">    run identifiers, or temporary file names.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    time_format : str, optional</span>
+<span class="sd">        Format string for timestamp portion. Default is &quot;%YY-%mM-%dD-%Hh%Mm%Ss&quot;</span>
+<span class="sd">        which produces &quot;2025Y-05M-31D-12h30m45s&quot; format.</span>
+<span class="sd">    N : int, optional</span>
+<span class="sd">        Number of random characters to append. Default is 8.</span>
+<span class="sd">    now_fn : callable, optional</span>
+<span class="sd">        Zero-argument callable returning a `datetime`-like object with</span>
+<span class="sd">        `.strftime()`. Defaults to `datetime.now`. Injection point for</span>
+<span class="sd">        deterministic tests — pass a fake that returns a fixed datetime</span>
+<span class="sd">        instead of mocking `datetime` globally.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        Unique identifier in format &quot;{timestamp}_{random_chars}&quot;</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; id1 = gen_id()</span>
+<span class="sd">    &gt;&gt;&gt; print(id1)</span>
+<span class="sd">    &#39;2025Y-05M-31D-12h30m45s_a3Bc9xY2&#39;</span>
+
+<span class="sd">    &gt;&gt;&gt; id2 = gen_id(time_format=&quot;%Y%m%d&quot;, N=4)</span>
+<span class="sd">    &gt;&gt;&gt; print(id2)</span>
+<span class="sd">    &#39;20250531_xY9a&#39;</span>
+
+<span class="sd">    &gt;&gt;&gt; # For experiment tracking</span>
+<span class="sd">    &gt;&gt;&gt; exp_id = gen_id()</span>
+<span class="sd">    &gt;&gt;&gt; save_path = f&quot;results/experiment_{exp_id}.pkl&quot;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">now_fn</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">now_fn</span> <span class="o">=</span> <span class="n">_datetime</span><span class="o">.</span><span class="n">now</span>
+    <span class="n">now_str</span> <span class="o">=</span> <span class="n">now_fn</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">time_format</span><span class="p">)</span>
+    <span class="n">rand_str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
+        <span class="p">[</span><span class="n">_random</span><span class="o">.</span><span class="n">choice</span><span class="p">(</span><span class="n">_string</span><span class="o">.</span><span class="n">ascii_letters</span> <span class="o">+</span> <span class="n">_string</span><span class="o">.</span><span class="n">digits</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">)]</span>
+    <span class="p">)</span>
+    <span class="k">return</span> <span class="n">now_str</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="n">rand_str</span></div>
+
+
+
+<span class="c1"># Backward compatibility</span>
+<span class="n">gen_ID</span> <span class="o">=</span> <span class="n">gen_id</span>  <span class="c1"># Deprecated: use gen_id instead</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+          <li class="breadcrumb-item"><a href="../scitex_repro.html">scitex_repro</a></li>
+      <li class="breadcrumb-item active">scitex_repro._gen_timestamp</li>
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+      </li>
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+             
+  <h1>Source code for scitex_repro._gen_timestamp</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Time-stamp: &quot;2024-11-07 17:44:32 (ywatanabe)&quot;</span>
+<span class="c1"># Extracted from scitex-python/src/scitex/repro/_gen_timestamp.py</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span> <span class="k">as</span> <span class="n">_datetime</span>
+
+
+<div class="viewcode-block" id="gen_timestamp">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.gen_timestamp">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">gen_timestamp</span><span class="p">(</span><span class="o">*</span><span class="p">,</span> <span class="n">now_fn</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate a timestamp string for file naming.</span>
+
+<span class="sd">    Returns a timestamp in the format YYYY-MMDD-HHMM, suitable for</span>
+<span class="sd">    creating unique filenames or version identifiers.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    now_fn : callable, optional</span>
+<span class="sd">        Zero-argument callable returning a `datetime`-like object with</span>
+<span class="sd">        `.strftime()`. Defaults to `datetime.now`. Injection point for</span>
+<span class="sd">        deterministic tests — pass a fake that returns a fixed datetime</span>
+<span class="sd">        instead of mocking `datetime` globally.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        Timestamp string in format &quot;YYYY-MMDD-HHMM&quot;</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; timestamp = gen_timestamp()</span>
+<span class="sd">    &gt;&gt;&gt; print(timestamp)</span>
+<span class="sd">    &#39;2025-0531-1230&#39;</span>
+
+<span class="sd">    &gt;&gt;&gt; filename = f&quot;experiment_{gen_timestamp()}.csv&quot;</span>
+<span class="sd">    &gt;&gt;&gt; print(filename)</span>
+<span class="sd">    &#39;experiment_2025-0531-1230.csv&#39;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">now_fn</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">now_fn</span> <span class="o">=</span> <span class="n">_datetime</span><span class="o">.</span><span class="n">now</span>
+    <span class="k">return</span> <span class="n">now_fn</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">&quot;%Y-%m</span><span class="si">%d</span><span class="s2">-%H%M&quot;</span><span class="p">)</span></div>
+
+
+
+<span class="n">timestamp</span> <span class="o">=</span> <span class="n">gen_timestamp</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
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+
+        </div>
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+          <a href="../../index.html">SciTeX</a>
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+          <li class="breadcrumb-item"><a href="../scitex_repro.html">scitex_repro</a></li>
+      <li class="breadcrumb-item active">scitex_repro._hash_array</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_repro._hash_array</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Extracted from scitex-python/src/scitex/repro/_hash_array.py</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">hashlib</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+
+<div class="viewcode-block" id="hash_array">
+<a class="viewcode-back" href="../../source/api/rng.html#scitex.repro.hash_array">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">hash_array</span><span class="p">(</span><span class="n">array_data</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate hash for array data.</span>
+
+<span class="sd">    Creates a deterministic hash for numpy arrays, useful for</span>
+<span class="sd">    verifying data integrity and reproducibility.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    array_data : np.ndarray</span>
+<span class="sd">        Array to hash</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    str</span>
+<span class="sd">        16-character hash string</span>
+
+<span class="sd">    Examples</span>
+<span class="sd">    --------</span>
+<span class="sd">    &gt;&gt;&gt; import numpy as np</span>
+<span class="sd">    &gt;&gt;&gt; data = np.array([1, 2, 3, 4, 5])</span>
+<span class="sd">    &gt;&gt;&gt; hash1 = hash_array(data)</span>
+<span class="sd">    &gt;&gt;&gt; hash2 = hash_array(data)</span>
+<span class="sd">    &gt;&gt;&gt; hash1 == hash2</span>
+<span class="sd">    True</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">data_bytes</span> <span class="o">=</span> <span class="n">array_data</span><span class="o">.</span><span class="n">tobytes</span><span class="p">()</span>
+    <span class="k">return</span> <span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">data_bytes</span><span class="p">)</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">()[:</span><span class="mi">16</span><span class="p">]</span></div>
+
+</pre></div>
+
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new file mode 100644
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
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+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_resource._host</li>
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+      </li>
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+             
+  <h1>Source code for scitex_resource._host</h1><div class="highlight"><pre>
+<span></span><span class="sd">&quot;&quot;&quot;Host identity — canonical name and per-host config.</span>
+
+<span class="sd">scitex-resource owns the question &quot;what host am I running on?&quot;. Other</span>
+<span class="sd">scitex-* packages (scitex-orochi, scitex-hpc, scitex-agent-container)</span>
+<span class="sd">consume :func:`get_host_name` so every package agrees on the same</span>
+<span class="sd">canonical name regardless of how the OS reports it (FQDN drift,</span>
+<span class="sd">``Yusukes-MacBook-Air`` vs ``mba``, login-node vs compute-node, etc.).</span>
+
+<span class="sd">Resolution cascade (highest precedence first):</span>
+
+<span class="sd">    1. ``$SCITEX_RESOURCE_HOST`` env var</span>
+<span class="sd">       (legacy ``$SCITEX_RESOURCE_MACHINE`` is still honoured as a</span>
+<span class="sd">       fallback to keep older shells working)</span>
+<span class="sd">    2. ``&lt;project&gt;/.scitex/resource/config.yaml`` ``host.canonical_name``</span>
+<span class="sd">       (falls back to legacy ``machine.canonical_name``)</span>
+<span class="sd">    3. ``~/.scitex/resource/config.yaml`` ``host.canonical_name``</span>
+<span class="sd">       (falls back to legacy ``machine.canonical_name``)</span>
+<span class="sd">    4. Short hostname (``socket.gethostname().split(&quot;.&quot;, 1)[0]``)</span>
+
+<span class="sd">The same chain applies to :func:`get_host_config` which returns the</span>
+<span class="sd">full ``host:`` block including ``aliases``, ``role``, ``hpc.*``.</span>
+
+<span class="sd">Config schema (``~/.scitex/resource/config.yaml`` — example for a SLURM</span>
+<span class="sd">login node):</span>
+
+<span class="sd">    host:</span>
+<span class="sd">      canonical_name: spartan</span>
+<span class="sd">      aliases:</span>
+<span class="sd">        - spartan-login1.hpc.example.edu</span>
+<span class="sd">        - spartan-login1</span>
+<span class="sd">      role: hpc-login</span>
+<span class="sd">      hpc:</span>
+<span class="sd">        cluster: spartan</span>
+<span class="sd">        login_only: true        # don&#39;t surface login-node CPU as available</span>
+<span class="sd">        partitions: [physical, sapphire]</span>
+
+<span class="sd">This file is part of the scitex local-state convention — see the</span>
+<span class="sd">``arch-local-state-directories`` skill in scitex-python for the full</span>
+<span class="sd">``.scitex/&lt;pkg-short&gt;/`` layout (config tracked, ``runtime/`` ignored).</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">socket</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="n">_PKG_SHORT</span> <span class="o">=</span> <span class="s2">&quot;resource&quot;</span>
+<span class="n">_ENV_VAR</span> <span class="o">=</span> <span class="s2">&quot;SCITEX_RESOURCE_HOST&quot;</span>
+<span class="n">_ENV_VAR_LEGACY</span> <span class="o">=</span> <span class="s2">&quot;SCITEX_RESOURCE_MACHINE&quot;</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_config_paths</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="n">Path</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Search order for ``config.yaml`` — project scope first, user fallback.</span>
+
+<span class="sd">    The project search walks from cwd up to (but stops AT) ``$HOME`` so</span>
+<span class="sd">    the user&#39;s ``~/.scitex/&lt;pkg&gt;/config.yaml`` is not mistaken for a</span>
+<span class="sd">    project hit when cwd happens to live under home (which it almost</span>
+<span class="sd">    always does on a workstation).</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">paths</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">cwd_root</span> <span class="o">=</span> <span class="n">Path</span><span class="o">.</span><span class="n">cwd</span><span class="p">()</span>
+    <span class="n">home</span> <span class="o">=</span> <span class="n">Path</span><span class="o">.</span><span class="n">home</span><span class="p">()</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">parent</span> <span class="ow">in</span> <span class="p">(</span><span class="n">cwd_root</span><span class="p">,</span> <span class="o">*</span><span class="n">cwd_root</span><span class="o">.</span><span class="n">parents</span><span class="p">):</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">resolved</span> <span class="o">=</span> <span class="n">parent</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+        <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
+            <span class="n">resolved</span> <span class="o">=</span> <span class="n">parent</span>
+        <span class="k">if</span> <span class="n">resolved</span> <span class="o">==</span> <span class="n">home</span><span class="p">:</span>
+            <span class="k">break</span>
+        <span class="n">candidate</span> <span class="o">=</span> <span class="n">parent</span> <span class="o">/</span> <span class="s2">&quot;.scitex&quot;</span> <span class="o">/</span> <span class="n">_PKG_SHORT</span> <span class="o">/</span> <span class="s2">&quot;config.yaml&quot;</span>
+        <span class="k">if</span> <span class="n">candidate</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+            <span class="n">paths</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">candidate</span><span class="p">)</span>
+            <span class="k">break</span>
+    <span class="n">user_root</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;SCITEX_DIR&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">Path</span><span class="o">.</span><span class="n">home</span><span class="p">()</span> <span class="o">/</span> <span class="s2">&quot;.scitex&quot;</span><span class="p">))</span>
+    <span class="n">user</span> <span class="o">=</span> <span class="n">user_root</span> <span class="o">/</span> <span class="n">_PKG_SHORT</span> <span class="o">/</span> <span class="s2">&quot;config.yaml&quot;</span>
+    <span class="k">if</span> <span class="n">user</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
+        <span class="n">paths</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">user</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">paths</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_load_yaml</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">yaml</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">{}</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">yaml</span><span class="o">.</span><span class="n">safe_load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span> <span class="ow">or</span> <span class="p">{}</span>
+    <span class="k">except</span> <span class="p">(</span><span class="ne">OSError</span><span class="p">,</span> <span class="n">yaml</span><span class="o">.</span><span class="n">YAMLError</span><span class="p">):</span>
+        <span class="k">return</span> <span class="p">{}</span>
+
+
+<div class="viewcode-block" id="load_config">
+<a class="viewcode-back" href="../../source/api/resource.html#scitex.resource.load_config">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">load_config</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the merged config dict — project file overrides user file.</span>
+
+<span class="sd">    Empty dict if no config files exist or PyYAML isn&#39;t installed.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">merged</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="nb">reversed</span><span class="p">(</span><span class="n">_config_paths</span><span class="p">()):</span>
+        <span class="n">data</span> <span class="o">=</span> <span class="n">_load_yaml</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+        <span class="n">merged</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">merged</span></div>
+
+
+
+<div class="viewcode-block" id="get_host_config">
+<a class="viewcode-back" href="../../source/api/resource.html#scitex.resource.get_host_config">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_host_config</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the ``host:`` block from config (falls back to ``machine:``).</span>
+
+<span class="sd">    If a config file declares only the legacy ``machine:`` key, a</span>
+<span class="sd">    one-time DeprecationWarning is emitted and that block is returned.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">cfg</span> <span class="o">=</span> <span class="n">load_config</span><span class="p">()</span>
+    <span class="n">host_block</span> <span class="o">=</span> <span class="n">cfg</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;host&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">host_block</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">host_block</span>
+    <span class="n">machine_block</span> <span class="o">=</span> <span class="n">cfg</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;machine&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">machine_block</span><span class="p">:</span>
+        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+            <span class="s2">&quot;config.yaml `machine:` block is deprecated; rename it to `host:`.&quot;</span><span class="p">,</span>
+            <span class="ne">DeprecationWarning</span><span class="p">,</span>
+            <span class="n">stacklevel</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">return</span> <span class="n">machine_block</span>
+    <span class="k">return</span> <span class="p">{}</span></div>
+
+
+
+<div class="viewcode-block" id="get_host_name">
+<a class="viewcode-back" href="../../source/api/resource.html#scitex.resource.get_host_name">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_host_name</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the canonical host name.</span>
+
+<span class="sd">    See module docstring for the resolution cascade. Always returns a</span>
+<span class="sd">    non-empty string — the short hostname is the last-resort fallback.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">env</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">_ENV_VAR</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">env</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">env</span>
+    <span class="n">legacy_env</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">_ENV_VAR_LEGACY</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">legacy_env</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">legacy_env</span>
+    <span class="n">cfg</span> <span class="o">=</span> <span class="n">get_host_config</span><span class="p">()</span>
+    <span class="n">canonical</span> <span class="o">=</span> <span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;canonical_name&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">canonical</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">canonical</span>
+    <span class="k">return</span> <span class="n">_short_hostname</span><span class="p">()</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_short_hostname</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">or</span> <span class="s2">&quot;unknown&quot;</span>
+    <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
+        <span class="k">return</span> <span class="s2">&quot;unknown&quot;</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_resource/_log_processor_usages.html b/src/scitex/_sphinx_html/_modules/scitex_resource/_log_processor_usages.html
new file mode 100644
index 000000000..a58d6fbe8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_resource/_log_processor_usages.html
@@ -0,0 +1,906 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_resource._log_processor_usages &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_resource._log_processor_usages</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_resource._log_processor_usages</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Time-stamp: &quot;2024-11-04 16:28:53 (ywatanabe)&quot;</span>
+<span class="c1"># File: ./scitex_repo/src/scitex/resource/_log_processor_usages.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Functionality:</span>
+<span class="sd">    * Monitors and logs system resource utilization over time</span>
+<span class="sd">Input:</span>
+<span class="sd">    * Path for saving logs</span>
+<span class="sd">    * Monitoring duration and interval</span>
+<span class="sd">Output:</span>
+<span class="sd">    * CSV file containing time-series resource usage data</span>
+<span class="sd">Prerequisites:</span>
+<span class="sd">    * scitex package with processor usage monitoring capabilities</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="sd">&quot;&quot;&quot;Imports&quot;&quot;&quot;</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">math</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">time</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">multiprocessing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Process</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Union</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._compat</span><span class="w"> </span><span class="kn">import</span> <span class="n">printc</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._specs</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_processor_usages</span>
+
+
+<span class="c1"># Vendored minimal load/save: we only need CSV here. Falls back to scitex.io</span>
+<span class="c1"># at call time for any non-CSV path so downstream behavior is unchanged when</span>
+<span class="c1"># the umbrella package is available.</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">load</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+    <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.csv&quot;</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">try</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_io._load</span><span class="w"> </span><span class="kn">import</span> <span class="n">load</span> <span class="k">as</span> <span class="n">_load</span>
+
+        <span class="k">return</span> <span class="n">_load</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;Loading non-CSV resource logs requires scitex (umbrella). &quot;</span>
+            <span class="s2">&quot;Install with: pip install scitex&quot;</span>
+        <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">save</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">path</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+
+    <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span> <span class="ow">or</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+    <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">path</span><span class="p">)</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.csv&quot;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">):</span>
+        <span class="n">obj</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+        <span class="k">return</span>
+    <span class="k">try</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_io._save</span><span class="w"> </span><span class="kn">import</span> <span class="n">save</span> <span class="k">as</span> <span class="n">_save</span>
+
+        <span class="n">_save</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">path</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+        <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
+            <span class="s2">&quot;Saving non-CSV resource logs requires scitex (umbrella). &quot;</span>
+            <span class="s2">&quot;Install with: pip install scitex&quot;</span>
+        <span class="p">)</span>
+
+
+<span class="c1"># Defer scitex.sh import (scitex_sh is the standalone preferred path).</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">sh</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">scitex_sh</span><span class="w"> </span><span class="kn">import</span> <span class="n">sh</span> <span class="k">as</span> <span class="n">_sh</span>
+
+        <span class="k">return</span> <span class="n">_sh</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+        <span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;scitex_resource: shell commands must be list-form&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">check</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">stdout</span>
+
+
+<span class="sd">&quot;&quot;&quot;Functions &amp; Classes&quot;&quot;&quot;</span>
+
+
+<div class="viewcode-block" id="log_processor_usages">
+<a class="viewcode-back" href="../../source/api/resource.html#scitex.resource.log_processor_usages">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">log_processor_usages</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;/tmp/scitex/processor_usages.csv&quot;</span><span class="p">,</span>
+    <span class="n">limit_min</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mi">30</span><span class="p">,</span>
+    <span class="n">interval_s</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mi">1</span><span class="p">,</span>
+    <span class="n">init</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+    <span class="n">background</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="n">Process</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Logs system resource usage over time.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str</span>
+<span class="sd">        Path to save the log file</span>
+<span class="sd">    limit_min : float</span>
+<span class="sd">        Monitoring duration in minutes</span>
+<span class="sd">    interval_s : float</span>
+<span class="sd">        Sampling interval in seconds</span>
+<span class="sd">    init : bool</span>
+<span class="sd">        Whether to clear existing log file</span>
+<span class="sd">    verbose : bool</span>
+<span class="sd">        Whether to print the log</span>
+<span class="sd">    background : bool</span>
+<span class="sd">        Whether to run in background</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Union[None, Process]</span>
+<span class="sd">        Process object if background=True, None otherwise</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">background</span><span class="p">:</span>
+        <span class="n">process</span> <span class="o">=</span> <span class="n">Process</span><span class="p">(</span>
+            <span class="n">target</span><span class="o">=</span><span class="n">_log_processor_usages</span><span class="p">,</span>
+            <span class="n">args</span><span class="o">=</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">limit_min</span><span class="p">,</span> <span class="n">interval_s</span><span class="p">,</span> <span class="n">init</span><span class="p">,</span> <span class="n">verbose</span><span class="p">),</span>
+        <span class="p">)</span>
+        <span class="n">process</span><span class="o">.</span><span class="n">start</span><span class="p">()</span>
+        <span class="k">return</span> <span class="n">process</span>
+
+    <span class="k">return</span> <span class="n">_log_processor_usages</span><span class="p">(</span>
+        <span class="n">path</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
+        <span class="n">limit_min</span><span class="o">=</span><span class="n">limit_min</span><span class="p">,</span>
+        <span class="n">interval_s</span><span class="o">=</span><span class="n">interval_s</span><span class="p">,</span>
+        <span class="n">init</span><span class="o">=</span><span class="n">init</span><span class="p">,</span>
+        <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span>
+    <span class="p">)</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_log_processor_usages</span><span class="p">(</span>
+    <span class="n">path</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;/tmp/scitex/processor_usages.csv&quot;</span><span class="p">,</span>
+    <span class="n">limit_min</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mi">30</span><span class="p">,</span>
+    <span class="n">interval_s</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mi">1</span><span class="p">,</span>
+    <span class="n">init</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+    <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Logs system resource usage over time.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    path : str</span>
+<span class="sd">        Path to save the log file</span>
+<span class="sd">    limit_min : float</span>
+<span class="sd">        Monitoring duration in minutes</span>
+<span class="sd">    interval_s : float</span>
+<span class="sd">        Sampling interval in seconds</span>
+<span class="sd">    init : bool</span>
+<span class="sd">        Whether to clear existing log file</span>
+<span class="sd">    verbose : bool</span>
+<span class="sd">        Whether to print the log</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; log_processor_usages(path=&quot;usage_log.csv&quot;, limit_min=5)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">assert</span> <span class="n">path</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.csv&quot;</span><span class="p">),</span> <span class="s2">&quot;Path must end with .csv&quot;</span>
+
+    <span class="c1"># Log file initialization</span>
+    <span class="n">_ensure_log_file</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">init</span><span class="p">)</span>
+    <span class="n">printc</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Log file can be monitored with with `tail -f </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">`&quot;</span><span class="p">)</span>
+
+    <span class="n">limit_s</span> <span class="o">=</span> <span class="n">limit_min</span> <span class="o">*</span> <span class="mi">60</span>
+    <span class="n">n_max</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">ceil</span><span class="p">(</span><span class="n">limit_s</span> <span class="o">//</span> <span class="n">interval_s</span><span class="p">)</span>
+
+    <span class="k">for</span> <span class="n">_</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_max</span><span class="p">):</span>
+        <span class="n">_add</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">)</span>
+        <span class="n">time</span><span class="o">.</span><span class="n">sleep</span><span class="p">(</span><span class="n">interval_s</span><span class="p">)</span>
+
+
+<span class="c1"># def _ensure_log_file(path: str, init: bool) -&gt; None:</span>
+<span class="c1">#     def _create_path(path):</span>
+<span class="c1">#         os.makedirs(os.path.dirname(path), exist_ok=True)</span>
+<span class="c1">#         empty_df = pd.DataFrame()</span>
+<span class="c1">#         save(empty_df, path, verbose=False)</span>
+<span class="c1">#         printc(f&quot;{path} created.&quot;)</span>
+
+<span class="c1">#     if not os.path.exists(path):</span>
+<span class="c1">#         _create_path(path)</span>
+
+<span class="c1">#     else:</span>
+<span class="c1">#         if init and os.path.exists(path):</span>
+<span class="c1">#             try:</span>
+<span class="c1">#                 sh(f&quot;rm -f {path}&quot;)</span>
+<span class="c1">#                 _create_path(path)</span>
+<span class="c1">#             except Exception as err:</span>
+<span class="c1">#                 raise RuntimeError(f&quot;Failed to init log file: {err}&quot;)</span>
+
+<span class="c1"># def _add(path: str, verbose: bool = True) -&gt; None:</span>
+<span class="c1">#     past = load(path)</span>
+<span class="c1">#     now = get_processor_usages()</span>
+
+<span class="c1">#     combined = pd.concat([past, now]).round(3)</span>
+<span class="c1">#     save(combined, path, verbose=verbose)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_add</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">verbose</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Appends current resource usage to CSV file.&quot;&quot;&quot;</span>
+    <span class="n">now</span> <span class="o">=</span> <span class="n">get_processor_usages</span><span class="p">()</span>
+
+    <span class="c1"># Append mode without loading entire file</span>
+    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s2">&quot;a&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+        <span class="n">now</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="n">header</span><span class="o">=</span><span class="n">f</span><span class="o">.</span><span class="n">tell</span><span class="p">()</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_ensure_log_file</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">init</span><span class="p">:</span> <span class="nb">bool</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Creates or reinitializes log file with headers.&quot;&quot;&quot;</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_create_path</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+        <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">),</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="c1"># Write only headers</span>
+        <span class="n">headers</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;Timestamp&quot;</span><span class="p">,</span> <span class="s2">&quot;CPU [%]&quot;</span><span class="p">,</span> <span class="s2">&quot;RAM [GiB]&quot;</span><span class="p">,</span> <span class="s2">&quot;GPU [%]&quot;</span><span class="p">,</span> <span class="s2">&quot;VRAM [GiB]&quot;</span><span class="p">]</span>
+        <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">(</span><span class="n">columns</span><span class="o">=</span><span class="n">headers</span><span class="p">)</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+        <span class="n">printc</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2"> created.&quot;</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+        <span class="n">_create_path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+    <span class="k">elif</span> <span class="n">init</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+            <span class="n">_create_path</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Failed to init log file: </span><span class="si">{</span><span class="n">err</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+
+<span class="n">main</span> <span class="o">=</span> <span class="n">log_processor_usages</span>
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="n">main</span><span class="p">()</span>
+
+<span class="c1"># python -c &quot;import scitex; scitex.resource.log_processor_usages(\&quot;/tmp/processor_usages.csv\&quot;, init=True)&quot;</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+  </script> 
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_resource/_machine.html b/src/scitex/_sphinx_html/_modules/scitex_resource/_machine.html
new file mode 100644
index 000000000..c887dc2e2
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+++ b/src/scitex/_sphinx_html/_modules/scitex_resource/_machine.html
@@ -0,0 +1,747 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
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+      <div class="wy-nav-content">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_resource._machine</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_resource._machine</h1><div class="highlight"><pre>
+<span></span><span class="sd">&quot;&quot;&quot;Deprecated alias module — use :mod:`scitex_resource._host` instead.</span>
+
+<span class="sd">This module is kept for back-compat. The canonical API moved to</span>
+<span class="sd">``scitex_resource._host``:</span>
+
+<span class="sd">* :func:`get_machine_name` → :func:`scitex_resource.get_host_name`</span>
+<span class="sd">* :func:`get_machine_config` → :func:`scitex_resource.get_host_config`</span>
+
+<span class="sd">Importing this module still works (no warning at import time so cold</span>
+<span class="sd">import paths stay quiet); the deprecation fires only when the legacy</span>
+<span class="sd">function names are actually called.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="c1"># Re-export the underlying helpers + names used by tests / CLI internals.</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._host</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>  <span class="c1"># noqa: F401</span>
+    <span class="n">_ENV_VAR_LEGACY</span> <span class="k">as</span> <span class="n">_ENV_VAR</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._host</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">_PKG_SHORT</span><span class="p">,</span>
+    <span class="n">_config_paths</span><span class="p">,</span>
+    <span class="n">_load_yaml</span><span class="p">,</span>
+    <span class="n">_short_hostname</span><span class="p">,</span>
+    <span class="n">get_host_config</span><span class="p">,</span>
+    <span class="n">get_host_name</span><span class="p">,</span>
+    <span class="n">load_config</span><span class="p">,</span>
+<span class="p">)</span>
+
+<span class="n">_DEPRECATION_EMITTED</span><span class="p">:</span> <span class="nb">set</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_warn_once</span><span class="p">(</span><span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">replacement</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+    <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">_DEPRECATION_EMITTED</span><span class="p">:</span>
+        <span class="k">return</span>
+    <span class="n">_DEPRECATION_EMITTED</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+        <span class="sa">f</span><span class="s2">&quot;scitex_resource.</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2"> is deprecated; use scitex_resource.</span><span class="si">{</span><span class="n">replacement</span><span class="si">}</span><span class="s2"> instead.&quot;</span><span class="p">,</span>
+        <span class="ne">DeprecationWarning</span><span class="p">,</span>
+        <span class="n">stacklevel</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span>
+    <span class="p">)</span>
+
+
+<div class="viewcode-block" id="get_machine_config">
+<a class="viewcode-back" href="../../source/api/resource.html#scitex.resource.get_machine_config">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_machine_config</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Deprecated alias for :func:`get_host_config`.&quot;&quot;&quot;</span>
+    <span class="n">_warn_once</span><span class="p">(</span><span class="s2">&quot;get_machine_config&quot;</span><span class="p">,</span> <span class="s2">&quot;get_host_config&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">get_host_config</span><span class="p">()</span></div>
+
+
+
+<div class="viewcode-block" id="get_machine_name">
+<a class="viewcode-back" href="../../source/api/resource.html#scitex.resource.get_machine_name">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_machine_name</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Deprecated alias for :func:`get_host_name`.&quot;&quot;&quot;</span>
+    <span class="n">_warn_once</span><span class="p">(</span><span class="s2">&quot;get_machine_name&quot;</span><span class="p">,</span> <span class="s2">&quot;get_host_name&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">get_host_name</span><span class="p">()</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span>
+    <span class="s2">&quot;get_machine_config&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get_machine_name&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get_host_config&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;get_host_name&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;load_config&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;_PKG_SHORT&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;_ENV_VAR&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;_config_paths&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;_load_yaml&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;_short_hostname&quot;</span><span class="p">,</span>
+<span class="p">]</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_resource/_specs/_metrics.html b/src/scitex/_sphinx_html/_modules/scitex_resource/_specs/_metrics.html
new file mode 100644
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+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+      <li class="breadcrumb-item active">scitex_resource._specs._metrics</li>
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+  <h1>Source code for scitex_resource._specs._metrics</h1><div class="highlight"><pre>
+<span></span><span class="sd">&quot;&quot;&quot;Flat, machine-readable resource metrics for monitoring/heartbeat use.</span>
+
+<span class="sd">Companion to ``get_specs()`` (which is rich + human-formatted). ``get_metrics()``</span>
+<span class="sd">returns a flat dict of integers, floats and short strings — the shape any hub,</span>
+<span class="sd">dashboard, or heartbeat producer can ship over the wire without reshaping.</span>
+
+<span class="sd">Cross-platform via ``psutil`` (Linux / macOS / Windows / WSL). Container-aware:</span>
+<span class="sd">inside Docker / cgroups, ``psutil.virtual_memory()`` reports the cgroup limit,</span>
+<span class="sd">not the host kernel&#39;s view, so the numbers reflect what the process can</span>
+<span class="sd">actually use.</span>
+
+<span class="sd">Schema (treat as a public contract; bump minor on rename):</span>
+
+<span class="sd">    cpu_count          int     logical CPU count (psutil.cpu_count())</span>
+<span class="sd">    cpu_model          str     human-readable CPU model name; &quot;&quot; if unknown</span>
+<span class="sd">    load_avg_1m/5m/15m float   POSIX load averages; psutil emulates on Windows</span>
+<span class="sd">    mem_total_mb       int     RAM total in MiB</span>
+<span class="sd">    mem_used_mb        int     &quot;used&quot; excluding cache/buffers (psutil&#39;s notion)</span>
+<span class="sd">    mem_free_mb        int     psutil&#39;s available — what apps can grab now</span>
+<span class="sd">    mem_used_percent   float   psutil.virtual_memory().percent</span>
+<span class="sd">    disk_total_mb      int     home-directory partition total in MiB</span>
+<span class="sd">    disk_used_mb       int     home-directory partition used in MiB</span>
+<span class="sd">    disk_used_percent  float   home-directory partition percent</span>
+<span class="sd">    gpus               list    [{&quot;name&quot;, &quot;vram_total_mb&quot;, &quot;vram_used_mb&quot;}, ...]</span>
+<span class="sd">                               empty list when no NVIDIA GPU / nvidia-smi missing</span>
+
+<span class="sd">The ``gpu=False`` flag skips the ~200 ms ``nvidia-smi`` shellout for hot paths</span>
+<span class="sd">that don&#39;t need GPU info (e.g. 30 s heartbeats on GPU-less hosts).</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">shutil</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">psutil</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_psutil</span>
+
+<span class="n">log</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+
+<div class="viewcode-block" id="get_metrics">
+<a class="viewcode-back" href="../../../source/api/resource.html#scitex.resource.get_metrics">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_metrics</span><span class="p">(</span><span class="n">gpu</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return a flat dict of current system metrics suitable for heartbeats.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    gpu : bool</span>
+<span class="sd">        When ``True`` (default) probe NVIDIA GPUs via ``nvidia-smi``. Set to</span>
+<span class="sd">        ``False`` on hot paths to skip the ~200 ms shellout when you know</span>
+<span class="sd">        there&#39;s no GPU or when you cache GPU info separately.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    dict</span>
+<span class="sd">        See module docstring for the full key list and contract.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">metrics</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;cpu_count&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">cpu_count</span><span class="p">(</span><span class="n">logical</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="ow">or</span> <span class="mi">0</span>
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;cpu_model&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_cpu_model</span><span class="p">()</span>
+
+    <span class="n">load1</span><span class="p">,</span> <span class="n">load5</span><span class="p">,</span> <span class="n">load15</span> <span class="o">=</span> <span class="n">_load_avg</span><span class="p">()</span>
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;load_avg_1m&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">load1</span>
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;load_avg_5m&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">load5</span>
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;load_avg_15m&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">load15</span>
+
+    <span class="n">vm</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">virtual_memory</span><span class="p">()</span>
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;mem_total_mb&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">vm</span><span class="o">.</span><span class="n">total</span> <span class="o">//</span> <span class="p">(</span><span class="mi">1024</span> <span class="o">*</span> <span class="mi">1024</span><span class="p">))</span>
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;mem_used_mb&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">((</span><span class="n">vm</span><span class="o">.</span><span class="n">total</span> <span class="o">-</span> <span class="n">vm</span><span class="o">.</span><span class="n">available</span><span class="p">)</span> <span class="o">//</span> <span class="p">(</span><span class="mi">1024</span> <span class="o">*</span> <span class="mi">1024</span><span class="p">))</span>
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;mem_free_mb&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">vm</span><span class="o">.</span><span class="n">available</span> <span class="o">//</span> <span class="p">(</span><span class="mi">1024</span> <span class="o">*</span> <span class="mi">1024</span><span class="p">))</span>
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;mem_used_percent&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">vm</span><span class="o">.</span><span class="n">percent</span><span class="p">),</span> <span class="mi">1</span><span class="p">)</span>
+
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">du</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">disk_usage</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expanduser</span><span class="p">(</span><span class="s2">&quot;~&quot;</span><span class="p">))</span>
+        <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;disk_total_mb&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">du</span><span class="o">.</span><span class="n">total</span> <span class="o">//</span> <span class="p">(</span><span class="mi">1024</span> <span class="o">*</span> <span class="mi">1024</span><span class="p">))</span>
+        <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;disk_used_mb&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">du</span><span class="o">.</span><span class="n">used</span> <span class="o">//</span> <span class="p">(</span><span class="mi">1024</span> <span class="o">*</span> <span class="mi">1024</span><span class="p">))</span>
+        <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;disk_used_percent&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">du</span><span class="o">.</span><span class="n">percent</span><span class="p">),</span> <span class="mi">1</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
+        <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;disk_total_mb&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;disk_used_mb&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;disk_used_percent&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+
+    <span class="n">metrics</span><span class="p">[</span><span class="s2">&quot;gpus&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_nvidia_gpus</span><span class="p">()</span> <span class="k">if</span> <span class="n">gpu</span> <span class="k">else</span> <span class="p">[]</span>
+
+    <span class="k">return</span> <span class="n">metrics</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_cpu_model</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Cross-platform CPU model string. Empty string if undetectable.&quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">platform</span>
+
+    <span class="k">if</span> <span class="n">platform</span><span class="o">.</span><span class="n">system</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;Linux&quot;</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="s2">&quot;/proc/cpuinfo&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+                <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">f</span><span class="p">:</span>
+                    <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;model name&quot;</span><span class="p">):</span>
+                        <span class="k">return</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;:&quot;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
+            <span class="k">pass</span>
+    <span class="k">if</span> <span class="n">platform</span><span class="o">.</span><span class="n">system</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;Darwin&quot;</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">out</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span>
+                <span class="p">[</span><span class="s2">&quot;sysctl&quot;</span><span class="p">,</span> <span class="s2">&quot;-n&quot;</span><span class="p">,</span> <span class="s2">&quot;machdep.cpu.brand_string&quot;</span><span class="p">],</span>
+                <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">timeout</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+            <span class="p">)</span>
+            <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+        <span class="k">except</span> <span class="p">(</span><span class="ne">OSError</span><span class="p">,</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">SubprocessError</span><span class="p">):</span>
+            <span class="k">pass</span>
+    <span class="k">return</span> <span class="n">platform</span><span class="o">.</span><span class="n">processor</span><span class="p">()</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_load_avg</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;POSIX load averages. psutil emulates on Windows from CPU samples.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">load1</span><span class="p">,</span> <span class="n">load5</span><span class="p">,</span> <span class="n">load15</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">getloadavg</span><span class="p">()</span>
+        <span class="k">return</span> <span class="nb">round</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">load1</span><span class="p">),</span> <span class="mi">2</span><span class="p">),</span> <span class="nb">round</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">load5</span><span class="p">),</span> <span class="mi">2</span><span class="p">),</span> <span class="nb">round</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">load15</span><span class="p">),</span> <span class="mi">2</span><span class="p">)</span>
+    <span class="k">except</span> <span class="p">(</span><span class="ne">OSError</span><span class="p">,</span> <span class="ne">AttributeError</span><span class="p">):</span>
+        <span class="k">return</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_nvidia_gpus</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;List of NVIDIA GPUs via nvidia-smi. Empty list if not available.&quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">shutil</span><span class="o">.</span><span class="n">which</span><span class="p">(</span><span class="s2">&quot;nvidia-smi&quot;</span><span class="p">):</span>
+        <span class="k">return</span> <span class="p">[]</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">out</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span>
+            <span class="p">[</span>
+                <span class="s2">&quot;nvidia-smi&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;--query-gpu=name,memory.total,memory.used&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;--format=csv,noheader,nounits&quot;</span><span class="p">,</span>
+            <span class="p">],</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span>
+        <span class="p">)</span>
+    <span class="k">except</span> <span class="p">(</span><span class="ne">OSError</span><span class="p">,</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">SubprocessError</span><span class="p">):</span>
+        <span class="k">return</span> <span class="p">[]</span>
+    <span class="n">gpus</span><span class="p">:</span> <span class="nb">list</span><span class="p">[</span><span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">out</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">splitlines</span><span class="p">():</span>
+        <span class="n">parts</span> <span class="o">=</span> <span class="p">[</span><span class="n">p</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;,&quot;</span><span class="p">)]</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">parts</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">3</span><span class="p">:</span>
+            <span class="k">continue</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">gpus</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span>
+                    <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="n">parts</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span>
+                    <span class="s2">&quot;vram_total_mb&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">parts</span><span class="p">[</span><span class="mi">1</span><span class="p">]),</span>
+                    <span class="s2">&quot;vram_used_mb&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">parts</span><span class="p">[</span><span class="mi">2</span><span class="p">]),</span>
+                <span class="p">}</span>
+            <span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+            <span class="k">continue</span>
+    <span class="k">return</span> <span class="n">gpus</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_resource/_specs/_processor_usages.html b/src/scitex/_sphinx_html/_modules/scitex_resource/_specs/_processor_usages.html
new file mode 100644
index 000000000..e792e46d1
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+<li class="toctree-l1"><a class="reference internal" href="../../../installation.html">Installation</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_resource._specs._processor_usages</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
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+             
+  <h1>Source code for scitex_resource._specs._processor_usages</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Time-stamp: &quot;2024-11-04 16:12:50 (ywatanabe)&quot;</span>
+<span class="c1"># File: ./scitex_repo/src/scitex/resource/_get_processor_usages.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Functionality:</span>
+<span class="sd">    * Monitors and records system resource utilization (CPU, RAM, GPU, VRAM)</span>
+<span class="sd">Input:</span>
+<span class="sd">    * None (uses system calls and psutil library)</span>
+<span class="sd">Output:</span>
+<span class="sd">    * DataFrame containing resource usage statistics</span>
+<span class="sd">Prerequisites:</span>
+<span class="sd">    * NVIDIA GPU with nvidia-smi installed</span>
+<span class="sd">    * psutil package</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Tuple</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">psutil</span>
+
+
+<div class="viewcode-block" id="get_processor_usages">
+<a class="viewcode-back" href="../../../source/api/resource.html#scitex.resource.get_processor_usages">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_processor_usages</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Gets current system resource usage statistics.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    pd.DataFrame</span>
+<span class="sd">        Resource usage data with columns:</span>
+<span class="sd">        - Timestamp: Timestamp</span>
+<span class="sd">        - CPU [%]: CPU utilization</span>
+<span class="sd">        - RAM [GiB]: RAM usage</span>
+<span class="sd">        - GPU [%]: GPU utilization</span>
+<span class="sd">        - VRAM [GiB]: VRAM usage</span>
+
+<span class="sd">    Example</span>
+<span class="sd">    -------</span>
+<span class="sd">    &gt;&gt;&gt; df = get_proccessor_usages()</span>
+<span class="sd">    &gt;&gt;&gt; print(df)</span>
+<span class="sd">                 Timestamp  CPU [%]  RAM [GiB]  GPU [%]  VRAM [GiB]</span>
+<span class="sd">    0  2024-11-04 10:30:15    25.3      8.2     65.0        4.5</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">cpu_perc</span><span class="p">,</span> <span class="n">ram_gb</span> <span class="o">=</span> <span class="n">_get_cpu_usage</span><span class="p">()</span>
+        <span class="n">gpu_perc</span><span class="p">,</span> <span class="n">vram_gb</span> <span class="o">=</span> <span class="n">_get_gpu_usage</span><span class="p">()</span>
+
+        <span class="n">sr</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">Series</span><span class="p">(</span>
+            <span class="p">{</span>
+                <span class="s2">&quot;Timestamp&quot;</span><span class="p">:</span> <span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">(),</span>
+                <span class="s2">&quot;CPU [%]&quot;</span><span class="p">:</span> <span class="n">cpu_perc</span><span class="p">,</span>
+                <span class="s2">&quot;RAM [GiB]&quot;</span><span class="p">:</span> <span class="n">ram_gb</span><span class="p">,</span>
+                <span class="s2">&quot;GPU [%]&quot;</span><span class="p">:</span> <span class="n">gpu_perc</span><span class="p">,</span>
+                <span class="s2">&quot;VRAM [GiB]&quot;</span><span class="p">:</span> <span class="n">vram_gb</span><span class="p">,</span>
+            <span class="p">}</span>
+        <span class="p">)</span>
+
+        <span class="k">return</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">(</span><span class="n">sr</span><span class="p">)</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span><span class="o">.</span><span class="n">T</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Failed to get resource usage: </span><span class="si">{</span><span class="n">err</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_cpu_usage</span><span class="p">(</span>
+    <span class="n">process</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getpid</span><span class="p">(),</span> <span class="n">n_round</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">1</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Gets CPU and RAM usage statistics.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    process : int, optional</span>
+<span class="sd">        Process ID to monitor</span>
+<span class="sd">    n_round : int, optional</span>
+<span class="sd">        Number of decimal places to round to</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Tuple[float, float]</span>
+<span class="sd">        CPU usage percentage and RAM usage in GiB</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">cpu_usage_perc</span> <span class="o">=</span> <span class="n">psutil</span><span class="o">.</span><span class="n">cpu_percent</span><span class="p">()</span>
+        <span class="n">ram_usage_gb</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="n">psutil</span><span class="o">.</span><span class="n">virtual_memory</span><span class="p">()</span><span class="o">.</span><span class="n">percent</span>
+            <span class="o">/</span> <span class="mi">100</span>
+            <span class="o">*</span> <span class="n">psutil</span><span class="o">.</span><span class="n">virtual_memory</span><span class="p">()</span><span class="o">.</span><span class="n">total</span>
+            <span class="o">/</span> <span class="p">(</span><span class="mi">1024</span><span class="o">**</span><span class="mi">3</span><span class="p">)</span>
+        <span class="p">)</span>
+        <span class="k">return</span> <span class="nb">round</span><span class="p">(</span><span class="n">cpu_usage_perc</span><span class="p">,</span> <span class="n">n_round</span><span class="p">),</span> <span class="nb">round</span><span class="p">(</span><span class="n">ram_usage_gb</span><span class="p">,</span> <span class="n">n_round</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Failed to get CPU/RAM usage: </span><span class="si">{</span><span class="n">err</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_get_gpu_usage</span><span class="p">(</span><span class="n">n_round</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Gets GPU and VRAM usage statistics.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    n_round : int, optional</span>
+<span class="sd">        Number of decimal places to round to</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    Tuple[float, float]</span>
+<span class="sd">        GPU usage percentage and VRAM usage in GiB</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span>
+                <span class="s2">&quot;nvidia-smi&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;--query-gpu=utilization.gpu,memory.used&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;--format=csv,nounits,noheader&quot;</span><span class="p">,</span>
+            <span class="p">],</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">check</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="n">gpu_usage_perc</span><span class="p">,</span> <span class="n">vram_usage_mib</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;,&quot;</span><span class="p">)</span>
+        <span class="n">vram_usage_gb</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">vram_usage_mib</span><span class="p">)</span> <span class="o">/</span> <span class="mi">1024</span>
+        <span class="k">return</span> <span class="nb">round</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">gpu_usage_perc</span><span class="p">),</span> <span class="n">n_round</span><span class="p">),</span> <span class="nb">round</span><span class="p">(</span><span class="n">vram_usage_gb</span><span class="p">,</span> <span class="n">n_round</span><span class="p">)</span>
+    <span class="k">except</span><span class="p">:</span>
+        <span class="k">return</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span>
+    <span class="c1"># except subprocess.CalledProcessError as err:</span>
+    <span class="c1">#     raise RuntimeError(f&quot;Failed to execute nvidia-smi: {err}&quot;)</span>
+    <span class="c1"># except Exception as err:</span>
+    <span class="c1">#     raise RuntimeError(f&quot;Failed to get GPU/VRAM usage: {err}&quot;)</span>
+
+
+<span class="c1"># def _get_gpu_usage(n_round: int = 1) -&gt; Tuple[float, float]:</span>
+<span class="c1">#     &quot;&quot;&quot;Gets GPU and VRAM usage statistics.</span>
+
+<span class="c1">#     Parameters</span>
+<span class="c1">#     ----------</span>
+<span class="c1">#     n_round : int, optional</span>
+<span class="c1">#         Number of decimal places to round to</span>
+
+<span class="c1">#     Returns</span>
+<span class="c1">#     -------</span>
+<span class="c1">#     Tuple[float, float]</span>
+<span class="c1">#         GPU usage percentage and VRAM usage in GiB</span>
+<span class="c1">#     &quot;&quot;&quot;</span>
+<span class="c1">#     try:</span>
+<span class="c1">#         result = subprocess.run(</span>
+<span class="c1">#             [</span>
+<span class="c1">#                 &quot;nvidia-smi&quot;,</span>
+<span class="c1">#                 &quot;--query-gpu=utilization.gpu,memory.used&quot;,</span>
+<span class="c1">#                 &quot;--format=csv,nounits,noheader&quot;,</span>
+<span class="c1">#             ],</span>
+<span class="c1">#             capture_output=True,</span>
+<span class="c1">#             text=True,</span>
+<span class="c1">#             check=True,</span>
+<span class="c1">#         )</span>
+<span class="c1">#         gpu_usage_perc, vram_usage_mib = result.stdout.strip().split(&quot;,&quot;)</span>
+<span class="c1">#         vram_usage_gb = float(vram_usage_mib) / 1024</span>
+<span class="c1">#         return round(float(gpu_usage_perc), n_round), round(vram_usage_gb, n_round)</span>
+<span class="c1">#     except Exception as e:</span>
+<span class="c1">#         print(e)</span>
+<span class="c1">#         return 0.0, 0.0  # Return zeros when nvidia-smi is not available</span>
+
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span>
+
+    <span class="n">CONFIG</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="p">,</span> <span class="n">plt</span><span class="p">,</span> <span class="n">CC</span> <span class="o">=</span> <span class="n">scitex</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">start</span><span class="p">(</span>
+        <span class="n">sys</span><span class="p">,</span> <span class="n">plt</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">False</span>
+    <span class="p">)</span>
+
+    <span class="n">usage</span> <span class="o">=</span> <span class="n">scitex</span><span class="o">.</span><span class="n">resource</span><span class="o">.</span><span class="n">get_processor_usages</span><span class="p">()</span>
+    <span class="n">scitex</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">usage</span><span class="p">,</span> <span class="s2">&quot;usage.csv&quot;</span><span class="p">)</span>
+
+    <span class="n">scitex</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">close</span><span class="p">(</span><span class="n">CONFIG</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">notify</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+
+<span class="c1"># EOF</span>
+
+<span class="c1"># #!/usr/bin/env python3</span>
+<span class="c1"># # -*- coding: utf-8 -*-</span>
+<span class="c1"># # Time-stamp: &quot;2024-11-04 10:27:35 (ywatanabe)&quot;</span>
+<span class="c1"># # File: ./scitex_repo/src/scitex/resource/_get_processor_usages.py</span>
+
+<span class="c1"># &quot;&quot;&quot;</span>
+<span class="c1"># This script does XYZ.</span>
+<span class="c1"># &quot;&quot;&quot;</span>
+
+<span class="c1"># # Functions</span>
+<span class="c1"># import os</span>
+<span class="c1"># import subprocess</span>
+<span class="c1"># import sys</span>
+<span class="c1"># from datetime import datetime</span>
+
+<span class="c1"># import matplotlib.pyplot as plt</span>
+<span class="c1"># import scitex</span>
+<span class="c1"># import pandas as pd</span>
+<span class="c1"># import psutil</span>
+
+
+<span class="c1"># # Functions</span>
+<span class="c1"># def get_processor_usages():</span>
+<span class="c1">#     &quot;&quot;&quot;</span>
+<span class="c1">#     Retrieves the current usage statistics for the CPU, RAM, GPU, and VRAM.</span>
+
+<span class="c1">#     This function fetches the current usage percentages for the CPU and GPU, as well as the current usage in GiB for RAM and VRAM.</span>
+<span class="c1">#     The data is then compiled into a pandas DataFrame with the current timestamp.</span>
+
+<span class="c1">#     Returns:</span>
+<span class="c1">#         pd.DataFrame: A pandas DataFrame containing the current usage statistics with the following columns:</span>
+<span class="c1">#                       - Time: The timestamp when the data was retrieved.</span>
+<span class="c1">#                       - CPU [%]: The CPU usage percentage.</span>
+<span class="c1">#                       - RAM [GiB]: The RAM usage in GiB.</span>
+<span class="c1">#                       - GPU [%]: The GPU usage percentage.</span>
+<span class="c1">#                       - VRAM [GiB]: The VRAM usage in GiB.</span>
+<span class="c1">#                       Each row in the DataFrame represents a single instance of data retrieval, rounded to 1 decimal place.</span>
+
+<span class="c1">#     Example:</span>
+<span class="c1">#         &gt;&gt;&gt; usage_df = get_processor_usages()</span>
+<span class="c1">#         &gt;&gt;&gt; print(usage_df)</span>
+<span class="c1">#     &quot;&quot;&quot;</span>
+<span class="c1">#     cpu_perc, ram_gb = _get_cpu_usage()</span>
+<span class="c1">#     gpu_perc, vram_gb = _get_gpu_usage()</span>
+
+<span class="c1">#     sr = pd.Series(</span>
+<span class="c1">#         {</span>
+<span class="c1">#             &quot;Time&quot;: datetime.now(),</span>
+<span class="c1">#             &quot;CPU [%]&quot;: cpu_perc,</span>
+<span class="c1">#             &quot;RAM [GiB]&quot;: ram_gb,</span>
+<span class="c1">#             &quot;GPU [%]&quot;: gpu_perc,</span>
+<span class="c1">#             &quot;VRAM [GiB]&quot;: vram_gb,</span>
+<span class="c1">#         }</span>
+<span class="c1">#     )</span>
+
+<span class="c1">#     df = pd.DataFrame(sr).round(1).T</span>
+
+<span class="c1">#     return df</span>
+
+
+<span class="c1"># def _get_cpu_usage(process=os.getpid(), n_round=1):</span>
+<span class="c1">#     cpu_usage_perc = psutil.cpu_percent()</span>
+<span class="c1">#     ram_usage_gb = (</span>
+<span class="c1">#         psutil.virtual_memory().percent</span>
+<span class="c1">#         / 100</span>
+<span class="c1">#         * psutil.virtual_memory().total</span>
+<span class="c1">#         / (1024**3)</span>
+<span class="c1">#     )</span>
+<span class="c1">#     return round(cpu_usage_perc, n_round), round(ram_usage_gb, n_round)</span>
+
+
+<span class="c1"># def _get_gpu_usage(n_round=1):</span>
+<span class="c1">#     result = subprocess.run(</span>
+<span class="c1">#         [</span>
+<span class="c1">#             &quot;nvidia-smi&quot;,</span>
+<span class="c1">#             &quot;--query-gpu=utilization.gpu,memory.used&quot;,</span>
+<span class="c1">#             &quot;--format=csv,nounits,noheader&quot;,</span>
+<span class="c1">#         ],</span>
+<span class="c1">#         capture_output=True,</span>
+<span class="c1">#         text=True,</span>
+<span class="c1">#     )</span>
+<span class="c1">#     gpu_usage_perc, _vram_usage_mib = result.stdout.strip().split(&quot;,&quot;)</span>
+<span class="c1">#     vram_usage_gb = float(_vram_usage_mib) / 1024</span>
+<span class="c1">#     return round(float(gpu_usage_perc), n_round), round(</span>
+<span class="c1">#         float(vram_usage_gb), n_round</span>
+<span class="c1">#     )</span>
+
+
+<span class="c1"># # (YOUR AWESOME CODE)</span>
+
+<span class="c1"># if __name__ == &quot;__main__&quot;:</span>
+<span class="c1">#     # Start</span>
+<span class="c1">#     CONFIG, sys.stdout, sys.stderr, plt, CC = scitex.session.start(</span>
+<span class="c1">#         sys, plt, verbose=False</span>
+<span class="c1">#     )</span>
+
+<span class="c1">#     usage = scitex.resource.get_processor_usages()</span>
+<span class="c1">#     scitex.io.save(usage, &quot;usage.csv&quot;)</span>
+
+<span class="c1">#     # Close</span>
+<span class="c1">#     scitex.session.close(CONFIG, verbose=False, notify=False)</span>
+
+<span class="c1">#</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_resource/_specs/_specs.html b/src/scitex/_sphinx_html/_modules/scitex_resource/_specs/_specs.html
new file mode 100644
index 000000000..55775269e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_resource/_specs/_specs.html
@@ -0,0 +1,949 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_resource._specs._specs &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../../genindex.html" />
+    <link rel="search" title="Search" href="../../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../modules/session.html#config-object">CONFIG Object</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../index.html">SciTeX</a>
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+      <div class="wy-nav-content">
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+      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_resource._specs._specs</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_resource._specs._specs</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># Time-stamp: &quot;2024-11-04 14:16:49 (ywatanabe)&quot;</span>
+<span class="c1"># File: ./scitex_repo/src/scitex/resource/_get_specs.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">This script provides detailed system information including system basics, boot time, CPU, memory, disk, network, and custom user environment variables.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">platform</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_platform</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span> <span class="k">as</span> <span class="n">_datetime</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pprint</span><span class="w"> </span><span class="kn">import</span> <span class="n">pprint</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">psutil</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_psutil</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">yaml</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">_yaml</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._compat</span><span class="w"> </span><span class="kn">import</span> <span class="n">readable_bytes</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.._utils._get_env_info</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_env_info</span>
+
+
+<div class="viewcode-block" id="get_specs">
+<a class="viewcode-back" href="../../../source/api/resource.html#scitex.resource.get_specs">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_specs</span><span class="p">(</span>
+    <span class="n">system</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="c1"># boot_time=True,</span>
+    <span class="n">cpu</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="n">gpu</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="n">disk</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="n">network</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="n">yaml</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Collects and returns system specifications including system information, CPU, GPU, disk, and network details.</span>
+
+<span class="sd">    This function gathers various pieces of system information based on the parameters provided. It can return the data in a dictionary format or print it out based on the verbose flag. Additionally, there&#39;s an option to format the output as YAML.</span>
+
+<span class="sd">    Arguments:</span>
+<span class="sd">        system (bool): If True, collects system-wide information such as OS and node name. Default is True.</span>
+<span class="sd">        boot_time (bool): If True, collects system boot time. Currently commented out in the implementation. Default is True.</span>
+<span class="sd">        cpu (bool): If True, collects CPU-specific information including frequency and usage. Default is True.</span>
+<span class="sd">        gpu (bool): If True, collects GPU-specific information. Default is True.</span>
+<span class="sd">        disk (bool): If True, collects disk usage information for all partitions. Default is True.</span>
+<span class="sd">        network (bool): If True, collects network interface and traffic information. Default is True.</span>
+<span class="sd">        verbose (bool): If True, prints the collected information using pprint. Default is False.</span>
+<span class="sd">        yaml (bool): If True, formats the collected information as YAML. This modifies the return type to a YAML formatted string. Default is False.</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        dict or str: By default, returns a dictionary containing the collected system specifications. If `yaml` is True, returns a YAML-formatted string instead.</span>
+
+<span class="sd">    Note:</span>
+<span class="sd">        - The actual collection of system, CPU, GPU, disk, and network information depends on the availability of corresponding libraries and access permissions.</span>
+<span class="sd">        - The `boot_time` argument is currently not used as its corresponding code is commented out.</span>
+<span class="sd">        - The function uses global variables and imports within its scope, which might affect its reusability and testability.</span>
+
+<span class="sd">    Example:</span>
+<span class="sd">        &gt;&gt;&gt; specs = get_specs(verbose=True)</span>
+<span class="sd">        This will print and return the system specifications based on the default parameters.</span>
+
+<span class="sd">    Dependencies:</span>
+<span class="sd">        - This function depends on the `scitex` library for accessing system information and formatting output. Ensure this library is installed and properly configured.</span>
+<span class="sd">        - Python standard libraries: `datetime`, `platform`, `psutil`, `yaml` (optional for YAML output).</span>
+
+<span class="sd">    Raises:</span>
+<span class="sd">        PermissionError: If the function lacks necessary permissions to access certain system information, especially disk and network details.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="c1"># To prevent import errors, _SUPPLE_INFO is collected here.</span>
+    <span class="k">global</span> <span class="n">_SUPPLE_INFO</span>
+    <span class="n">_SUPPLE_INFO</span> <span class="o">=</span> <span class="n">get_env_info</span><span class="p">()</span><span class="o">.</span><span class="n">_asdict</span><span class="p">()</span>
+
+    <span class="n">collected_info</span> <span class="o">=</span> <span class="p">{}</span>  <span class="c1"># OrderedDict()</span>
+
+    <span class="n">collected_info</span><span class="p">[</span><span class="s2">&quot;Collected Time&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">&quot;%Y-%m-</span><span class="si">%d</span><span class="s2"> %H:%M:%S&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">system</span><span class="p">:</span>
+        <span class="n">collected_info</span><span class="p">[</span><span class="s2">&quot;System Information&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_system_info</span><span class="p">()</span>
+    <span class="c1"># if boot_time:</span>
+    <span class="c1">#     collected_info[&quot;Boot Time&quot;] = _boot_time_info()</span>
+    <span class="k">if</span> <span class="n">cpu</span><span class="p">:</span>
+        <span class="n">collected_info</span><span class="p">[</span><span class="s2">&quot;CPU Info&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_cpu_info</span><span class="p">()</span>
+        <span class="n">collected_info</span><span class="p">[</span><span class="s2">&quot;Memory Info&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_memory_info</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">gpu</span><span class="p">:</span>
+        <span class="n">collected_info</span><span class="p">[</span><span class="s2">&quot;GPU Info&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_supple_nvidia_info</span><span class="p">()</span>
+        <span class="c1"># scitex.gen.placeholder()</span>
+    <span class="k">if</span> <span class="n">disk</span><span class="p">:</span>
+        <span class="n">collected_info</span><span class="p">[</span><span class="s2">&quot;Disk Info&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_disk_info</span><span class="p">()</span>
+    <span class="k">if</span> <span class="n">network</span><span class="p">:</span>
+        <span class="n">collected_info</span><span class="p">[</span><span class="s2">&quot;Network Info&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_network_info</span><span class="p">()</span>
+
+    <span class="k">if</span> <span class="n">yaml</span><span class="p">:</span>
+        <span class="n">collected_info</span> <span class="o">=</span> <span class="n">_yaml</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">collected_info</span><span class="p">,</span> <span class="n">sort_keys</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
+        <span class="n">pprint</span><span class="p">(</span><span class="n">collected_info</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">collected_info</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_system_info</span><span class="p">():</span>
+    <span class="n">uname</span> <span class="o">=</span> <span class="n">_platform</span><span class="o">.</span><span class="n">uname</span><span class="p">()</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;OS&quot;</span><span class="p">:</span> <span class="n">_supple_os_info</span><span class="p">()[</span><span class="s2">&quot;os&quot;</span><span class="p">],</span>
+        <span class="c1"># &quot;GCC version&quot;: _supple_os_info()[&quot;gcc_version&quot;],</span>
+        <span class="c1"># &quot;System&quot;: uname.system,</span>
+        <span class="s2">&quot;Node Name&quot;</span><span class="p">:</span> <span class="n">uname</span><span class="o">.</span><span class="n">node</span><span class="p">,</span>
+        <span class="s2">&quot;Release&quot;</span><span class="p">:</span> <span class="n">uname</span><span class="o">.</span><span class="n">release</span><span class="p">,</span>
+        <span class="s2">&quot;Version&quot;</span><span class="p">:</span> <span class="n">uname</span><span class="o">.</span><span class="n">version</span><span class="p">,</span>
+        <span class="c1"># &quot;Machine&quot;: uname.machine,</span>
+        <span class="c1"># &quot;Processor&quot;: uname.processor,</span>
+    <span class="p">}</span>
+
+
+<span class="c1"># def _boot_time_info():</span>
+<span class="c1">#     boot_time_timestamp = _psutil.boot_time()</span>
+<span class="c1">#     bt = _datetime.fromtimestamp(boot_time_timestamp)</span>
+<span class="c1">#     return {</span>
+<span class="c1">#         &quot;Boot Time&quot;: f&quot;{bt.year}-{bt.month:02d}-{bt.day:02d} {bt.hour:02d}:{bt.minute:02d}:{bt.second:02d}&quot;</span>
+<span class="c1">#     }</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_cpu_info</span><span class="p">():</span>
+    <span class="n">cpufreq</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">cpu_freq</span><span class="p">()</span>
+    <span class="n">cpu_usage_per_core</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">cpu_percent</span><span class="p">(</span><span class="n">percpu</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">interval</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;Physical cores&quot;</span><span class="p">:</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">cpu_count</span><span class="p">(</span><span class="n">logical</span><span class="o">=</span><span class="kc">False</span><span class="p">),</span>
+        <span class="s2">&quot;Total cores&quot;</span><span class="p">:</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">cpu_count</span><span class="p">(</span><span class="n">logical</span><span class="o">=</span><span class="kc">True</span><span class="p">),</span>
+        <span class="s2">&quot;Max Frequency&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">cpufreq</span><span class="o">.</span><span class="n">max</span><span class="si">:</span><span class="s2">.2f</span><span class="si">}</span><span class="s2"> MHz&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;Min Frequency&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">cpufreq</span><span class="o">.</span><span class="n">min</span><span class="si">:</span><span class="s2">.2f</span><span class="si">}</span><span class="s2"> MHz&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;Current Frequency&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">cpufreq</span><span class="o">.</span><span class="n">current</span><span class="si">:</span><span class="s2">.2f</span><span class="si">}</span><span class="s2"> MHz&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;CPU Usage Per Core&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="sa">f</span><span class="s2">&quot;Core </span><span class="si">{</span><span class="n">i</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">percentage</span><span class="si">}</span><span class="s2">%&quot;</span>
+            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">percentage</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">cpu_usage_per_core</span><span class="p">)</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;Total CPU Usage&quot;</span><span class="p">:</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">_psutil</span><span class="o">.</span><span class="n">cpu_percent</span><span class="p">()</span><span class="si">}</span><span class="s2">%&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_memory_info</span><span class="p">():</span>
+    <span class="n">svmem</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">virtual_memory</span><span class="p">()</span>
+    <span class="n">swap</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">swap_memory</span><span class="p">()</span>
+
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;Memory&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;Total&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">svmem</span><span class="o">.</span><span class="n">total</span><span class="p">),</span>
+            <span class="s2">&quot;Available&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">svmem</span><span class="o">.</span><span class="n">available</span><span class="p">),</span>
+            <span class="s2">&quot;Used&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">svmem</span><span class="o">.</span><span class="n">used</span><span class="p">),</span>
+            <span class="s2">&quot;Percentage&quot;</span><span class="p">:</span> <span class="n">svmem</span><span class="o">.</span><span class="n">percent</span><span class="p">,</span>
+        <span class="p">},</span>
+        <span class="s2">&quot;SWAP&quot;</span><span class="p">:</span> <span class="p">{</span>
+            <span class="s2">&quot;Total&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">swap</span><span class="o">.</span><span class="n">total</span><span class="p">),</span>
+            <span class="s2">&quot;Free&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">swap</span><span class="o">.</span><span class="n">free</span><span class="p">),</span>
+            <span class="s2">&quot;Used&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">swap</span><span class="o">.</span><span class="n">used</span><span class="p">),</span>
+            <span class="s2">&quot;Percentage&quot;</span><span class="p">:</span> <span class="n">swap</span><span class="o">.</span><span class="n">percent</span><span class="p">,</span>
+        <span class="p">},</span>
+    <span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_disk_info</span><span class="p">():</span>
+    <span class="n">partitions_info</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="n">partitions</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">disk_partitions</span><span class="p">()</span>
+    <span class="k">for</span> <span class="n">partition</span> <span class="ow">in</span> <span class="n">partitions</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">usage</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">disk_usage</span><span class="p">(</span><span class="n">partition</span><span class="o">.</span><span class="n">mountpoint</span><span class="p">)</span>
+            <span class="n">partitions_info</span><span class="p">[</span><span class="n">partition</span><span class="o">.</span><span class="n">device</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
+                <span class="s2">&quot;Mountpoint&quot;</span><span class="p">:</span> <span class="n">partition</span><span class="o">.</span><span class="n">mountpoint</span><span class="p">,</span>
+                <span class="s2">&quot;File system type&quot;</span><span class="p">:</span> <span class="n">partition</span><span class="o">.</span><span class="n">fstype</span><span class="p">,</span>
+                <span class="s2">&quot;Total Size&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">usage</span><span class="o">.</span><span class="n">total</span><span class="p">),</span>
+                <span class="s2">&quot;Used&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">usage</span><span class="o">.</span><span class="n">used</span><span class="p">),</span>
+                <span class="s2">&quot;Free&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">usage</span><span class="o">.</span><span class="n">free</span><span class="p">),</span>
+                <span class="s2">&quot;Percentage&quot;</span><span class="p">:</span> <span class="n">usage</span><span class="o">.</span><span class="n">percent</span><span class="p">,</span>
+            <span class="p">}</span>
+        <span class="k">except</span> <span class="ne">PermissionError</span><span class="p">:</span>
+            <span class="k">continue</span>
+
+    <span class="n">disk_io</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">disk_io_counters</span><span class="p">()</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;Partitions&quot;</span><span class="p">:</span> <span class="n">partitions_info</span><span class="p">,</span>
+        <span class="s2">&quot;Total read&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">disk_io</span><span class="o">.</span><span class="n">read_bytes</span><span class="p">),</span>
+        <span class="s2">&quot;Total write&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">disk_io</span><span class="o">.</span><span class="n">write_bytes</span><span class="p">),</span>
+    <span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_network_info</span><span class="p">():</span>
+    <span class="n">if_addrs</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">net_if_addrs</span><span class="p">()</span>
+    <span class="n">interfaces</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">interface_name</span><span class="p">,</span> <span class="n">interface_addresses</span> <span class="ow">in</span> <span class="n">if_addrs</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="n">interface_info</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">address</span> <span class="ow">in</span> <span class="n">interface_addresses</span><span class="p">:</span>
+            <span class="n">interface_info</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+                <span class="p">{</span>
+                    <span class="c1"># &quot;Address Type&quot;: &quot;IP&quot; if address.family == _psutil.AF_INET else &quot;MAC&quot;,</span>
+                    <span class="s2">&quot;Address&quot;</span><span class="p">:</span> <span class="n">address</span><span class="o">.</span><span class="n">address</span><span class="p">,</span>
+                    <span class="s2">&quot;Netmask&quot;</span><span class="p">:</span> <span class="n">address</span><span class="o">.</span><span class="n">netmask</span><span class="p">,</span>
+                    <span class="s2">&quot;Broadcast&quot;</span><span class="p">:</span> <span class="n">address</span><span class="o">.</span><span class="n">broadcast</span><span class="p">,</span>
+                <span class="p">}</span>
+            <span class="p">)</span>
+        <span class="n">interfaces</span><span class="p">[</span><span class="n">interface_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">interface_info</span>
+
+    <span class="n">net_io</span> <span class="o">=</span> <span class="n">_psutil</span><span class="o">.</span><span class="n">net_io_counters</span><span class="p">()</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;Interfaces&quot;</span><span class="p">:</span> <span class="n">interfaces</span><span class="p">,</span>
+        <span class="s2">&quot;Total Sent&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">net_io</span><span class="o">.</span><span class="n">bytes_sent</span><span class="p">),</span>
+        <span class="s2">&quot;Total Received&quot;</span><span class="p">:</span> <span class="n">readable_bytes</span><span class="p">(</span><span class="n">net_io</span><span class="o">.</span><span class="n">bytes_recv</span><span class="p">),</span>
+    <span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_python_info</span><span class="p">():</span>
+    <span class="k">return</span> <span class="n">_supple_python_info</span><span class="p">()</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_supple_os_info</span><span class="p">():</span>
+    <span class="n">_SUPPLE_OS_KEYS</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="s2">&quot;os&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;gcc_version&quot;</span><span class="p">,</span>
+    <span class="p">]</span>
+    <span class="k">return</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">_SUPPLE_INFO</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">_SUPPLE_OS_KEYS</span><span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_supple_python_info</span><span class="p">():</span>
+    <span class="n">_SUPPLE_PYTHON_KEYS</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="s2">&quot;python_version&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;torch_version&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;is_cuda_available&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;pip_version&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;pip_packages&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;conda_packages&quot;</span><span class="p">,</span>
+    <span class="p">]</span>
+
+    <span class="k">return</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">_SUPPLE_INFO</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">_SUPPLE_PYTHON_KEYS</span><span class="p">}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_supple_nvidia_info</span><span class="p">():</span>
+    <span class="n">_SUPPLE_NVIDIA_KEYS</span> <span class="o">=</span> <span class="p">[</span>
+        <span class="s2">&quot;nvidia_gpu_models&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;nvidia_driver_version&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;cuda_runtime_version&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;cudnn_version&quot;</span><span class="p">,</span>
+    <span class="p">]</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">replace_key</span><span class="p">(</span><span class="n">key</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">key</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">replace_key</span><span class="p">(</span><span class="n">key</span><span class="p">):</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;_&quot;</span><span class="p">,</span> <span class="s2">&quot; &quot;</span><span class="p">)</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;nvidia&quot;</span><span class="p">,</span> <span class="s2">&quot;NVIDIA&quot;</span><span class="p">)</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;gpu&quot;</span><span class="p">,</span> <span class="s2">&quot;GPU&quot;</span><span class="p">)</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;cuda&quot;</span><span class="p">,</span> <span class="s2">&quot;CUDA&quot;</span><span class="p">)</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;cudnn&quot;</span><span class="p">,</span> <span class="s2">&quot;cuDNN&quot;</span><span class="p">)</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;driver&quot;</span><span class="p">,</span> <span class="s2">&quot;Driver&quot;</span><span class="p">)</span>
+        <span class="n">key</span> <span class="o">=</span> <span class="n">key</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;runtime&quot;</span><span class="p">,</span> <span class="s2">&quot;Runtime&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">key</span>
+
+    <span class="k">return</span> <span class="p">{</span><span class="n">replace_key</span><span class="p">(</span><span class="n">k</span><span class="p">):</span> <span class="n">_SUPPLE_INFO</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">_SUPPLE_NVIDIA_KEYS</span><span class="p">}</span>
+
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span>
+
+    <span class="c1"># Start</span>
+    <span class="n">CONFIG</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span><span class="p">,</span> <span class="n">plt</span><span class="p">,</span> <span class="n">CC</span> <span class="o">=</span> <span class="n">scitex</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">start</span><span class="p">(</span><span class="n">sys</span><span class="p">,</span> <span class="n">plt</span><span class="p">)</span>
+
+    <span class="n">info</span> <span class="o">=</span> <span class="n">scitex</span><span class="o">.</span><span class="n">res</span><span class="o">.</span><span class="n">get_specs</span><span class="p">()</span>
+    <span class="n">scitex</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">info</span><span class="p">,</span> <span class="s2">&quot;specs.yaml&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Close</span>
+    <span class="n">scitex</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">close</span><span class="p">(</span><span class="n">CONFIG</span><span class="p">)</span>
+
+<span class="c1"># EOF</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">/home/ywatanabe/proj/entrance/scitex/res/_get_specs.py</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_security.github</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_security.github</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># File: ~/proj/scitex-code/src/scitex/security/github.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">GitHub Security Alerts Module</span>
+
+<span class="sd">Fetches and processes security alerts from GitHub.</span>
+
+<span class="sd">Collaborator injection</span>
+<span class="sd">----------------------</span>
+<span class="sd">Per the SciTeX no-mocks rule (PA-306), the production callables that</span>
+<span class="sd">talk to external collaborators (the ``subprocess`` module, and the</span>
+<span class="sd">in-module ``_run_gh_command``/``check_gh_auth``/``get_*_alerts``</span>
+<span class="sd">helpers) accept keyword-only overrides defaulting to the real module</span>
+<span class="sd">globals. Tests pass real hand-rolled fakes; production code does not</span>
+<span class="sd">pass anything.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">json</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">datetime</span><span class="w"> </span><span class="kn">import</span> <span class="n">datetime</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Callable</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span>
+
+
+<div class="viewcode-block" id="GitHubSecurityError">
+<a class="viewcode-back" href="../../source/api/security.html#scitex.security.GitHubSecurityError">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">GitHubSecurityError</span><span class="p">(</span><span class="ne">Exception</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raised when GitHub security operations fail.&quot;&quot;&quot;</span>
+
+    <span class="k">pass</span></div>
+
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_run_gh_command</span><span class="p">(</span>
+    <span class="n">args</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">],</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">run</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Run GitHub CLI command and return output.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        args: Arguments to pass to ``gh`` (without the ``gh`` prefix).</span>
+<span class="sd">        run: ``subprocess.run``-shaped callable. Defaults to the real</span>
+<span class="sd">            ``subprocess.run``. Override in tests.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">run</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">run</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;gh&quot;</span><span class="p">]</span> <span class="o">+</span> <span class="n">args</span><span class="p">,</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">check</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">stdout</span>
+    <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="n">GitHubSecurityError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;GitHub CLI error: </span><span class="si">{</span><span class="n">e</span><span class="o">.</span><span class="n">stderr</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">FileNotFoundError</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="n">GitHubSecurityError</span><span class="p">(</span>
+            <span class="s2">&quot;GitHub CLI (gh) not found. Install: https://cli.github.com/&quot;</span>
+        <span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">check_gh_auth</span><span class="p">(</span><span class="o">*</span><span class="p">,</span> <span class="n">run</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check if GitHub CLI is authenticated.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        run: ``subprocess.run``-shaped callable. Defaults to the real</span>
+<span class="sd">            ``subprocess.run``. Override in tests.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">run</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">run</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;gh&quot;</span><span class="p">,</span> <span class="s2">&quot;auth&quot;</span><span class="p">,</span> <span class="s2">&quot;status&quot;</span><span class="p">],</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">check</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">return</span> <span class="kc">True</span>
+    <span class="k">except</span> <span class="p">(</span><span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span><span class="p">,</span> <span class="ne">FileNotFoundError</span><span class="p">):</span>
+        <span class="k">return</span> <span class="kc">False</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_secret_alerts</span><span class="p">(</span>
+    <span class="n">repo</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">gh_runner</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span> <span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get secret scanning alerts.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        repo: Repository in format &#39;owner/repo&#39;. If None, uses current repo.</span>
+<span class="sd">        gh_runner: ``_run_gh_command``-shaped callable. Defaults to</span>
+<span class="sd">            :func:`_run_gh_command`. Override in tests.</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        List of secret scanning alerts</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">gh_runner</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">gh_runner</span> <span class="o">=</span> <span class="n">_run_gh_command</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="c1"># Use GitHub REST API for secret scanning</span>
+        <span class="n">api_path</span> <span class="o">=</span> <span class="s2">&quot;/repos/:owner/:repo/secret-scanning/alerts&quot;</span>
+        <span class="k">if</span> <span class="n">repo</span><span class="p">:</span>
+            <span class="n">owner</span><span class="p">,</span> <span class="n">repo_name</span> <span class="o">=</span> <span class="n">repo</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">)</span>
+            <span class="n">api_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;/repos/</span><span class="si">{</span><span class="n">owner</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">repo_name</span><span class="si">}</span><span class="s2">/secret-scanning/alerts&quot;</span>
+
+        <span class="n">output</span> <span class="o">=</span> <span class="n">gh_runner</span><span class="p">(</span>
+            <span class="p">[</span>
+                <span class="s2">&quot;api&quot;</span><span class="p">,</span>
+                <span class="n">api_path</span><span class="p">,</span>
+                <span class="s2">&quot;--paginate&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;--jq&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;.[] | {state, secretType: .secret_type_display_name, &quot;</span>
+                <span class="s2">&quot;url: .html_url, &quot;</span>
+                <span class="s2">&quot;createdAt: .created_at, &quot;</span>
+                <span class="s2">&quot;path: .first_location_detected.path, &quot;</span>
+                <span class="s2">&quot;line: .first_location_detected.start_line}&quot;</span><span class="p">,</span>
+            <span class="p">]</span>
+        <span class="p">)</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">output</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+            <span class="k">return</span> <span class="p">[]</span>
+
+        <span class="c1"># Parse line-delimited JSON</span>
+        <span class="n">alerts</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">output</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+                <span class="n">alerts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">line</span><span class="p">))</span>
+        <span class="k">return</span> <span class="n">alerts</span>
+    <span class="k">except</span> <span class="n">GitHubSecurityError</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_dependabot_alerts</span><span class="p">(</span>
+    <span class="n">repo</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">gh_runner</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span> <span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get Dependabot vulnerability alerts.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        repo: Repository in format &#39;owner/repo&#39;. If None, uses current repo.</span>
+<span class="sd">        gh_runner: ``_run_gh_command``-shaped callable. Defaults to</span>
+<span class="sd">            :func:`_run_gh_command`. Override in tests.</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        List of Dependabot alerts</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">gh_runner</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">gh_runner</span> <span class="o">=</span> <span class="n">_run_gh_command</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="c1"># Use GitHub API to get Dependabot alerts</span>
+        <span class="n">api_path</span> <span class="o">=</span> <span class="s2">&quot;/repos/:owner/:repo/dependabot/alerts&quot;</span>
+        <span class="k">if</span> <span class="n">repo</span><span class="p">:</span>
+            <span class="n">owner</span><span class="p">,</span> <span class="n">repo_name</span> <span class="o">=</span> <span class="n">repo</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">)</span>
+            <span class="n">api_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;/repos/</span><span class="si">{</span><span class="n">owner</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">repo_name</span><span class="si">}</span><span class="s2">/dependabot/alerts&quot;</span>
+
+        <span class="n">output</span> <span class="o">=</span> <span class="n">gh_runner</span><span class="p">(</span>
+            <span class="p">[</span>
+                <span class="s2">&quot;api&quot;</span><span class="p">,</span>
+                <span class="n">api_path</span><span class="p">,</span>
+                <span class="s2">&quot;--paginate&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;--jq&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;.[] | {state, severity: .security_advisory.severity, &quot;</span>
+                <span class="s2">&quot;summary: .security_advisory.summary, &quot;</span>
+                <span class="s2">&quot;package: .dependency.package.name, &quot;</span>
+                <span class="s2">&quot;cve: .security_advisory.cve_id, &quot;</span>
+                <span class="s2">&quot;url: .html_url, &quot;</span>
+                <span class="s2">&quot;created_at: .created_at}&quot;</span><span class="p">,</span>
+            <span class="p">]</span>
+        <span class="p">)</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">output</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+            <span class="k">return</span> <span class="p">[]</span>
+
+        <span class="c1"># Parse line-delimited JSON</span>
+        <span class="n">alerts</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">output</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+                <span class="n">alerts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">line</span><span class="p">))</span>
+        <span class="k">return</span> <span class="n">alerts</span>
+    <span class="k">except</span> <span class="n">GitHubSecurityError</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">get_code_scanning_alerts</span><span class="p">(</span>
+    <span class="n">repo</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">gh_runner</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]],</span> <span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get code scanning alerts.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        repo: Repository in format &#39;owner/repo&#39;. If None, uses current repo.</span>
+<span class="sd">        gh_runner: ``_run_gh_command``-shaped callable. Defaults to</span>
+<span class="sd">            :func:`_run_gh_command`. Override in tests.</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        List of code scanning alerts</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">gh_runner</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">gh_runner</span> <span class="o">=</span> <span class="n">_run_gh_command</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="c1"># Use GitHub API to get code scanning alerts</span>
+        <span class="n">api_path</span> <span class="o">=</span> <span class="s2">&quot;/repos/:owner/:repo/code-scanning/alerts&quot;</span>
+        <span class="k">if</span> <span class="n">repo</span><span class="p">:</span>
+            <span class="n">owner</span><span class="p">,</span> <span class="n">repo_name</span> <span class="o">=</span> <span class="n">repo</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">)</span>
+            <span class="n">api_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;/repos/</span><span class="si">{</span><span class="n">owner</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">repo_name</span><span class="si">}</span><span class="s2">/code-scanning/alerts&quot;</span>
+
+        <span class="n">output</span> <span class="o">=</span> <span class="n">gh_runner</span><span class="p">(</span>
+            <span class="p">[</span>
+                <span class="s2">&quot;api&quot;</span><span class="p">,</span>
+                <span class="n">api_path</span><span class="p">,</span>
+                <span class="s2">&quot;--paginate&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;--jq&quot;</span><span class="p">,</span>
+                <span class="s2">&quot;.[] | {state, severity: .rule.severity, &quot;</span>
+                <span class="s2">&quot;description: .rule.description, &quot;</span>
+                <span class="s2">&quot;location: .most_recent_instance.location.path, &quot;</span>
+                <span class="s2">&quot;line: .most_recent_instance.location.start_line, &quot;</span>
+                <span class="s2">&quot;url: .html_url, &quot;</span>
+                <span class="s2">&quot;created_at: .created_at}&quot;</span><span class="p">,</span>
+            <span class="p">]</span>
+        <span class="p">)</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">output</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+            <span class="k">return</span> <span class="p">[]</span>
+
+        <span class="c1"># Parse line-delimited JSON</span>
+        <span class="n">alerts</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">output</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
+                <span class="n">alerts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">line</span><span class="p">))</span>
+        <span class="k">return</span> <span class="n">alerts</span>
+    <span class="k">except</span> <span class="n">GitHubSecurityError</span><span class="p">:</span>
+        <span class="k">return</span> <span class="p">[]</span>
+
+
+<div class="viewcode-block" id="check_github_alerts">
+<a class="viewcode-back" href="../../source/api/security.html#scitex.security.check_github_alerts">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">check_github_alerts</span><span class="p">(</span>
+    <span class="n">repo</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="o">*</span><span class="p">,</span>
+    <span class="n">auth_check</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[],</span> <span class="nb">bool</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">secrets_fn</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">dependabot_fn</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">code_scanning_fn</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Check all GitHub security alerts.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        repo: Repository in format &#39;owner/repo&#39;. If None, uses current repo.</span>
+<span class="sd">        auth_check: ``check_gh_auth``-shaped callable. Override in tests.</span>
+<span class="sd">        secrets_fn: ``get_secret_alerts``-shaped callable. Override in tests.</span>
+<span class="sd">        dependabot_fn: ``get_dependabot_alerts``-shaped callable. Override in</span>
+<span class="sd">            tests.</span>
+<span class="sd">        code_scanning_fn: ``get_code_scanning_alerts``-shaped callable.</span>
+<span class="sd">            Override in tests.</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Dictionary with keys: &#39;secrets&#39;, &#39;dependabot&#39;, &#39;code_scanning&#39;</span>
+
+<span class="sd">    Raises:</span>
+<span class="sd">        GitHubSecurityError: If GitHub CLI is not installed or not authenticated</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">auth_check</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">auth_check</span> <span class="o">=</span> <span class="n">check_gh_auth</span>
+    <span class="k">if</span> <span class="n">secrets_fn</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">secrets_fn</span> <span class="o">=</span> <span class="n">get_secret_alerts</span>
+    <span class="k">if</span> <span class="n">dependabot_fn</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">dependabot_fn</span> <span class="o">=</span> <span class="n">get_dependabot_alerts</span>
+    <span class="k">if</span> <span class="n">code_scanning_fn</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">code_scanning_fn</span> <span class="o">=</span> <span class="n">get_code_scanning_alerts</span>
+
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">auth_check</span><span class="p">():</span>
+        <span class="k">raise</span> <span class="n">GitHubSecurityError</span><span class="p">(</span>
+            <span class="s2">&quot;Not authenticated with GitHub CLI. Run: gh auth login&quot;</span>
+        <span class="p">)</span>
+
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;secrets&quot;</span><span class="p">:</span> <span class="n">secrets_fn</span><span class="p">(</span><span class="n">repo</span><span class="p">),</span>
+        <span class="s2">&quot;dependabot&quot;</span><span class="p">:</span> <span class="n">dependabot_fn</span><span class="p">(</span><span class="n">repo</span><span class="p">),</span>
+        <span class="s2">&quot;code_scanning&quot;</span><span class="p">:</span> <span class="n">code_scanning_fn</span><span class="p">(</span><span class="n">repo</span><span class="p">),</span>
+    <span class="p">}</span></div>
+
+
+
+<div class="viewcode-block" id="format_alerts_report">
+<a class="viewcode-back" href="../../source/api/security.html#scitex.security.format_alerts_report">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">format_alerts_report</span><span class="p">(</span><span class="n">alerts</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]])</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Format alerts into a readable text report.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        alerts: Dictionary of alerts from check_github_alerts()</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Formatted text report</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">lines</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;=&quot;</span> <span class="o">*</span> <span class="mi">50</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;GitHub Security Alerts Report&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Generated: </span><span class="si">{</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;=&quot;</span> <span class="o">*</span> <span class="mi">50</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Secret scanning alerts</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;### SECRET SCANNING ALERTS ###&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">secrets</span> <span class="o">=</span> <span class="p">[</span><span class="n">s</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">alerts</span><span class="p">[</span><span class="s2">&quot;secrets&quot;</span><span class="p">]</span> <span class="k">if</span> <span class="n">s</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;state&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;open&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">secrets</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">alert</span> <span class="ow">in</span> <span class="n">secrets</span><span class="p">:</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;- [</span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;state&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">] </span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;secretType&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">path</span> <span class="o">=</span> <span class="n">alert</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;path&quot;</span><span class="p">,</span> <span class="s2">&quot;N/A&quot;</span><span class="p">)</span>
+            <span class="n">line_num</span> <span class="o">=</span> <span class="n">alert</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;line&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">path</span> <span class="o">!=</span> <span class="s2">&quot;N/A&quot;</span> <span class="ow">and</span> <span class="n">line_num</span><span class="p">:</span>
+                <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  Location: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">line_num</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  Created: </span><span class="si">{</span><span class="n">alert</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;createdAt&#39;</span><span class="p">,</span><span class="w"> </span><span class="s1">&#39;N/A&#39;</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  URL: </span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;url&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;No open secret scanning alerts&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;=&quot;</span> <span class="o">*</span> <span class="mi">50</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Dependabot alerts</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;### DEPENDABOT VULNERABILITY ALERTS ###&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">dependabot</span> <span class="o">=</span> <span class="p">[</span><span class="n">d</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">alerts</span><span class="p">[</span><span class="s2">&quot;dependabot&quot;</span><span class="p">]</span> <span class="k">if</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;state&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;open&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">dependabot</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">alert</span> <span class="ow">in</span> <span class="n">dependabot</span><span class="p">:</span>
+            <span class="n">severity</span> <span class="o">=</span> <span class="n">alert</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;severity&quot;</span><span class="p">,</span> <span class="s2">&quot;unknown&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;- [</span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;state&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">] </span><span class="si">{</span><span class="n">severity</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;summary&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  Package: </span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;package&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  CVE: </span><span class="si">{</span><span class="n">alert</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;cve&#39;</span><span class="p">)</span><span class="w"> </span><span class="ow">or</span><span class="w"> </span><span class="s1">&#39;N/A&#39;</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  URL: </span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;url&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;No open Dependabot alerts&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;=&quot;</span> <span class="o">*</span> <span class="mi">50</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Code scanning alerts</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;### CODE SCANNING ALERTS ###&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">code_scanning</span> <span class="o">=</span> <span class="p">[</span><span class="n">c</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">alerts</span><span class="p">[</span><span class="s2">&quot;code_scanning&quot;</span><span class="p">]</span> <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;state&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;open&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">code_scanning</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">alert</span> <span class="ow">in</span> <span class="n">code_scanning</span><span class="p">:</span>
+            <span class="n">severity</span> <span class="o">=</span> <span class="n">alert</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;severity&quot;</span><span class="p">,</span> <span class="s2">&quot;unknown&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;- [</span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;state&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">] </span><span class="si">{</span><span class="n">severity</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">location</span> <span class="o">=</span> <span class="n">alert</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;location&quot;</span><span class="p">,</span> <span class="s2">&quot;N/A&quot;</span><span class="p">)</span>
+            <span class="n">line_num</span> <span class="o">=</span> <span class="n">alert</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;line&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
+            <span class="k">if</span> <span class="n">line_num</span><span class="p">:</span>
+                <span class="n">location</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">location</span><span class="si">}</span><span class="s2">:</span><span class="si">{</span><span class="n">line_num</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  Location: </span><span class="si">{</span><span class="n">location</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  URL: </span><span class="si">{</span><span class="n">alert</span><span class="p">[</span><span class="s1">&#39;url&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;No open code scanning alerts&quot;</span><span class="p">)</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;=&quot;</span> <span class="o">*</span> <span class="mi">50</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Summary</span>
+    <span class="n">total</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">secrets</span><span class="p">)</span> <span class="o">+</span> <span class="nb">len</span><span class="p">(</span><span class="n">dependabot</span><span class="p">)</span> <span class="o">+</span> <span class="nb">len</span><span class="p">(</span><span class="n">code_scanning</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;### SUMMARY ###&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Total open alerts: </span><span class="si">{</span><span class="n">total</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  - Secrets: </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">secrets</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  - Dependabot: </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">dependabot</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  - Code Scanning: </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">code_scanning</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">total</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;⚠️  ACTION REQUIRED: Security issues found!&quot;</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;✓ No open security alerts&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="save_alerts_to_file">
+<a class="viewcode-back" href="../../source/api/security.html#scitex.security.save_alerts_to_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">save_alerts_to_file</span><span class="p">(</span>
+    <span class="n">alerts</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="n">Dict</span><span class="p">]],</span>
+    <span class="n">output_dir</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="n">create_symlink</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Save alerts to a timestamped file.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        alerts: Dictionary of alerts from check_github_alerts()</span>
+<span class="sd">        output_dir: Directory to save file. Defaults to ./logs/security</span>
+<span class="sd">        create_symlink: If True, create &#39;security-latest.txt&#39; symlink</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Path to saved file</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">output_dir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">output_dir</span> <span class="o">=</span> <span class="n">Path</span><span class="o">.</span><span class="n">cwd</span><span class="p">()</span> <span class="o">/</span> <span class="s2">&quot;logs&quot;</span> <span class="o">/</span> <span class="s2">&quot;security&quot;</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">output_dir</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">output_dir</span><span class="p">)</span>
+
+    <span class="n">output_dir</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+    <span class="n">timestamp</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">_%H%M%S&quot;</span><span class="p">)</span>
+    <span class="n">output_file</span> <span class="o">=</span> <span class="n">output_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;security-</span><span class="si">{</span><span class="n">timestamp</span><span class="si">}</span><span class="s2">.txt&quot;</span>
+
+    <span class="n">report</span> <span class="o">=</span> <span class="n">format_alerts_report</span><span class="p">(</span><span class="n">alerts</span><span class="p">)</span>
+    <span class="n">output_file</span><span class="o">.</span><span class="n">write_text</span><span class="p">(</span><span class="n">report</span><span class="p">)</span>
+
+    <span class="c1"># Create symlink to latest</span>
+    <span class="k">if</span> <span class="n">create_symlink</span><span class="p">:</span>
+        <span class="n">latest_link</span> <span class="o">=</span> <span class="n">output_dir</span> <span class="o">/</span> <span class="s2">&quot;security-latest.txt&quot;</span>
+        <span class="k">if</span> <span class="n">latest_link</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="ow">or</span> <span class="n">latest_link</span><span class="o">.</span><span class="n">is_symlink</span><span class="p">():</span>
+            <span class="n">latest_link</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
+        <span class="n">latest_link</span><span class="o">.</span><span class="n">symlink_to</span><span class="p">(</span><span class="n">output_file</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="n">output_file</span></div>
+
+
+
+<div class="viewcode-block" id="get_latest_alerts_file">
+<a class="viewcode-back" href="../../source/api/security.html#scitex.security.get_latest_alerts_file">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_latest_alerts_file</span><span class="p">(</span><span class="n">security_dir</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Get path to the latest security alerts file.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        security_dir: Directory containing security files. Defaults to ./logs/security</span>
+
+<span class="sd">    Returns:</span>
+<span class="sd">        Path to latest file, or None if not found</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">security_dir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">security_dir</span> <span class="o">=</span> <span class="n">Path</span><span class="o">.</span><span class="n">cwd</span><span class="p">()</span> <span class="o">/</span> <span class="s2">&quot;logs&quot;</span> <span class="o">/</span> <span class="s2">&quot;security&quot;</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">security_dir</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">security_dir</span><span class="p">)</span>
+
+    <span class="n">latest_link</span> <span class="o">=</span> <span class="n">security_dir</span> <span class="o">/</span> <span class="s2">&quot;security-latest.txt&quot;</span>
+    <span class="k">if</span> <span class="n">latest_link</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+        <span class="k">return</span> <span class="n">latest_link</span>
+
+    <span class="c1"># Fallback: find most recent file</span>
+    <span class="n">files</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">security_dir</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s2">&quot;security-*.txt&quot;</span><span class="p">),</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">files</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">if</span> <span class="n">files</span> <span class="k">else</span> <span class="kc">None</span></div>
+
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_ui.html b/src/scitex/_sphinx_html/_modules/scitex_ui.html
new file mode 100644
index 000000000..63e3b5dc5
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_ui.html
@@ -0,0 +1,741 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_ui &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_ui</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_ui</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;scitex-ui — Shared frontend UI components for the SciTeX ecosystem.</span>
+
+<span class="sd">Components ship as TypeScript + CSS static assets, discoverable by Django&#39;s</span>
+<span class="sd">AppDirectoriesFinder when added to INSTALLED_APPS.</span>
+
+<span class="sd">Python API provides component metadata and registration.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">importlib.metadata</span><span class="w"> </span><span class="kn">import</span> <span class="n">version</span> <span class="k">as</span> <span class="n">_v</span><span class="p">,</span> <span class="n">PackageNotFoundError</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">__version__</span> <span class="o">=</span> <span class="n">_v</span><span class="p">(</span><span class="s2">&quot;scitex-ui&quot;</span><span class="p">)</span>
+    <span class="k">except</span> <span class="n">PackageNotFoundError</span><span class="p">:</span>
+        <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0+local&quot;</span>
+    <span class="k">del</span> <span class="n">_v</span><span class="p">,</span> <span class="n">PackageNotFoundError</span>
+<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>  <span class="c1"># pragma: no cover — only on ancient Pythons</span>
+    <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0+local&quot;</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span> <span class="k">as</span> <span class="n">_Path</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._registry</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_component</span><span class="p">,</span> <span class="n">list_components</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._registry</span><span class="w"> </span><span class="kn">import</span> <span class="n">register_component</span> <span class="k">as</span> <span class="n">_register_component</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">.</span><span class="w"> </span><span class="kn">import</span> <span class="n">_components</span>  <span class="c1"># noqa: F401 — triggers registration</span>
+
+<span class="c1"># Advanced: re-export for custom component authors</span>
+<span class="n">register_component</span> <span class="o">=</span> <span class="n">_register_component</span>
+
+
+<div class="viewcode-block" id="get_static_dir">
+<a class="viewcode-back" href="../source/api/ui.html#scitex.ui.get_static_dir">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_static_dir</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">_Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the absolute path to scitex_ui&#39;s static asset directory.</span>
+
+<span class="sd">    This is the directory containing ``css/`` and ``ts/`` subdirectories.</span>
+<span class="sd">    Works for both pip-installed packages and editable (dev) installs.</span>
+
+<span class="sd">    Useful for build tools (Vite, Webpack) that need to resolve</span>
+<span class="sd">    scitex-ui source files at build time.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    pathlib.Path</span>
+<span class="sd">        e.g. ``/usr/lib/python3.11/.../scitex_ui/static/scitex_ui``</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_Path</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span><span class="o">.</span><span class="n">parent</span> <span class="o">/</span> <span class="s2">&quot;static&quot;</span> <span class="o">/</span> <span class="s2">&quot;scitex_ui&quot;</span></div>
+
+
+
+<div class="viewcode-block" id="get_docs_path">
+<a class="viewcode-back" href="../source/api/ui.html#scitex.ui.get_docs_path">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_docs_path</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">_Path</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return the absolute path to scitex_ui&#39;s bundled documentation directory.</span>
+
+<span class="sd">    The directory contains ``APP_DEVELOPER_GUIDE.md`` and the Sphinx-built</span>
+<span class="sd">    HTML docs. Works for both pip-installed packages and editable (dev) installs.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    pathlib.Path</span>
+<span class="sd">        e.g. ``/usr/lib/python3.11/.../scitex_ui/_docs``</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_Path</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span><span class="o">.</span><span class="n">parent</span> <span class="o">/</span> <span class="s2">&quot;_sphinx_html&quot;</span></div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;__version__&quot;</span><span class="p">,</span> <span class="s2">&quot;get_component&quot;</span><span class="p">,</span> <span class="s2">&quot;list_components&quot;</span><span class="p">,</span> <span class="s2">&quot;get_static_dir&quot;</span><span class="p">,</span> <span class="s2">&quot;get_docs_path&quot;</span><span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_ui/_registry.html b/src/scitex/_sphinx_html/_modules/scitex_ui/_registry.html
new file mode 100644
index 000000000..3f6178be5
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_ui/_registry.html
@@ -0,0 +1,700 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_ui._registry &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+            SciTeX
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+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+          <li class="breadcrumb-item"><a href="../scitex_ui.html">scitex_ui</a></li>
+      <li class="breadcrumb-item active">scitex_ui._registry</li>
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+  <h1>Source code for scitex_ui._registry</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="sd">&quot;&quot;&quot;Component metadata registry.&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Optional</span>
+
+<span class="n">_COMPONENTS</span><span class="p">:</span> <span class="nb">dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">register_component</span><span class="p">(</span><span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">metadata</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Register a frontend component&#39;s metadata.&quot;&quot;&quot;</span>
+    <span class="n">_COMPONENTS</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">metadata</span>
+
+
+<div class="viewcode-block" id="get_component">
+<a class="viewcode-back" href="../../source/api/ui.html#scitex.ui.get_component">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_component</span><span class="p">(</span><span class="n">name</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Any</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get metadata for a registered component.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">_COMPONENTS</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span></div>
+
+
+
+<div class="viewcode-block" id="list_components">
+<a class="viewcode-back" href="../../source/api/ui.html#scitex.ui.list_components">[docs]</a>
+<span class="k">def</span><span class="w"> </span><span class="nf">list_components</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;List all registered component names.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">_COMPONENTS</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span></div>
+
+</pre></div>
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/results/_CompilationResult.html b/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/results/_CompilationResult.html
new file mode 100644
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+++ b/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/results/_CompilationResult.html
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
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+          <li class="breadcrumb-item"><a href="../../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_writer._dataclasses.results._CompilationResult</li>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_writer._dataclasses.results._CompilationResult</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># File: src/scitex_writer/_dataclasses/results/_CompilationResult.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">CompilationResult - dataclass for LaTeX compilation results.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span><span class="p">,</span> <span class="n">field</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span>
+
+
+<div class="viewcode-block" id="CompilationResult">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.CompilationResult">[docs]</a>
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">CompilationResult</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Result of LaTeX compilation.&quot;&quot;&quot;</span>
+
+    <span class="n">success</span><span class="p">:</span> <span class="nb">bool</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Whether compilation succeeded (exit code 0)&quot;&quot;&quot;</span>
+
+    <span class="n">exit_code</span><span class="p">:</span> <span class="nb">int</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Process exit code&quot;&quot;&quot;</span>
+
+    <span class="n">stdout</span><span class="p">:</span> <span class="nb">str</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Standard output from compilation&quot;&quot;&quot;</span>
+
+    <span class="n">stderr</span><span class="p">:</span> <span class="nb">str</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Standard error from compilation&quot;&quot;&quot;</span>
+
+    <span class="n">output_pdf</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Path to generated PDF (if successful)&quot;&quot;&quot;</span>
+
+    <span class="n">diff_pdf</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Path to diff PDF with tracked changes (if generated)&quot;&quot;&quot;</span>
+
+    <span class="n">log_file</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Path to compilation log file&quot;&quot;&quot;</span>
+
+    <span class="n">duration</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mf">0.0</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Compilation duration in seconds&quot;&quot;&quot;</span>
+
+    <span class="n">errors</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parsed LaTeX errors (if any)&quot;&quot;&quot;</span>
+
+    <span class="n">warnings</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">field</span><span class="p">(</span><span class="n">default_factory</span><span class="o">=</span><span class="nb">list</span><span class="p">)</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Parsed LaTeX warnings (if any)&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="CompilationResult.__str__">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.CompilationResult.__str__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Human-readable summary.&quot;&quot;&quot;</span>
+        <span class="n">status</span> <span class="o">=</span> <span class="s2">&quot;SUCCESS&quot;</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">success</span> <span class="k">else</span> <span class="s2">&quot;FAILED&quot;</span>
+        <span class="n">lines</span> <span class="o">=</span> <span class="p">[</span>
+            <span class="sa">f</span><span class="s2">&quot;Compilation </span><span class="si">{</span><span class="n">status</span><span class="si">}</span><span class="s2"> (exit code: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">exit_code</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">,</span>
+            <span class="sa">f</span><span class="s2">&quot;Duration: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">duration</span><span class="si">:</span><span class="s2">.2f</span><span class="si">}</span><span class="s2">s&quot;</span><span class="p">,</span>
+        <span class="p">]</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">output_pdf</span><span class="p">:</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Output: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">errors</span><span class="p">:</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Errors: </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">errors</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">warnings</span><span class="p">:</span>
+            <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Warnings: </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">warnings</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span></div>
+</div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;CompilationResult&quot;</span><span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html b/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html
new file mode 100644
index 000000000..40d372a49
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html
@@ -0,0 +1,758 @@
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
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+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
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+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
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+          <li class="breadcrumb-item"><a href="../../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_writer._dataclasses.tree._ManuscriptTree</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
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+             
+  <h1>Source code for scitex_writer._dataclasses.tree._ManuscriptTree</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># File: src/scitex_writer/_dataclasses/tree/_ManuscriptTree.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">ManuscriptTree - dataclass for manuscript directory structure.</span>
+
+<span class="sd">Represents the 01_manuscript/ directory with all subdirectories.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">..contents</span><span class="w"> </span><span class="kn">import</span> <span class="n">ManuscriptContents</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">..core</span><span class="w"> </span><span class="kn">import</span> <span class="n">DocumentSection</span>
+
+
+<div class="viewcode-block" id="ManuscriptTree">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.ManuscriptTree">[docs]</a>
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">ManuscriptTree</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Manuscript directory structure (01_manuscript/).&quot;&quot;&quot;</span>
+
+    <span class="n">root</span><span class="p">:</span> <span class="n">Path</span>
+    <span class="n">git_root</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Contents subdirectory</span>
+    <span class="n">contents</span><span class="p">:</span> <span class="n">ManuscriptContents</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Root level files</span>
+    <span class="n">base</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">readme</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Directories</span>
+    <span class="n">archive</span><span class="p">:</span> <span class="n">Path</span> <span class="o">=</span> <span class="kc">None</span>
+
+<div class="viewcode-block" id="ManuscriptTree.__post_init__">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.ManuscriptTree.__post_init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">__post_init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Initialize all instances.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">contents</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">contents</span> <span class="o">=</span> <span class="n">ManuscriptContents</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;contents&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">base</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;base.tex&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">readme</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">readme</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;README.md&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">archive</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">archive</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;archive&quot;</span></div>
+
+
+<div class="viewcode-block" id="ManuscriptTree.verify_structure">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.ManuscriptTree.verify_structure">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">verify_structure</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">[</span><span class="nb">bool</span><span class="p">,</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Verify manuscript structure has required components.</span>
+
+<span class="sd">        Returns:</span>
+<span class="sd">            (is_valid, list_of_missing_items_with_paths)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">missing</span> <span class="o">=</span> <span class="p">[]</span>
+
+        <span class="c1"># Check contents structure</span>
+        <span class="n">contents_valid</span><span class="p">,</span> <span class="n">contents_missing</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">contents</span><span class="o">.</span><span class="n">verify_structure</span><span class="p">()</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">contents_valid</span><span class="p">:</span>
+            <span class="c1"># Contents already includes full paths, just pass them through</span>
+            <span class="n">missing</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">contents_missing</span><span class="p">)</span>
+
+        <span class="c1"># Check root level files</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">expected_path</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relative_to</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+                <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span>
+            <span class="p">)</span>
+            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;base.tex (expected at: </span><span class="si">{</span><span class="n">expected_path</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span> <span class="n">missing</span></div>
+</div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;ManuscriptTree&quot;</span><span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
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+
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html b/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html
new file mode 100644
index 000000000..638738086
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html
@@ -0,0 +1,771 @@
+
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
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+        </div>
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+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../../index.html">SciTeX</a>
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+      <li><a href="../../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_writer._dataclasses.tree._RevisionTree</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_writer._dataclasses.tree._RevisionTree</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># File: src/scitex_writer/_dataclasses/tree/_RevisionTree.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">RevisionTree - dataclass for revision directory structure.</span>
+
+<span class="sd">Represents the 03_revision/ directory with all subdirectories.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">..contents</span><span class="w"> </span><span class="kn">import</span> <span class="n">RevisionContents</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">..core</span><span class="w"> </span><span class="kn">import</span> <span class="n">DocumentSection</span>
+
+
+<div class="viewcode-block" id="RevisionTree">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.RevisionTree">[docs]</a>
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">RevisionTree</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Revision directory structure (03_revision/).&quot;&quot;&quot;</span>
+
+    <span class="n">root</span><span class="p">:</span> <span class="n">Path</span>
+    <span class="n">git_root</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Contents subdirectory</span>
+    <span class="n">contents</span><span class="p">:</span> <span class="n">RevisionContents</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Root level files</span>
+    <span class="n">base</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">revision</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">readme</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Directories</span>
+    <span class="n">archive</span><span class="p">:</span> <span class="n">Path</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">docs</span><span class="p">:</span> <span class="n">Path</span> <span class="o">=</span> <span class="kc">None</span>
+
+<div class="viewcode-block" id="RevisionTree.__post_init__">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.RevisionTree.__post_init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">__post_init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Initialize all instances.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">contents</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">contents</span> <span class="o">=</span> <span class="n">RevisionContents</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;contents&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">base</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;base.tex&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">revision</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">revision</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;revision.tex&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">readme</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">readme</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;README.md&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">archive</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">archive</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;archive&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">docs</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">docs</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;docs&quot;</span></div>
+
+
+<div class="viewcode-block" id="RevisionTree.verify_structure">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.RevisionTree.verify_structure">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">verify_structure</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">[</span><span class="nb">bool</span><span class="p">,</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Verify revision structure has required components.</span>
+
+<span class="sd">        Returns:</span>
+<span class="sd">            (is_valid, list_of_missing_items_with_paths)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">missing</span> <span class="o">=</span> <span class="p">[]</span>
+
+        <span class="c1"># Check contents structure</span>
+        <span class="n">contents_valid</span><span class="p">,</span> <span class="n">contents_issues</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">contents</span><span class="o">.</span><span class="n">verify_structure</span><span class="p">()</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">contents_valid</span><span class="p">:</span>
+            <span class="c1"># Contents already includes full paths, just pass them through</span>
+            <span class="n">missing</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">contents_issues</span><span class="p">)</span>
+
+        <span class="c1"># Check root level files</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">expected_path</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relative_to</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+                <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span>
+            <span class="p">)</span>
+            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;base.tex (expected at: </span><span class="si">{</span><span class="n">expected_path</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">revision</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">expected_path</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">revision</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relative_to</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+                <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">revision</span><span class="o">.</span><span class="n">path</span>
+            <span class="p">)</span>
+            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;revision.tex (expected at: </span><span class="si">{</span><span class="n">expected_path</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span> <span class="n">missing</span></div>
+</div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;RevisionTree&quot;</span><span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html b/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html
new file mode 100644
index 000000000..d6e3a7426
--- /dev/null
+++ b/src/scitex/_sphinx_html/_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html
@@ -0,0 +1,775 @@
+
+
+<!DOCTYPE html>
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_writer._dataclasses.tree._SupplementaryTree &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=b86133f3" />
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
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+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
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+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
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+        </div>
+      </div>
+    </nav>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../../../index.html">SciTeX</a>
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+      <li><a href="../../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../../../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_writer._dataclasses.tree._SupplementaryTree</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_writer._dataclasses.tree._SupplementaryTree</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># File: src/scitex_writer/_dataclasses/tree/_SupplementaryTree.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">SupplementaryTree - dataclass for supplementary directory structure.</span>
+
+<span class="sd">Represents the 02_supplementary/ directory with all subdirectories.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">dataclass</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">..contents</span><span class="w"> </span><span class="kn">import</span> <span class="n">SupplementaryContents</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">..core</span><span class="w"> </span><span class="kn">import</span> <span class="n">DocumentSection</span>
+
+
+<div class="viewcode-block" id="SupplementaryTree">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.SupplementaryTree">[docs]</a>
+<span class="nd">@dataclass</span>
+<span class="k">class</span><span class="w"> </span><span class="nc">SupplementaryTree</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Supplementary directory structure (02_supplementary/).&quot;&quot;&quot;</span>
+
+    <span class="n">root</span><span class="p">:</span> <span class="n">Path</span>
+    <span class="n">git_root</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Contents subdirectory</span>
+    <span class="n">contents</span><span class="p">:</span> <span class="n">SupplementaryContents</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Root level files</span>
+    <span class="n">base</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">supplementary</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">supplementary_diff</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="n">readme</span><span class="p">:</span> <span class="n">DocumentSection</span> <span class="o">=</span> <span class="kc">None</span>
+
+    <span class="c1"># Directories</span>
+    <span class="n">archive</span><span class="p">:</span> <span class="n">Path</span> <span class="o">=</span> <span class="kc">None</span>
+
+<div class="viewcode-block" id="SupplementaryTree.__post_init__">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.SupplementaryTree.__post_init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">__post_init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Initialize all instances.&quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">contents</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">contents</span> <span class="o">=</span> <span class="n">SupplementaryContents</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;contents&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">base</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;base.tex&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">supplementary</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">supplementary</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;supplementary.tex&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+            <span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">supplementary_diff</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">supplementary_diff</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;supplementary_diff.tex&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+            <span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">readme</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">readme</span> <span class="o">=</span> <span class="n">DocumentSection</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;README.md&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">archive</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">archive</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">root</span> <span class="o">/</span> <span class="s2">&quot;archive&quot;</span></div>
+
+
+<div class="viewcode-block" id="SupplementaryTree.verify_structure">
+<a class="viewcode-back" href="../../../../source/api/writer.html#scitex.writer.SupplementaryTree.verify_structure">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">verify_structure</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">[</span><span class="nb">bool</span><span class="p">,</span> <span class="nb">list</span><span class="p">[</span><span class="nb">str</span><span class="p">]]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Verify supplementary structure has required components.</span>
+
+<span class="sd">        Returns:</span>
+<span class="sd">            (is_valid, list_of_missing_items_with_paths)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">missing</span> <span class="o">=</span> <span class="p">[]</span>
+
+        <span class="c1"># Check contents structure</span>
+        <span class="n">contents_valid</span><span class="p">,</span> <span class="n">contents_issues</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">contents</span><span class="o">.</span><span class="n">verify_structure</span><span class="p">()</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">contents_valid</span><span class="p">:</span>
+            <span class="c1"># Contents already includes full paths, just pass them through</span>
+            <span class="n">missing</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">contents_issues</span><span class="p">)</span>
+
+        <span class="c1"># Check root level files</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">expected_path</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relative_to</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+                <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">base</span><span class="o">.</span><span class="n">path</span>
+            <span class="p">)</span>
+            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;base.tex (expected at: </span><span class="si">{</span><span class="n">expected_path</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">supplementary</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">expected_path</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">supplementary</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relative_to</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+                <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">supplementary</span><span class="o">.</span><span class="n">path</span>
+            <span class="p">)</span>
+            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;supplementary.tex (expected at: </span><span class="si">{</span><span class="n">expected_path</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span> <span class="n">missing</span></div>
+</div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;SupplementaryTree&quot;</span><span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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diff --git a/src/scitex/_sphinx_html/_modules/scitex_writer/writer.html b/src/scitex/_sphinx_html/_modules/scitex_writer/writer.html
new file mode 100644
index 000000000..076a9d8dc
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+++ b/src/scitex/_sphinx_html/_modules/scitex_writer/writer.html
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+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex_writer.writer &mdash; SciTeX v0.0.0</title>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">scitex_writer.writer</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <h1>Source code for scitex_writer.writer</h1><div class="highlight"><pre>
+<span></span><span class="ch">#!/usr/bin/env python3</span>
+<span class="c1"># -*- coding: utf-8 -*-</span>
+<span class="c1"># File: src/scitex_writer/writer.py</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Writer class for manuscript LaTeX compilation.</span>
+
+<span class="sd">Provides object-oriented interface to scitex-writer functionality.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">__future__</span><span class="w"> </span><span class="kn">import</span> <span class="n">annotations</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">logging</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">shutil</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">subprocess</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Callable</span><span class="p">,</span> <span class="n">Optional</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">._compile</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+    <span class="n">CompilationResult</span><span class="p">,</span>
+    <span class="n">compile_manuscript</span><span class="p">,</span>
+    <span class="n">compile_revision</span><span class="p">,</span>
+    <span class="n">compile_supplementary</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._dataclasses</span><span class="w"> </span><span class="kn">import</span> <span class="n">ManuscriptTree</span><span class="p">,</span> <span class="n">RevisionTree</span><span class="p">,</span> <span class="n">SupplementaryTree</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._dataclasses.config</span><span class="w"> </span><span class="kn">import</span> <span class="n">DOC_TYPE_DIRS</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._dataclasses.tree</span><span class="w"> </span><span class="kn">import</span> <span class="n">ScriptsTree</span><span class="p">,</span> <span class="n">SharedTree</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._project._create</span><span class="w"> </span><span class="kn">import</span> <span class="n">clone_writer_project</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">._utils._watch</span><span class="w"> </span><span class="kn">import</span> <span class="n">watch_manuscript</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+
+
+<span class="k">def</span><span class="w"> </span><span class="nf">_find_git_root</span><span class="p">(</span><span class="n">project_dir</span><span class="p">:</span> <span class="n">Path</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Find git root for project directory.&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+            <span class="p">[</span><span class="s2">&quot;git&quot;</span><span class="p">,</span> <span class="s2">&quot;rev-parse&quot;</span><span class="p">,</span> <span class="s2">&quot;--show-toplevel&quot;</span><span class="p">],</span>
+            <span class="n">cwd</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">project_dir</span><span class="p">),</span>
+            <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">text</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">returncode</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">Path</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
+    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+        <span class="k">pass</span>
+    <span class="k">return</span> <span class="kc">None</span>
+
+
+<div class="viewcode-block" id="Writer">
+<a class="viewcode-back" href="../../source/api/writer.html#scitex.writer.Writer">[docs]</a>
+<span class="k">class</span><span class="w"> </span><span class="nc">Writer</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;LaTeX manuscript compiler.&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="Writer.__init__">
+<a class="viewcode-back" href="../../source/api/writer.html#scitex.writer.Writer.__init__">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">project_dir</span><span class="p">:</span> <span class="n">Path</span><span class="p">,</span>
+        <span class="n">name</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">git_strategy</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;child&quot;</span><span class="p">,</span>
+        <span class="n">branch</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">tag</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Initialize for project directory.</span>
+
+<span class="sd">        If directory doesn&#39;t exist, creates new project.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        project_dir : Path</span>
+<span class="sd">            Path to project directory.</span>
+<span class="sd">        name : str, optional</span>
+<span class="sd">            Project name (used if creating new project).</span>
+<span class="sd">        git_strategy : str, optional</span>
+<span class="sd">            Git initialization strategy:</span>
+<span class="sd">            - &#39;child&#39;: Create isolated git in project directory (default)</span>
+<span class="sd">            - &#39;parent&#39;: Use parent git repository</span>
+<span class="sd">            - &#39;origin&#39;: Preserve template&#39;s original git history</span>
+<span class="sd">            - None or &#39;none&#39;: Disable git initialization</span>
+<span class="sd">        branch : str, optional</span>
+<span class="sd">            Specific branch of template repository to clone.</span>
+<span class="sd">            If None, clones the default branch. Mutually exclusive with tag.</span>
+<span class="sd">        tag : str, optional</span>
+<span class="sd">            Specific tag/release of template repository to clone.</span>
+<span class="sd">            If None, clones the default branch. Mutually exclusive with branch.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">project_name</span> <span class="o">=</span> <span class="n">name</span> <span class="ow">or</span> <span class="n">Path</span><span class="p">(</span><span class="n">project_dir</span><span class="p">)</span><span class="o">.</span><span class="n">name</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">project_dir</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">git_strategy</span> <span class="o">=</span> <span class="n">git_strategy</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">branch</span> <span class="o">=</span> <span class="n">branch</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">tag</span>
+
+        <span class="n">ref_info</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+        <span class="k">if</span> <span class="n">branch</span><span class="p">:</span>
+            <span class="n">ref_info</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot; (branch: </span><span class="si">{</span><span class="n">branch</span><span class="si">}</span><span class="s2">)&quot;</span>
+        <span class="k">elif</span> <span class="n">tag</span><span class="p">:</span>
+            <span class="n">ref_info</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot; (tag: </span><span class="si">{</span><span class="n">tag</span><span class="si">}</span><span class="s2">)&quot;</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Writer: Initializing with:</span><span class="se">\n</span><span class="s2">&quot;</span>
+            <span class="sa">f</span><span class="s2">&quot;    Project Name: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_name</span><span class="si">}</span><span class="se">\n</span><span class="s2">&quot;</span>
+            <span class="sa">f</span><span class="s2">&quot;    Project Directory: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="si">}</span><span class="se">\n</span><span class="s2">&quot;</span>
+            <span class="sa">f</span><span class="s2">&quot;    Git Strategy: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">git_strategy</span><span class="si">}{</span><span class="n">ref_info</span><span class="si">}</span><span class="s2">...&quot;</span>
+        <span class="p">)</span>
+
+        <span class="c1"># Create or attach to project</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_attach_or_create_project</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+
+        <span class="c1"># Find git root (may be the project dir or a parent)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">git_root</span> <span class="o">=</span> <span class="n">_find_git_root</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="p">)</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span>
+
+        <span class="c1"># Document accessors (pass git_root for efficiency)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">shared</span> <span class="o">=</span> <span class="n">SharedTree</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="s2">&quot;00_shared&quot;</span><span class="p">,</span> <span class="n">git_root</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">manuscript</span> <span class="o">=</span> <span class="n">ManuscriptTree</span><span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="s2">&quot;01_manuscript&quot;</span><span class="p">,</span> <span class="n">git_root</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+        <span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">supplementary</span> <span class="o">=</span> <span class="n">SupplementaryTree</span><span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="s2">&quot;02_supplementary&quot;</span><span class="p">,</span> <span class="n">git_root</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+        <span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">revision</span> <span class="o">=</span> <span class="n">RevisionTree</span><span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="s2">&quot;03_revision&quot;</span><span class="p">,</span> <span class="n">git_root</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span>
+        <span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">scripts</span> <span class="o">=</span> <span class="n">ScriptsTree</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="s2">&quot;scripts&quot;</span><span class="p">,</span> <span class="n">git_root</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">git_root</span><span class="p">)</span>
+
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Writer: Initialization complete for </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_name</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span></div>
+
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_attach_or_create_project</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Path</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Create new project or attach to existing one.</span>
+
+<span class="sd">        If project directory doesn&#39;t exist, creates it based on git_strategy:</span>
+<span class="sd">        - &#39;child&#39;: Full template with git initialization</span>
+<span class="sd">        - &#39;parent&#39;/&#39;None&#39;: Minimal directory structure</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        name : str, optional</span>
+<span class="sd">            Project name (used if creating new project).</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        Path</span>
+<span class="sd">            Path to the project directory.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Writer: Attached to existing project at </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+            <span class="c1"># Verify existing project structure</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">_verify_project_structure</span><span class="p">()</span>
+            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span>
+
+        <span class="n">project_name</span> <span class="o">=</span> <span class="n">name</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">name</span>
+
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Writer: Creating new project &#39;</span><span class="si">{</span><span class="n">project_name</span><span class="si">}</span><span class="s2">&#39; at </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+
+        <span class="c1"># Initialize project directory structure</span>
+        <span class="n">success</span> <span class="o">=</span> <span class="n">clone_writer_project</span><span class="p">(</span>
+            <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">git_strategy</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">branch</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span>
+        <span class="p">)</span>
+
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">success</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">error</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Writer: Failed to initialize project directory for </span><span class="si">{</span><span class="n">project_name</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+            <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Could not create project directory at </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+
+        <span class="c1"># Verify project directory was created</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">error</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Writer: Project directory </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="si">}</span><span class="s2"> was not created&quot;</span>
+            <span class="p">)</span>
+            <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Project directory </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="si">}</span><span class="s2"> was not created&quot;</span><span class="p">)</span>
+
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Writer: Successfully created project at </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span>
+
+    <span class="k">def</span><span class="w"> </span><span class="nf">_verify_project_structure</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Verify attached project has expected structure.</span>
+
+<span class="sd">        Checks:</span>
+<span class="sd">        - Required directories exist (01_manuscript, 02_supplementary, 03_revision)</span>
+
+<span class="sd">        Raises</span>
+<span class="sd">        ------</span>
+<span class="sd">        RuntimeError</span>
+<span class="sd">            If structure is invalid.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">required_dirs</span> <span class="o">=</span> <span class="p">[</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="s2">&quot;01_manuscript&quot;</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="s2">&quot;02_supplementary&quot;</span><span class="p">,</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="s2">&quot;03_revision&quot;</span><span class="p">,</span>
+        <span class="p">]</span>
+
+        <span class="k">for</span> <span class="n">dir_path</span> <span class="ow">in</span> <span class="n">required_dirs</span><span class="p">:</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="n">dir_path</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
+                <span class="n">logger</span><span class="o">.</span><span class="n">error</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Writer: Expected directory missing: </span><span class="si">{</span><span class="n">dir_path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+                <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span>
+                    <span class="sa">f</span><span class="s2">&quot;Project structure invalid: missing </span><span class="si">{</span><span class="n">dir_path</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2"> directory&quot;</span>
+                <span class="p">)</span>
+
+        <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;Writer: Project structure verified at </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+
+<div class="viewcode-block" id="Writer.compile_manuscript">
+<a class="viewcode-back" href="../../source/api/writer.html#scitex.writer.Writer.compile_manuscript">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">compile_manuscript</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">300</span><span class="p">,</span>
+        <span class="n">log_callback</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="nb">str</span><span class="p">],</span> <span class="kc">None</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">progress_callback</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">str</span><span class="p">],</span> <span class="kc">None</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">CompilationResult</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Compile manuscript to PDF with optional live callbacks.</span>
+
+<span class="sd">        Runs scripts/shell/compile_manuscript.sh with configured settings.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        timeout : int, optional</span>
+<span class="sd">            Maximum compilation time in seconds (default: 300).</span>
+<span class="sd">        log_callback : callable, optional</span>
+<span class="sd">            Called with each log line: log_callback(&quot;Running pdflatex...&quot;).</span>
+<span class="sd">        progress_callback : callable, optional</span>
+<span class="sd">            Called with progress: progress_callback(50, &quot;Pass 2/3&quot;).</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        CompilationResult</span>
+<span class="sd">            With success status, PDF path, and errors/warnings.</span>
+
+<span class="sd">        Examples</span>
+<span class="sd">        --------</span>
+<span class="sd">        &gt;&gt;&gt; writer = Writer(Path(&quot;my_paper&quot;))</span>
+<span class="sd">        &gt;&gt;&gt; result = writer.compile_manuscript()</span>
+<span class="sd">        &gt;&gt;&gt; if result.success:</span>
+<span class="sd">        ...     print(f&quot;PDF created: {result.output_pdf}&quot;)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="n">compile_manuscript</span><span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="n">timeout</span><span class="p">,</span>
+            <span class="n">log_callback</span><span class="o">=</span><span class="n">log_callback</span><span class="p">,</span>
+            <span class="n">progress_callback</span><span class="o">=</span><span class="n">progress_callback</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="Writer.compile_supplementary">
+<a class="viewcode-back" href="../../source/api/writer.html#scitex.writer.Writer.compile_supplementary">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">compile_supplementary</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">300</span><span class="p">,</span>
+        <span class="n">log_callback</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="nb">str</span><span class="p">],</span> <span class="kc">None</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">progress_callback</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">str</span><span class="p">],</span> <span class="kc">None</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">CompilationResult</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Compile supplementary materials to PDF with optional live callbacks.</span>
+
+<span class="sd">        Runs scripts/shell/compile_supplementary.sh with configured settings.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        timeout : int, optional</span>
+<span class="sd">            Maximum compilation time in seconds (default: 300).</span>
+<span class="sd">        log_callback : callable, optional</span>
+<span class="sd">            Called with each log line.</span>
+<span class="sd">        progress_callback : callable, optional</span>
+<span class="sd">            Called with progress updates.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        CompilationResult</span>
+<span class="sd">            With success status, PDF path, and errors/warnings.</span>
+
+<span class="sd">        Examples</span>
+<span class="sd">        --------</span>
+<span class="sd">        &gt;&gt;&gt; writer = Writer(Path(&quot;my_paper&quot;))</span>
+<span class="sd">        &gt;&gt;&gt; result = writer.compile_supplementary()</span>
+<span class="sd">        &gt;&gt;&gt; if result.success:</span>
+<span class="sd">        ...     print(f&quot;PDF created: {result.output_pdf}&quot;)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="n">compile_supplementary</span><span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="n">timeout</span><span class="p">,</span>
+            <span class="n">log_callback</span><span class="o">=</span><span class="n">log_callback</span><span class="p">,</span>
+            <span class="n">progress_callback</span><span class="o">=</span><span class="n">progress_callback</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="Writer.compile_revision">
+<a class="viewcode-back" href="../../source/api/writer.html#scitex.writer.Writer.compile_revision">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">compile_revision</span><span class="p">(</span>
+        <span class="bp">self</span><span class="p">,</span>
+        <span class="n">track_changes</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+        <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">300</span><span class="p">,</span>
+        <span class="n">log_callback</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="nb">str</span><span class="p">],</span> <span class="kc">None</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">progress_callback</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">[[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">str</span><span class="p">],</span> <span class="kc">None</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">CompilationResult</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Compile revision document with optional change tracking and live callbacks.</span>
+
+<span class="sd">        Runs scripts/shell/compile_revision.sh with configured settings.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        track_changes : bool, optional</span>
+<span class="sd">            Enable change tracking in compiled PDF (default: False).</span>
+<span class="sd">        timeout : int, optional</span>
+<span class="sd">            Maximum compilation time in seconds (default: 300).</span>
+<span class="sd">        log_callback : callable, optional</span>
+<span class="sd">            Called with each log line.</span>
+<span class="sd">        progress_callback : callable, optional</span>
+<span class="sd">            Called with progress updates.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        CompilationResult</span>
+<span class="sd">            With success status, PDF path, and errors/warnings.</span>
+
+<span class="sd">        Examples</span>
+<span class="sd">        --------</span>
+<span class="sd">        &gt;&gt;&gt; writer = Writer(Path(&quot;my_paper&quot;))</span>
+<span class="sd">        &gt;&gt;&gt; result = writer.compile_revision(track_changes=True)</span>
+<span class="sd">        &gt;&gt;&gt; if result.success:</span>
+<span class="sd">        ...     print(f&quot;Revision PDF: {result.output_pdf}&quot;)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="n">compile_revision</span><span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="p">,</span>
+            <span class="n">track_changes</span><span class="o">=</span><span class="n">track_changes</span><span class="p">,</span>
+            <span class="n">timeout</span><span class="o">=</span><span class="n">timeout</span><span class="p">,</span>
+            <span class="n">log_callback</span><span class="o">=</span><span class="n">log_callback</span><span class="p">,</span>
+            <span class="n">progress_callback</span><span class="o">=</span><span class="n">progress_callback</span><span class="p">,</span>
+        <span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="Writer.watch">
+<a class="viewcode-back" href="../../source/api/writer.html#scitex.writer.Writer.watch">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">watch</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">on_compile</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Callable</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Auto-recompile on file changes.&quot;&quot;&quot;</span>
+        <span class="n">watch_manuscript</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="p">,</span> <span class="n">on_compile</span><span class="o">=</span><span class="n">on_compile</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="Writer.get_pdf">
+<a class="viewcode-back" href="../../source/api/writer.html#scitex.writer.Writer.get_pdf">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">get_pdf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">doc_type</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;manuscript&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Path</span><span class="p">]:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get output PDF path (Read).&quot;&quot;&quot;</span>
+        <span class="n">pdf</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span> <span class="o">/</span> <span class="n">DOC_TYPE_DIRS</span><span class="p">[</span><span class="n">doc_type</span><span class="p">]</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">doc_type</span><span class="si">}</span><span class="s2">.pdf&quot;</span>
+        <span class="k">return</span> <span class="n">pdf</span> <span class="k">if</span> <span class="n">pdf</span><span class="o">.</span><span class="n">exists</span><span class="p">()</span> <span class="k">else</span> <span class="kc">None</span></div>
+
+
+<div class="viewcode-block" id="Writer.delete">
+<a class="viewcode-back" href="../../source/api/writer.html#scitex.writer.Writer.delete">[docs]</a>
+    <span class="k">def</span><span class="w"> </span><span class="nf">delete</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">bool</span><span class="p">:</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Delete project directory (Delete).&quot;&quot;&quot;</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Writer: Deleting project directory at </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+            <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="p">)</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Writer: Successfully deleted project at </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+            <span class="k">return</span> <span class="kc">True</span>
+        <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">error</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;Writer: Failed to delete project directory at </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">project_dir</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="p">)</span>
+            <span class="k">return</span> <span class="kc">False</span></div>
+</div>
+
+
+
+<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;Writer&quot;</span><span class="p">]</span>
+
+<span class="c1"># EOF</span>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_sources/api/index.rst.txt b/src/scitex/_sphinx_html/_sources/api/index.rst.txt
new file mode 100644
index 000000000..90a12130a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/index.rst.txt
@@ -0,0 +1,33 @@
+API Reference
+=============
+
+Auto-generated API documentation for all SciTeX modules.
+
+.. toctree::
+   :maxdepth: 1
+
+   scitex.session
+   scitex.io
+   scitex.config
+   scitex.logging
+   scitex.repro
+   scitex.clew
+   scitex.stats
+   scitex.plt
+   scitex.dsp
+   scitex.diagram
+   scitex.scholar
+   scitex.writer
+   scitex.linter
+   scitex.ai
+   scitex.nn
+   scitex.template
+   scitex.decorators
+   scitex.introspect
+   scitex.pd
+   scitex.gen
+   scitex.db
+   scitex.dict
+   scitex.str
+   scitex.path
+   scitex.social
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.ai.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.ai.rst.txt
new file mode 100644
index 000000000..51d7c6612
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.ai.rst.txt
@@ -0,0 +1,6 @@
+scitex.ai API Reference
+=======================
+
+.. automodule:: scitex.ai
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.clew.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.clew.rst.txt
new file mode 100644
index 000000000..ff3065d6e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.clew.rst.txt
@@ -0,0 +1,6 @@
+scitex.clew API Reference
+=========================
+
+.. automodule:: scitex.clew
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.config.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.config.rst.txt
new file mode 100644
index 000000000..4ae935a83
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.config.rst.txt
@@ -0,0 +1,6 @@
+scitex.config API Reference
+===========================
+
+.. automodule:: scitex.config
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.db.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.db.rst.txt
new file mode 100644
index 000000000..a4c64e9b9
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.db.rst.txt
@@ -0,0 +1,6 @@
+scitex.db API Reference
+=======================
+
+.. automodule:: scitex.db
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.decorators.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.decorators.rst.txt
new file mode 100644
index 000000000..548081db2
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.decorators.rst.txt
@@ -0,0 +1,6 @@
+scitex.decorators API Reference
+===============================
+
+.. automodule:: scitex.decorators
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.diagram.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.diagram.rst.txt
new file mode 100644
index 000000000..ad3798cfa
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.diagram.rst.txt
@@ -0,0 +1,6 @@
+scitex.diagram API Reference
+============================
+
+.. automodule:: scitex.diagram
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.dict.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.dict.rst.txt
new file mode 100644
index 000000000..b5da0fa0c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.dict.rst.txt
@@ -0,0 +1,6 @@
+scitex.dict API Reference
+=========================
+
+.. automodule:: scitex.dict
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.dsp.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.dsp.rst.txt
new file mode 100644
index 000000000..fdabef2c7
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.dsp.rst.txt
@@ -0,0 +1,6 @@
+scitex.dsp API Reference
+========================
+
+.. automodule:: scitex.dsp
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.gen.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.gen.rst.txt
new file mode 100644
index 000000000..571f50ac0
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.gen.rst.txt
@@ -0,0 +1,6 @@
+scitex.gen API Reference
+========================
+
+.. automodule:: scitex.gen
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.introspect.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.introspect.rst.txt
new file mode 100644
index 000000000..b71918efc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.introspect.rst.txt
@@ -0,0 +1,6 @@
+scitex.introspect API Reference
+===============================
+
+.. automodule:: scitex.introspect
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.io.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.io.rst.txt
new file mode 100644
index 000000000..a46a88560
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.io.rst.txt
@@ -0,0 +1,6 @@
+scitex.io API Reference
+=======================
+
+.. automodule:: scitex.io
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.linter.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.linter.rst.txt
new file mode 100644
index 000000000..bd8389f2c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.linter.rst.txt
@@ -0,0 +1,6 @@
+scitex.linter
+=============
+
+.. automodule:: scitex.linter
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.logging.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.logging.rst.txt
new file mode 100644
index 000000000..c8a959ecf
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.logging.rst.txt
@@ -0,0 +1,6 @@
+scitex.logging API Reference
+============================
+
+.. automodule:: scitex.logging
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.nn.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.nn.rst.txt
new file mode 100644
index 000000000..04e12a48d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.nn.rst.txt
@@ -0,0 +1,6 @@
+scitex.nn API Reference
+=======================
+
+.. automodule:: scitex.nn
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.path.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.path.rst.txt
new file mode 100644
index 000000000..e42beebb5
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.path.rst.txt
@@ -0,0 +1,6 @@
+scitex.path API Reference
+=========================
+
+.. automodule:: scitex.path
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.pd.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.pd.rst.txt
new file mode 100644
index 000000000..d8d37568e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.pd.rst.txt
@@ -0,0 +1,6 @@
+scitex.pd API Reference
+=======================
+
+.. automodule:: scitex.pd
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.plt.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.plt.rst.txt
new file mode 100644
index 000000000..61b6c8a21
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.plt.rst.txt
@@ -0,0 +1,12 @@
+scitex.plt API Reference
+========================
+
+.. note::
+
+   ``scitex.plt`` wraps matplotlib with data-tracking axes. The plotting API
+   is migrating to `figrecipe <https://github.com/ywatanabe1989/figrecipe>`_.
+   See :doc:`/modules/plt` for usage documentation.
+
+.. automodule:: scitex.plt
+   :members: subplots
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.repro.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.repro.rst.txt
new file mode 100644
index 000000000..e708e5279
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.repro.rst.txt
@@ -0,0 +1,6 @@
+scitex.repro API Reference
+==========================
+
+.. automodule:: scitex.repro
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.scholar.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.scholar.rst.txt
new file mode 100644
index 000000000..a31146632
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.scholar.rst.txt
@@ -0,0 +1,6 @@
+scitex.scholar API Reference
+============================
+
+.. automodule:: scitex.scholar
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.session.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.session.rst.txt
new file mode 100644
index 000000000..ababb2fdd
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.session.rst.txt
@@ -0,0 +1,8 @@
+scitex.session API Reference
+============================
+
+.. automodule:: scitex.session
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
+   :exclude-members: _InjectedSentinel
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.social.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.social.rst.txt
new file mode 100644
index 000000000..e6ba5dc39
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.social.rst.txt
@@ -0,0 +1,6 @@
+scitex.social API Reference
+===========================
+
+.. automodule:: scitex.social
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.stats.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.stats.rst.txt
new file mode 100644
index 000000000..c816a97be
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.stats.rst.txt
@@ -0,0 +1,6 @@
+scitex.stats API Reference
+==========================
+
+.. automodule:: scitex.stats
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.str.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.str.rst.txt
new file mode 100644
index 000000000..436f10973
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.str.rst.txt
@@ -0,0 +1,6 @@
+scitex.str API Reference
+========================
+
+.. automodule:: scitex.str
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.template.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.template.rst.txt
new file mode 100644
index 000000000..be04bf7e3
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.template.rst.txt
@@ -0,0 +1,6 @@
+scitex.template API Reference
+=============================
+
+.. automodule:: scitex.template
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/api/scitex.writer.rst.txt b/src/scitex/_sphinx_html/_sources/api/scitex.writer.rst.txt
new file mode 100644
index 000000000..d32944356
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/api/scitex.writer.rst.txt
@@ -0,0 +1,6 @@
+scitex.writer
+=============
+
+.. automodule:: scitex.writer
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/core_concepts.rst.txt b/src/scitex/_sphinx_html/_sources/core_concepts.rst.txt
new file mode 100644
index 000000000..4484557c4
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/core_concepts.rst.txt
@@ -0,0 +1,181 @@
+Core Concepts
+=============
+
+Research Workflow
+-----------------
+
+SciTeX covers the full research pipeline, from literature review to publication:
+
+.. image:: _static/workflow.png
+   :width: 100%
+   :alt: Research workflow: Question → Literature → Data → Analysis → Figures → Manuscript → Verify → Publication
+
+Each stage maps to a SciTeX module. The ``@stx.session`` decorator ties them
+together, ensuring every step is reproducible and provenance-tracked.
+
+Architecture
+------------
+
+SciTeX is organized around a simple principle: every research script should be
+a reproducible, self-documenting unit of work. The ``@stx.session`` decorator
+enforces this by managing outputs, logging, and configuration automatically.
+
+.. image:: _static/architecture.png
+   :width: 100%
+   :alt: Module architecture: Experiment (session, config, io, logging, repro), Analysis & Visualization (stats, dsp, plt, diagram), Publication (scholar, writer, clew)
+
+Modules are grouped into three layers -- **Experiment** infrastructure (blue),
+**Analysis & Visualization** tools (orange), and **Publication** (purple).
+See :doc:`modules/index` for the full module reference.
+
+The Session Model
+-----------------
+
+``@stx.session`` is the core abstraction. It wraps a function and provides:
+
+1. **Output directory**: ``script_out/FINISHED_SUCCESS/<session_id>/``
+2. **Logging**: All stdout/stderr captured to ``script.log``
+3. **Config injection**: YAML files from ``./config/`` merged and injected
+4. **CLI generation**: Function parameters become ``--flags``
+5. **Provenance**: File hashes recorded to SQLite for reproducibility
+
+.. code-block:: python
+
+    import scitex as stx
+
+    @stx.session
+    def main(
+        lr=0.001,               # --lr 0.01
+        epochs=100,             # --epochs 50
+        CONFIG=stx.INJECTED,    # from ./config/*.yaml
+        plt=stx.INJECTED,       # pre-configured matplotlib
+        logger=stx.INJECTED,    # session logger
+    ):
+        """Train a model. Docstring becomes --help text."""
+        logger.info(f"Training with lr={lr}, epochs={epochs}")
+
+        # stx.io.save paths are relative to session output dir
+        stx.io.save({"lr": lr, "epochs": epochs}, "params.yaml")
+
+        return 0
+
+Session output tree:
+
+.. code-block:: text
+
+    train_out/
+    ├── RUNNING/                    # while script runs
+    │   └── 20260213_143022_AB12/
+    │       ├── params.yaml
+    │       └── train.log
+    └── FINISHED_SUCCESS/           # after successful exit
+        └── 20260213_143022_AB12/   # moved here on completion
+            ├── params.yaml
+            └── train.log
+
+Universal I/O
+-------------
+
+``stx.io.save`` and ``stx.io.load`` dispatch on file extension:
+
+.. list-table::
+   :header-rows: 1
+
+   * - Extension
+     - Data Type
+     - Backend
+   * - ``.csv``
+     - DataFrame
+     - pandas
+   * - ``.npy``, ``.npz``
+     - ndarray
+     - numpy
+   * - ``.pkl``, ``.pickle``
+     - any object
+     - pickle
+   * - ``.yaml``, ``.yml``
+     - dict
+     - PyYAML
+   * - ``.json``
+     - dict/list
+     - json
+   * - ``.png``, ``.jpg``, ``.svg``, ``.pdf``
+     - Figure
+     - matplotlib
+   * - ``.hdf5``, ``.h5``
+     - dict/array
+     - h5py
+   * - ``.mat``
+     - dict
+     - scipy.io
+   * - ``.pth``, ``.pt``
+     - state_dict
+     - torch
+   * - ``.parquet``
+     - DataFrame
+     - pyarrow
+
+When saving a matplotlib Figure, SciTeX also exports:
+
+- A ``.csv`` with the plotted data (extracted from axes)
+- A ``.yaml`` recipe for reproducing the figure
+
+Provenance Tracking (Clew)
+--------------------------
+
+Inside ``@stx.session``, every ``stx.io.save`` and ``stx.io.load`` call
+records the file's SHA-256 hash to a local SQLite database. This enables:
+
+- **Verification**: Check if output files have been modified since creation
+- **DAG reconstruction**: Trace which inputs produced which outputs
+- **Cross-session linking**: If script B loads a file that script A produced,
+  the parent-child relationship is recorded automatically
+
+.. code-block:: bash
+
+    # Check verification status
+    scitex clew status
+
+    # Verify a specific session
+    scitex clew run <session_id>
+
+    # Generate a dependency diagram
+    scitex clew mermaid
+
+Configuration
+-------------
+
+SciTeX uses a priority-based config system:
+
+1. **CLI flags** (highest priority): ``--lr 0.01``
+2. **Config files**: ``./config/*.yaml`` (merged alphabetically)
+3. **Function defaults** (lowest priority): ``lr=0.001``
+
+.. code-block:: yaml
+
+    # config/experiment.yaml
+    DATA_DIR: ./data
+    MODEL:
+      hidden_size: 256
+      dropout: 0.1
+
+    # config/PATH.yaml
+    OUTPUT_DIR: ${HOME}/results    # env var substitution
+
+Access in code:
+
+.. code-block:: python
+
+    @stx.session
+    def main(CONFIG=stx.INJECTED, **kw):
+        data_dir = CONFIG["DATA_DIR"]
+        hidden = CONFIG["MODEL"]["hidden_size"]
+
+Best Practices
+--------------
+
+1. **One session per script**: Each ``.py`` file should have one ``@stx.session`` function
+2. **Use relative paths in save/load**: They resolve relative to the session output directory
+3. **Return 0 for success**: The exit code determines the output directory name (``FINISHED_SUCCESS`` vs ``FINISHED_ERROR``)
+4. **Put config in** ``./config/*.yaml``: Keeps parameters separate from code
+5. **Use** ``stx.repro.fix_seeds(42)`` **for determinism**: Fixes numpy, torch, random seeds in one call
diff --git a/src/scitex/_sphinx_html/_sources/gallery.rst.txt b/src/scitex/_sphinx_html/_sources/gallery.rst.txt
new file mode 100644
index 000000000..9afe7c776
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/gallery.rst.txt
@@ -0,0 +1,206 @@
+Plot Gallery
+============
+
+``stx.plt`` wraps matplotlib axes with data-tracking methods.
+All ``plot_*`` methods record data for automatic CSV export.
+
+Generate the full gallery locally:
+
+.. code-block:: python
+
+   import scitex as stx
+   stx.plt.gallery.generate(output_dir="./gallery")
+
+Line Plots
+----------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/line/stx_line.png
+          :width: 100%
+
+          ``ax.plot_line(x, y)``
+
+     - .. figure:: _static/gallery/line/stx_shaded_line.png
+          :width: 100%
+
+          ``ax.plot_shaded_line(x, y_mean, y_std)``
+
+   * - .. figure:: _static/gallery/line/plot.png
+          :width: 100%
+
+          ``ax.plot(x, y)`` (standard matplotlib)
+
+     - .. figure:: _static/gallery/line/step.png
+          :width: 100%
+
+          ``ax.step(x, y)``
+
+Statistical Plots
+-----------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/statistical/stx_mean_std.png
+          :width: 100%
+
+          ``ax.plot_mean_std(groups)``
+
+     - .. figure:: _static/gallery/statistical/stx_mean_ci.png
+          :width: 100%
+
+          ``ax.plot_mean_ci(groups)``
+
+   * - .. figure:: _static/gallery/statistical/stx_median_iqr.png
+          :width: 100%
+
+          ``ax.plot_median_iqr(groups)``
+
+     - .. figure:: _static/gallery/statistical/stx_errorbar.png
+          :width: 100%
+
+          ``ax.plot_errorbar(x, y, yerr)``
+
+Distribution Plots
+------------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/distribution/stx_kde.png
+          :width: 100%
+
+          ``ax.plot_kde(data)``
+
+     - .. figure:: _static/gallery/distribution/stx_ecdf.png
+          :width: 100%
+
+          ``ax.plot_ecdf(data)``
+
+   * - .. figure:: _static/gallery/distribution/stx_joyplot.png
+          :width: 100%
+
+          ``ax.plot_joyplot(groups)``
+
+     - .. figure:: _static/gallery/distribution/hist.png
+          :width: 100%
+
+          ``ax.hist(data)``
+
+Categorical Plots
+-----------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/categorical/stx_violin.png
+          :width: 100%
+
+          ``ax.plot_violin(groups)``
+
+     - .. figure:: _static/gallery/categorical/stx_box.png
+          :width: 100%
+
+          ``ax.plot_box(groups)``
+
+   * - .. figure:: _static/gallery/categorical/stx_bar.png
+          :width: 100%
+
+          ``ax.plot_bar(labels, values)``
+
+     - .. figure:: _static/gallery/categorical/stx_barh.png
+          :width: 100%
+
+          ``ax.plot_barh(labels, values)``
+
+Scatter Plots
+-------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/scatter/stx_scatter.png
+          :width: 100%
+
+          ``ax.plot_scatter(x, y)``
+
+     - .. figure:: _static/gallery/scatter/scatter.png
+          :width: 100%
+
+          ``ax.scatter(x, y)`` (standard matplotlib)
+
+Heatmaps and Grids
+-------------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/grid/stx_heatmap.png
+          :width: 100%
+
+          ``ax.plot_heatmap(matrix)``
+
+     - .. figure:: _static/gallery/grid/stx_conf_mat.png
+          :width: 100%
+
+          ``ax.plot_conf_mat(cm)``
+
+   * - .. figure:: _static/gallery/grid/stx_image.png
+          :width: 100%
+
+          ``ax.plot_image(img)``
+
+     - .. figure:: _static/gallery/grid/stx_imshow.png
+          :width: 100%
+
+          ``ax.plot_imshow(data)``
+
+Area Plots
+----------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/area/stx_fill_between.png
+          :width: 100%
+
+          ``ax.plot_fill_between(x, y1, y2)``
+
+     - .. figure:: _static/gallery/area/stx_fillv.png
+          :width: 100%
+
+          ``ax.plot_fillv(x_start, x_end)``
+
+Special Plots
+-------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/special/stx_raster.png
+          :width: 100%
+
+          ``ax.plot_raster(spike_times)``
+
+     - .. figure:: _static/gallery/special/stx_rectangle.png
+          :width: 100%
+
+          ``ax.plot_rectangle(xy, w, h)``
+
+Contour and Vector Plots
+-------------------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/contour/stx_contour.png
+          :width: 100%
+
+          ``ax.plot_contour(x, y, z)``
+
+     - .. figure:: _static/gallery/vector/quiver.png
+          :width: 100%
+
+          ``ax.quiver(x, y, u, v)``
diff --git a/src/scitex/_sphinx_html/_sources/index.rst.txt b/src/scitex/_sphinx_html/_sources/index.rst.txt
new file mode 100644
index 000000000..e8dcdd7b0
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/index.rst.txt
@@ -0,0 +1,78 @@
+.. SciTeX documentation master file
+
+SciTeX -- Modular Python Toolkit for Researchers and AI Agents
+=============================================================
+
+A Python framework for reproducible scientific research.
+
+.. image:: _static/workflow.png
+   :alt: SciTeX Ecosystem
+   :align: center
+   :width: 800px
+
+Role in SciTeX Ecosystem
+------------------------
+
+``scitex`` is the **unified orchestrator** package. It re-exports from sub-packages
+so users have a single import (``import scitex``). It does not contain runtime logic
+itself -- it delegates to sub-packages.
+
+.. code-block:: text
+
+   scitex (this package) -- orchestrator, templates, CLI, MCP server
+     |-- scitex.app  <-  scitex-app   (runtime SDK: file I/O, config, validation)
+     |-- scitex.ui   <-  scitex-ui    (React/TS components: workspace, data-table)
+     +-- scitex.plt  <-  figrecipe    (figures: plotting, diagrams, recipes)
+
+- **scitex-app** (`docs <https://scitex-app.readthedocs.io/>`_): Runtime SDK that apps import at execution time
+- **scitex-ui** (`docs <https://scitex-ui.readthedocs.io/>`_): Shared React/TypeScript component library
+- **figrecipe** (`docs <https://figrecipe.readthedocs.io/>`_): Reference app -- figures, diagrams, recipes
+
+Four Freedoms for Research
+--------------------------
+
+0. The freedom to **run** your research anywhere -- your machine, your terms.
+1. The freedom to **study** how every step works -- from raw data to final manuscript.
+2. The freedom to **redistribute** your workflows, not just your papers.
+3. The freedom to **modify** any module and share improvements with the community.
+
+AGPL-3.0 -- because research infrastructure deserves the same freedoms as the software it runs on.
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(n_samples=100, plt=stx.INJECTED):
+       import numpy as np
+       x = np.linspace(0, 2 * np.pi, n_samples)
+       y = np.sin(x) + np.random.normal(0, 0.1, n_samples)
+
+       fig, ax = plt.subplots()
+       ax.plot_line(x, y)
+       stx.io.save(fig, "sine.png")       # PNG + CSV + YAML recipe
+       return 0
+
+- ``@stx.session`` -- Reproducible runs with CLI, config, and provenance tracking
+- ``stx.io`` -- Save/load 30+ formats through a single interface
+- ``stx.plt`` -- Publication figures with auto CSV data export
+- ``stx.stats`` -- 23 statistical tests with effect sizes and CI
+- ``stx.scholar`` -- Search, download, and enrich papers
+- 120+ MCP tools for AI-assisted research workflows
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Getting Started
+
+   modules/index
+   installation
+   quickstart
+   core_concepts
+   gallery
+
+.. toctree::
+   :maxdepth: 1
+   :caption: API Reference
+   :hidden:
+
+   api/index
diff --git a/src/scitex/_sphinx_html/_sources/installation.rst.txt b/src/scitex/_sphinx_html/_sources/installation.rst.txt
new file mode 100644
index 000000000..5b692ce9f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/installation.rst.txt
@@ -0,0 +1,166 @@
+Installation
+============
+
+Requirements
+------------
+
+- **Python 3.10+**
+- ``uv`` (strongly recommended) — install with ``pip install uv`` or
+  ``curl -LsSf https://astral.sh/uv/install.sh | sh``
+- ``pip`` 21+ also works, but expect 30–90 min for ``scitex[all]``
+  (see warning below)
+
+
+.. warning::
+
+   ``pip install "scitex[all]"`` typically takes **30–90 minutes** because
+   pip's serial resolver walks version histories of the large transitive
+   dependency set (numpy/pandas/torch/jax/playwright/openalex-local/…).
+   Use **uv** instead — it resolves the same set in parallel in **1–3
+   minutes**. Every ``pip install`` line on this page also works as
+   ``uv pip install`` and we recommend the uv form.
+
+
+Core Install
+------------
+
+The base package pulls in only lightweight dependencies and gives you access
+to session management, path utilities, string helpers, and the module
+discovery system.
+
+.. code-block:: bash
+
+   uv pip install scitex          # recommended
+   pip install scitex              # also works, slower for [all]
+
+
+Recommended: Install Everything
+-------------------------------
+
+If you want the full experience (plotting, statistics, I/O, scholar, writer,
+and every other module):
+
+.. code-block:: bash
+
+   uv pip install "scitex[all]"   # ~3 min
+   pip install "scitex[all]"       # ~30–90 min (resolver thrash)
+
+
+Research Workflow
+-----------------
+
+For a typical research project you need figures, statistics, and literature
+search but not audio, browser automation, or cloud tools:
+
+.. code-block:: bash
+
+   pip install "scitex[plt,stats,scholar]"
+
+
+Per-Module Extras
+-----------------
+
+Install only what you need. Each extra maps to a self-contained capability.
+
+.. list-table::
+   :header-rows: 1
+   :widths: 15 55
+
+   * - Extra
+     - Description
+   * - ``plt``
+     - Publication-ready figures via figrecipe (matplotlib, seaborn, Pillow)
+   * - ``stats``
+     - Hypothesis testing, effect sizes, power analysis (scitex-stats, scipy, statsmodels)
+   * - ``io``
+     - Unified I/O for 40+ formats (HDF5, Excel, YAML, PDF, images, ...)
+   * - ``scholar``
+     - Literature search and PDF management (CrossRef, OpenAlex, Semantic Scholar)
+   * - ``writer``
+     - LaTeX manuscript compilation, BibTeX management, Overleaf export
+   * - ``audio``
+     - Text-to-speech and audio utilities (scitex-audio)
+   * - ``ai``
+     - LLM APIs (OpenAI, Anthropic, Google, Groq) and ML tools (scikit-learn)
+   * - ``browser``
+     - Web automation via Playwright
+   * - ``capture``
+     - Screenshot capture (mss, Playwright)
+   * - ``dataset``
+     - Scientific dataset access (DANDI, OpenNeuro, PhysioNet)
+   * - ``cloud``
+     - Cloud integration utilities
+   * - ``app``
+     - Unified file storage SDK (scitex-app)
+   * - ``session``
+     - Session decorator with reproducibility logging
+   * - ``diagram``
+     - Diagram generation (Mermaid, Graphviz)
+   * - ``db``
+     - Database access (SQLAlchemy, PostgreSQL)
+   * - ``cv``
+     - Computer vision (OpenCV, Pillow)
+   * - ``dsp``
+     - Digital signal processing (scipy, tensorpac)
+   * - ``social``
+     - Social media posting (socialia)
+   * - ``tunnel``
+     - SSH tunnel management (scitex-tunnel)
+   * - ``all``
+     - Everything above
+
+
+Example combinations:
+
+.. code-block:: bash
+
+   # Neuroscience analysis
+   pip install "scitex[plt,stats,dsp,dataset]"
+
+   # Paper writing
+   pip install "scitex[writer,scholar,plt]"
+
+   # AI agent development
+   pip install "scitex[ai,browser,capture]"
+
+
+Development Install
+-------------------
+
+Clone the repository and install in editable mode with development tools:
+
+.. code-block:: bash
+
+   git clone https://github.com/ywatanabe1989/scitex-python.git
+   cd scitex-python
+   pip install -e ".[dev]"
+
+The ``dev`` extra includes pytest, ruff, mypy, Sphinx, and build tools.
+
+Using uv (recommended)
+^^^^^^^^^^^^^^^^^^^^^^^
+
+`uv <https://docs.astral.sh/uv/>`_ resolves and installs dependencies
+in parallel from a Rust resolver — roughly 10–30× faster than pip on
+``scitex[all]`` (3 min vs. 30–90 min). Install it once with
+``pip install uv`` (or the standalone shell installer), then prefix
+every install command on this page with ``uv``:
+
+.. code-block:: bash
+
+   uv pip install -e ".[dev]"
+
+
+Verifying the Installation
+--------------------------
+
+.. code-block:: python
+
+   import scitex as stx
+   print(stx.__version__)
+
+To check which optional modules are available:
+
+.. code-block:: python
+
+   stx.usage.list()
diff --git a/src/scitex/_sphinx_html/_sources/modules/ai.rst.txt b/src/scitex/_sphinx_html/_sources/modules/ai.rst.txt
new file mode 100644
index 000000000..b1f49f0c2
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/ai.rst.txt
@@ -0,0 +1,81 @@
+AI Module (``stx.ai``)
+======================
+
+Machine learning utilities for training, classification, and metrics
+with PyTorch and scikit-learn.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Training utilities
+   from scitex.ai import LearningCurveLogger, EarlyStopping
+
+   logger = LearningCurveLogger()
+   stopper = EarlyStopping(patience=10, direction="minimize")
+
+   for epoch in range(100):
+       # ... training loop ...
+       logger({"loss": loss, "acc": acc}, step="Training")
+       if stopper(val_loss, {"model": model_path}, epoch):
+           break
+
+   logger.plot_learning_curves(spath="curves.png")
+
+   # Classification
+   from scitex.ai import ClassificationReporter, Classifier
+
+   clf = Classifier()("SVC")
+   reporter = ClassificationReporter(output_dir="./results")
+   reporter.calculate_metrics(y_true, y_pred, y_proba)
+   reporter.save_summary()
+
+Training
+--------
+
+- ``LearningCurveLogger`` -- Track and visualize training/validation/test metrics across epochs
+- ``EarlyStopping`` -- Monitor validation metrics and stop when improvement plateaus
+
+Classification
+--------------
+
+- ``ClassificationReporter`` -- Unified reporter for single/multi-task classification (balanced accuracy, MCC, ROC-AUC, confusion matrices)
+- ``Classifier`` -- Factory for scikit-learn classifiers (SVC, KNN, Logistic Regression, AdaBoost, ...)
+- ``CrossValidationExperiment`` -- Cross-validation framework
+
+Metrics
+-------
+
+Standardized ``calc_*`` functions:
+
+- ``calc_bacc`` -- Balanced accuracy
+- ``calc_mcc`` -- Matthews Correlation Coefficient
+- ``calc_conf_mat`` -- Confusion matrix
+- ``calc_roc_auc`` -- ROC-AUC score
+- ``calc_pre_rec_auc`` -- Precision-Recall AUC
+- ``calc_feature_importance`` -- Feature importance scores
+
+Visualization
+-------------
+
+- ``plot_learning_curve`` -- Training/validation curves
+- ``stx_conf_mat`` -- Confusion matrix heatmap
+- ``plot_roc_curve`` -- ROC curve
+- ``plot_pre_rec_curve`` -- Precision-Recall curve
+- ``plot_feature_importance`` -- Feature importance bar plots
+
+Other
+-----
+
+- ``MultiTaskLoss`` -- Multi-task learning loss weighting
+- ``get_optimizer`` / ``set_optimizer`` -- Optimizer management
+- ``GenAI`` -- Generative AI wrapper (lazy-loaded)
+- Clustering: ``pca``, ``umap``
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.ai` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/app.rst.txt b/src/scitex/_sphinx_html/_sources/modules/app.rst.txt
new file mode 100644
index 000000000..4b03e4a06
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/app.rst.txt
@@ -0,0 +1,4 @@
+app Module (``stx.app``)
+========================
+
+See :doc:`/api/scitex.app` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/audio.rst.txt b/src/scitex/_sphinx_html/_sources/modules/audio.rst.txt
new file mode 100644
index 000000000..eaf9823f8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/audio.rst.txt
@@ -0,0 +1,4 @@
+audio Module (``stx.audio``)
+============================
+
+See :doc:`/api/scitex.audio` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/audit.rst.txt b/src/scitex/_sphinx_html/_sources/modules/audit.rst.txt
new file mode 100644
index 000000000..ca8e0bcdc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/audit.rst.txt
@@ -0,0 +1,4 @@
+audit Module (``stx.audit``)
+============================
+
+See :doc:`/api/scitex.audit` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/benchmark.rst.txt b/src/scitex/_sphinx_html/_sources/modules/benchmark.rst.txt
new file mode 100644
index 000000000..10c989b1e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/benchmark.rst.txt
@@ -0,0 +1,4 @@
+benchmark Module (``stx.benchmark``)
+====================================
+
+See :doc:`/api/scitex.benchmark` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/bridge.rst.txt b/src/scitex/_sphinx_html/_sources/modules/bridge.rst.txt
new file mode 100644
index 000000000..12fe2d373
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/bridge.rst.txt
@@ -0,0 +1,4 @@
+bridge Module (``stx.bridge``)
+==============================
+
+See :doc:`/api/scitex.bridge` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/browser.rst.txt b/src/scitex/_sphinx_html/_sources/modules/browser.rst.txt
new file mode 100644
index 000000000..d8ab6222e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/browser.rst.txt
@@ -0,0 +1,4 @@
+browser Module (``stx.browser``)
+================================
+
+See :doc:`/api/scitex.browser` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/canvas.rst.txt b/src/scitex/_sphinx_html/_sources/modules/canvas.rst.txt
new file mode 100644
index 000000000..bd92b96bc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/canvas.rst.txt
@@ -0,0 +1,4 @@
+canvas Module (``stx.canvas``)
+==============================
+
+See :doc:`/api/scitex.canvas` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/capture.rst.txt b/src/scitex/_sphinx_html/_sources/modules/capture.rst.txt
new file mode 100644
index 000000000..ced769f55
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/capture.rst.txt
@@ -0,0 +1,4 @@
+capture Module (``stx.capture``)
+================================
+
+See :doc:`/api/scitex.capture` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/clew.rst.txt b/src/scitex/_sphinx_html/_sources/modules/clew.rst.txt
new file mode 100644
index 000000000..8dbe05f85
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/clew.rst.txt
@@ -0,0 +1,93 @@
+Clew Module (``stx.clew``)
+==========================
+
+Hash-based provenance tracking for reproducible science. Clew (Ariadne's
+thread) records file hashes during ``@stx.session`` runs and traces
+dependency chains back to source.
+
+How It Works
+------------
+
+1. ``@stx.session`` starts a tracking session
+2. ``stx.io.load()`` records input file hashes
+3. ``stx.io.save()`` records output file hashes
+4. Session close computes a combined hash of all inputs/outputs
+5. Later, ``stx.clew`` can verify nothing has changed
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Automatic -- just use @stx.session + stx.io
+   @stx.session
+   def main():
+       data = stx.io.load("input.csv")      # Tracked as input
+       result = process(data)
+       stx.io.save(result, "output.png")     # Tracked as output
+       return 0
+
+   # Verify later
+   stx.clew.status()                         # Like git status
+   stx.clew.run("session_id")                # Verify by hash
+   stx.clew.chain("output.png")              # Trace to source
+
+CLI Commands
+------------
+
+.. code-block:: bash
+
+   scitex clew status                  # Show changed files
+   scitex clew list                    # List all tracked runs
+   scitex clew run <session_id>        # Verify a specific run
+   scitex clew chain <file>            # Trace dependency chain
+   scitex clew stats                   # Database statistics
+
+Verification Levels
+-------------------
+
+- **CACHE** -- Hash comparison only (fast). Checks if files match stored hashes.
+- **RERUN** -- Re-execute scripts and compare outputs (thorough). Catches logic errors.
+
+.. code-block:: python
+
+   # Fast: hash comparison
+   result = stx.clew.run("session_id")
+
+   # Thorough: re-execute and compare
+   result = stx.clew.run("session_id", from_scratch=True)
+
+Dependency Chains
+-----------------
+
+Clew traces ``parent_session`` links to build a DAG from final output
+back to original source:
+
+.. code-block:: python
+
+   chain = stx.clew.chain("final_figure.png")
+   # Shows: source.py → intermediate.csv → analysis.py → final_figure.png
+
+   # Visualize as Mermaid DAG
+   stx.clew.mermaid("session_id")
+
+Verification Statuses
+---------------------
+
+- ``VERIFIED`` -- Files match expected hashes
+- ``MISMATCH`` -- Files differ from stored hashes
+- ``MISSING`` -- Files no longer exist
+- ``UNKNOWN`` -- No prior tracking data
+
+Key Functions
+-------------
+
+- ``status()`` -- Show changed items (like ``git status``)
+- ``run(session_id)`` -- Verify a specific run
+- ``chain(target_file)`` -- Trace dependency chain
+- ``list_runs(limit, status)`` -- List tracked runs
+- ``stats()`` -- Database statistics
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.clew` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/cli.rst.txt b/src/scitex/_sphinx_html/_sources/modules/cli.rst.txt
new file mode 100644
index 000000000..c785b8f32
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/cli.rst.txt
@@ -0,0 +1,4 @@
+cli Module (``stx.cli``)
+========================
+
+See :doc:`/api/scitex.cli` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/cloud.rst.txt b/src/scitex/_sphinx_html/_sources/modules/cloud.rst.txt
new file mode 100644
index 000000000..f6b08e85f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/cloud.rst.txt
@@ -0,0 +1,4 @@
+cloud Module (``stx.cloud``)
+============================
+
+See :doc:`/api/scitex.cloud` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/compat.rst.txt b/src/scitex/_sphinx_html/_sources/modules/compat.rst.txt
new file mode 100644
index 000000000..7977c33bc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/compat.rst.txt
@@ -0,0 +1,4 @@
+compat Module (``stx.compat``)
+==============================
+
+See :doc:`/api/scitex.compat` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/config.rst.txt b/src/scitex/_sphinx_html/_sources/modules/config.rst.txt
new file mode 100644
index 000000000..dbdcb26ac
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/config.rst.txt
@@ -0,0 +1,87 @@
+Config Module (``stx.config``)
+===============================
+
+YAML-based configuration with priority resolution and path management.
+
+Priority Resolution
+-------------------
+
+All config values follow the same precedence:
+
+.. code-block:: text
+
+   direct argument > config/YAML > environment variable > default
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Get global config (reads ~/.scitex/config.yaml)
+   config = stx.config.get_config()
+
+   # Resolve with precedence
+   log_level = config.resolve("logging.level", default="INFO")
+   # Checks: direct → YAML → SCITEX_LOGGING_LEVEL env → "INFO"
+
+   # Access nested values
+   config.get_nested("scholar", "crossref_email")
+
+   # Path management
+   paths = stx.config.get_paths()
+   paths.scholar        # ~/.scitex/scholar
+   paths.cache          # ~/.scitex/cache
+
+YAML Configuration
+------------------
+
+.. code-block:: yaml
+
+   # ~/.scitex/config.yaml (or ./config/*.yaml for projects)
+   logging:
+     level: INFO
+
+   scholar:
+     crossref_email: ${CROSSREF_EMAIL:-user@example.com}
+
+Environment variable substitution with ``${VAR:-default}`` syntax is
+supported in YAML files.
+
+Key Classes
+-----------
+
+- ``ScitexConfig`` -- YAML-based config with env var substitution and precedence resolution
+- ``PriorityConfig`` -- Dict-based config resolver for programmatic use
+- ``ScitexPaths`` -- Centralized path manager (all paths derive from ``~/.scitex/``)
+- ``EnvVar`` -- Environment variable definition dataclass
+
+Path Management
+---------------
+
+``ScitexPaths`` manages all SciTeX directories:
+
+.. code-block:: python
+
+   paths = stx.config.get_paths()
+   paths.base       # ~/.scitex (SCITEX_DIR)
+   paths.logs       # ~/.scitex/logs
+   paths.cache      # ~/.scitex/cache
+   paths.scholar    # ~/.scitex/scholar
+   paths.rng        # ~/.scitex/rng
+   paths.capture    # ~/.scitex/capture
+
+Utility Functions
+-----------------
+
+- ``get_config(path)`` -- Get singleton ScitexConfig instance
+- ``get_paths(base_dir)`` -- Get singleton ScitexPaths instance
+- ``load_yaml(path)`` -- Load YAML with env var substitution
+- ``load_dotenv(path)`` -- Load ``.env`` file
+- ``get_scitex_dir()`` -- Get SCITEX_DIR with precedence
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.config` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/container.rst.txt b/src/scitex/_sphinx_html/_sources/modules/container.rst.txt
new file mode 100644
index 000000000..60631f757
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/container.rst.txt
@@ -0,0 +1,4 @@
+container Module (``stx.container``)
+====================================
+
+See :doc:`/api/scitex.container` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/context.rst.txt b/src/scitex/_sphinx_html/_sources/modules/context.rst.txt
new file mode 100644
index 000000000..fe6009e47
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/context.rst.txt
@@ -0,0 +1,4 @@
+context Module (``stx.context``)
+================================
+
+See :doc:`/api/scitex.context` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/cv.rst.txt b/src/scitex/_sphinx_html/_sources/modules/cv.rst.txt
new file mode 100644
index 000000000..3de4145dd
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/cv.rst.txt
@@ -0,0 +1,4 @@
+cv Module (``stx.cv``)
+======================
+
+See :doc:`/api/scitex.cv` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/dataset.rst.txt b/src/scitex/_sphinx_html/_sources/modules/dataset.rst.txt
new file mode 100644
index 000000000..35b8c8c4c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/dataset.rst.txt
@@ -0,0 +1,4 @@
+dataset Module (``stx.dataset``)
+================================
+
+See :doc:`/api/scitex.dataset` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/datetime.rst.txt b/src/scitex/_sphinx_html/_sources/modules/datetime.rst.txt
new file mode 100644
index 000000000..915d124e1
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/datetime.rst.txt
@@ -0,0 +1,4 @@
+datetime Module (``stx.datetime``)
+==================================
+
+See :doc:`/api/scitex.datetime` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/db.rst.txt b/src/scitex/_sphinx_html/_sources/modules/db.rst.txt
new file mode 100644
index 000000000..c961228cb
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/db.rst.txt
@@ -0,0 +1,4 @@
+db Module (``stx.db``)
+======================
+
+See :doc:`/api/scitex.db` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/decorators.rst.txt b/src/scitex/_sphinx_html/_sources/modules/decorators.rst.txt
new file mode 100644
index 000000000..960b6ad6d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/decorators.rst.txt
@@ -0,0 +1,79 @@
+Decorators Module (``stx.decorators``)
+=======================================
+
+Function decorators for type conversion, batching, caching, and more.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   from scitex.decorators import torch_fn, batch_fn, cache_disk, timeout
+
+   @torch_fn
+   def process(x):
+       """Auto-converts inputs to torch tensors, outputs back."""
+       return x * 2
+
+   @batch_fn
+   def predict(data, batch_size=32):
+       """Process data in batches with progress bar."""
+       return model(data)
+
+   @cache_disk
+   def expensive_computation(params):
+       """Results cached to disk for reuse."""
+       return heavy_compute(params)
+
+   @timeout(seconds=30)
+   def risky_call():
+       """Raises TimeoutError if exceeds 30s."""
+       return external_api()
+
+Type Conversion
+---------------
+
+Auto-convert between data frameworks:
+
+- ``@torch_fn`` -- Inputs to PyTorch tensors, outputs back to original type
+- ``@numpy_fn`` -- Inputs to NumPy arrays
+- ``@pandas_fn`` -- Inputs to pandas objects
+- ``@xarray_fn`` -- Inputs to xarray objects
+
+Batch Processing
+----------------
+
+- ``@batch_fn`` -- Split input into batches with tqdm progress
+- ``@batch_numpy_fn`` -- NumPy conversion + batching
+- ``@batch_torch_fn`` -- PyTorch conversion + batching
+- ``@batch_pandas_fn`` -- Pandas conversion + batching
+
+Caching
+-------
+
+- ``@cache_mem`` -- In-memory function result caching
+- ``@cache_disk`` -- Persistent disk-based caching
+- ``@cache_disk_async`` -- Async disk caching
+
+Utilities
+---------
+
+- ``@deprecated(reason, forward_to)`` -- Mark functions as deprecated
+- ``@not_implemented`` -- Mark as not yet implemented
+- ``@timeout(seconds)`` -- Enforce execution time limits
+- ``@preserve_doc`` -- Preserve docstrings when wrapping
+
+Auto-Ordering
+-------------
+
+.. code-block:: python
+
+   from scitex.decorators import enable_auto_order
+
+   enable_auto_order()
+   # Now decorators are applied in optimal order regardless of code order
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.decorators` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/dev.rst.txt b/src/scitex/_sphinx_html/_sources/modules/dev.rst.txt
new file mode 100644
index 000000000..14ab092d1
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/dev.rst.txt
@@ -0,0 +1,4 @@
+dev Module (``stx.dev``)
+========================
+
+See :doc:`/api/scitex.dev` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/diagram.rst.txt b/src/scitex/_sphinx_html/_sources/modules/diagram.rst.txt
new file mode 100644
index 000000000..b1d05f528
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/diagram.rst.txt
@@ -0,0 +1,98 @@
+Diagram Module (``stx.diagram``)
+=================================
+
+Paper-optimized diagram generation with Mermaid and Graphviz backends.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   from scitex.diagram import Diagram
+
+   # Create from Python
+   d = Diagram(type="workflow", title="Analysis Pipeline")
+   d.add_node("load", "Load Data", shape="stadium")
+   d.add_node("proc", "Process", shape="rounded", emphasis="primary")
+   d.add_node("save", "Save Results", shape="stadium", emphasis="success")
+   d.add_edge("load", "proc")
+   d.add_edge("proc", "save")
+
+   # Export
+   d.to_mermaid("pipeline.mmd")
+   d.to_graphviz("pipeline.dot")
+
+   # Or from YAML specification
+   d = Diagram.from_yaml("pipeline.diagram.yaml")
+
+YAML Specification
+------------------
+
+.. code-block:: yaml
+
+   type: workflow
+   title: SciTeX Analysis Pipeline
+
+   paper:
+     column: single          # single or double
+     mode: publication       # draft or publication
+     reading_direction: left_to_right
+
+   layout:
+     groups:
+       Input: [load, preprocess]
+       Analysis: [analyze, test]
+
+   nodes:
+     - id: load
+       label: Load Data
+       shape: stadium
+     - id: analyze
+       label: Statistical Test
+       shape: rounded
+       emphasis: primary
+
+   edges:
+     - from: load
+       to: analyze
+
+Node Shapes
+------------
+
+``box``, ``rounded``, ``stadium``, ``diamond``, ``circle``, ``codeblock``
+
+Node Emphasis
+-------------
+
+- ``normal`` -- Default (dark)
+- ``primary`` -- Key nodes (blue)
+- ``success`` -- Positive outcomes (green)
+- ``warning`` -- Issues (red)
+- ``muted`` -- Secondary (gray)
+
+Diagram Types
+-------------
+
+- ``workflow`` -- Left-to-right sequential processes
+- ``decision`` -- Top-to-bottom decision trees
+- ``pipeline`` -- Data pipeline stages
+- ``hierarchy`` -- Tree structures
+- ``comparison`` -- Side-by-side comparison
+
+Paper Modes
+-----------
+
+- **draft** -- Full arrows, medium spacing, all edges visible
+- **publication** -- Tight spacing, return edges invisible, optimized for column width
+
+Backends
+--------
+
+- **Mermaid** (``.mmd``) -- Web/markdown rendering
+- **Graphviz DOT** (``.dot``) -- Tighter layouts, render with ``dot -Tpng``
+- **YAML** (``.diagram.yaml``) -- Semantic spec, human/LLM-readable
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.diagram` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/dict.rst.txt b/src/scitex/_sphinx_html/_sources/modules/dict.rst.txt
new file mode 100644
index 000000000..156005490
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/dict.rst.txt
@@ -0,0 +1,4 @@
+dict Module (``stx.dict``)
+==========================
+
+See :doc:`/api/scitex.dict` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/dsp.rst.txt b/src/scitex/_sphinx_html/_sources/modules/dsp.rst.txt
new file mode 100644
index 000000000..fc502bd2b
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/dsp.rst.txt
@@ -0,0 +1,74 @@
+DSP Module (``stx.dsp``)
+========================
+
+Digital signal processing tools for filtering, spectral analysis,
+and time-frequency decomposition.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+    import numpy as np
+
+    # Generate test signal
+    fs = 1000  # Hz
+    t = np.arange(0, 1, 1/fs)
+    signal = np.sin(2 * np.pi * 10 * t) + 0.5 * np.sin(2 * np.pi * 50 * t)
+
+    # Filtering
+    filtered = stx.dsp.filt.bandpass(signal, fs=fs, low=5, high=30)
+    low_pass = stx.dsp.filt.lowpass(signal, fs=fs, cutoff=20)
+    high_pass = stx.dsp.filt.highpass(signal, fs=fs, cutoff=5)
+
+    # Power spectral density
+    freqs, psd = stx.dsp.psd(signal, fs=fs)
+
+    # Band powers
+    powers = stx.dsp.band_powers(signal, fs=fs, bands={
+        "delta": (1, 4),
+        "theta": (4, 8),
+        "alpha": (8, 13),
+        "beta": (13, 30),
+    })
+
+    # Hilbert transform (analytic signal)
+    analytic = stx.dsp.hilbert(signal)
+    amplitude = np.abs(analytic)
+    phase = np.angle(analytic)
+
+    # Wavelet decomposition
+    coeffs = stx.dsp.wavelet(signal, fs=fs, freqs=np.arange(1, 50))
+
+Available Functions
+-------------------
+
+**Filtering** (``stx.dsp.filt``)
+
+- ``bandpass(signal, fs, low, high)``
+- ``lowpass(signal, fs, cutoff)``
+- ``highpass(signal, fs, cutoff)``
+- ``notch(signal, fs, freq)``
+
+**Spectral Analysis**
+
+- ``psd(signal, fs)`` -- Power spectral density
+- ``band_powers(signal, fs, bands)`` -- Power in frequency bands
+- ``wavelet(signal, fs, freqs)`` -- Continuous wavelet transform
+
+**Time-Frequency**
+
+- ``hilbert(signal)`` -- Analytic signal via Hilbert transform
+- ``pac(signal, fs)`` -- Phase-amplitude coupling
+
+**Utilities**
+
+- ``demo_sig(fs, duration)`` -- Generate demo signals for testing
+- ``crop(signal, start, end, fs)`` -- Crop signal to time range
+- ``detect_ripples(signal, fs)`` -- Detect sharp-wave ripples
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.dsp` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/etc.rst.txt b/src/scitex/_sphinx_html/_sources/modules/etc.rst.txt
new file mode 100644
index 000000000..485270b22
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/etc.rst.txt
@@ -0,0 +1,4 @@
+etc Module (``stx.etc``)
+========================
+
+See :doc:`/api/scitex.etc` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/events.rst.txt b/src/scitex/_sphinx_html/_sources/modules/events.rst.txt
new file mode 100644
index 000000000..098e8048d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/events.rst.txt
@@ -0,0 +1,4 @@
+events Module (``stx.events``)
+==============================
+
+See :doc:`/api/scitex.events` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/gen.rst.txt b/src/scitex/_sphinx_html/_sources/modules/gen.rst.txt
new file mode 100644
index 000000000..48539cbe7
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/gen.rst.txt
@@ -0,0 +1,36 @@
+Gen Module (``stx.gen``)
+========================
+
+General utilities for path management, shell commands, and system operations.
+
+.. note::
+
+   Session management has moved to ``@stx.session`` (see :doc:`/core_concepts`).
+   The ``scitex.gen.start()`` / ``scitex.gen.close()`` pattern is deprecated.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+
+    # Timestamped output directories
+    path = stx.gen.mk_spath("./results")
+    # → ./results/20260213_143022/
+
+    # Run shell commands
+    stx.gen.run("ls -la")
+
+    # Clipboard operations
+    stx.gen.copy("text to clipboard")
+    text = stx.gen.paste()
+
+    # String to valid path
+    stx.gen.title2path("My Experiment #1")
+    # → "my_experiment_1"
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.gen` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/gists.rst.txt b/src/scitex/_sphinx_html/_sources/modules/gists.rst.txt
new file mode 100644
index 000000000..1adc47fff
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/gists.rst.txt
@@ -0,0 +1,4 @@
+gists Module (``stx.gists``)
+============================
+
+See :doc:`/api/scitex.gists` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/git.rst.txt b/src/scitex/_sphinx_html/_sources/modules/git.rst.txt
new file mode 100644
index 000000000..a6a0e0d7e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/git.rst.txt
@@ -0,0 +1,4 @@
+git Module (``stx.git``)
+========================
+
+See :doc:`/api/scitex.git` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/index.rst.txt b/src/scitex/_sphinx_html/_sources/modules/index.rst.txt
new file mode 100644
index 000000000..0c60cea18
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/index.rst.txt
@@ -0,0 +1,111 @@
+Module Overview
+===============
+
+SciTeX is organized into focused modules.
+All modules are accessible via ``import scitex as stx`` followed by ``stx.<module>``.
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Core
+
+   session
+   io
+   config
+   logging
+   repro
+   clew
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Science & Analysis
+
+   stats
+   plt
+   dsp
+   diagram
+   canvas
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Literature & Writing
+
+   scholar
+   writer
+   notebook
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Machine Learning
+
+   ai
+   nn
+   torch
+   cv
+   benchmark
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Data & I/O
+
+   pd
+   db
+   dataset
+   schema
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Infrastructure
+
+   app
+   cloud
+   container
+   tunnel
+   cli
+   browser
+   capture
+   audio
+   notify
+   social
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Utilities
+
+   gen
+   template
+   decorators
+   introspect
+   str
+   dict
+   path
+   os
+   sh
+   git
+   parallel
+   linalg
+   datetime
+   types
+   rng
+   context
+   resource
+   utils
+   etc
+   web
+   msword
+   tex
+   bridge
+   compat
+   module
+   gists
+   media
+   security
+   ui
+   dev
+   audit
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Other
+
+   events
+   project
diff --git a/src/scitex/_sphinx_html/_sources/modules/introspect.rst.txt b/src/scitex/_sphinx_html/_sources/modules/introspect.rst.txt
new file mode 100644
index 000000000..e7fe4fa1a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/introspect.rst.txt
@@ -0,0 +1,70 @@
+Introspect Module (``stx.introspect``)
+=======================================
+
+IPython-like code inspection for exploring Python packages.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Function signature (like IPython's func?)
+   stx.introspect.q("scitex.stats.test_ttest_ind")
+   # → name, signature, parameters, return type
+
+   # Full source code (like IPython's func??)
+   stx.introspect.qq("scitex.stats.test_ttest_ind")
+   # → complete source with line numbers
+
+   # List module members (like enhanced dir())
+   stx.introspect.dir("scitex.plt", filter="public", kind="functions")
+
+   # Recursive API tree
+   df = stx.introspect.list_api("scitex", max_depth=2)
+
+IPython-Style Shortcuts
+-----------------------
+
+- ``q(dotted_path)`` -- Signature and parameters (like ``func?``)
+- ``qq(dotted_path)`` -- Full source code (like ``func??``)
+- ``dir(dotted_path, filter, kind)`` -- List members with filtering
+
+Filters: ``"public"``, ``"private"``, ``"dunder"``, ``"all"``
+
+Kinds: ``"functions"``, ``"classes"``, ``"data"``, ``"modules"``
+
+Documentation
+-------------
+
+- ``get_docstring(path, format)`` -- Extract docstrings (``"raw"``, ``"parsed"``, ``"summary"``)
+- ``get_exports(path)`` -- Get ``__all__`` exports
+- ``find_examples(path)`` -- Find usage examples in tests/examples
+
+Type Analysis
+-------------
+
+- ``get_type_hints_detailed(path)`` -- Full type annotation analysis
+- ``get_class_hierarchy(path)`` -- Inheritance tree (MRO + subclasses)
+- ``get_class_annotations(path)`` -- Class variable annotations
+
+Code Analysis
+-------------
+
+- ``get_imports(path, categorize)`` -- All imports (AST-based, grouped by stdlib/third-party/local)
+- ``get_dependencies(path, recursive)`` -- Module dependency tree
+- ``get_call_graph(path, max_depth)`` -- Function call graph (with timeout protection)
+
+API Tree
+--------
+
+.. code-block:: python
+
+   # Generate full module tree as DataFrame
+   df = stx.introspect.list_api("scitex", max_depth=3, docstring=True)
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.introspect` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/io.rst.txt b/src/scitex/_sphinx_html/_sources/modules/io.rst.txt
new file mode 100644
index 000000000..222150bb8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/io.rst.txt
@@ -0,0 +1,115 @@
+IO Module (``stx.io``)
+======================
+
+Universal file I/O through ``stx.io.save()`` and ``stx.io.load()``.
+Format is determined by file extension.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+
+    # Save
+    stx.io.save(data, "output.csv")       # DataFrame → CSV
+    stx.io.save(arr, "output.npy")        # ndarray → NumPy
+    stx.io.save(fig, "output.png")        # Figure → PNG + CSV + YAML recipe
+    stx.io.save(obj, "output.pkl")        # any object → pickle
+    stx.io.save(d, "output.yaml")         # dict → YAML
+    stx.io.save(d, "output.json")         # dict → JSON
+
+    # Load
+    data = stx.io.load("input.csv")       # → DataFrame
+    arr = stx.io.load("input.npy")        # → ndarray
+    obj = stx.io.load("input.pkl")        # → original object
+    d = stx.io.load("input.yaml")         # → dict
+
+Supported Formats
+-----------------
+
+.. list-table::
+   :header-rows: 1
+
+   * - Extension
+     - Save Type
+     - Load Return
+   * - ``.csv``
+     - DataFrame, dict, ndarray
+     - DataFrame
+   * - ``.npy``
+     - ndarray
+     - ndarray
+   * - ``.npz``
+     - dict of ndarrays
+     - NpzFile
+   * - ``.pkl`` / ``.pickle``
+     - any Python object
+     - original object
+   * - ``.yaml`` / ``.yml``
+     - dict
+     - dict
+   * - ``.json``
+     - dict, list
+     - dict or list
+   * - ``.png`` / ``.jpg`` / ``.svg`` / ``.pdf`` / ``.tiff``
+     - matplotlib Figure
+     - ndarray (image) or Figure
+   * - ``.hdf5`` / ``.h5``
+     - dict, ndarray
+     - dict or ndarray
+   * - ``.mat``
+     - dict
+     - dict
+   * - ``.pth`` / ``.pt``
+     - PyTorch state_dict
+     - dict
+   * - ``.parquet``
+     - DataFrame
+     - DataFrame
+   * - ``.txt``
+     - str
+     - str
+
+Figure Saving
+-------------
+
+When saving a matplotlib Figure, ``stx.io.save`` automatically:
+
+1. Saves the image file (``.png``, ``.svg``, etc.)
+2. Exports a ``.csv`` with the plotted data extracted from axes
+3. Exports a ``.yaml`` recipe for reproducing the figure
+
+.. code-block:: python
+
+    fig, ax = stx.plt.subplots()
+    ax.plot_line(x, y, label="signal")
+    stx.io.save(fig, "results/plot.png")
+    # Creates:
+    #   results/plot.png       (the figure)
+    #   results/plot.csv       (x, y data)
+    #   results/plot.yaml      (recipe for stx.plt.reproduce)
+
+Provenance Tracking
+-------------------
+
+Inside ``@stx.session``, every ``save`` and ``load`` records file hashes
+to a local SQLite database for reproducibility verification.
+
+.. code-block:: python
+
+    @stx.session
+    def main(logger=stx.INJECTED, **kw):
+        data = stx.io.load("input.csv")    # hash recorded as input
+        stx.io.save(result, "output.csv")   # hash recorded as output
+
+Other Functions
+---------------
+
+- ``stx.io.glob(pattern)`` -- Find files matching a glob pattern
+- ``stx.io.load_configs(config_dir)`` -- Load and merge YAML config files
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.io` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/linalg.rst.txt b/src/scitex/_sphinx_html/_sources/modules/linalg.rst.txt
new file mode 100644
index 000000000..fbc5a46ca
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/linalg.rst.txt
@@ -0,0 +1,4 @@
+linalg Module (``stx.linalg``)
+==============================
+
+See :doc:`/api/scitex.linalg` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/linter.rst.txt b/src/scitex/_sphinx_html/_sources/modules/linter.rst.txt
new file mode 100644
index 000000000..bdcde77b9
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/linter.rst.txt
@@ -0,0 +1,131 @@
+Linter Module (``stx.linter``)
+===============================
+
+AST-based Python linter enforcing SciTeX conventions for reproducible
+scientific code.
+
+.. note::
+
+   ``stx.linter`` wraps the standalone
+   `scitex-linter <https://github.com/ywatanabe1989/scitex-linter>`_ package.
+   Install with: ``pip install scitex-linter``.
+
+Quick Reference
+---------------
+
+.. code-block:: bash
+
+   # Check a file
+   scitex linter check my_script.py
+
+   # Check with specific severity
+   scitex linter check my_script.py --severity warning
+
+   # List all rules
+   scitex linter list-rules
+
+   # Filter by category
+   scitex linter list-rules --category session
+
+.. code-block:: python
+
+   from scitex_linter import check_file, list_rules
+
+   # Check a file
+   results = check_file("my_script.py")
+
+   # List available rules
+   rules = list_rules()
+
+Rule Categories
+---------------
+
+45 rules across 8 categories:
+
+.. list-table::
+   :header-rows: 1
+   :widths: 15 25 60
+
+   * - Prefix
+     - Category
+     - Examples
+   * - ``STX-S``
+     - **Session**
+     - Missing ``@stx.session``, missing ``if __name__`` guard, missing return
+   * - ``STX-I``
+     - **Import**
+     - Using ``import mngs`` instead of ``import scitex``, bare ``import numpy``
+   * - ``STX-IO``
+     - **I/O**
+     - Using ``open()`` instead of ``stx.io``, hardcoded paths
+   * - ``STX-P``
+     - **Plotting**
+     - Using ``plt.show()`` instead of ``stx.io.save``, missing ``set_xyt``
+   * - ``STX-ST``
+     - **Statistics**
+     - Using ``scipy.stats`` directly instead of ``stx.stats``
+   * - ``STX-PA``
+     - **Path**
+     - Hardcoded absolute paths, missing ``stx.gen.mk_spath``
+   * - ``STX-FM``
+     - **Format**
+     - Non-snake_case names, magic numbers, missing docstrings
+
+Severity Levels
+---------------
+
+- **error** -- Must fix (breaks reproducibility or correctness)
+- **warning** -- Should fix (best practice violations)
+- **info** -- Suggestions for improvement
+
+Interfaces
+----------
+
+The linter is available through multiple interfaces:
+
+**CLI:**
+
+.. code-block:: bash
+
+   scitex linter check script.py
+   scitex-linter check script.py    # standalone CLI
+
+**Python API:**
+
+.. code-block:: python
+
+   from scitex_linter import check_file, check_source
+
+   results = check_file("script.py")
+   results = check_source("import numpy as np\n...")
+
+**Flake8 Plugin:**
+
+.. code-block:: bash
+
+   flake8 --select=STX script.py
+
+**MCP Tools:**
+
+.. code-block:: python
+
+   # Available as MCP tools for AI agents
+   linter_check(path="script.py", severity="warning")
+   linter_list_rules(category="session")
+   linter_check_source(source="...", filepath="<stdin>")
+
+Configuration
+-------------
+
+Configure via ``pyproject.toml``:
+
+.. code-block:: toml
+
+   [tool.scitex-linter]
+   severity = "warning"
+   ignore = ["STX-S002", "STX-FM001"]
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.linter` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/logging.rst.txt b/src/scitex/_sphinx_html/_sources/modules/logging.rst.txt
new file mode 100644
index 000000000..299227548
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/logging.rst.txt
@@ -0,0 +1,107 @@
+Logging Module (``stx.logging``)
+=================================
+
+Unified logging with file/console output, custom warnings, exception
+hierarchy, and stream redirection.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+   from scitex import logging
+
+   # Get a logger
+   logger = logging.getLogger(__name__)
+   logger.info("Processing data")
+   logger.success("Analysis complete")   # Custom level (31)
+   logger.fail("Model diverged")         # Custom level (35)
+
+   # Configure globally
+   logging.configure(level="DEBUG", log_file="./run.log")
+   logging.set_level("WARNING")
+
+   # Temporary file logging
+   with logging.log_to_file("analysis.log"):
+       logger.info("This goes to both console and file")
+
+   # Warnings
+   logging.warn("Large dataset", category=logging.PerformanceWarning)
+   logging.warn_deprecated("old_func", "new_func", version="3.0")
+   logging.filterwarnings("ignore", category=logging.UnitWarning)
+
+Log Levels
+----------
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 15 65
+
+   * - Level
+     - Value
+     - Description
+   * - ``DEBUG``
+     - 10
+     - Detailed diagnostic information
+   * - ``INFO``
+     - 20
+     - General operational messages
+   * - ``WARNING``
+     - 30
+     - Something unexpected but not fatal
+   * - ``SUCCESS``
+     - 31
+     - Custom: operation completed successfully
+   * - ``FAIL``
+     - 35
+     - Custom: operation failed (non-fatal)
+   * - ``ERROR``
+     - 40
+     - Serious problem
+   * - ``CRITICAL``
+     - 50
+     - Program may not continue
+
+Warning Categories
+------------------
+
+- ``SciTeXWarning`` -- Base warning class
+- ``UnitWarning`` -- SI unit convention issues
+- ``StyleWarning`` -- Formatting issues
+- ``SciTeXDeprecationWarning`` -- Deprecated features
+- ``PerformanceWarning`` -- Performance issues
+- ``DataLossWarning`` -- Potential data loss
+
+Exception Hierarchy
+-------------------
+
+All inherit from ``SciTeXError``:
+
+- **I/O**: ``IOError``, ``FileFormatError``, ``SaveError``, ``LoadError``
+- **Config**: ``ConfigurationError``, ``ConfigFileNotFoundError``, ``ConfigKeyError``
+- **Path**: ``PathError``, ``InvalidPathError``, ``PathNotFoundError``
+- **Data**: ``DataError``, ``ShapeError``, ``DTypeError``
+- **Plotting**: ``PlottingError``, ``FigureNotFoundError``, ``AxisError``
+- **Stats**: ``StatsError``, ``TestError``
+- **Scholar**: ``ScholarError``, ``SearchError``, ``PDFDownloadError``, ``DOIResolutionError``
+- **NN**: ``NNError``, ``ModelError``
+- **Template**: ``TemplateError``, ``TemplateViolationError``
+
+Stream Redirection
+------------------
+
+.. code-block:: python
+
+   from scitex.logging import tee
+   import sys
+
+   # Redirect stdout/stderr to log files
+   sys.stdout, sys.stderr = tee(sys, sdir="./output")
+
+The ``@stx.session`` decorator handles this automatically.
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.logging` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/media.rst.txt b/src/scitex/_sphinx_html/_sources/modules/media.rst.txt
new file mode 100644
index 000000000..22313640a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/media.rst.txt
@@ -0,0 +1,4 @@
+media Module (``stx.media``)
+============================
+
+See :doc:`/api/scitex.media` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/module.rst.txt b/src/scitex/_sphinx_html/_sources/modules/module.rst.txt
new file mode 100644
index 000000000..1c9d3aa8b
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/module.rst.txt
@@ -0,0 +1,4 @@
+module Module (``stx.module``)
+==============================
+
+See :doc:`/api/scitex.module` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/msword.rst.txt b/src/scitex/_sphinx_html/_sources/modules/msword.rst.txt
new file mode 100644
index 000000000..9254b4da2
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/msword.rst.txt
@@ -0,0 +1,4 @@
+msword Module (``stx.msword``)
+==============================
+
+See :doc:`/api/scitex.msword` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/nn.rst.txt b/src/scitex/_sphinx_html/_sources/modules/nn.rst.txt
new file mode 100644
index 000000000..0239f5b86
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/nn.rst.txt
@@ -0,0 +1,79 @@
+NN Module (``stx.nn``)
+======================
+
+PyTorch neural network layers for signal processing and neuroscience
+applications.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+   import torch
+
+   # Bandpass filtering as a differentiable layer
+   bpf = stx.nn.BandPassFilter(
+       bands=[[4, 8], [8, 13], [13, 30]],  # theta, alpha, beta
+       fs=256, seq_len=1024
+   )
+   filtered = bpf(signal)  # (batch, channels, 3, 1024)
+
+   # Power spectral density
+   psd = stx.nn.PSD(sample_rate=256)
+   power, freqs = psd(signal)
+
+   # Phase-amplitude coupling
+   pac = stx.nn.PAC(seq_len=1024, fs=256)
+   coupling = pac(signal)
+
+Signal Processing Layers
+-------------------------
+
+**Filtering** (all differentiable):
+
+- ``BandPassFilter(bands, fs, seq_len)`` -- Multi-band frequency filtering
+- ``BandStopFilter(bands, fs, seq_len)`` -- Reject frequency bands
+- ``LowPassFilter(cutoffs_hz, fs, seq_len)`` -- Anti-aliasing / smoothing
+- ``HighPassFilter(cutoffs_hz, fs, seq_len)`` -- High-frequency emphasis
+- ``GaussianFilter(sigma)`` -- Gaussian kernel smoothing
+- ``DifferentiableBandPassFilter(...)`` -- Learnable bandpass parameters
+
+**Spectral Analysis**:
+
+- ``Spectrogram(sampling_rate, n_fft)`` -- STFT-based magnitude spectrogram
+- ``PSD(sample_rate, prob)`` -- FFT-based power spectral density
+- ``Wavelet(samp_rate, freq_scale)`` -- Continuous wavelet transform
+
+**Phase & Coupling**:
+
+- ``Hilbert(seq_len)`` -- Analytic signal (phase + amplitude)
+- ``ModulationIndex(n_bins)`` -- Phase-amplitude coupling metric
+- ``PAC(seq_len, fs, ...)`` -- Complete PAC analysis pipeline
+
+Channel Manipulation
+--------------------
+
+- ``SwapChannels()`` -- Random channel permutation (training augmentation)
+- ``DropoutChannels(dropout)`` -- Drop entire channels
+- ``ChannelGainChanger(n_chs)`` -- Learnable per-channel scaling
+- ``FreqGainChanger(n_bands, fs)`` -- Learnable per-band scaling
+
+Attention & Shape
+-----------------
+
+- ``SpatialAttention(n_chs_in)`` -- Adaptive channel weighting
+- ``TransposeLayer(axis1, axis2)`` -- Dimension permutation
+- ``AxiswiseDropout(dropout_prob, dim)`` -- Drop entire axis
+
+Architectures
+-------------
+
+- ``ResNet1D(n_chs, n_out, n_blks)`` -- 1D residual network
+- ``BNet`` / ``BNet_Res`` -- Multi-head EEG classifier
+- ``MNet1000`` -- 2D CNN feature extractor
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.nn` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/notebook.rst.txt b/src/scitex/_sphinx_html/_sources/modules/notebook.rst.txt
new file mode 100644
index 000000000..00b17aa97
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/notebook.rst.txt
@@ -0,0 +1,4 @@
+notebook Module (``stx.notebook``)
+==================================
+
+See :doc:`/api/scitex.notebook` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/notify.rst.txt b/src/scitex/_sphinx_html/_sources/modules/notify.rst.txt
new file mode 100644
index 000000000..32373f3c8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/notify.rst.txt
@@ -0,0 +1,4 @@
+notify Module (``stx.notify``)
+==============================
+
+See :doc:`/api/scitex.notify` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/os.rst.txt b/src/scitex/_sphinx_html/_sources/modules/os.rst.txt
new file mode 100644
index 000000000..b6405d019
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/os.rst.txt
@@ -0,0 +1,4 @@
+os Module (``stx.os``)
+======================
+
+See :doc:`/api/scitex.os` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/parallel.rst.txt b/src/scitex/_sphinx_html/_sources/modules/parallel.rst.txt
new file mode 100644
index 000000000..24942b28c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/parallel.rst.txt
@@ -0,0 +1,4 @@
+parallel Module (``stx.parallel``)
+==================================
+
+See :doc:`/api/scitex.parallel` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/path.rst.txt b/src/scitex/_sphinx_html/_sources/modules/path.rst.txt
new file mode 100644
index 000000000..ca9d7d7cd
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/path.rst.txt
@@ -0,0 +1,4 @@
+path Module (``stx.path``)
+==========================
+
+See :doc:`/api/scitex.path` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/pd.rst.txt b/src/scitex/_sphinx_html/_sources/modules/pd.rst.txt
new file mode 100644
index 000000000..540d969bd
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/pd.rst.txt
@@ -0,0 +1,45 @@
+PD Module (``stx.pd``)
+======================
+
+Pandas DataFrame helper functions for common transformations.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+    import pandas as pd
+
+    df = pd.DataFrame({
+        "subject": ["A", "A", "B", "B"],
+        "condition": ["ctrl", "exp", "ctrl", "exp"],
+        "score": [10, 15, 12, 18],
+    })
+
+    # Find individual (unique) values
+    subjects = stx.pd.find_indi(df, "subject")
+
+    # Convert to long format
+    melted = stx.pd.melt_cols(df, id_vars=["subject"])
+
+    # Merge columns
+    merged = stx.pd.merge_cols(df, cols=["subject", "condition"], sep="_")
+
+    # Force to DataFrame
+    stx.pd.force_df({"a": [1, 2], "b": [3, 4]})
+
+Available Functions
+-------------------
+
+- ``find_indi(df, col)`` -- Find unique individual identifiers
+- ``find_pval(df)`` -- Find p-value columns in a DataFrame
+- ``force_df(data)`` -- Convert any data to a DataFrame
+- ``melt_cols(df, id_vars)`` -- Melt columns to long format
+- ``merge_cols(df, cols, sep)`` -- Merge multiple columns into one
+- ``to_xyz(df, x, y, z)`` -- Reshape to x, y, z pivot format
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.pd` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/plt.rst.txt b/src/scitex/_sphinx_html/_sources/modules/plt.rst.txt
new file mode 100644
index 000000000..41a0c4b1f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/plt.rst.txt
@@ -0,0 +1,161 @@
+PLT Module (``stx.plt``)
+========================
+
+Publication-ready figures powered by `figrecipe <https://github.com/ywatanabe1989/figrecipe>`_.
+
+.. note::
+
+   ``stx.plt`` wraps matplotlib via the **figrecipe** package, adding
+   mm-based layout, data-tracking axes, auto CSV export, and reproducible
+   YAML recipes. The standalone package can also be used directly:
+   ``pip install figrecipe``.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Create figure (returns FigWrapper, AxisWrapper)
+   fig, ax = stx.plt.subplots()
+   fig, axes = stx.plt.subplots(2, 2)
+
+   # Data-tracking plot methods (all record data for CSV export)
+   ax.plot_line(x, y, label="signal")
+   ax.plot_scatter(x, y, alpha=0.5)
+   ax.plot_bar(labels, values)
+   ax.plot_heatmap(matrix)
+   ax.plot_violin(groups)
+   ax.plot_box(groups)
+   ax.plot_kde(data)
+
+   # Axis helper (xlabel, ylabel, title in one call)
+   ax.set_xyt("Time (s)", "Amplitude (mV)", "EEG Signal")
+
+   # Save (auto-exports CSV + YAML recipe)
+   stx.io.save(fig, "figure.png")
+
+Plot Types (47)
+---------------
+
+All ``ax.plot_*`` methods track their input data so it can be exported as CSV.
+
+.. list-table::
+   :header-rows: 1
+   :widths: 25 75
+
+   * - Category
+     - Types
+   * - **Line & Curve**
+     - ``plot``, ``step``, ``fill``, ``fill_between``, ``fill_betweenx``, ``errorbar``, ``stackplot``, ``stairs``
+   * - **Scatter & Points**
+     - ``scatter``
+   * - **Bar & Categorical**
+     - ``bar``, ``barh``
+   * - **Distribution**
+     - ``hist``, ``hist2d``, ``boxplot``, ``violinplot``, ``ecdf``
+   * - **2D Image & Matrix**
+     - ``imshow``, ``matshow``, ``pcolor``, ``pcolormesh``, ``hexbin``, ``spy``
+   * - **Contour & Surface**
+     - ``contour``, ``contourf``, ``tricontour``, ``tricontourf``, ``tripcolor``, ``triplot``
+   * - **Spectral & Signal**
+     - ``specgram``, ``psd``, ``csd``, ``cohere``, ``angle_spectrum``, ``magnitude_spectrum``, ``phase_spectrum``, ``acorr``, ``xcorr``
+   * - **Vector & Flow**
+     - ``quiver``, ``barbs``, ``streamplot``
+   * - **Special**
+     - ``pie``, ``stem``, ``eventplot``, ``loglog``, ``semilogx``, ``semilogy``, ``graph``
+
+Standard matplotlib methods (``ax.plot``, ``ax.scatter``, etc.) also work
+and are tracked.
+
+MM-Based Layout
+---------------
+
+Figures use millimeter dimensions for precise control:
+
+.. code-block:: python
+
+   fig, ax = stx.plt.subplots(
+       axes_width_mm=80,
+       axes_height_mm=60,
+   )
+
+   # Multi-panel with exact spacing
+   fig, axes = stx.plt.subplots(
+       nrows=2, ncols=3,
+       axes_width_mm=50,
+       axes_height_mm=40,
+   )
+
+Axis Helpers
+------------
+
+.. code-block:: python
+
+   # Set xlabel, ylabel, title in one call
+   ax.set_xyt("X Label", "Y Label", "Title")
+
+   # Automatic axis label formatting with units
+   ax.set_xyt("Frequency (Hz)", "Power (dB)", "Power Spectrum")
+
+Figure Composition
+------------------
+
+Combine multiple figures into panels:
+
+.. code-block:: python
+
+   # Compose panels A, B, C
+   stx.plt.compose(
+       sources=["fig_a.png", "fig_b.png", "fig_c.png"],
+       output_path="combined.png",
+       layout="horizontal",
+       panel_labels=True,
+   )
+
+Statistical Annotations
+-----------------------
+
+Add significance brackets to figures:
+
+.. code-block:: python
+
+   # In the declarative spec
+   stat_annotations:
+     - x1: 0
+       x2: 1
+       y: 5.5
+       text: "***"
+     - x1: 0
+       x2: 2
+       y: 6.5
+       p_value: 0.02
+       style: stars
+
+Reproducible Figures
+--------------------
+
+When saved via ``stx.io.save``, figures get a ``.yaml`` recipe.
+Reproduce any figure from its recipe:
+
+.. code-block:: python
+
+   stx.plt.reproduce("figure.yaml", output_path="reproduced.png")
+
+Style Presets
+-------------
+
+.. code-block:: python
+
+   import figrecipe as fr
+
+   fr.load_style("SCITEX")       # Publication defaults
+   fr.load_style("MATPLOTLIB")   # Standard matplotlib
+
+See the :doc:`/gallery` for visual examples.
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.plt` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/project.rst.txt b/src/scitex/_sphinx_html/_sources/modules/project.rst.txt
new file mode 100644
index 000000000..10402cc17
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/project.rst.txt
@@ -0,0 +1,4 @@
+project Module (``stx.project``)
+================================
+
+See :doc:`/api/scitex.project` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/repro.rst.txt b/src/scitex/_sphinx_html/_sources/modules/repro.rst.txt
new file mode 100644
index 000000000..2c7789763
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/repro.rst.txt
@@ -0,0 +1,70 @@
+Repro Module (``stx.repro``)
+============================
+
+Reproducibility utilities: random state management, ID generation,
+timestamps, and array hashing.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Fix all random seeds (numpy, torch, random, ...)
+   rng = stx.repro.get()           # Global manager (seed=42)
+   rng = stx.repro.reset(seed=123) # Reset with new seed
+
+   # Named generators for deterministic results
+   data_gen = rng.get_np_generator("data")
+   data = data_gen.random(100)  # Same seed+name = same result
+
+   # Unique identifiers
+   stx.repro.gen_id()
+   # → "2026Y-02M-13D-14h30m15s_a3Bc9xY2"
+
+   stx.repro.gen_timestamp()
+   # → "2026-0213-1430"
+
+   # Verify reproducibility
+   rng.verify(data, "train_data")  # First: caches hash
+   rng.verify(data, "train_data")  # Later: verifies match
+
+RandomStateManager
+------------------
+
+Central class for managing random states across libraries.
+
+.. code-block:: python
+
+   rng = stx.repro.RandomStateManager(seed=42)
+
+   # Named generators (same name + seed = deterministic)
+   np_gen = rng.get_np_generator("experiment")
+   torch_gen = rng.get_torch_generator("model")
+
+   # Checkpoint and restore
+   rng.checkpoint("before_training")
+   rng.restore("before_training.pkl")
+
+   # Temporary seed change
+   with rng.temporary_seed(999):
+       noise = rng.get_np_generator("noise").random(10)
+
+Automatically fixes seeds for: ``random``, ``numpy``, ``torch`` (+ CUDA),
+``tensorflow``, ``jax``.
+
+Available Functions
+-------------------
+
+- ``get(verbose)`` -- Get or create global RandomStateManager singleton
+- ``reset(seed, verbose)`` -- Reset global instance with new seed
+- ``fix_seeds(seed, ...)`` -- Legacy function (use RandomStateManager instead)
+- ``gen_id(time_format, N)`` -- Generate unique timestamp + random ID
+- ``gen_timestamp()`` -- Generate timestamp string for file naming
+- ``hash_array(array_data)`` -- SHA256 hash of numpy array (16 chars)
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.repro` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/resource.rst.txt b/src/scitex/_sphinx_html/_sources/modules/resource.rst.txt
new file mode 100644
index 000000000..d5b88ca76
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/resource.rst.txt
@@ -0,0 +1,4 @@
+resource Module (``stx.resource``)
+==================================
+
+See :doc:`/api/scitex.resource` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/rng.rst.txt b/src/scitex/_sphinx_html/_sources/modules/rng.rst.txt
new file mode 100644
index 000000000..31ed089f2
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/rng.rst.txt
@@ -0,0 +1,4 @@
+rng Module (``stx.rng``)
+========================
+
+See :doc:`/api/scitex.rng` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/schema.rst.txt b/src/scitex/_sphinx_html/_sources/modules/schema.rst.txt
new file mode 100644
index 000000000..12c215622
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/schema.rst.txt
@@ -0,0 +1,4 @@
+schema Module (``stx.schema``)
+==============================
+
+See :doc:`/api/scitex.schema` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/scholar.rst.txt b/src/scitex/_sphinx_html/_sources/modules/scholar.rst.txt
new file mode 100644
index 000000000..42ec9fc23
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/scholar.rst.txt
@@ -0,0 +1,131 @@
+Scholar Module (``stx.scholar``)
+=================================
+
+Literature management: search papers, download PDFs, enrich BibTeX,
+and organize a local library across multiple projects.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   from scitex.scholar import Scholar
+
+   scholar = Scholar(project="my_research")
+
+   # Load and enrich BibTeX
+   papers = scholar.load_bibtex("references.bib")
+   enriched = scholar.enrich_papers(papers)
+   # Adds: DOIs, abstracts, citation counts, impact factors
+
+   # Save to library and export
+   scholar.save_papers_to_library(enriched)
+   scholar.save_papers_as_bibtex(enriched, "enriched.bib")
+
+   # Search your library
+   results = scholar.search_library("neural oscillations")
+
+   # Download PDFs
+   scholar.download_pdfs(dois, output_dir)
+
+CLI Usage
+---------
+
+.. code-block:: bash
+
+   # Full pipeline from BibTeX
+   scitex scholar bibtex refs.bib --project myresearch --num-workers 8
+
+   # Search papers
+   scitex scholar search "deep learning EEG"
+
+   # Download PDFs
+   scitex scholar download --doi 10.1038/nature12373
+
+   # Institutional authentication
+   scitex scholar auth --method openathens
+   scitex scholar auth --method shibboleth --institution "MIT"
+
+Data Sources
+------------
+
+Searches and enriches from:
+
+- **CrossRef** (167M+ papers) -- DOI resolution, citation counts
+- **Semantic Scholar** -- Abstracts, references, influence scores
+- **PubMed** -- Biomedical literature
+- **arXiv** -- Preprints
+- **OpenAlex** (284M+ works) -- Open metadata
+
+Key Classes
+-----------
+
+- ``Scholar`` -- Main entry point (search, enrich, download, organize)
+- ``Paper`` -- Type-safe metadata container (Pydantic model)
+- ``Papers`` -- Collection with filtering, sorting, and export
+- ``ScholarConfig`` -- YAML-based configuration
+- ``ScholarLibrary`` -- Local library storage and caching
+
+Paper Metadata
+--------------
+
+Each ``Paper`` contains structured metadata sections:
+
+.. code-block:: python
+
+   paper.metadata.basic          # title, authors, year, abstract, keywords
+   paper.metadata.id             # DOI, arXiv, PMID, Semantic Scholar ID
+   paper.metadata.publication    # journal, impact factor, volume, issue
+   paper.metadata.citation_count # total + yearly breakdown (2015--2024)
+   paper.metadata.url            # DOI URL, publisher, arXiv, PDFs
+   paper.metadata.access         # open access status, license
+
+Filtering and Sorting
+---------------------
+
+.. code-block:: python
+
+   # Criteria-based filtering
+   recent = papers.filter(year_min=2020, has_doi=True)
+   elite = papers.filter(min_impact_factor=10, min_citations=500)
+
+   # Lambda filtering
+   custom = papers.filter(lambda p: "EEG" in (p.metadata.basic.title or ""))
+
+   # Sorting
+   papers.sort_by("year", reverse=True)
+   papers.sort_by("citation_count", reverse=True)
+
+   # Chaining
+   top_recent = papers.filter(year_min=2020).sort_by("citation_count", reverse=True)
+
+Project Organization
+--------------------
+
+.. code-block:: python
+
+   scholar = Scholar(project="review_paper")
+   scholar.list_projects()
+   papers = scholar.load_project()
+
+   # Export to multiple formats
+   scholar.save_papers_as_bibtex(papers, "output.bib")
+   papers.to_dataframe()  # pandas DataFrame
+
+Storage Architecture
+--------------------
+
+.. code-block:: text
+
+   ~/.scitex/scholar/library/
+   +-- MASTER/                     # Centralized master storage
+   |   +-- 8DIGIT01/              # Hash-based unique ID from DOI
+   |   |   +-- metadata.json
+   |   |   +-- paper.pdf
+   +-- project_name/               # Project-specific symlinks
+       +-- Author-Year-Journal -> ../MASTER/8DIGIT01
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.scholar` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/security.rst.txt b/src/scitex/_sphinx_html/_sources/modules/security.rst.txt
new file mode 100644
index 000000000..36f9a0b7a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/security.rst.txt
@@ -0,0 +1,4 @@
+security Module (``stx.security``)
+==================================
+
+See :doc:`/api/scitex.security` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/session.rst.txt b/src/scitex/_sphinx_html/_sources/modules/session.rst.txt
new file mode 100644
index 000000000..6b2f7a491
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/session.rst.txt
@@ -0,0 +1,210 @@
+Session Decorator (``@stx.session``)
+=====================================
+
+The ``@stx.session`` decorator is the primary entry point for SciTeX
+scripts. It wraps a function to provide automatic CLI generation,
+output directory management, configuration injection, and provenance tracking.
+
+Basic Usage
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(
+       data_path="data.csv",       # CLI: --data-path data.csv
+       threshold=0.5,              # CLI: --threshold 0.7
+       CONFIG=stx.INJECTED,        # Auto-injected session config
+       plt=stx.INJECTED,           # Pre-configured matplotlib
+       logger=stx.INJECTED,        # Session logger
+   ):
+       """Analyze experimental data."""
+       data = stx.io.load(data_path)
+       result = process(data, threshold)
+       stx.io.save(result, "output.csv")
+       return 0  # exit code (0 = success)
+
+   if __name__ == "__main__":
+       main()  # No arguments triggers CLI mode
+
+Run from the command line:
+
+.. code-block:: bash
+
+   python my_script.py --data-path experiment.csv --threshold 0.3
+   python my_script.py --help  # Shows all parameters with defaults
+
+How It Works
+------------
+
+.. image:: ../_static/session_lifecycle.png
+   :width: 60%
+   :align: center
+   :alt: Session lifecycle: main() → Parse CLI → Create dir → Load config → Execute → SUCCESS or ERROR
+
+When ``main()`` is called **without arguments**, the decorator:
+
+1. **Parses CLI arguments** from the function signature (type hints and defaults become ``argparse`` options)
+2. **Creates a session directory** under ``script_out/RUNNING/{session_id}/``
+3. **Loads configuration** from ``./config/*.yaml`` files into ``CONFIG``
+4. **Injects globals** (``CONFIG``, ``plt``, ``COLORS``, ``logger``, ``rngg``) into the function
+5. **Redirects stdout/stderr** to log files
+6. **Executes the function** with parsed arguments
+7. **Moves output** from ``RUNNING/`` to ``FINISHED_SUCCESS/`` (or ``FINISHED_ERROR/``)
+
+When called **with arguments** (e.g., ``main(data_path="x.csv")``), the decorator
+is bypassed and the function runs directly -- useful for testing and notebooks.
+
+Output Directory Structure
+--------------------------
+
+Each run produces a self-contained output directory:
+
+.. code-block:: text
+
+   my_script_out/
+   +-- FINISHED_SUCCESS/
+   |   +-- 2026Y-02M-13D-14h30m15s_Z5MR/
+   |       +-- CONFIGS/
+   |       |   +-- CONFIG.yaml     # Frozen configuration
+   |       |   +-- CONFIG.pkl      # Pickled config
+   |       +-- logs/
+   |       |   +-- stdout.log      # Captured stdout
+   |       |   +-- stderr.log      # Captured stderr
+   |       +-- output.csv          # Your saved files
+   |       +-- sine.png            # Your saved figures
+   |       +-- sine.csv            # Auto-exported figure data
+   +-- FINISHED_ERROR/
+   |   +-- ...                     # Runs that returned non-zero
+   +-- RUNNING/
+       +-- ...                     # Currently active sessions
+
+The session ID format is ``YYYY-MM-DD-HH:MM:SS_XXXX`` where ``XXXX`` is
+a random 4-character suffix for uniqueness.
+
+Injected Parameters
+-------------------
+
+Use ``stx.INJECTED`` as the default value to receive auto-injected objects:
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 20 60
+
+   * - Parameter Name
+     - Type
+     - Description
+   * - ``CONFIG``
+     - ``DotDict``
+     - Session config with ``ID``, ``SDIR_RUN``, ``FILE``, ``ARGS``, plus all ``./config/*.yaml`` values
+   * - ``plt``
+     - module
+     - ``matplotlib.pyplot`` configured for the session (Agg backend, style settings)
+   * - ``COLORS``
+     - ``DotDict``
+     - Color palette for consistent plotting
+   * - ``logger``
+     - Logger
+     - SciTeX logger writing to session log files
+   * - ``rngg``
+     - ``RandomStateManager``
+     - Reproducibility manager (seeds fixed by default)
+
+Only request the parameters you need:
+
+.. code-block:: python
+
+   @stx.session
+   def main(n=100, CONFIG=stx.INJECTED):
+       """Minimal example -- only CONFIG injected."""
+       print(f"Session ID: {CONFIG.ID}")
+       print(f"Output dir: {CONFIG.SDIR_RUN}")
+       return 0
+
+CONFIG Object
+-------------
+
+The injected ``CONFIG`` is a ``DotDict`` supporting both dictionary and
+dot-notation access:
+
+.. code-block:: python
+
+   CONFIG["MODEL"]["hidden_size"]   # dict-style
+   CONFIG.MODEL.hidden_size         # dot-style (equivalent)
+
+It contains:
+
+.. code-block:: python
+
+   CONFIG.ID             # "2026Y-02M-13D-14h30m15s_Z5MR"
+   CONFIG.PID            # Process ID
+   CONFIG.FILE           # Path to the script
+   CONFIG.SDIR_OUT       # Base output directory
+   CONFIG.SDIR_RUN       # Current session's output directory
+   CONFIG.START_DATETIME # When the session started
+   CONFIG.ARGS           # Parsed CLI arguments as dict
+   CONFIG.EXIT_STATUS    # 0 (success), 1 (error), or None
+
+Any YAML files in ``./config/`` are merged into CONFIG:
+
+.. code-block:: yaml
+
+   # ./config/EXPERIMENT.yaml
+   learning_rate: 0.001
+   batch_size: 32
+
+.. code-block:: python
+
+   # Accessible as:
+   CONFIG.EXPERIMENT.learning_rate  # 0.001
+   CONFIG.EXPERIMENT.batch_size     # 32
+
+Decorator Options
+-----------------
+
+.. code-block:: python
+
+   @stx.session(verbose=True, agg=False, notify=True, sdir_suffix="v2")
+   def main(...):
+       ...
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 15 15 50
+
+   * - Option
+     - Type
+     - Default
+     - Description
+   * - ``verbose``
+     - bool
+     - ``False``
+     - Enable verbose logging
+   * - ``agg``
+     - bool
+     - ``True``
+     - Use matplotlib Agg backend (set ``False`` for interactive plots)
+   * - ``notify``
+     - bool
+     - ``False``
+     - Send notification when session completes
+   * - ``sdir_suffix``
+     - str
+     - ``None``
+     - Append suffix to output directory name
+
+Best Practices
+--------------
+
+1. **One session per script** -- each ``.py`` file should have one ``@stx.session`` function
+2. **Return 0 for success** -- the return value becomes the exit status
+3. **Save outputs with** ``stx.io.save`` -- files go into the session directory and are provenance-tracked
+4. **Put config in YAML** -- use ``./config/*.yaml`` instead of hardcoding parameters
+5. **Use** ``stx.repro.fix_seeds()`` -- already called by default via ``rngg``
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.session` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/sh.rst.txt b/src/scitex/_sphinx_html/_sources/modules/sh.rst.txt
new file mode 100644
index 000000000..4cc94f3ae
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/sh.rst.txt
@@ -0,0 +1,4 @@
+sh Module (``stx.sh``)
+======================
+
+See :doc:`/api/scitex.sh` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/social.rst.txt b/src/scitex/_sphinx_html/_sources/modules/social.rst.txt
new file mode 100644
index 000000000..28daf833d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/social.rst.txt
@@ -0,0 +1,4 @@
+social Module (``stx.social``)
+==============================
+
+See :doc:`/api/scitex.social` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/stats.rst.txt b/src/scitex/_sphinx_html/_sources/modules/stats.rst.txt
new file mode 100644
index 000000000..5cf6bbf74
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/stats.rst.txt
@@ -0,0 +1,152 @@
+Stats Module (``stx.stats``)
+============================
+
+23 statistical tests with effect sizes, confidence intervals, and
+publication-ready formatting.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+    import numpy as np
+
+    g1 = np.random.normal(0, 1, 50)
+    g2 = np.random.normal(0.5, 1, 50)
+
+    # Run a test
+    result = stx.stats.test_ttest_ind(g1, g2)
+
+    # Result is a flat dict with all details
+    print(result["statistic"])     # t-statistic
+    print(result["pvalue"])        # p-value
+    print(result["effect_size"])   # Cohen's d
+    print(result["stars"])         # Significance stars
+
+    # Get as DataFrame or LaTeX
+    df = stx.stats.test_ttest_ind(g1, g2, return_as="dataframe")
+    tex = stx.stats.test_ttest_ind(g1, g2, return_as="latex")
+
+Available Tests
+---------------
+
+**Parametric**
+
+- ``test_ttest_1samp(data, popmean)`` -- One-sample t-test
+- ``test_ttest_ind(g1, g2)`` -- Independent two-sample t-test
+- ``test_ttest_rel(g1, g2)`` -- Paired t-test
+- ``test_anova(*groups)`` -- One-way ANOVA
+- ``test_anova_2way(data, factor1, factor2)`` -- Two-way ANOVA
+- ``test_anova_rm(data, groups)`` -- Repeated measures ANOVA
+
+**Non-parametric**
+
+- ``test_mannwhitneyu(g1, g2)`` -- Mann-Whitney U test
+- ``test_wilcoxon(g1, g2)`` -- Wilcoxon signed-rank test
+- ``test_kruskal(*groups)`` -- Kruskal-Wallis H test
+- ``test_friedman(*groups)`` -- Friedman test
+- ``test_brunner_munzel(g1, g2)`` -- Brunner-Munzel test
+
+**Correlation**
+
+- ``test_pearson(x, y)`` -- Pearson correlation
+- ``test_spearman(x, y)`` -- Spearman rank correlation
+- ``test_kendall(x, y)`` -- Kendall tau correlation
+- ``test_theilsen(x, y)`` -- Theil-Sen robust regression
+
+**Categorical**
+
+- ``test_chi2(observed)`` -- Chi-squared test
+- ``test_fisher(table)`` -- Fisher's exact test
+- ``test_mcnemar(table)`` -- McNemar test
+- ``test_cochran_q(*groups)`` -- Cochran's Q test
+
+**Normality**
+
+- ``test_shapiro(data)`` -- Shapiro-Wilk test
+- ``test_ks_1samp(data)`` -- One-sample Kolmogorov-Smirnov test
+- ``test_ks_2samp(x, y)`` -- Two-sample Kolmogorov-Smirnov test
+- ``test_normality(*samples)`` -- Multi-sample normality check
+
+Seaborn-Style Data Parameter
+----------------------------
+
+All two-sample and one-sample tests accept an optional ``data`` parameter
+for DataFrame/CSV column resolution (like seaborn):
+
+.. code-block:: python
+
+   import pandas as pd
+
+   df = pd.read_csv("experiment.csv")
+
+   # Two-sample: column names as x/y
+   result = stx.stats.test_ttest_ind(x="before", y="after", data=df)
+
+   # One-sample: column name as x
+   result = stx.stats.test_shapiro(x="scores", data=df)
+
+   # Multi-group: value + group columns
+   result = stx.stats.test_anova(data=df, value_col="score", group_col="treatment")
+
+   # Also works with CSV path
+   result = stx.stats.test_ttest_ind(x="col1", y="col2", data="data.csv")
+
+Test Recommendation
+-------------------
+
+Not sure which test to use? Let SciTeX recommend:
+
+.. code-block:: python
+
+    recommendations = stx.stats.recommend_tests(
+        n_groups=2,
+        sample_sizes=[30, 35],
+        outcome_type="continuous",
+        paired=False,
+    )
+
+Output Formats
+--------------
+
+Every test supports ``return_as`` parameter:
+
+- ``"dict"`` (default) -- Returns plain dict with all results
+- ``"dataframe"`` -- Returns pandas DataFrame
+
+Descriptive Statistics
+----------------------
+
+.. code-block:: python
+
+    stx.stats.describe(data)                    # mean, std, median, IQR, etc.
+    stx.stats.effect_sizes.cohens_d(g1, g2)     # Cohen's d
+    stx.stats.test_normality(g1, g2)            # Multi-sample normality
+    stx.stats.p_to_stars(0.003)                 # "**"
+
+Multiple Comparison Correction
+------------------------------
+
+.. code-block:: python
+
+    corrected = stx.stats.correct_pvalues(
+        [0.01, 0.03, 0.05, 0.001],
+        method="fdr_bh",
+    )
+
+Post-hoc Tests
+--------------
+
+.. code-block:: python
+
+    stx.stats.posthoc_test(
+        [g1, g2, g3],
+        group_names=["Control", "Treatment A", "Treatment B"],
+        method="tukey",
+    )
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.stats` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/str.rst.txt b/src/scitex/_sphinx_html/_sources/modules/str.rst.txt
new file mode 100644
index 000000000..1702d22b5
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/str.rst.txt
@@ -0,0 +1,4 @@
+str Module (``stx.str``)
+========================
+
+See :doc:`/api/scitex.str` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/template.rst.txt b/src/scitex/_sphinx_html/_sources/modules/template.rst.txt
new file mode 100644
index 000000000..f69f76a14
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/template.rst.txt
@@ -0,0 +1,85 @@
+Template Module (``stx.template``)
+====================================
+
+Project scaffolding and code snippet templates for quick starts.
+
+Project Templates
+-----------------
+
+.. code-block:: bash
+
+   # Clone a project template
+   scitex template clone research my_project
+   scitex template clone pip_project my_package
+   scitex template clone paper my_paper
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 80
+
+   * - Template
+     - Description
+   * - ``research``
+     - Full scientific workflow (scripts, data, docs, config)
+   * - ``research_minimal``
+     - Essential modules only
+   * - ``pip_project``
+     - Distributable Python package for PyPI
+   * - ``singularity``
+     - Reproducible containerized environment
+   * - ``paper_directory``
+     - Academic paper with LaTeX/BibTeX structure
+
+Git Strategies
+--------------
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 80
+
+   * - Strategy
+     - Behavior
+   * - ``child`` (default)
+     - Fresh git repo, isolated from template
+   * - ``parent``
+     - Use parent repo if available
+   * - ``origin``
+     - Preserve template's git history
+   * - ``None``
+     - No git initialization
+
+Code Templates
+--------------
+
+.. code-block:: bash
+
+   # List available code templates
+   scitex template code list
+
+   # Get a template
+   scitex template code session           # Full @stx.session script
+   scitex template code session-minimal   # Lightweight session
+   scitex template code session-plot      # Figure-focused session
+   scitex template code session-stats     # Statistics-focused session
+   scitex template code io                # I/O operations
+   scitex template code plt               # Plotting patterns
+   scitex template code stats             # Statistical analysis
+   scitex template code scholar           # Literature management
+
+Python API
+----------
+
+.. code-block:: python
+
+   from scitex.template import clone_template, get_code_template
+
+   # Clone project
+   clone_template("research", "my_experiment", git_strategy="child")
+
+   # Get code snippet
+   code = get_code_template("session", filepath="analyze.py")
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.template` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/tex.rst.txt b/src/scitex/_sphinx_html/_sources/modules/tex.rst.txt
new file mode 100644
index 000000000..47e28c849
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/tex.rst.txt
@@ -0,0 +1,4 @@
+tex Module (``stx.tex``)
+========================
+
+See :doc:`/api/scitex.tex` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/torch.rst.txt b/src/scitex/_sphinx_html/_sources/modules/torch.rst.txt
new file mode 100644
index 000000000..fbcb78586
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/torch.rst.txt
@@ -0,0 +1,4 @@
+torch Module (``stx.torch``)
+============================
+
+See :doc:`/api/scitex.torch` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/tunnel.rst.txt b/src/scitex/_sphinx_html/_sources/modules/tunnel.rst.txt
new file mode 100644
index 000000000..7cf5a4dc6
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/tunnel.rst.txt
@@ -0,0 +1,4 @@
+tunnel Module (``stx.tunnel``)
+==============================
+
+See :doc:`/api/scitex.tunnel` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/types.rst.txt b/src/scitex/_sphinx_html/_sources/modules/types.rst.txt
new file mode 100644
index 000000000..79a96c66c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/types.rst.txt
@@ -0,0 +1,4 @@
+types Module (``stx.types``)
+============================
+
+See :doc:`/api/scitex.types` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/ui.rst.txt b/src/scitex/_sphinx_html/_sources/modules/ui.rst.txt
new file mode 100644
index 000000000..127ad15f8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/ui.rst.txt
@@ -0,0 +1,4 @@
+ui Module (``stx.ui``)
+======================
+
+See :doc:`/api/scitex.ui` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/utils.rst.txt b/src/scitex/_sphinx_html/_sources/modules/utils.rst.txt
new file mode 100644
index 000000000..270e2757f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/utils.rst.txt
@@ -0,0 +1,4 @@
+utils Module (``stx.utils``)
+============================
+
+See :doc:`/api/scitex.utils` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/web.rst.txt b/src/scitex/_sphinx_html/_sources/modules/web.rst.txt
new file mode 100644
index 000000000..cb407ca28
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/web.rst.txt
@@ -0,0 +1,4 @@
+web Module (``stx.web``)
+========================
+
+See :doc:`/api/scitex.web` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/modules/writer.rst.txt b/src/scitex/_sphinx_html/_sources/modules/writer.rst.txt
new file mode 100644
index 000000000..4f24d75a2
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/modules/writer.rst.txt
@@ -0,0 +1,164 @@
+Writer Module (``stx.writer``)
+==============================
+
+LaTeX manuscript compilation, figure/table management, bibliography
+handling, and IMRAD writing guidelines.
+
+.. note::
+
+   ``stx.writer`` wraps the standalone
+   `scitex-writer <https://github.com/ywatanabe1989/scitex-writer>`_ package.
+   Install with: ``pip install scitex-writer``.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   from scitex.writer import Writer
+   from pathlib import Path
+
+   writer = Writer(Path("my_paper"))
+
+   # Compile manuscript → PDF
+   result = writer.compile_manuscript()
+   if result.success:
+       print(f"PDF: {result.output_pdf}")
+
+   # Compile supplementary materials
+   result = writer.compile_supplementary()
+
+   # Compile revision with change tracking
+   result = writer.compile_revision(track_changes=True)
+
+CLI Usage
+---------
+
+.. code-block:: bash
+
+   # Compile
+   scitex writer compile manuscript ./my-paper
+   scitex writer compile supplementary ./my-paper
+   scitex writer compile revision ./my-paper --track-changes
+
+   # Bibliography
+   scitex writer bib list ./my-paper
+   scitex writer bib add ./my-paper "@article{...}"
+
+   # Tables and figures
+   scitex writer tables add ./my-paper data.csv
+   scitex writer figures list ./my-paper
+
+   # Writing guidelines
+   scitex writer guidelines get abstract
+
+Project Structure
+-----------------
+
+A writer project follows this layout:
+
+.. code-block:: text
+
+   my_paper/
+   +-- 00_shared/
+   |   +-- bibliography.bib
+   |   +-- figures/
+   |   +-- tables/
+   +-- 01_manuscript/
+   |   +-- main.tex
+   |   +-- sections/
+   +-- 02_supplementary/
+   |   +-- main.tex
+   +-- 03_revision/
+       +-- main.tex
+
+Create a new project:
+
+.. code-block:: bash
+
+   scitex template clone paper my_paper
+
+Key Classes
+-----------
+
+- ``Writer`` -- Main entry point for compilation and project management
+- ``CompilationResult`` -- Compilation outcome (success, output path, logs)
+- ``ManuscriptTree`` -- Document tree for the main manuscript
+- ``SupplementaryTree`` -- Document tree for supplementary materials
+- ``RevisionTree`` -- Document tree for revision responses
+
+Document Management
+-------------------
+
+**Figures:**
+
+.. code-block:: python
+
+   # Add figure (copies image + creates caption file)
+   writer.add_figure("fig1", "plot.png", caption="Results")
+
+   # List figures
+   writer.list_figures()
+
+   # Convert between formats
+   writer.convert_figure("figure.pdf", "figure.png", dpi=300)
+
+**Tables:**
+
+.. code-block:: python
+
+   # Add table from CSV
+   writer.add_table("tab1", csv_content, caption="Demographics")
+
+   # CSV ↔ LaTeX conversion
+   writer.csv_to_latex("data.csv", "table.tex")
+   writer.latex_to_csv("table.tex", "data.csv")
+
+**Bibliography:**
+
+.. code-block:: python
+
+   # Add BibTeX entry
+   writer.add_bibentry('@article{key, title={...}, ...}')
+
+   # Merge multiple .bib files
+   writer.merge_bibfiles(output_file="bibliography.bib")
+
+Writing Guidelines
+------------------
+
+IMRAD guidelines for each manuscript section:
+
+.. code-block:: bash
+
+   scitex writer guidelines list
+   scitex writer guidelines get introduction
+
+.. code-block:: python
+
+   from scitex.writer import guidelines
+
+   # Get guideline for a section
+   guide = guidelines.get("methods")
+
+   # Build editing prompt: guideline + draft
+   prompt = guidelines.build("discussion", draft_text)
+
+Compilation Options
+-------------------
+
+.. code-block:: python
+
+   result = writer.compile_manuscript(
+       timeout=300,        # Max compilation time (seconds)
+       no_figs=False,      # Exclude figures
+       no_tables=False,    # Exclude tables
+       draft=False,        # Draft mode (fast, lower quality)
+       dark_mode=False,    # Dark color scheme
+       quiet=False,        # Suppress output
+   )
+
+API Reference
+-------------
+
+See :doc:`/api/scitex.writer` for the auto-generated Python API.
diff --git a/src/scitex/_sphinx_html/_sources/quickstart.rst.txt b/src/scitex/_sphinx_html/_sources/quickstart.rst.txt
new file mode 100644
index 000000000..5f94fba36
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/quickstart.rst.txt
@@ -0,0 +1,231 @@
+Quick Start
+===========
+
+Three Interfaces
+----------------
+
+SciTeX exposes the same capabilities through three interfaces:
+Python API, CLI commands, and MCP tools for AI agents.
+
+Python API
+^^^^^^^^^^
+
+``@stx.session`` -- Reproducible Experiment Tracking
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(filename="demo.jpg"):
+       fig, ax = stx.plt.subplots()
+       ax.plot_line(t, signal)
+       ax.set_xyt("Time (s)", "Amplitude", "Title")
+       stx.io.save(fig, filename)
+       return 0
+
+Output:
+
+.. code-block:: text
+
+   script_out/FINISHED_SUCCESS/2025-01-08_12-30-00_AbC1/
+   |-- demo.jpg                    # Figure with embedded metadata
+   |-- demo.csv                    # Auto-exported plot data
+   |-- CONFIGS/CONFIG.yaml         # Reproducible parameters
+   +-- logs/{stdout,stderr}.log    # Execution logs
+
+``stx.io`` -- Universal File I/O (30+ formats)
+
+.. code-block:: python
+
+   stx.io.save(df, "output.csv")
+   stx.io.save(fig, "output.jpg")
+   df = stx.io.load("output.csv")
+
+``stx.stats`` -- Publication-Ready Statistics (23 tests)
+
+.. code-block:: python
+
+   result = stx.stats.test_ttest_ind(group1, group2, return_as="dataframe")
+   # Includes: p-value, effect size, CI, normality check, power
+
+``stx.plt`` -- Publication-Ready Figures
+
+.. code-block:: python
+
+   fig, ax = stx.plt.subplots()
+   ax.plot_line(x, y, label="signal")
+   ax.set_xyt("Time (s)", "Amplitude", "Sine Wave")
+   stx.io.save(fig, "plot.png")
+   # Creates: plot.png + plot.csv + plot.yaml (recipe for reproduction)
+
+``stx.scholar`` -- Literature Management
+
+.. code-block:: python
+
+   # Enrich BibTeX with abstracts, DOIs, citation counts
+   stx.scholar.enrich_bibtex("refs.bib", add_abstracts=True)
+
+CLI Commands
+^^^^^^^^^^^^
+
+.. code-block:: bash
+
+   scitex --help-recursive              # Show all commands
+   scitex scholar fetch "10.1038/..."   # Download paper by DOI
+   scitex scholar bibtex refs.bib       # Enrich BibTeX
+   scitex stats recommend               # Suggest statistical tests
+   scitex audio speak "Done"            # Text-to-speech
+   scitex capture snap                  # Screenshot
+
+MCP Tools (120+ tools for AI agents)
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Turn AI agents into autonomous scientific researchers.
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 10 70
+
+   * - Category
+     - Tools
+     - Description
+   * - writer
+     - 28
+     - LaTeX manuscript compilation
+   * - scholar
+     - 23
+     - PDF download, metadata enrichment
+   * - capture
+     - 12
+     - Screen monitoring and capture
+   * - introspect
+     - 12
+     - Python code introspection
+   * - audio
+     - 10
+     - Text-to-speech, audio playback
+   * - stats
+     - 10
+     - Automated statistical testing
+   * - plt
+     - 9
+     - Matplotlib figure creation
+   * - diagram
+     - 9
+     - Mermaid and Graphviz diagrams
+   * - dataset
+     - 8
+     - Neuroimaging/physiology datasets
+   * - social
+     - 7
+     - Social media posting
+   * - canvas
+     - 7
+     - Figure composition
+   * - template
+     - 6
+     - Project scaffolding
+   * - verify
+     - 6
+     - Reproducibility verification
+   * - dev
+     - 6
+     - Version checking
+   * - ui
+     - 5
+     - Notifications
+   * - linter
+     - 3
+     - Code pattern checking
+
+**Claude Code Setup** — add ``.mcp.json`` to your project root. Use ``SCITEX_ENV_SRC``
+to load all configuration from a ``.src`` file — this keeps ``.mcp.json`` static
+across environments:
+
+.. code-block:: json
+
+   {
+     "mcpServers": {
+       "scitex": {
+         "command": "scitex",
+         "args": ["mcp", "start"],
+         "env": {
+           "SCITEX_ENV_SRC": "${SCITEX_ENV_SRC}"
+         }
+       }
+     }
+   }
+
+Switch environments via your shell profile:
+
+.. code-block:: bash
+
+   # Local machine
+   export SCITEX_ENV_SRC=~/.scitex/scitex/local.src
+
+   # Remote server
+   export SCITEX_ENV_SRC=~/.scitex/scitex/remote.src
+
+Generate a template ``.src`` file:
+
+.. code-block:: bash
+
+   scitex env-template -o ~/.scitex/scitex/local.src
+
+Or install globally:
+
+.. code-block:: bash
+
+   scitex mcp install
+
+Complete Example
+----------------
+
+A typical research script combining session, I/O, plotting, and statistics:
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(
+       n=200,
+       noise=0.1,
+       CONFIG=stx.INJECTED,
+       plt=stx.INJECTED,
+       logger=stx.INJECTED,
+   ):
+       """Analyze noisy sine wave."""
+       import numpy as np
+
+       # Generate data
+       x = np.linspace(0, 4 * np.pi, n)
+       y_clean = np.sin(x)
+       y_noisy = y_clean + np.random.normal(0, noise, n)
+
+       # Save raw data
+       stx.io.save({"x": x, "y_clean": y_clean, "y_noisy": y_noisy}, "data.npz")
+
+       # Visualize
+       fig, ax = plt.subplots()
+       ax.plot_scatter(x, y_noisy, alpha=0.3, label="Noisy")
+       ax.plot_line(x, y_clean, color="red", label="True")
+       ax.set_xyt("x", "y", f"Sine Wave (noise={noise})")
+       stx.io.save(fig, "sine.png")
+
+       # Correlation between noisy and clean
+       result = stx.stats.test_pearson(y_clean, y_noisy)
+       logger.info(f"Pearson r={result['effect_size']:.3f}, p={result['pvalue']:.1e}")
+
+       # Save summary
+       stx.io.save({"r": result["effect_size"], "p": result["pvalue"]}, "stats.yaml")
+
+       return 0
+
+Next Steps
+----------
+
+- :doc:`core_concepts` -- Architecture and design principles
+- :doc:`modules/index` -- Detailed module documentation
+- :doc:`gallery` -- Plot examples
diff --git a/src/scitex/_sphinx_html/_sources/source/api/ai.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/ai.rst.txt
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@@ -0,0 +1,82 @@
+AI Module (``stx.ai``)
+======================
+
+Machine learning utilities for training, classification, and metrics
+with PyTorch and scikit-learn.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Training utilities
+   from scitex.ai import LearningCurveLogger, EarlyStopping
+
+   logger = LearningCurveLogger()
+   stopper = EarlyStopping(patience=10, direction="minimize")
+
+   for epoch in range(100):
+       # ... training loop ...
+       logger({"loss": loss, "acc": acc}, step="Training")
+       if stopper(val_loss, {"model": model_path}, epoch):
+           break
+
+   logger.plot_learning_curves(spath="curves.png")
+
+   # Classification
+   from scitex.ai import ClassificationReporter, Classifier
+
+   clf = Classifier()("SVC")
+   reporter = ClassificationReporter(output_dir="./results")
+   reporter.calculate_metrics(y_true, y_pred, y_proba)
+   reporter.save_summary()
+
+Training
+--------
+
+- ``LearningCurveLogger`` -- Track and visualize training/validation/test metrics across epochs
+- ``EarlyStopping`` -- Monitor validation metrics and stop when improvement plateaus
+
+Classification
+--------------
+
+- ``ClassificationReporter`` -- Unified reporter for single/multi-task classification (balanced accuracy, MCC, ROC-AUC, confusion matrices)
+- ``Classifier`` -- Factory for scikit-learn classifiers (SVC, KNN, Logistic Regression, AdaBoost, ...)
+- ``CrossValidationExperiment`` -- Cross-validation framework
+
+Metrics
+-------
+
+Standardized ``calc_*`` functions:
+
+- ``calc_bacc`` -- Balanced accuracy
+- ``calc_mcc`` -- Matthews Correlation Coefficient
+- ``calc_conf_mat`` -- Confusion matrix
+- ``calc_roc_auc`` -- ROC-AUC score
+- ``calc_pre_rec_auc`` -- Precision-Recall AUC
+- ``calc_feature_importance`` -- Feature importance scores
+
+Visualization
+-------------
+
+- ``plot_learning_curve`` -- Training/validation curves
+- ``stx_conf_mat`` -- Confusion matrix heatmap
+- ``plot_roc_curve`` -- ROC curve
+- ``plot_pre_rec_curve`` -- Precision-Recall curve
+- ``plot_feature_importance`` -- Feature importance bar plots
+
+Other
+-----
+
+- ``MultiTaskLoss`` -- Multi-task learning loss weighting
+- ``get_optimizer`` / ``set_optimizer`` -- Optimizer management
+- ``GenAI`` -- Generative AI wrapper (lazy-loaded)
+- Clustering: ``pca``, ``umap``
+
+API Reference
+-------------
+
+.. automodule:: scitex.ai
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/app.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/app.rst.txt
new file mode 100644
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@@ -0,0 +1,101 @@
+App Module (``stx.app``)
+========================
+
+Runtime SDK for SciTeX applications. Provides a unified interface for
+file storage, configuration, and lifecycle management that works
+identically in local and cloud environments.
+
+.. note::
+
+   ``stx.app`` delegates to the standalone
+   `scitex-app <https://github.com/ywatanabe1989/scitex-app>`_ package.
+   Install with: ``pip install scitex-app``.
+
+Overview
+--------
+
+SciTeX applications are self-contained scientific tools that can run
+locally or on the SciTeX cloud platform. The ``stx.app`` module
+provides the runtime SDK that each application uses to interact with
+its environment.
+
+Quick Start
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Get current application info
+   info = stx.app.get_info()
+
+   # Access application preferences
+   prefs = stx.app.get_prefs()
+
+   # Check dependencies
+   stx.app.check_deps()
+
+Key Features
+------------
+
+**Unified File Storage**
+   Read and write files through a single API that abstracts local
+   filesystem and cloud storage.
+
+   .. code-block:: python
+
+      # These work identically locally and in the cloud
+      stx.app.write_file("results/output.csv", data)
+      content = stx.app.read_file("config/settings.yaml")
+
+**Configuration Management**
+   Application preferences are stored in a standard location and
+   accessible via dot-notation.
+
+   .. code-block:: python
+
+      prefs = stx.app.get_prefs()
+      print(prefs.theme)
+      print(prefs.default_format)
+
+      stx.app.set_prefs(theme="dark", default_format="pdf")
+
+**Application Lifecycle**
+   Query and manage the running application.
+
+   .. code-block:: python
+
+      info = stx.app.get_info()
+      print(info.name)
+      print(info.version)
+
+      current = stx.app.get_current()    # Currently active app
+
+**Dependency Checking**
+   Verify that all required packages are available.
+
+   .. code-block:: python
+
+      missing = stx.app.check_deps()
+      if missing:
+          print(f"Missing: {missing}")
+
+Creating an Application
+-----------------------
+
+Scaffold a new SciTeX application from a template:
+
+.. code-block:: bash
+
+   scitex template clone app my_tool
+
+This creates a project with bridge-init configuration, MountPoint
+definitions, and EventBus integration pre-configured.
+
+API Reference
+-------------
+
+.. automodule:: scitex.app
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/audio.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/audio.rst.txt
new file mode 100644
index 000000000..bc0a211a2
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+++ b/src/scitex/_sphinx_html/_sources/source/api/audio.rst.txt
@@ -0,0 +1,78 @@
+Audio Module (``stx.audio``)
+============================
+
+Text-to-speech synthesis and audio file playback. Supports multiple
+TTS backends with automatic fallback.
+
+Quick Start
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Text-to-speech
+   stx.audio.speak("Analysis complete. 42 significant results found.")
+
+   # Play an audio file
+   stx.audio.play("notification.wav")
+
+Key Functions
+-------------
+
+``speak(text, backend=None, **kwargs)``
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Convert text to speech and play it through the default audio output.
+If no backend is specified, the first available backend is used.
+
+.. code-block:: python
+
+   # Use default backend
+   stx.audio.speak("Hello from SciTeX")
+
+   # Specify a backend
+   stx.audio.speak("Hello", backend="espeak")
+
+``play(path)``
+^^^^^^^^^^^^^^
+
+Play an audio file (WAV, MP3, etc.).
+
+.. code-block:: python
+
+   stx.audio.play("alert.wav")
+   stx.audio.play("recording.mp3")
+
+``list_backends()``
+^^^^^^^^^^^^^^^^^^^
+
+List available TTS backends on the current system.
+
+.. code-block:: python
+
+   backends = stx.audio.list_backends()
+   # e.g., ['espeak', 'festival', 'pyttsx3']
+
+Use Cases
+---------
+
+Audible notifications are useful for long-running experiments:
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(CONFIG=stx.INJECTED):
+       result = train_model()  # Takes hours
+       stx.audio.speak(f"Training done. Accuracy: {result.accuracy:.1%}")
+       return 0
+
+API Reference
+-------------
+
+.. automodule:: scitex.audio
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/audit.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/audit.rst.txt
new file mode 100644
index 000000000..e7f92881e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/audit.rst.txt
@@ -0,0 +1,7 @@
+audit Module (``stx.audit``)
+============================
+
+.. automodule:: scitex.audit
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/benchmark.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/benchmark.rst.txt
new file mode 100644
index 000000000..014b80120
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/benchmark.rst.txt
@@ -0,0 +1,7 @@
+benchmark Module (``stx.benchmark``)
+====================================
+
+.. automodule:: scitex.benchmark
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/bridge.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/bridge.rst.txt
new file mode 100644
index 000000000..8028c570b
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/bridge.rst.txt
@@ -0,0 +1,7 @@
+bridge Module (``stx.bridge``)
+==============================
+
+.. automodule:: scitex.bridge
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/browser.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/browser.rst.txt
new file mode 100644
index 000000000..c91604cc8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/browser.rst.txt
@@ -0,0 +1,7 @@
+browser Module (``stx.browser``)
+================================
+
+.. automodule:: scitex.browser
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/canvas.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/canvas.rst.txt
new file mode 100644
index 000000000..210c63590
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/canvas.rst.txt
@@ -0,0 +1,7 @@
+canvas Module (``stx.canvas``)
+==============================
+
+.. automodule:: scitex.canvas
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/capture.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/capture.rst.txt
new file mode 100644
index 000000000..68c87a179
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/capture.rst.txt
@@ -0,0 +1,81 @@
+Capture Module (``stx.capture``)
+=================================
+
+Screenshot capture and screen monitoring utilities. Useful for
+documenting GUI states, recording experiment progress, and
+automated visual testing.
+
+Quick Start
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Take a screenshot
+   img = stx.capture.snap()
+
+   # Save it
+   stx.io.save(img, "screenshot.png")
+
+Key Functions
+-------------
+
+``snap(region=None)``
+^^^^^^^^^^^^^^^^^^^^^
+
+Capture a screenshot of the entire screen or a specific region.
+
+.. code-block:: python
+
+   # Full screen
+   img = stx.capture.snap()
+
+   # Specific region (x, y, width, height)
+   img = stx.capture.snap(region=(0, 0, 800, 600))
+
+``monitor(interval=1.0, duration=None, output_dir=".")``
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Capture screenshots at regular intervals. Useful for monitoring
+long-running GUI processes.
+
+.. code-block:: python
+
+   # Capture every 5 seconds for 1 minute
+   stx.capture.monitor(interval=5.0, duration=60, output_dir="./captures")
+
+``crop(image, region)``
+^^^^^^^^^^^^^^^^^^^^^^^
+
+Crop a captured image to a specific region.
+
+.. code-block:: python
+
+   img = stx.capture.snap()
+   cropped = stx.capture.crop(img, region=(100, 100, 400, 300))
+   stx.io.save(cropped, "cropped.png")
+
+Use Cases
+---------
+
+Documenting experiment results displayed in a GUI:
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(CONFIG=stx.INJECTED):
+       run_experiment_gui()
+       img = stx.capture.snap()
+       stx.io.save(img, "final_state.png")
+       return 0
+
+API Reference
+-------------
+
+.. automodule:: scitex.capture
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/clew.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/clew.rst.txt
new file mode 100644
index 000000000..017427e08
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/clew.rst.txt
@@ -0,0 +1,94 @@
+Clew Module (``stx.clew``)
+==========================
+
+Hash-based provenance tracking for reproducible science. Clew (Ariadne's
+thread) records file hashes during ``@stx.session`` runs and traces
+dependency chains back to source.
+
+How It Works
+------------
+
+1. ``@stx.session`` starts a tracking session
+2. ``stx.io.load()`` records input file hashes
+3. ``stx.io.save()`` records output file hashes
+4. Session close computes a combined hash of all inputs/outputs
+5. Later, ``stx.clew`` can verify nothing has changed
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Automatic -- just use @stx.session + stx.io
+   @stx.session
+   def main():
+       data = stx.io.load("input.csv")      # Tracked as input
+       result = process(data)
+       stx.io.save(result, "output.png")     # Tracked as output
+       return 0
+
+   # Verify later
+   stx.clew.status()                         # Like git status
+   stx.clew.run("session_id")                # Verify by hash
+   stx.clew.chain("output.png")              # Trace to source
+
+CLI Commands
+------------
+
+.. code-block:: bash
+
+   scitex clew status                  # Show changed files
+   scitex clew list                    # List all tracked runs
+   scitex clew run <session_id>        # Verify a specific run
+   scitex clew chain <file>            # Trace dependency chain
+   scitex clew stats                   # Database statistics
+
+Verification Levels
+-------------------
+
+- **CACHE** -- Hash comparison only (fast). Checks if files match stored hashes.
+- **RERUN** -- Re-execute scripts and compare outputs (thorough). Catches logic errors.
+
+.. code-block:: python
+
+   # Fast: hash comparison
+   result = stx.clew.run("session_id")
+
+   # Thorough: re-execute and compare
+   result = stx.clew.run("session_id", from_scratch=True)
+
+Dependency Chains
+-----------------
+
+Clew traces ``parent_session`` links to build a DAG from final output
+back to original source:
+
+.. code-block:: python
+
+   chain = stx.clew.chain("final_figure.png")
+   # Shows: source.py → intermediate.csv → analysis.py → final_figure.png
+
+   # Visualize as Mermaid DAG
+   stx.clew.mermaid("session_id")
+
+Verification Statuses
+---------------------
+
+- ``VERIFIED`` -- Files match expected hashes
+- ``MISMATCH`` -- Files differ from stored hashes
+- ``MISSING`` -- Files no longer exist
+- ``UNKNOWN`` -- No prior tracking data
+
+Key Functions
+-------------
+
+- ``status()`` -- Show changed items (like ``git status``)
+- ``run(session_id)`` -- Verify a specific run
+- ``chain(target_file)`` -- Trace dependency chain
+- ``list_runs(limit, status)`` -- List tracked runs
+- ``stats()`` -- Database statistics
+
+API Reference
+-------------
+
+.. automodule:: scitex.clew
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/cli.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/cli.rst.txt
new file mode 100644
index 000000000..c6054e8fd
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/cli.rst.txt
@@ -0,0 +1,7 @@
+cli Module (``stx.cli``)
+========================
+
+.. automodule:: scitex.cli
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/cloud.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/cloud.rst.txt
new file mode 100644
index 000000000..6c265efe4
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/cloud.rst.txt
@@ -0,0 +1,123 @@
+Cloud Module (``stx.cloud``)
+============================
+
+Cloud platform integration for the SciTeX ecosystem. Provides
+programmatic access to remote execution, file storage, job management,
+and repository operations.
+
+Overview
+--------
+
+The cloud module connects local SciTeX workflows to the cloud platform,
+enabling remote computation, shared storage, and collaborative
+features. All operations are available through Python API, CLI, and
+MCP tools.
+
+Quick Start
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Check cloud connection
+   status = stx.cloud.status()
+
+   # Submit a job
+   job_id = stx.cloud.jobs.submit(script="train.py", resources={"gpu": 1})
+
+   # Check job status
+   stx.cloud.jobs.status(job_id)
+
+Key Features
+------------
+
+Job Management
+^^^^^^^^^^^^^^
+
+Submit, monitor, and retrieve results from remote compute jobs.
+
+.. code-block:: python
+
+   # Submit a job
+   job_id = stx.cloud.jobs.submit(
+       script="train.py",
+       resources={"gpu": 1, "memory": "16G"},
+   )
+
+   # Poll status
+   status = stx.cloud.jobs.status(job_id)
+
+   # List all jobs
+   stx.cloud.jobs.list()
+
+   # Cancel a running job
+   stx.cloud.jobs.cancel(job_id)
+
+File Storage
+^^^^^^^^^^^^
+
+Upload and download files to/from cloud storage.
+
+.. code-block:: python
+
+   # Upload a file
+   stx.cloud.files.upload("local_data.h5", remote="data/experiment.h5")
+
+   # Download a file
+   stx.cloud.files.download("data/experiment.h5", local="./downloaded.h5")
+
+   # List remote files
+   stx.cloud.files.list("data/")
+
+Data API
+^^^^^^^^
+
+CRUD operations on structured data stored in the cloud.
+
+.. code-block:: python
+
+   # Create a record
+   stx.cloud.data.create(collection="results", data={"accuracy": 0.95})
+
+   # Search records
+   results = stx.cloud.data.search(collection="results", query={"accuracy": {"$gt": 0.9}})
+
+   # List collections
+   stx.cloud.data.list()
+
+Repository Operations
+^^^^^^^^^^^^^^^^^^^^^
+
+Manage git repositories through the cloud API.
+
+.. code-block:: python
+
+   stx.cloud.repo.list()
+   stx.cloud.repo.status("my-project")
+   stx.cloud.repo.push("my-project")
+
+CLI Access
+----------
+
+.. code-block:: bash
+
+   # Job management
+   scitex cloud jobs submit train.py --gpu 1
+   scitex cloud jobs status JOB_ID
+   scitex cloud jobs list
+
+   # File operations
+   scitex cloud files upload data.h5
+   scitex cloud files list
+
+   # Status
+   scitex cloud status
+
+API Reference
+-------------
+
+.. automodule:: scitex.cloud
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/compat.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/compat.rst.txt
new file mode 100644
index 000000000..7438ae6ca
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/compat.rst.txt
@@ -0,0 +1,7 @@
+compat Module (``stx.compat``)
+==============================
+
+.. automodule:: scitex.compat
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/config.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/config.rst.txt
new file mode 100644
index 000000000..11a770d0b
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/config.rst.txt
@@ -0,0 +1,88 @@
+Config Module (``stx.config``)
+===============================
+
+YAML-based configuration with priority resolution and path management.
+
+Priority Resolution
+-------------------
+
+All config values follow the same precedence:
+
+.. code-block:: text
+
+   direct argument > config/YAML > environment variable > default
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Get global config (reads ~/.scitex/config.yaml)
+   config = stx.config.get_config()
+
+   # Resolve with precedence
+   log_level = config.resolve("logging.level", default="INFO")
+   # Checks: direct → YAML → SCITEX_LOGGING_LEVEL env → "INFO"
+
+   # Access nested values
+   config.get_nested("scholar", "crossref_email")
+
+   # Path management
+   paths = stx.config.get_paths()
+   paths.scholar        # ~/.scitex/scholar
+   paths.cache          # ~/.scitex/cache
+
+YAML Configuration
+------------------
+
+.. code-block:: yaml
+
+   # ~/.scitex/config.yaml (or ./config/*.yaml for projects)
+   logging:
+     level: INFO
+
+   scholar:
+     crossref_email: ${CROSSREF_EMAIL:-user@example.com}
+
+Environment variable substitution with ``${VAR:-default}`` syntax is
+supported in YAML files.
+
+Key Classes
+-----------
+
+- ``ScitexConfig`` -- YAML-based config with env var substitution and precedence resolution
+- ``PriorityConfig`` -- Dict-based config resolver for programmatic use
+- ``ScitexPaths`` -- Centralized path manager (all paths derive from ``~/.scitex/``)
+- ``EnvVar`` -- Environment variable definition dataclass
+
+Path Management
+---------------
+
+``ScitexPaths`` manages all SciTeX directories:
+
+.. code-block:: python
+
+   paths = stx.config.get_paths()
+   paths.base       # ~/.scitex (SCITEX_DIR)
+   paths.logs       # ~/.scitex/logs
+   paths.cache      # ~/.scitex/cache
+   paths.scholar    # ~/.scitex/scholar
+   paths.rng        # ~/.scitex/rng
+   paths.capture    # ~/.scitex/capture
+
+Utility Functions
+-----------------
+
+- ``get_config(path)`` -- Get singleton ScitexConfig instance
+- ``get_paths(base_dir)`` -- Get singleton ScitexPaths instance
+- ``load_yaml(path)`` -- Load YAML with env var substitution
+- ``load_dotenv(path)`` -- Load ``.env`` file
+- ``get_scitex_dir()`` -- Get SCITEX_DIR with precedence
+
+API Reference
+-------------
+
+.. automodule:: scitex.config
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/container.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/container.rst.txt
new file mode 100644
index 000000000..6ac42573b
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/container.rst.txt
@@ -0,0 +1,7 @@
+container Module (``stx.container``)
+====================================
+
+.. automodule:: scitex.container
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/context.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/context.rst.txt
new file mode 100644
index 000000000..7a7f5b8ff
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/context.rst.txt
@@ -0,0 +1,7 @@
+context Module (``stx.context``)
+================================
+
+.. automodule:: scitex.context
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/cv.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/cv.rst.txt
new file mode 100644
index 000000000..e4b53ed96
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/cv.rst.txt
@@ -0,0 +1,7 @@
+cv Module (``stx.cv``)
+======================
+
+.. automodule:: scitex.cv
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/dataset.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/dataset.rst.txt
new file mode 100644
index 000000000..3ceca7e6d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/dataset.rst.txt
@@ -0,0 +1,125 @@
+Dataset Module (``stx.dataset``)
+=================================
+
+Unified access to public scientific datasets from major neuroscience
+and biomedical repositories. Search, browse, and fetch datasets
+without learning each repository's API.
+
+Supported Sources
+-----------------
+
+.. list-table::
+   :header-rows: 1
+   :widths: 25 75
+
+   * - Source
+     - Description
+   * - `DANDI <https://dandiarchive.org>`_
+     - Neurophysiology data (NWB format) -- electrophysiology, calcium imaging
+   * - `OpenNeuro <https://openneuro.org>`_
+     - Brain imaging data (BIDS format) -- fMRI, EEG, MEG, PET
+   * - `PhysioNet <https://physionet.org>`_
+     - Physiological signal data -- ECG, EEG, clinical waveforms
+
+Quick Start
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Search across all sources
+   results = stx.dataset.search("epilepsy EEG")
+
+   # Fetch a specific dataset
+   data = stx.dataset.fetch("dandi", dandiset_id="000003")
+
+   # List available sources
+   sources = stx.dataset.list_sources()
+   # ['dandi', 'openneuro', 'physionet']
+
+Key Functions
+-------------
+
+``search(query, source=None)``
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Search for datasets across one or all supported repositories.
+
+.. code-block:: python
+
+   # Search all sources
+   results = stx.dataset.search("motor imagery BCI")
+
+   # Search a specific source
+   results = stx.dataset.search("sleep staging", source="physionet")
+
+   for r in results:
+       print(f"{r.source}: {r.title} ({r.id})")
+
+``fetch(source, **kwargs)``
+^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Download or stream a dataset from a specific source.
+
+.. code-block:: python
+
+   # Fetch from DANDI
+   data = stx.dataset.fetch("dandi", dandiset_id="000003")
+
+   # Fetch from OpenNeuro
+   data = stx.dataset.fetch("openneuro", dataset_id="ds000117")
+
+   # Fetch from PhysioNet
+   data = stx.dataset.fetch("physionet", database="mimic-iv", version="2.0")
+
+``list_sources()``
+^^^^^^^^^^^^^^^^^^
+
+List all available dataset sources and their status.
+
+.. code-block:: python
+
+   sources = stx.dataset.list_sources()
+   # ['dandi', 'openneuro', 'physionet']
+
+Local Database
+--------------
+
+Build a local search index for faster repeated queries:
+
+.. code-block:: python
+
+   # Build/update the local database
+   stx.dataset.db_build(sources=["dandi", "openneuro"])
+
+   # Search the local index (fast, offline)
+   results = stx.dataset.db_search("resting state fMRI")
+
+   # Get database statistics
+   stx.dataset.db_stats()
+
+CLI Access
+----------
+
+.. code-block:: bash
+
+   # Search datasets
+   scitex dataset search "epilepsy EEG"
+
+   # Fetch a dataset
+   scitex dataset fetch dandi --dandiset-id 000003
+
+   # List sources
+   scitex dataset list-sources
+
+   # Build local database
+   scitex dataset db-build
+
+API Reference
+-------------
+
+.. automodule:: scitex.dataset
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/datetime.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/datetime.rst.txt
new file mode 100644
index 000000000..78541bb81
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/datetime.rst.txt
@@ -0,0 +1,7 @@
+datetime Module (``stx.datetime``)
+==================================
+
+.. automodule:: scitex.datetime
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/db.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/db.rst.txt
new file mode 100644
index 000000000..5945aa66d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/db.rst.txt
@@ -0,0 +1,7 @@
+db Module (``stx.db``)
+======================
+
+.. automodule:: scitex.db
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/decorators.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/decorators.rst.txt
new file mode 100644
index 000000000..b1a5f2fd0
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/decorators.rst.txt
@@ -0,0 +1,80 @@
+Decorators Module (``stx.decorators``)
+=======================================
+
+Function decorators for type conversion, batching, caching, and more.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   from scitex.decorators import torch_fn, batch_fn, cache_disk, timeout
+
+   @torch_fn
+   def process(x):
+       """Auto-converts inputs to torch tensors, outputs back."""
+       return x * 2
+
+   @batch_fn
+   def predict(data, batch_size=32):
+       """Process data in batches with progress bar."""
+       return model(data)
+
+   @cache_disk
+   def expensive_computation(params):
+       """Results cached to disk for reuse."""
+       return heavy_compute(params)
+
+   @timeout(seconds=30)
+   def risky_call():
+       """Raises TimeoutError if exceeds 30s."""
+       return external_api()
+
+Type Conversion
+---------------
+
+Auto-convert between data frameworks:
+
+- ``@torch_fn`` -- Inputs to PyTorch tensors, outputs back to original type
+- ``@numpy_fn`` -- Inputs to NumPy arrays
+- ``@pandas_fn`` -- Inputs to pandas objects
+- ``@xarray_fn`` -- Inputs to xarray objects
+
+Batch Processing
+----------------
+
+- ``@batch_fn`` -- Split input into batches with tqdm progress
+- ``@batch_numpy_fn`` -- NumPy conversion + batching
+- ``@batch_torch_fn`` -- PyTorch conversion + batching
+- ``@batch_pandas_fn`` -- Pandas conversion + batching
+
+Caching
+-------
+
+- ``@cache_mem`` -- In-memory function result caching
+- ``@cache_disk`` -- Persistent disk-based caching
+- ``@cache_disk_async`` -- Async disk caching
+
+Utilities
+---------
+
+- ``@deprecated(reason, forward_to)`` -- Mark functions as deprecated
+- ``@not_implemented`` -- Mark as not yet implemented
+- ``@timeout(seconds)`` -- Enforce execution time limits
+- ``@preserve_doc`` -- Preserve docstrings when wrapping
+
+Auto-Ordering
+-------------
+
+.. code-block:: python
+
+   from scitex.decorators import enable_auto_order
+
+   enable_auto_order()
+   # Now decorators are applied in optimal order regardless of code order
+
+API Reference
+-------------
+
+.. automodule:: scitex.decorators
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/dev.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/dev.rst.txt
new file mode 100644
index 000000000..63e389f2f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/dev.rst.txt
@@ -0,0 +1,163 @@
+Dev Module (``stx.dev``)
+========================
+
+Development tools and ecosystem management for the SciTeX package family.
+
+.. note::
+
+   ``stx.dev`` delegates to the standalone
+   `scitex-dev <https://github.com/ywatanabe1989/scitex-dev>`_ package.
+   Install with: ``pip install scitex-dev``.
+
+Overview
+--------
+
+The dev module provides utilities for maintaining the SciTeX ecosystem of
+packages, building documentation, managing versions, and creating
+MCP/CLI wrappers for scientific tools. It is primarily used by package
+maintainers and contributors rather than end users.
+
+Ecosystem Management
+--------------------
+
+The SciTeX ecosystem comprises 14+ packages. ``stx.dev`` provides a
+unified registry and coordination tools.
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # List all ecosystem packages
+   stx.dev.list_versions()
+
+   # Check version consistency across the ecosystem
+   stx.dev.check_versions()
+
+   # Synchronize local clones
+   stx.dev.ecosystem_sync()
+
+   # Commit across multiple packages
+   stx.dev.ecosystem_commit("fix: update shared constants")
+
+.. list-table:: Ecosystem Packages
+   :header-rows: 1
+   :widths: 30 70
+
+   * - Package
+     - Purpose
+   * - ``scitex``
+     - Hub package (re-exports all modules)
+   * - ``scitex-io``
+     - File I/O for 30+ formats
+   * - ``scitex-stats``
+     - Statistical testing with auto-reporting
+   * - ``scitex-linter``
+     - AST-based convention checker
+   * - ``scitex-clew``
+     - Claim-evidence-workflow pipeline
+   * - ``figrecipe``
+     - Publication-quality plotting
+   * - ``scitex-dev``
+     - Development and ecosystem tools
+   * - ``scitex-notification``
+     - Multi-backend notifications
+   * - ``scitex-app``
+     - Runtime SDK for SciTeX applications
+
+LLM-friendly Types
+-------------------
+
+``stx.dev`` provides structured return types designed for consumption
+by both humans and AI agents:
+
+.. code-block:: python
+
+   from scitex.dev import Result, ErrorCode
+
+   # Wrap function results for consistent handling
+   result = Result(ok=True, data={"accuracy": 0.95})
+   result = Result(ok=False, error=ErrorCode.NOT_FOUND, message="File missing")
+
+   # Decorator to add return_as= parameter
+   @stx.dev.supports_return_as
+   def analyze(data):
+       return {"mean": data.mean()}
+
+   analyze(data, return_as="json")    # JSON string
+   analyze(data, return_as="dict")    # Python dict
+
+MCP and CLI Wrappers
+--------------------
+
+Convert Python functions into MCP tools or CLI commands:
+
+.. code-block:: python
+
+   from scitex.dev import wrap_as_mcp, wrap_as_cli
+
+   def my_tool(path: str, threshold: float = 0.5) -> dict:
+       """Analyze a data file."""
+       ...
+
+   # Register as MCP tool (for AI agent access)
+   mcp_tool = wrap_as_mcp(my_tool)
+
+   # Register as CLI command (for terminal access)
+   cli_cmd = wrap_as_cli(my_tool)
+
+Documentation
+-------------
+
+Build and search unified documentation across the ecosystem:
+
+.. code-block:: python
+
+   # Build Sphinx docs for a package
+   stx.dev.build_docs("scitex-io")
+
+   # Get docstring for any public function
+   stx.dev.get_docs("stx.io.save")
+
+   # Full-text search across all packages
+   results = stx.dev.search("load_configs")
+
+Hot Reload
+----------
+
+Reload modules during interactive development:
+
+.. code-block:: python
+
+   stx.dev.reload("scitex.io")    # Re-import scitex.io from disk
+
+HPC Testing
+-----------
+
+Submit test suites to HPC clusters and poll results:
+
+.. code-block:: bash
+
+   scitex dev test-hpc --package scitex-io
+   scitex dev test-hpc-poll --job-id 12345
+
+Bulk Rename
+-----------
+
+Rename symbols across an entire codebase safely:
+
+.. code-block:: python
+
+   stx.dev.bulk_rename(
+       root="./src",
+       old="old_function_name",
+       new="new_function_name",
+       dry_run=True,    # Preview changes first
+   )
+
+API Reference
+-------------
+
+.. automodule:: scitex.dev
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/diagram.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/diagram.rst.txt
new file mode 100644
index 000000000..7e3a9f997
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/diagram.rst.txt
@@ -0,0 +1,99 @@
+Diagram Module (``stx.diagram``)
+=================================
+
+Paper-optimized diagram generation with Mermaid and Graphviz backends.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   from scitex.diagram import Diagram
+
+   # Create from Python
+   d = Diagram(type="workflow", title="Analysis Pipeline")
+   d.add_node("load", "Load Data", shape="stadium")
+   d.add_node("proc", "Process", shape="rounded", emphasis="primary")
+   d.add_node("save", "Save Results", shape="stadium", emphasis="success")
+   d.add_edge("load", "proc")
+   d.add_edge("proc", "save")
+
+   # Export
+   d.to_mermaid("pipeline.mmd")
+   d.to_graphviz("pipeline.dot")
+
+   # Or from YAML specification
+   d = Diagram.from_yaml("pipeline.diagram.yaml")
+
+YAML Specification
+------------------
+
+.. code-block:: yaml
+
+   type: workflow
+   title: SciTeX Analysis Pipeline
+
+   paper:
+     column: single          # single or double
+     mode: publication       # draft or publication
+     reading_direction: left_to_right
+
+   layout:
+     groups:
+       Input: [load, preprocess]
+       Analysis: [analyze, test]
+
+   nodes:
+     - id: load
+       label: Load Data
+       shape: stadium
+     - id: analyze
+       label: Statistical Test
+       shape: rounded
+       emphasis: primary
+
+   edges:
+     - from: load
+       to: analyze
+
+Node Shapes
+------------
+
+``box``, ``rounded``, ``stadium``, ``diamond``, ``circle``, ``codeblock``
+
+Node Emphasis
+-------------
+
+- ``normal`` -- Default (dark)
+- ``primary`` -- Key nodes (blue)
+- ``success`` -- Positive outcomes (green)
+- ``warning`` -- Issues (red)
+- ``muted`` -- Secondary (gray)
+
+Diagram Types
+-------------
+
+- ``workflow`` -- Left-to-right sequential processes
+- ``decision`` -- Top-to-bottom decision trees
+- ``pipeline`` -- Data pipeline stages
+- ``hierarchy`` -- Tree structures
+- ``comparison`` -- Side-by-side comparison
+
+Paper Modes
+-----------
+
+- **draft** -- Full arrows, medium spacing, all edges visible
+- **publication** -- Tight spacing, return edges invisible, optimized for column width
+
+Backends
+--------
+
+- **Mermaid** (``.mmd``) -- Web/markdown rendering
+- **Graphviz DOT** (``.dot``) -- Tighter layouts, render with ``dot -Tpng``
+- **YAML** (``.diagram.yaml``) -- Semantic spec, human/LLM-readable
+
+API Reference
+-------------
+
+.. automodule:: scitex.diagram
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/dict.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/dict.rst.txt
new file mode 100644
index 000000000..7157aba95
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/dict.rst.txt
@@ -0,0 +1,7 @@
+dict Module (``stx.dict``)
+==========================
+
+.. automodule:: scitex.dict
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/dsp.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/dsp.rst.txt
new file mode 100644
index 000000000..4e16f6f2d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/dsp.rst.txt
@@ -0,0 +1,75 @@
+DSP Module (``stx.dsp``)
+========================
+
+Digital signal processing tools for filtering, spectral analysis,
+and time-frequency decomposition.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+    import numpy as np
+
+    # Generate test signal
+    fs = 1000  # Hz
+    t = np.arange(0, 1, 1/fs)
+    signal = np.sin(2 * np.pi * 10 * t) + 0.5 * np.sin(2 * np.pi * 50 * t)
+
+    # Filtering
+    filtered = stx.dsp.filt.bandpass(signal, fs=fs, low=5, high=30)
+    low_pass = stx.dsp.filt.lowpass(signal, fs=fs, cutoff=20)
+    high_pass = stx.dsp.filt.highpass(signal, fs=fs, cutoff=5)
+
+    # Power spectral density
+    freqs, psd = stx.dsp.psd(signal, fs=fs)
+
+    # Band powers
+    powers = stx.dsp.band_powers(signal, fs=fs, bands={
+        "delta": (1, 4),
+        "theta": (4, 8),
+        "alpha": (8, 13),
+        "beta": (13, 30),
+    })
+
+    # Hilbert transform (analytic signal)
+    analytic = stx.dsp.hilbert(signal)
+    amplitude = np.abs(analytic)
+    phase = np.angle(analytic)
+
+    # Wavelet decomposition
+    coeffs = stx.dsp.wavelet(signal, fs=fs, freqs=np.arange(1, 50))
+
+Available Functions
+-------------------
+
+**Filtering** (``stx.dsp.filt``)
+
+- ``bandpass(signal, fs, low, high)``
+- ``lowpass(signal, fs, cutoff)``
+- ``highpass(signal, fs, cutoff)``
+- ``notch(signal, fs, freq)``
+
+**Spectral Analysis**
+
+- ``psd(signal, fs)`` -- Power spectral density
+- ``band_powers(signal, fs, bands)`` -- Power in frequency bands
+- ``wavelet(signal, fs, freqs)`` -- Continuous wavelet transform
+
+**Time-Frequency**
+
+- ``hilbert(signal)`` -- Analytic signal via Hilbert transform
+- ``pac(signal, fs)`` -- Phase-amplitude coupling
+
+**Utilities**
+
+- ``demo_sig(fs, duration)`` -- Generate demo signals for testing
+- ``crop(signal, start, end, fs)`` -- Crop signal to time range
+- ``detect_ripples(signal, fs)`` -- Detect sharp-wave ripples
+
+API Reference
+-------------
+
+.. automodule:: scitex.dsp
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/etc.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/etc.rst.txt
new file mode 100644
index 000000000..b10d3a1f4
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/etc.rst.txt
@@ -0,0 +1,7 @@
+etc Module (``stx.etc``)
+========================
+
+.. automodule:: scitex.etc
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/events.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/events.rst.txt
new file mode 100644
index 000000000..2039cfecd
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/events.rst.txt
@@ -0,0 +1,7 @@
+events Module (``stx.events``)
+==============================
+
+.. automodule:: scitex.events
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/gen.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/gen.rst.txt
new file mode 100644
index 000000000..4a982c9fc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/gen.rst.txt
@@ -0,0 +1,38 @@
+Gen Module (``stx.gen``)
+========================
+
+General utilities for path management, shell commands, and system operations.
+
+.. note::
+
+   Session management has moved to ``@stx.session`` (see :doc:`/core_concepts`).
+   The ``scitex.gen.start()`` / ``scitex.gen.close()`` pattern is deprecated.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+
+    # Timestamped output directories
+    path = stx.gen.mk_spath("./results")
+    # → ./results/20260213_143022/
+
+    # Run shell commands
+    stx.gen.run("ls -la")
+
+    # Clipboard operations
+    stx.gen.copy("text to clipboard")
+    text = stx.gen.paste()
+
+    # String to valid path
+    stx.gen.title2path("My Experiment #1")
+    # → "my_experiment_1"
+
+API Reference
+-------------
+
+.. automodule:: scitex.gen
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/gists.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/gists.rst.txt
new file mode 100644
index 000000000..b77c7eaf9
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/gists.rst.txt
@@ -0,0 +1,7 @@
+gists Module (``stx.gists``)
+============================
+
+.. automodule:: scitex.gists
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/git.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/git.rst.txt
new file mode 100644
index 000000000..fcec156e3
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/git.rst.txt
@@ -0,0 +1,7 @@
+git Module (``stx.git``)
+========================
+
+.. automodule:: scitex.git
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/index.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/index.rst.txt
new file mode 100644
index 000000000..50f15de62
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/index.rst.txt
@@ -0,0 +1,118 @@
+API Reference
+=============
+
+SciTeX is organized into focused modules.
+All modules are accessible via ``import scitex as stx`` followed by ``stx.<module>``.
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Core
+
+   session
+   io
+   config
+   logging
+   repro
+   clew
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Science & Analysis
+
+   stats
+   plt
+   dsp
+   diagram
+   canvas
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Literature & Writing
+
+   scholar
+   writer
+   notebook
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Machine Learning
+
+   ai
+   nn
+   torch
+   cv
+   benchmark
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Data & I/O
+
+   pd
+   db
+   dataset
+   schema
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Infrastructure
+
+   app
+   cloud
+   container
+   tunnel
+   cli
+   browser
+   capture
+   audio
+   notification
+   social
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Development
+
+   dev
+   template
+   linter
+   introspect
+   audit
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Utilities
+
+   gen
+   decorators
+   str
+   dict
+   path
+   os
+   sh
+   git
+   parallel
+   linalg
+   datetime
+   types
+   rng
+   context
+   resource
+   utils
+   etc
+   web
+   msword
+   tex
+   bridge
+   compat
+   module
+   gists
+   media
+   security
+   ui
+   usage
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Other
+
+   events
+   project
diff --git a/src/scitex/_sphinx_html/_sources/source/api/introspect.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/introspect.rst.txt
new file mode 100644
index 000000000..180c1dafb
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/introspect.rst.txt
@@ -0,0 +1,71 @@
+Introspect Module (``stx.introspect``)
+=======================================
+
+IPython-like code inspection for exploring Python packages.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Function signature (like IPython's func?)
+   stx.introspect.q("scitex.stats.test_ttest_ind")
+   # → name, signature, parameters, return type
+
+   # Full source code (like IPython's func??)
+   stx.introspect.qq("scitex.stats.test_ttest_ind")
+   # → complete source with line numbers
+
+   # List module members (like enhanced dir())
+   stx.introspect.dir("scitex.plt", filter="public", kind="functions")
+
+   # Recursive API tree
+   df = stx.introspect.list_api("scitex", max_depth=2)
+
+IPython-Style Shortcuts
+-----------------------
+
+- ``q(dotted_path)`` -- Signature and parameters (like ``func?``)
+- ``qq(dotted_path)`` -- Full source code (like ``func??``)
+- ``dir(dotted_path, filter, kind)`` -- List members with filtering
+
+Filters: ``"public"``, ``"private"``, ``"dunder"``, ``"all"``
+
+Kinds: ``"functions"``, ``"classes"``, ``"data"``, ``"modules"``
+
+Documentation
+-------------
+
+- ``get_docstring(path, format)`` -- Extract docstrings (``"raw"``, ``"parsed"``, ``"summary"``)
+- ``get_exports(path)`` -- Get ``__all__`` exports
+- ``find_examples(path)`` -- Find usage examples in tests/examples
+
+Type Analysis
+-------------
+
+- ``get_type_hints_detailed(path)`` -- Full type annotation analysis
+- ``get_class_hierarchy(path)`` -- Inheritance tree (MRO + subclasses)
+- ``get_class_annotations(path)`` -- Class variable annotations
+
+Code Analysis
+-------------
+
+- ``get_imports(path, categorize)`` -- All imports (AST-based, grouped by stdlib/third-party/local)
+- ``get_dependencies(path, recursive)`` -- Module dependency tree
+- ``get_call_graph(path, max_depth)`` -- Function call graph (with timeout protection)
+
+API Tree
+--------
+
+.. code-block:: python
+
+   # Generate full module tree as DataFrame
+   df = stx.introspect.list_api("scitex", max_depth=3, docstring=True)
+
+API Reference
+-------------
+
+.. automodule:: scitex.introspect
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/io.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/io.rst.txt
new file mode 100644
index 000000000..9489168df
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/io.rst.txt
@@ -0,0 +1,181 @@
+I/O Module (``stx.io``)
+========================
+
+Unified file I/O for 30+ scientific data formats. A single ``save()``
+and ``load()`` interface handles format detection by file extension,
+so you never need to remember which library reads ``.npy`` vs ``.h5``
+vs ``.parquet``.
+
+.. note::
+
+   Core format handlers are provided by the standalone
+   `scitex-io <https://github.com/ywatanabe1989/scitex-io>`_ package.
+   ``stx.io`` adds integration with ``stx.session`` (provenance tracking),
+   ``stx.clew`` (claim verification), and automatic CSV export for figures.
+
+Supported Formats
+-----------------
+
+.. list-table::
+   :header-rows: 1
+   :widths: 25 75
+
+   * - Category
+     - Extensions
+   * - **Tabular**
+     - ``.csv``, ``.tsv``, ``.xlsx``, ``.xls``, ``.parquet``, ``.feather``
+   * - **Array**
+     - ``.npy``, ``.npz``, ``.mat``, ``.zarr``, ``.h5`` / ``.hdf5``
+   * - **Config**
+     - ``.yaml``, ``.yml``, ``.json``, ``.toml``, ``.ini``, ``.conf``
+   * - **Figure**
+     - ``.png``, ``.jpg``, ``.jpeg``, ``.svg``, ``.pdf``, ``.tiff``
+   * - **Text**
+     - ``.txt``, ``.log``, ``.md``, ``.rst``
+   * - **Audio**
+     - ``.wav``, ``.mp3``, ``.flac``
+   * - **Serialized**
+     - ``.pkl``, ``.pickle``, ``.joblib``
+   * - **Bibliography**
+     - ``.bib``
+
+Quick Start
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+   import pandas as pd
+   import numpy as np
+
+   # --- Save and load a DataFrame ---
+   df = pd.DataFrame({"x": [1, 2, 3], "y": [4, 5, 6]})
+   stx.io.save(df, "results.csv")
+   df_loaded = stx.io.load("results.csv")
+
+   # --- Save and load a NumPy array ---
+   arr = np.random.randn(100, 3)
+   stx.io.save(arr, "data.npy")
+   arr_loaded = stx.io.load("data.npy")
+
+   # --- Save a figure (PNG + CSV data export) ---
+   fig, ax = stx.plt.subplots()
+   ax.stx_line([1, 2, 3, 4, 5], id="my_data")
+   stx.io.save(fig, "plot.png")
+   # Creates: plot.png, plot.csv, plot.yaml
+
+Key Functions
+-------------
+
+``save(obj, path, **kwargs)``
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Save any supported object to a file. The format is determined by the
+file extension. Built-in features beyond simple save:
+
+- **Auto directory creation** -- no ``os.makedirs()`` needed
+- **Path resolution** -- relative paths resolve to ``<script_name>_out/<path>``
+- **Symlinks** -- ``symlink_from_cwd=True`` for short access paths
+- **Save logging** -- prints file path and size on success
+- **Clew hash tracking** -- file hashes recorded automatically for verification
+- **Figure CSV export** -- saves plot data alongside image files
+
+.. code-block:: python
+
+   # Format detected from extension
+   stx.io.save(fig, "figure.pdf")       # Also exports CSV + YAML recipe
+   stx.io.save(df, "output.parquet")    # DataFrame
+   stx.io.save({"lr": 0.001}, "config.yaml")  # Dict
+   stx.io.save(arr, "weights.npy")      # NumPy array
+
+   # Symlink for convenient access
+   stx.io.save(df, "results/data.csv", symlink_from_cwd=True)
+
+``load(path)``
+^^^^^^^^^^^^^^
+
+Load data from a file. Returns the appropriate Python object
+(DataFrame, ndarray, dict, etc.).
+
+.. code-block:: python
+
+   df = stx.io.load("results.csv")          # -> pd.DataFrame
+   arr = stx.io.load("weights.npy")         # -> np.ndarray
+   cfg = stx.io.load("config.yaml")         # -> dict
+   data = stx.io.load("experiment.h5")      # -> dict of arrays
+
+``load_configs(pattern="./config/*.yaml")``
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Load and merge multiple YAML configuration files into a single
+``DotDict``. Used internally by ``@stx.session`` to build the
+``CONFIG`` object.
+
+.. code-block:: python
+
+   CONF = stx.io.load_configs("./config/*.yaml")
+   print(CONF.MODEL.hidden_size)
+
+``list_formats()``
+^^^^^^^^^^^^^^^^^^
+
+List all registered format handlers.
+
+.. code-block:: python
+
+   fmts = stx.io.list_formats()
+   # ['.csv', '.h5', '.hdf5', '.json', '.mat', '.npy', ...]
+
+HDF5 and Zarr Exploration
+-------------------------
+
+For hierarchical formats, use the explorer interface:
+
+.. code-block:: python
+
+   # HDF5
+   stx.io.explore_h5("data.h5")            # Print tree structure
+   stx.io.has_h5_key("data.h5", "/group/dataset")
+
+   # Zarr
+   stx.io.explore_zarr("data.zarr")
+   stx.io.has_zarr_key("data.zarr", "/group/array")
+
+Format Registry
+---------------
+
+Register custom loaders and savers for new file extensions:
+
+.. code-block:: python
+
+   @stx.io.register_loader(".custom")
+   def load_custom(path, **kwargs):
+       with open(path) as f:
+           return parse_custom(f.read())
+
+   @stx.io.register_saver(".custom")
+   def save_custom(obj, path, **kwargs):
+       with open(path, "w") as f:
+           f.write(serialize_custom(obj))
+
+Caching
+-------
+
+Built-in load caching for repeated reads of the same file:
+
+.. code-block:: python
+
+   stx.io.configure_cache(maxsize=128)
+   data = stx.io.load("big_file.h5")    # First call: reads from disk
+   data = stx.io.load("big_file.h5")    # Second call: from cache
+
+   stx.io.get_cache_info()               # Cache hit/miss statistics
+   stx.io.clear_load_cache()             # Flush the cache
+
+API Reference
+-------------
+
+.. automodule:: scitex.io
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/linalg.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/linalg.rst.txt
new file mode 100644
index 000000000..2f7ce9a85
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/linalg.rst.txt
@@ -0,0 +1,7 @@
+linalg Module (``stx.linalg``)
+==============================
+
+.. automodule:: scitex.linalg
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/linter.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/linter.rst.txt
new file mode 100644
index 000000000..bd9072ba0
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/linter.rst.txt
@@ -0,0 +1,191 @@
+Linter Module (``stx.linter``)
+===============================
+
+AST-based Python linter enforcing SciTeX conventions for reproducible
+scientific code. Uses a plugin architecture where each downstream
+package contributes its own rules.
+
+.. note::
+
+   ``stx.linter`` wraps the standalone
+   `scitex-linter <https://github.com/ywatanabe1989/scitex-linter>`_ package.
+   Install with: ``pip install scitex-linter``.
+
+Quick Start
+-----------
+
+.. code-block:: bash
+
+   # Check a file
+   scitex linter check my_script.py
+
+   # Check with specific severity
+   scitex linter check my_script.py --severity warning
+
+   # List all rules
+   scitex linter list-rules
+
+   # Filter by category
+   scitex linter list-rules --category session
+
+.. code-block:: python
+
+   from scitex_linter import check_file, list_rules
+
+   # Check a file
+   results = check_file("my_script.py")
+
+   # List available rules
+   rules = list_rules()
+
+Rule Categories
+---------------
+
+47+ rules across 7 categories, contributed by multiple packages:
+
+.. list-table::
+   :header-rows: 1
+   :widths: 10 20 15 55
+
+   * - Prefix
+     - Category
+     - Source
+     - Examples
+   * - ``STX-S``
+     - **Session**
+     - scitex-linter
+     - Missing ``@stx.session``, missing ``if __name__`` guard, missing return,
+       ``load_configs()`` result not UPPER_CASE, magic numbers in module scope
+   * - ``STX-I``
+     - **Import**
+     - scitex-linter
+     - Using ``import mngs`` instead of ``import scitex``, bare ``import numpy``,
+       wildcard imports
+   * - ``STX-IO``
+     - **I/O**
+     - scitex-io
+     - Using ``open()`` instead of ``stx.io``, hardcoded paths,
+       using ``pd.read_csv`` directly
+   * - ``STX-P``
+     - **Plotting**
+     - figrecipe
+     - Using ``plt.show()`` instead of ``stx.io.save``, missing ``set_xyt``,
+       using raw matplotlib calls
+   * - ``STX-ST``
+     - **Statistics**
+     - scitex-stats
+     - Using ``scipy.stats`` directly instead of ``stx.stats``,
+       missing multiple comparison correction
+   * - ``STX-PA``
+     - **Path**
+     - scitex-linter
+     - Hardcoded absolute paths, missing ``stx.gen.mk_spath``
+   * - ``STX-FM``
+     - **Format**
+     - figrecipe
+     - Non-snake_case names, magic numbers, missing docstrings
+
+Severity Levels
+---------------
+
+- **error** -- Must fix (breaks reproducibility or correctness)
+- **warning** -- Should fix (best practice violations)
+- **info** -- Suggestions for improvement
+
+Plugin Architecture
+-------------------
+
+Each downstream package defines its own linter rules via the
+``scitex_linter.plugins`` entry point. The linter discovers and
+aggregates rules automatically at runtime.
+
+.. code-block:: toml
+
+   # In a downstream package's pyproject.toml
+   [project.entry-points."scitex_linter.plugins"]
+   my_package = "my_package._linter_plugin:get_plugin"
+
+The plugin function returns a dictionary of rules, call patterns,
+axes hints, and AST checker classes:
+
+.. code-block:: python
+
+   def get_plugin():
+       from ._rules import MyRule001, MyRule002
+       return {
+           "rules": [MyRule001, MyRule002],
+           "call_rules": {"my_func": "Use stx.my_func() instead"},
+           "axes_hints": {},
+           "checkers": [],
+       }
+
+Interfaces
+----------
+
+The linter is available through four interfaces:
+
+**CLI (via scitex):**
+
+.. code-block:: bash
+
+   scitex linter check script.py
+   scitex linter list-rules --category io --severity warning
+
+**Standalone CLI:**
+
+.. code-block:: bash
+
+   scitex-linter check script.py
+
+**Python API:**
+
+.. code-block:: python
+
+   from scitex_linter import check_file, check_source, list_rules
+
+   results = check_file("script.py")
+   results = check_source("import numpy as np\n...")
+   rules = list_rules(category="io", severity="warning")
+
+**Flake8 Plugin:**
+
+.. code-block:: bash
+
+   flake8 --select=STX script.py
+
+**MCP Tools (for AI agents):**
+
+.. code-block:: python
+
+   linter_check(path="script.py", severity="warning")
+   linter_list_rules(category="session")
+   linter_check_source(source="...", filepath="<stdin>")
+
+Configuration
+-------------
+
+Configure via ``pyproject.toml``:
+
+.. code-block:: toml
+
+   [tool.scitex-linter]
+   severity = "warning"
+   ignore = ["STX-S002", "STX-FM001"]
+
+Example Output
+--------------
+
+.. code-block:: text
+
+   my_script.py:3:1: STX-I001 [warning] Use 'import scitex as stx' instead of 'import mngs'
+   my_script.py:15:5: STX-IO003 [error] Use 'stx.io.load()' instead of 'pd.read_csv()'
+   my_script.py:22:1: STX-S001 [warning] Missing '@stx.session' decorator on main()
+
+   3 issues found (1 error, 2 warnings)
+
+API Reference
+-------------
+
+.. automodule:: scitex.linter
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/logging.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/logging.rst.txt
new file mode 100644
index 000000000..f8a5512db
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/logging.rst.txt
@@ -0,0 +1,108 @@
+Logging Module (``stx.logging``)
+=================================
+
+Unified logging with file/console output, custom warnings, exception
+hierarchy, and stream redirection.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+   from scitex import logging
+
+   # Get a logger
+   logger = logging.getLogger(__name__)
+   logger.info("Processing data")
+   logger.success("Analysis complete")   # Custom level (31)
+   logger.fail("Model diverged")         # Custom level (35)
+
+   # Configure globally
+   logging.configure(level="DEBUG", log_file="./run.log")
+   logging.set_level("WARNING")
+
+   # Temporary file logging
+   with logging.log_to_file("analysis.log"):
+       logger.info("This goes to both console and file")
+
+   # Warnings
+   logging.warn("Large dataset", category=logging.PerformanceWarning)
+   logging.warn_deprecated("old_func", "new_func", version="3.0")
+   logging.filterwarnings("ignore", category=logging.UnitWarning)
+
+Log Levels
+----------
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 15 65
+
+   * - Level
+     - Value
+     - Description
+   * - ``DEBUG``
+     - 10
+     - Detailed diagnostic information
+   * - ``INFO``
+     - 20
+     - General operational messages
+   * - ``WARNING``
+     - 30
+     - Something unexpected but not fatal
+   * - ``SUCCESS``
+     - 31
+     - Custom: operation completed successfully
+   * - ``FAIL``
+     - 35
+     - Custom: operation failed (non-fatal)
+   * - ``ERROR``
+     - 40
+     - Serious problem
+   * - ``CRITICAL``
+     - 50
+     - Program may not continue
+
+Warning Categories
+------------------
+
+- ``SciTeXWarning`` -- Base warning class
+- ``UnitWarning`` -- SI unit convention issues
+- ``StyleWarning`` -- Formatting issues
+- ``SciTeXDeprecationWarning`` -- Deprecated features
+- ``PerformanceWarning`` -- Performance issues
+- ``DataLossWarning`` -- Potential data loss
+
+Exception Hierarchy
+-------------------
+
+All inherit from ``SciTeXError``:
+
+- **I/O**: ``IOError``, ``FileFormatError``, ``SaveError``, ``LoadError``
+- **Config**: ``ConfigurationError``, ``ConfigFileNotFoundError``, ``ConfigKeyError``
+- **Path**: ``PathError``, ``InvalidPathError``, ``PathNotFoundError``
+- **Data**: ``DataError``, ``ShapeError``, ``DTypeError``
+- **Plotting**: ``PlottingError``, ``FigureNotFoundError``, ``AxisError``
+- **Stats**: ``StatsError``, ``TestError``
+- **Scholar**: ``ScholarError``, ``SearchError``, ``PDFDownloadError``, ``DOIResolutionError``
+- **NN**: ``NNError``, ``ModelError``
+- **Template**: ``TemplateError``, ``TemplateViolationError``
+
+Stream Redirection
+------------------
+
+.. code-block:: python
+
+   from scitex.logging import tee
+   import sys
+
+   # Redirect stdout/stderr to log files
+   sys.stdout, sys.stderr = tee(sys, sdir="./output")
+
+The ``@stx.session`` decorator handles this automatically.
+
+API Reference
+-------------
+
+.. automodule:: scitex.logging
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/media.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/media.rst.txt
new file mode 100644
index 000000000..34e386c28
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/media.rst.txt
@@ -0,0 +1,7 @@
+media Module (``stx.media``)
+============================
+
+.. automodule:: scitex.media
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/module.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/module.rst.txt
new file mode 100644
index 000000000..6ba06a686
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/module.rst.txt
@@ -0,0 +1,7 @@
+module Module (``stx.module``)
+==============================
+
+.. automodule:: scitex.module
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/msword.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/msword.rst.txt
new file mode 100644
index 000000000..a48391fae
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/msword.rst.txt
@@ -0,0 +1,7 @@
+msword Module (``stx.msword``)
+==============================
+
+.. automodule:: scitex.msword
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/nn.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/nn.rst.txt
new file mode 100644
index 000000000..a4f886c7d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/nn.rst.txt
@@ -0,0 +1,80 @@
+NN Module (``stx.nn``)
+======================
+
+PyTorch neural network layers for signal processing and neuroscience
+applications.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+   import torch
+
+   # Bandpass filtering as a differentiable layer
+   bpf = stx.nn.BandPassFilter(
+       bands=[[4, 8], [8, 13], [13, 30]],  # theta, alpha, beta
+       fs=256, seq_len=1024
+   )
+   filtered = bpf(signal)  # (batch, channels, 3, 1024)
+
+   # Power spectral density
+   psd = stx.nn.PSD(sample_rate=256)
+   power, freqs = psd(signal)
+
+   # Phase-amplitude coupling
+   pac = stx.nn.PAC(seq_len=1024, fs=256)
+   coupling = pac(signal)
+
+Signal Processing Layers
+-------------------------
+
+**Filtering** (all differentiable):
+
+- ``BandPassFilter(bands, fs, seq_len)`` -- Multi-band frequency filtering
+- ``BandStopFilter(bands, fs, seq_len)`` -- Reject frequency bands
+- ``LowPassFilter(cutoffs_hz, fs, seq_len)`` -- Anti-aliasing / smoothing
+- ``HighPassFilter(cutoffs_hz, fs, seq_len)`` -- High-frequency emphasis
+- ``GaussianFilter(sigma)`` -- Gaussian kernel smoothing
+- ``DifferentiableBandPassFilter(...)`` -- Learnable bandpass parameters
+
+**Spectral Analysis**:
+
+- ``Spectrogram(sampling_rate, n_fft)`` -- STFT-based magnitude spectrogram
+- ``PSD(sample_rate, prob)`` -- FFT-based power spectral density
+- ``Wavelet(samp_rate, freq_scale)`` -- Continuous wavelet transform
+
+**Phase & Coupling**:
+
+- ``Hilbert(seq_len)`` -- Analytic signal (phase + amplitude)
+- ``ModulationIndex(n_bins)`` -- Phase-amplitude coupling metric
+- ``PAC(seq_len, fs, ...)`` -- Complete PAC analysis pipeline
+
+Channel Manipulation
+--------------------
+
+- ``SwapChannels()`` -- Random channel permutation (training augmentation)
+- ``DropoutChannels(dropout)`` -- Drop entire channels
+- ``ChannelGainChanger(n_chs)`` -- Learnable per-channel scaling
+- ``FreqGainChanger(n_bands, fs)`` -- Learnable per-band scaling
+
+Attention & Shape
+-----------------
+
+- ``SpatialAttention(n_chs_in)`` -- Adaptive channel weighting
+- ``TransposeLayer(axis1, axis2)`` -- Dimension permutation
+- ``AxiswiseDropout(dropout_prob, dim)`` -- Drop entire axis
+
+Architectures
+-------------
+
+- ``ResNet1D(n_chs, n_out, n_blks)`` -- 1D residual network
+- ``BNet`` / ``BNet_Res`` -- Multi-head EEG classifier
+- ``MNet1000`` -- 2D CNN feature extractor
+
+API Reference
+-------------
+
+.. automodule:: scitex.nn
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/notebook.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/notebook.rst.txt
new file mode 100644
index 000000000..b66a0a1c0
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/notebook.rst.txt
@@ -0,0 +1,7 @@
+notebook Module (``stx.notebook``)
+==================================
+
+.. automodule:: scitex.notebook
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/notification.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/notification.rst.txt
new file mode 100644
index 000000000..33d9b0658
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/notification.rst.txt
@@ -0,0 +1,134 @@
+Notification Module (``stx.notification``)
+===============================
+
+Multi-backend notification system for alerting researchers when
+long-running tasks complete, errors occur, or results are ready.
+
+.. note::
+
+   ``stx.notification`` delegates to the standalone
+   `scitex-notification <https://github.com/ywatanabe1989/scitex-notification>`_
+   package. Install with: ``pip install scitex-notification``.
+
+Supported Backends
+------------------
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 80
+
+   * - Backend
+     - Description
+   * - ``desktop``
+     - Native desktop notifications (Linux ``notify-send``, macOS, Windows)
+   * - ``email``
+     - Email via SMTP
+   * - ``slack``
+     - Slack messages via webhook or Bot API
+   * - ``webhook``
+     - Generic HTTP POST to any URL
+
+Quick Start
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Send a notification (uses default backend)
+   stx.notification.send("Training complete! Accuracy: 95.2%")
+
+   # Send to a specific backend
+   stx.notification.send("Job finished", backend="slack")
+
+   # List available backends
+   stx.notification.list_backends()
+
+Key Functions
+-------------
+
+``send(message, backend=None, **kwargs)``
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Send a notification through one or more backends.
+
+.. code-block:: python
+
+   # Simple message
+   stx.notification.send("Experiment finished successfully.")
+
+   # With title
+   stx.notification.send("95.2% accuracy achieved", title="Training Complete")
+
+   # To a specific backend
+   stx.notification.send("Results ready", backend="email")
+
+``config(**kwargs)``
+^^^^^^^^^^^^^^^^^^^^
+
+Configure notification backends. Settings persist across sessions.
+
+.. code-block:: python
+
+   # Configure Slack
+   stx.notification.config(
+       slack_webhook="https://hooks.slack.com/services/...",
+   )
+
+   # Configure email
+   stx.notification.config(
+       email_to="researcher@university.edu",
+       email_from="scitex@lab.org",
+       smtp_host="smtp.university.edu",
+   )
+
+``list_backends()``
+^^^^^^^^^^^^^^^^^^^
+
+List available and configured backends.
+
+.. code-block:: python
+
+   backends = stx.notification.list_backends()
+   # [{'name': 'desktop', 'available': True, 'configured': True},
+   #  {'name': 'slack', 'available': True, 'configured': False}, ...]
+
+Integration with ``@stx.session``
+----------------------------------
+
+Enable automatic notifications when a session completes:
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session(notify=True)
+   def main(CONFIG=stx.INJECTED):
+       """Long-running experiment."""
+       result = train_model()
+       return 0    # Sends "Session FINISHED_SUCCESS" notification
+
+   if __name__ == "__main__":
+       main()
+
+CLI Access
+----------
+
+.. code-block:: bash
+
+   # Send a notification
+   scitex notify send "Job complete"
+
+   # Check backend status
+   scitex notify backends
+
+   # Configure a backend
+   scitex notify config --slack-webhook "https://..."
+
+API Reference
+-------------
+
+.. automodule:: scitex.notification
+   :members:
+   :no-undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/os.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/os.rst.txt
new file mode 100644
index 000000000..be2fda313
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/os.rst.txt
@@ -0,0 +1,7 @@
+os Module (``stx.os``)
+======================
+
+.. automodule:: scitex.os
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/parallel.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/parallel.rst.txt
new file mode 100644
index 000000000..620d8333d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/parallel.rst.txt
@@ -0,0 +1,7 @@
+parallel Module (``stx.parallel``)
+==================================
+
+.. automodule:: scitex.parallel
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/path.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/path.rst.txt
new file mode 100644
index 000000000..672ff6967
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/path.rst.txt
@@ -0,0 +1,7 @@
+path Module (``stx.path``)
+==========================
+
+.. automodule:: scitex.path
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/pd.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/pd.rst.txt
new file mode 100644
index 000000000..9a34275d0
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/pd.rst.txt
@@ -0,0 +1,46 @@
+PD Module (``stx.pd``)
+======================
+
+Pandas DataFrame helper functions for common transformations.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+    import pandas as pd
+
+    df = pd.DataFrame({
+        "subject": ["A", "A", "B", "B"],
+        "condition": ["ctrl", "exp", "ctrl", "exp"],
+        "score": [10, 15, 12, 18],
+    })
+
+    # Find individual (unique) values
+    subjects = stx.pd.find_indi(df, "subject")
+
+    # Convert to long format
+    melted = stx.pd.melt_cols(df, id_vars=["subject"])
+
+    # Merge columns
+    merged = stx.pd.merge_cols(df, cols=["subject", "condition"], sep="_")
+
+    # Force to DataFrame
+    stx.pd.force_df({"a": [1, 2], "b": [3, 4]})
+
+Available Functions
+-------------------
+
+- ``find_indi(df, col)`` -- Find unique individual identifiers
+- ``find_pval(df)`` -- Find p-value columns in a DataFrame
+- ``force_df(data)`` -- Convert any data to a DataFrame
+- ``melt_cols(df, id_vars)`` -- Melt columns to long format
+- ``merge_cols(df, cols, sep)`` -- Merge multiple columns into one
+- ``to_xyz(df, x, y, z)`` -- Reshape to x, y, z pivot format
+
+API Reference
+-------------
+
+.. automodule:: scitex.pd
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/plt.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/plt.rst.txt
new file mode 100644
index 000000000..82b3d0cf0
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/plt.rst.txt
@@ -0,0 +1,243 @@
+scitex.plt
+==========
+
+Figure and Axis Creation
+------------------------
+
+.. autofunction:: scitex.plt.subplots
+
+.. autofunction:: scitex.plt.figure
+
+Gallery
+-------
+
+.. automodule:: scitex.plt.gallery
+   :members:
+   :undoc-members:
+
+Axis Methods
+------------
+
+The following methods are available on ``ax`` objects returned by ``stx.plt.subplots()``.
+
+Line Plots
+~~~~~~~~~~
+
+.. code-block:: python
+
+   fig, ax = stx.plt.subplots()
+
+.. py:method:: ax.stx_line(values_1d, xx=None, track=True, id=None, **kwargs)
+
+   Plot a simple line from 1D array.
+
+   :param values_1d: Y values
+   :param xx: Optional X values
+   :param track: Track data for CSV export
+   :param id: Identifier for tracking
+
+.. py:method:: ax.stx_shaded_line(xs, ys_lower, ys_middle, ys_upper, color=None, label=None, track=True, id=None, **kwargs)
+
+   Plot a line with shaded area between bounds.
+
+   :param xs: X values
+   :param ys_lower: Lower bound Y values
+   :param ys_middle: Middle line Y values
+   :param ys_upper: Upper bound Y values
+
+Statistical Plots
+~~~~~~~~~~~~~~~~~
+
+.. py:method:: ax.stx_mean_std(values_2d, xx=None, sd=1, track=True, id=None, **kwargs)
+
+   Plot mean line with standard deviation shading.
+
+   :param values_2d: 2D array (samples x timepoints)
+   :param xx: Optional X values
+   :param sd: Number of standard deviations for shading
+
+.. py:method:: ax.stx_mean_ci(values_2d, xx=None, perc=95, track=True, id=None, **kwargs)
+
+   Plot mean line with confidence interval shading.
+
+   :param values_2d: 2D array (samples x timepoints)
+   :param xx: Optional X values
+   :param perc: Confidence interval percentage (default: 95)
+
+.. py:method:: ax.stx_median_iqr(values_2d, xx=None, track=True, id=None, **kwargs)
+
+   Plot median line with interquartile range shading.
+
+   :param values_2d: 2D array (samples x timepoints)
+   :param xx: Optional X values
+
+.. py:method:: ax.stx_errorbar(x, y, yerr=None, xerr=None, track=True, id=None, **kwargs)
+
+   Error bar plot with scitex styling.
+
+   :param x: X coordinates
+   :param y: Y coordinates
+   :param yerr: Y error values
+   :param xerr: X error values
+
+Distribution Plots
+~~~~~~~~~~~~~~~~~~
+
+.. py:method:: ax.stx_kde(values_1d, cumulative=False, fill=False, track=True, id=None, **kwargs)
+
+   Plot kernel density estimate.
+
+   :param values_1d: 1D array of values
+   :param cumulative: Plot cumulative distribution
+   :param fill: Fill under curve
+
+.. py:method:: ax.stx_ecdf(values_1d, track=True, id=None, **kwargs)
+
+   Plot empirical cumulative distribution function.
+
+   :param values_1d: 1D array of values
+
+.. py:method:: ax.hist(x, bins=10, range=None, align_bins=True, track=True, id=None, **kwargs)
+
+   Plot histogram with bin alignment support.
+
+   :param x: Input data
+   :param bins: Number of bins or bin edges
+   :param align_bins: Align bins with other histograms on same axis
+
+Categorical Plots
+~~~~~~~~~~~~~~~~~
+
+.. py:method:: ax.stx_box(values_list, colors=None, track=True, id=None, **kwargs)
+
+   Boxplot with scitex styling.
+
+   :param values_list: List of arrays for each box
+   :param colors: Optional colors for boxes
+
+.. py:method:: ax.stx_violin(values_list, x=None, y=None, hue=None, labels=None, colors=None, half=False, track=True, id=None, **kwargs)
+
+   Violin plot with scitex styling.
+
+   :param values_list: List of arrays or DataFrame
+   :param half: Show half violins
+
+Scatter Plots
+~~~~~~~~~~~~~
+
+.. py:method:: ax.stx_scatter(x, y, track=True, id=None, **kwargs)
+
+   Scatter plot with scitex styling.
+
+   :param x: X coordinates
+   :param y: Y coordinates
+
+.. py:method:: ax.stx_scatter_hist(x, y, hist_bins=20, scatter_alpha=0.6, track=True, id=None, **kwargs)
+
+   Scatter plot with marginal histograms.
+
+   :param x: X coordinates
+   :param y: Y coordinates
+   :param hist_bins: Number of histogram bins
+
+Bar Plots
+~~~~~~~~~
+
+.. py:method:: ax.stx_bar(x, height, track=True, id=None, **kwargs)
+
+   Vertical bar plot with scitex styling.
+
+   :param x: X coordinates
+   :param height: Bar heights
+
+.. py:method:: ax.stx_barh(y, width, track=True, id=None, **kwargs)
+
+   Horizontal bar plot with scitex styling.
+
+   :param y: Y coordinates
+   :param width: Bar widths
+
+Heatmaps
+~~~~~~~~
+
+.. py:method:: ax.stx_heatmap(values_2d, x_labels=None, y_labels=None, cmap="viridis", cbar_label="", show_annot=True, track=True, id=None, **kwargs)
+
+   Plot annotated heatmap.
+
+   :param values_2d: 2D array
+   :param x_labels: Column labels
+   :param y_labels: Row labels
+   :param show_annot: Show value annotations
+
+.. py:method:: ax.stx_conf_mat(conf_mat_2d, x_labels=None, y_labels=None, title="Confusion Matrix", track=True, id=None, **kwargs)
+
+   Plot confusion matrix.
+
+   :param conf_mat_2d: 2D confusion matrix array
+   :param x_labels: Predicted class labels
+   :param y_labels: True class labels
+
+.. py:method:: ax.stx_image(arr_2d, track=True, id=None, **kwargs)
+
+   Display 2D array as image.
+
+   :param arr_2d: 2D array
+
+Special Plots
+~~~~~~~~~~~~~
+
+.. py:method:: ax.stx_raster(spike_times_list, time=None, labels=None, colors=None, track=True, id=None, **kwargs)
+
+   Plot spike raster.
+
+   :param spike_times_list: List of spike time arrays per neuron
+   :param time: Optional time array
+
+.. py:method:: ax.stx_fillv(starts_1d, ends_1d, color="red", alpha=0.2, track=True, id=None, **kwargs)
+
+   Fill vertical regions.
+
+   :param starts_1d: Start positions
+   :param ends_1d: End positions
+
+.. py:method:: ax.stx_rectangle(xx, yy, width, height, track=True, id=None, **kwargs)
+
+   Draw rectangle.
+
+   :param xx: X position
+   :param yy: Y position
+   :param width: Rectangle width
+   :param height: Rectangle height
+
+.. py:method:: ax.stx_joyplot(arrays, track=True, id=None, **kwargs)
+
+   Plot joyplot (ridgeline plot).
+
+   :param arrays: List of arrays
+
+Seaborn Wrappers
+~~~~~~~~~~~~~~~~
+
+.. py:method:: ax.sns_barplot(data=None, x=None, y=None, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_boxplot(data=None, x=None, y=None, strip=False, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_violinplot(data=None, x=None, y=None, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_stripplot(data=None, x=None, y=None, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_swarmplot(data=None, x=None, y=None, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_heatmap(*args, xyz=False, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_histplot(data=None, x=None, y=None, bins=10, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_kdeplot(data=None, x=None, y=None, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_scatterplot(data=None, x=None, y=None, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_lineplot(data=None, x=None, y=None, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_jointplot(*args, track=True, id=None, **kwargs)
+.. py:method:: ax.sns_pairplot(*args, track=True, id=None, **kwargs)
+
+Axis Utilities
+~~~~~~~~~~~~~~
+
+.. py:method:: ax.set_xyt(x=None, y=None, t=None)
+
+   Set xlabel, ylabel, and title in one call.
+
+.. py:method:: ax.hide_spines(*spines)
+
+   Hide specified spines (top, right, bottom, left).
diff --git a/src/scitex/_sphinx_html/_sources/source/api/project.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/project.rst.txt
new file mode 100644
index 000000000..b0440a59f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/project.rst.txt
@@ -0,0 +1,7 @@
+project Module (``stx.project``)
+================================
+
+.. automodule:: scitex.project
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/repro.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/repro.rst.txt
new file mode 100644
index 000000000..0e8dc4fea
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/repro.rst.txt
@@ -0,0 +1,71 @@
+Repro Module (``stx.repro``)
+============================
+
+Reproducibility utilities: random state management, ID generation,
+timestamps, and array hashing.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Fix all random seeds (numpy, torch, random, ...)
+   rng = stx.repro.get()           # Global manager (seed=42)
+   rng = stx.repro.reset(seed=123) # Reset with new seed
+
+   # Named generators for deterministic results
+   data_gen = rng.get_np_generator("data")
+   data = data_gen.random(100)  # Same seed+name = same result
+
+   # Unique identifiers
+   stx.repro.gen_id()
+   # → "2026Y-02M-13D-14h30m15s_a3Bc9xY2"
+
+   stx.repro.gen_timestamp()
+   # → "2026-0213-1430"
+
+   # Verify reproducibility
+   rng.verify(data, "train_data")  # First: caches hash
+   rng.verify(data, "train_data")  # Later: verifies match
+
+RandomStateManager
+------------------
+
+Central class for managing random states across libraries.
+
+.. code-block:: python
+
+   rng = stx.repro.RandomStateManager(seed=42)
+
+   # Named generators (same name + seed = deterministic)
+   np_gen = rng.get_np_generator("experiment")
+   torch_gen = rng.get_torch_generator("model")
+
+   # Checkpoint and restore
+   rng.checkpoint("before_training")
+   rng.restore("before_training.pkl")
+
+   # Temporary seed change
+   with rng.temporary_seed(999):
+       noise = rng.get_np_generator("noise").random(10)
+
+Automatically fixes seeds for: ``random``, ``numpy``, ``torch`` (+ CUDA),
+``tensorflow``, ``jax``.
+
+Available Functions
+-------------------
+
+- ``get(verbose)`` -- Get or create global RandomStateManager singleton
+- ``reset(seed, verbose)`` -- Reset global instance with new seed
+- ``fix_seeds(seed, ...)`` -- Legacy function (use RandomStateManager instead)
+- ``gen_id(time_format, N)`` -- Generate unique timestamp + random ID
+- ``gen_timestamp()`` -- Generate timestamp string for file naming
+- ``hash_array(array_data)`` -- SHA256 hash of numpy array (16 chars)
+
+API Reference
+-------------
+
+.. automodule:: scitex.repro
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/resource.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/resource.rst.txt
new file mode 100644
index 000000000..d4fbcc001
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/resource.rst.txt
@@ -0,0 +1,7 @@
+resource Module (``stx.resource``)
+==================================
+
+.. automodule:: scitex.resource
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/rng.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/rng.rst.txt
new file mode 100644
index 000000000..a6ab74def
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/rng.rst.txt
@@ -0,0 +1,7 @@
+rng Module (``stx.rng``)
+========================
+
+.. automodule:: scitex.rng
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/schema.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/schema.rst.txt
new file mode 100644
index 000000000..919582dbf
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/schema.rst.txt
@@ -0,0 +1,7 @@
+schema Module (``stx.schema``)
+==============================
+
+.. automodule:: scitex.schema
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/scholar.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/scholar.rst.txt
new file mode 100644
index 000000000..2be71119e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/scholar.rst.txt
@@ -0,0 +1,133 @@
+Scholar Module (``stx.scholar``)
+=================================
+
+Literature management: search papers, download PDFs, enrich BibTeX,
+and organize a local library across multiple projects.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   from scitex.scholar import Scholar
+
+   scholar = Scholar(project="my_research")
+
+   # Load and enrich BibTeX
+   papers = scholar.load_bibtex("references.bib")
+   enriched = scholar.enrich_papers(papers)
+   # Adds: DOIs, abstracts, citation counts, impact factors
+
+   # Save to library and export
+   scholar.save_papers_to_library(enriched)
+   scholar.save_papers_as_bibtex(enriched, "enriched.bib")
+
+   # Search your library
+   results = scholar.search_library("neural oscillations")
+
+   # Download PDFs
+   scholar.download_pdfs(dois, output_dir)
+
+CLI Usage
+---------
+
+.. code-block:: bash
+
+   # Full pipeline from BibTeX
+   scitex scholar bibtex refs.bib --project myresearch --num-workers 8
+
+   # Search papers
+   scitex scholar search "deep learning EEG"
+
+   # Download PDFs
+   scitex scholar download --doi 10.1038/nature12373
+
+   # Institutional authentication
+   scitex scholar auth --method openathens
+   scitex scholar auth --method shibboleth --institution "MIT"
+
+Data Sources
+------------
+
+Searches and enriches from:
+
+- **CrossRef** (167M+ papers) -- DOI resolution, citation counts
+- **Semantic Scholar** -- Abstracts, references, influence scores
+- **PubMed** -- Biomedical literature
+- **arXiv** -- Preprints
+- **OpenAlex** (284M+ works) -- Open metadata
+
+Key Classes
+-----------
+
+- ``Scholar`` -- Main entry point (search, enrich, download, organize)
+- ``Paper`` -- Type-safe metadata container (Pydantic model)
+- ``Papers`` -- Collection with filtering, sorting, and export
+- ``ScholarConfig`` -- YAML-based configuration
+- ``ScholarLibrary`` -- Local library storage and caching
+
+Paper Metadata
+--------------
+
+Each ``Paper`` contains structured metadata sections:
+
+.. code-block:: python
+
+   paper.metadata.basic          # title, authors, year, abstract, keywords
+   paper.metadata.id             # DOI, arXiv, PMID, Semantic Scholar ID
+   paper.metadata.publication    # journal, impact factor, volume, issue
+   paper.metadata.citation_count # total + yearly breakdown (2015--2024)
+   paper.metadata.url            # DOI URL, publisher, arXiv, PDFs
+   paper.metadata.access         # open access status, license
+
+Filtering and Sorting
+---------------------
+
+.. code-block:: python
+
+   # Criteria-based filtering
+   recent = papers.filter(year_min=2020, has_doi=True)
+   elite = papers.filter(min_impact_factor=10, min_citations=500)
+
+   # Lambda filtering
+   custom = papers.filter(lambda p: "EEG" in (p.metadata.basic.title or ""))
+
+   # Sorting
+   papers.sort_by("year", reverse=True)
+   papers.sort_by("citation_count", reverse=True)
+
+   # Chaining
+   top_recent = papers.filter(year_min=2020).sort_by("citation_count", reverse=True)
+
+Project Organization
+--------------------
+
+.. code-block:: python
+
+   scholar = Scholar(project="review_paper")
+   scholar.list_projects()
+   papers = scholar.load_project()
+
+   # Export to multiple formats
+   scholar.save_papers_as_bibtex(papers, "output.bib")
+   papers.to_dataframe()  # pandas DataFrame
+
+Storage Architecture
+--------------------
+
+.. code-block:: text
+
+   ~/.scitex/scholar/library/
+   +-- MASTER/                     # Centralized master storage
+   |   +-- 8DIGIT01/              # Hash-based unique ID from DOI
+   |   |   +-- metadata.json
+   |   |   +-- paper.pdf
+   +-- project_name/               # Project-specific symlinks
+       +-- Author-Year-Journal -> ../MASTER/8DIGIT01
+
+API Reference
+-------------
+
+.. automodule:: scitex.scholar
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/security.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/security.rst.txt
new file mode 100644
index 000000000..232a5da7f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/security.rst.txt
@@ -0,0 +1,7 @@
+security Module (``stx.security``)
+==================================
+
+.. automodule:: scitex.security
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/session.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/session.rst.txt
new file mode 100644
index 000000000..8f16f4670
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/session.rst.txt
@@ -0,0 +1,213 @@
+Session Decorator (``@stx.session``)
+=====================================
+
+The ``@stx.session`` decorator is the primary entry point for SciTeX
+scripts. It wraps a function to provide automatic CLI generation,
+output directory management, configuration injection, and provenance tracking.
+
+Basic Usage
+-----------
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(
+       data_path="data.csv",       # CLI: --data-path data.csv
+       threshold=0.5,              # CLI: --threshold 0.7
+       CONFIG=stx.INJECTED,        # Auto-injected session config
+       plt=stx.INJECTED,           # Pre-configured matplotlib
+       logger=stx.INJECTED,        # Session logger
+   ):
+       """Analyze experimental data."""
+       data = stx.io.load(data_path)
+       result = process(data, threshold)
+       stx.io.save(result, "output.csv")
+       return 0  # exit code (0 = success)
+
+   if __name__ == "__main__":
+       main()  # No arguments triggers CLI mode
+
+Run from the command line:
+
+.. code-block:: bash
+
+   python my_script.py --data-path experiment.csv --threshold 0.3
+   python my_script.py --help  # Shows all parameters with defaults
+
+How It Works
+------------
+
+.. image:: ../_static/session_lifecycle.png
+   :width: 60%
+   :align: center
+   :alt: Session lifecycle: main() → Parse CLI → Create dir → Load config → Execute → SUCCESS or ERROR
+
+When ``main()`` is called **without arguments**, the decorator:
+
+1. **Parses CLI arguments** from the function signature (type hints and defaults become ``argparse`` options)
+2. **Creates a session directory** under ``script_out/RUNNING/{session_id}/``
+3. **Loads configuration** from ``./config/*.yaml`` files into ``CONFIG``
+4. **Injects globals** (``CONFIG``, ``plt``, ``COLORS``, ``logger``, ``rngg``) into the function
+5. **Redirects stdout/stderr** to log files
+6. **Executes the function** with parsed arguments
+7. **Moves output** from ``RUNNING/`` to ``FINISHED_SUCCESS/`` (or ``FINISHED_ERROR/``)
+
+When called **with arguments** (e.g., ``main(data_path="x.csv")``), the decorator
+is bypassed and the function runs directly -- useful for testing and notebooks.
+
+Output Directory Structure
+--------------------------
+
+Each run produces a self-contained output directory:
+
+.. code-block:: text
+
+   my_script_out/
+   +-- FINISHED_SUCCESS/
+   |   +-- 2026Y-02M-13D-14h30m15s_Z5MR/
+   |       +-- CONFIGS/
+   |       |   +-- CONFIG.yaml     # Frozen configuration
+   |       |   +-- CONFIG.pkl      # Pickled config
+   |       +-- logs/
+   |       |   +-- stdout.log      # Captured stdout
+   |       |   +-- stderr.log      # Captured stderr
+   |       +-- output.csv          # Your saved files
+   |       +-- sine.png            # Your saved figures
+   |       +-- sine.csv            # Auto-exported figure data
+   +-- FINISHED_ERROR/
+   |   +-- ...                     # Runs that returned non-zero
+   +-- RUNNING/
+       +-- ...                     # Currently active sessions
+
+The session ID format is ``YYYY-MM-DD-HH:MM:SS_XXXX`` where ``XXXX`` is
+a random 4-character suffix for uniqueness.
+
+Injected Parameters
+-------------------
+
+Use ``stx.INJECTED`` as the default value to receive auto-injected objects:
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 20 60
+
+   * - Parameter Name
+     - Type
+     - Description
+   * - ``CONFIG``
+     - ``DotDict``
+     - Session config with ``ID``, ``SDIR_RUN``, ``FILE``, ``ARGS``, plus all ``./config/*.yaml`` values
+   * - ``plt``
+     - module
+     - ``matplotlib.pyplot`` configured for the session (Agg backend, style settings)
+   * - ``COLORS``
+     - ``DotDict``
+     - Color palette for consistent plotting
+   * - ``logger``
+     - Logger
+     - SciTeX logger writing to session log files
+   * - ``rngg``
+     - ``RandomStateManager``
+     - Reproducibility manager (seeds fixed by default)
+
+Only request the parameters you need:
+
+.. code-block:: python
+
+   @stx.session
+   def main(n=100, CONFIG=stx.INJECTED):
+       """Minimal example -- only CONFIG injected."""
+       print(f"Session ID: {CONFIG.ID}")
+       print(f"Output dir: {CONFIG.SDIR_RUN}")
+       return 0
+
+CONFIG Object
+-------------
+
+The injected ``CONFIG`` is a ``DotDict`` supporting both dictionary and
+dot-notation access:
+
+.. code-block:: python
+
+   CONFIG["MODEL"]["hidden_size"]   # dict-style
+   CONFIG.MODEL.hidden_size         # dot-style (equivalent)
+
+It contains:
+
+.. code-block:: python
+
+   CONFIG.ID             # "2026Y-02M-13D-14h30m15s_Z5MR"
+   CONFIG.PID            # Process ID
+   CONFIG.FILE           # Path to the script
+   CONFIG.SDIR_OUT       # Base output directory
+   CONFIG.SDIR_RUN       # Current session's output directory
+   CONFIG.START_DATETIME # When the session started
+   CONFIG.ARGS           # Parsed CLI arguments as dict
+   CONFIG.EXIT_STATUS    # 0 (success), 1 (error), or None
+
+Any YAML files in ``./config/`` are merged into CONFIG:
+
+.. code-block:: yaml
+
+   # ./config/EXPERIMENT.yaml
+   learning_rate: 0.001
+   batch_size: 32
+
+.. code-block:: python
+
+   # Accessible as:
+   CONFIG.EXPERIMENT.learning_rate  # 0.001
+   CONFIG.EXPERIMENT.batch_size     # 32
+
+Decorator Options
+-----------------
+
+.. code-block:: python
+
+   @stx.session(verbose=True, agg=False, notify=True, sdir_suffix="v2")
+   def main(...):
+       ...
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 15 15 50
+
+   * - Option
+     - Type
+     - Default
+     - Description
+   * - ``verbose``
+     - bool
+     - ``False``
+     - Enable verbose logging
+   * - ``agg``
+     - bool
+     - ``True``
+     - Use matplotlib Agg backend (set ``False`` for interactive plots)
+   * - ``notify``
+     - bool
+     - ``False``
+     - Send notification when session completes
+   * - ``sdir_suffix``
+     - str
+     - ``None``
+     - Append suffix to output directory name
+
+Best Practices
+--------------
+
+1. **One session per script** -- each ``.py`` file should have one ``@stx.session`` function
+2. **Return 0 for success** -- the return value becomes the exit status
+3. **Save outputs with** ``stx.io.save`` -- files go into the session directory and are provenance-tracked
+4. **Put config in YAML** -- use ``./config/*.yaml`` instead of hardcoding parameters
+5. **Use** ``stx.repro.fix_seeds()`` -- already called by default via ``rngg``
+
+API Reference
+-------------
+
+.. automodule:: scitex.session
+   :members:
+   :no-undoc-members:
+   :exclude-members: _InjectedSentinel
diff --git a/src/scitex/_sphinx_html/_sources/source/api/sh.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/sh.rst.txt
new file mode 100644
index 000000000..7c4694af6
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/sh.rst.txt
@@ -0,0 +1,7 @@
+sh Module (``stx.sh``)
+======================
+
+.. automodule:: scitex.sh
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/social.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/social.rst.txt
new file mode 100644
index 000000000..cc82af401
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/social.rst.txt
@@ -0,0 +1,7 @@
+social Module (``stx.social``)
+==============================
+
+.. automodule:: scitex.social
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/stats.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/stats.rst.txt
new file mode 100644
index 000000000..17ca488dd
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/stats.rst.txt
@@ -0,0 +1,153 @@
+Stats Module (``stx.stats``)
+============================
+
+23 statistical tests with effect sizes, confidence intervals, and
+publication-ready formatting.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+    import scitex as stx
+    import numpy as np
+
+    g1 = np.random.normal(0, 1, 50)
+    g2 = np.random.normal(0.5, 1, 50)
+
+    # Run a test
+    result = stx.stats.test_ttest_ind(g1, g2)
+
+    # Result is a flat dict with all details
+    print(result["statistic"])     # t-statistic
+    print(result["pvalue"])        # p-value
+    print(result["effect_size"])   # Cohen's d
+    print(result["stars"])         # Significance stars
+
+    # Get as DataFrame or LaTeX
+    df = stx.stats.test_ttest_ind(g1, g2, return_as="dataframe")
+    tex = stx.stats.test_ttest_ind(g1, g2, return_as="latex")
+
+Available Tests
+---------------
+
+**Parametric**
+
+- ``test_ttest_1samp(data, popmean)`` -- One-sample t-test
+- ``test_ttest_ind(g1, g2)`` -- Independent two-sample t-test
+- ``test_ttest_rel(g1, g2)`` -- Paired t-test
+- ``test_anova(*groups)`` -- One-way ANOVA
+- ``test_anova_2way(data, factor1, factor2)`` -- Two-way ANOVA
+- ``test_anova_rm(data, groups)`` -- Repeated measures ANOVA
+
+**Non-parametric**
+
+- ``test_mannwhitneyu(g1, g2)`` -- Mann-Whitney U test
+- ``test_wilcoxon(g1, g2)`` -- Wilcoxon signed-rank test
+- ``test_kruskal(*groups)`` -- Kruskal-Wallis H test
+- ``test_friedman(*groups)`` -- Friedman test
+- ``test_brunner_munzel(g1, g2)`` -- Brunner-Munzel test
+
+**Correlation**
+
+- ``test_pearson(x, y)`` -- Pearson correlation
+- ``test_spearman(x, y)`` -- Spearman rank correlation
+- ``test_kendall(x, y)`` -- Kendall tau correlation
+- ``test_theilsen(x, y)`` -- Theil-Sen robust regression
+
+**Categorical**
+
+- ``test_chi2(observed)`` -- Chi-squared test
+- ``test_fisher(table)`` -- Fisher's exact test
+- ``test_mcnemar(table)`` -- McNemar test
+- ``test_cochran_q(*groups)`` -- Cochran's Q test
+
+**Normality**
+
+- ``test_shapiro(data)`` -- Shapiro-Wilk test
+- ``test_ks_1samp(data)`` -- One-sample Kolmogorov-Smirnov test
+- ``test_ks_2samp(x, y)`` -- Two-sample Kolmogorov-Smirnov test
+- ``test_normality(*samples)`` -- Multi-sample normality check
+
+Seaborn-Style Data Parameter
+----------------------------
+
+All two-sample and one-sample tests accept an optional ``data`` parameter
+for DataFrame/CSV column resolution (like seaborn):
+
+.. code-block:: python
+
+   import pandas as pd
+
+   df = pd.read_csv("experiment.csv")
+
+   # Two-sample: column names as x/y
+   result = stx.stats.test_ttest_ind(x="before", y="after", data=df)
+
+   # One-sample: column name as x
+   result = stx.stats.test_shapiro(x="scores", data=df)
+
+   # Multi-group: value + group columns
+   result = stx.stats.test_anova(data=df, value_col="score", group_col="treatment")
+
+   # Also works with CSV path
+   result = stx.stats.test_ttest_ind(x="col1", y="col2", data="data.csv")
+
+Test Recommendation
+-------------------
+
+Not sure which test to use? Let SciTeX recommend:
+
+.. code-block:: python
+
+    recommendations = stx.stats.recommend_tests(
+        n_groups=2,
+        sample_sizes=[30, 35],
+        outcome_type="continuous",
+        paired=False,
+    )
+
+Output Formats
+--------------
+
+Every test supports ``return_as`` parameter:
+
+- ``"dict"`` (default) -- Returns plain dict with all results
+- ``"dataframe"`` -- Returns pandas DataFrame
+
+Descriptive Statistics
+----------------------
+
+.. code-block:: python
+
+    stx.stats.describe(data)                    # mean, std, median, IQR, etc.
+    stx.stats.effect_sizes.cohens_d(g1, g2)     # Cohen's d
+    stx.stats.test_normality(g1, g2)            # Multi-sample normality
+    stx.stats.p_to_stars(0.003)                 # "**"
+
+Multiple Comparison Correction
+------------------------------
+
+.. code-block:: python
+
+    corrected = stx.stats.correct_pvalues(
+        [0.01, 0.03, 0.05, 0.001],
+        method="fdr_bh",
+    )
+
+Post-hoc Tests
+--------------
+
+.. code-block:: python
+
+    stx.stats.posthoc_test(
+        [g1, g2, g3],
+        group_names=["Control", "Treatment A", "Treatment B"],
+        method="tukey",
+    )
+
+API Reference
+-------------
+
+.. automodule:: scitex.stats
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/str.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/str.rst.txt
new file mode 100644
index 000000000..b29b4f485
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/str.rst.txt
@@ -0,0 +1,7 @@
+str Module (``stx.str``)
+========================
+
+.. automodule:: scitex.str
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/template.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/template.rst.txt
new file mode 100644
index 000000000..1a8984122
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/template.rst.txt
@@ -0,0 +1,144 @@
+Template Module (``stx.template``)
+====================================
+
+Project scaffolding and code snippet templates for quick starts.
+Create fully structured research projects, Python packages, or
+academic papers with a single command.
+
+Project Templates
+-----------------
+
+.. code-block:: bash
+
+   # Clone a project template
+   scitex template clone research my_project
+   scitex template clone pip_project my_package
+   scitex template clone paper my_paper
+   scitex template clone app my_app
+   scitex template clone singularity my_container
+
+.. list-table::
+   :header-rows: 1
+   :widths: 25 75
+
+   * - Template
+     - Description
+   * - ``research``
+     - Full scientific workflow (scripts, data, docs, config, session scaffolding)
+   * - ``research_minimal``
+     - Essential modules only for lightweight experiments
+   * - ``pip_project``
+     - Distributable Python package for PyPI (``pyproject.toml``, tests, CI)
+   * - ``paper``
+     - Academic paper with LaTeX/BibTeX structure, SciTeX writer integration
+   * - ``app``
+     - SciTeX application with bridge-init, MountPoint, and EventBus
+   * - ``singularity``
+     - Reproducible containerized environment (Singularity/Apptainer definition)
+
+What You Get
+^^^^^^^^^^^^
+
+A ``research`` template creates:
+
+.. code-block:: text
+
+   my_project/
+   +-- config/
+   |   +-- EXPERIMENT.yaml       # Experiment parameters
+   +-- scripts/
+   |   +-- main.py               # @stx.session entry point
+   +-- data/                     # Raw data directory
+   +-- docs/                     # Documentation
+   +-- tests/                    # Test suite
+   +-- Makefile                  # Common tasks
+   +-- pyproject.toml            # Package metadata
+
+Git Strategies
+--------------
+
+Control how git is initialized in the cloned template:
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 80
+
+   * - Strategy
+     - Behavior
+   * - ``child`` (default)
+     - Fresh git repo, isolated from template
+   * - ``parent``
+     - Use parent repo if available
+   * - ``origin``
+     - Preserve template's git history
+   * - ``None``
+     - No git initialization
+
+.. code-block:: python
+
+   from scitex.template import clone_template
+
+   clone_template("research", "my_project", git_strategy="child")
+
+Code Templates
+--------------
+
+Ready-to-use code snippets for common SciTeX patterns. Each snippet
+is a complete, runnable script.
+
+.. code-block:: bash
+
+   # List available code templates
+   scitex template code list
+
+   # Get a template (prints to stdout)
+   scitex template code session           # Full @stx.session script
+   scitex template code session-minimal   # Lightweight session
+   scitex template code session-plot      # Figure-focused session
+   scitex template code session-stats     # Statistics-focused session
+   scitex template code io                # I/O operations
+   scitex template code plt               # Plotting patterns
+   scitex template code stats             # Statistical analysis
+   scitex template code scholar           # Literature management
+
+   # Save to a file
+   scitex template code session --output analyze.py
+
+Python API
+----------
+
+.. code-block:: python
+
+   from scitex.template import clone_template, get_code_template
+
+   # Clone a project template
+   clone_template("research", "my_experiment", git_strategy="child")
+
+   # Get a code snippet as a string
+   code = get_code_template("session")
+   print(code)
+
+   # Get a code snippet and write to file
+   code = get_code_template("session", filepath="analyze.py")
+
+MCP Interface
+-------------
+
+Code templates are also available to AI agents via MCP tools:
+
+.. code-block:: python
+
+   # List templates
+   template_list_code_templates()
+
+   # Get a specific template
+   template_get_code_template(name="session-plot")
+
+   # Clone a project
+   template_clone_template(template_type="research", name="my_project")
+
+API Reference
+-------------
+
+.. automodule:: scitex.template
+   :members:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/tex.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/tex.rst.txt
new file mode 100644
index 000000000..e0f775bd9
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/tex.rst.txt
@@ -0,0 +1,7 @@
+tex Module (``stx.tex``)
+========================
+
+.. automodule:: scitex.tex
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/torch.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/torch.rst.txt
new file mode 100644
index 000000000..1a11fe241
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/torch.rst.txt
@@ -0,0 +1,7 @@
+torch Module (``stx.torch``)
+============================
+
+.. automodule:: scitex.torch
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/tunnel.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/tunnel.rst.txt
new file mode 100644
index 000000000..e28928527
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/tunnel.rst.txt
@@ -0,0 +1,7 @@
+tunnel Module (``stx.tunnel``)
+==============================
+
+.. automodule:: scitex.tunnel
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/types.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/types.rst.txt
new file mode 100644
index 000000000..f4f1e1031
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/types.rst.txt
@@ -0,0 +1,7 @@
+types Module (``stx.types``)
+============================
+
+.. automodule:: scitex.types
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/ui.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/ui.rst.txt
new file mode 100644
index 000000000..2a8a65a64
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/ui.rst.txt
@@ -0,0 +1,7 @@
+ui Module (``stx.ui``)
+======================
+
+.. automodule:: scitex.ui
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/utils.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/utils.rst.txt
new file mode 100644
index 000000000..9b893ac20
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/utils.rst.txt
@@ -0,0 +1,7 @@
+utils Module (``stx.utils``)
+============================
+
+.. automodule:: scitex.utils
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/web.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/web.rst.txt
new file mode 100644
index 000000000..5b6589d9d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/web.rst.txt
@@ -0,0 +1,7 @@
+web Module (``stx.web``)
+========================
+
+.. automodule:: scitex.web
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/api/writer.rst.txt b/src/scitex/_sphinx_html/_sources/source/api/writer.rst.txt
new file mode 100644
index 000000000..c03eaeee1
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/api/writer.rst.txt
@@ -0,0 +1,166 @@
+Writer Module (``stx.writer``)
+==============================
+
+LaTeX manuscript compilation, figure/table management, bibliography
+handling, and IMRAD writing guidelines.
+
+.. note::
+
+   ``stx.writer`` wraps the standalone
+   `scitex-writer <https://github.com/ywatanabe1989/scitex-writer>`_ package.
+   Install with: ``pip install scitex-writer``.
+
+Quick Reference
+---------------
+
+.. code-block:: python
+
+   from scitex.writer import Writer
+   from pathlib import Path
+
+   writer = Writer(Path("my_paper"))
+
+   # Compile manuscript → PDF
+   result = writer.compile_manuscript()
+   if result.success:
+       print(f"PDF: {result.output_pdf}")
+
+   # Compile supplementary materials
+   result = writer.compile_supplementary()
+
+   # Compile revision with change tracking
+   result = writer.compile_revision(track_changes=True)
+
+CLI Usage
+---------
+
+.. code-block:: bash
+
+   # Compile
+   scitex writer compile manuscript ./my-paper
+   scitex writer compile supplementary ./my-paper
+   scitex writer compile revision ./my-paper --track-changes
+
+   # Bibliography
+   scitex writer bib list ./my-paper
+   scitex writer bib add ./my-paper "@article{...}"
+
+   # Tables and figures
+   scitex writer tables add ./my-paper data.csv
+   scitex writer figures list ./my-paper
+
+   # Writing guidelines
+   scitex writer guidelines get abstract
+
+Project Structure
+-----------------
+
+A writer project follows this layout:
+
+.. code-block:: text
+
+   my_paper/
+   +-- 00_shared/
+   |   +-- bibliography.bib
+   |   +-- figures/
+   |   +-- tables/
+   +-- 01_manuscript/
+   |   +-- main.tex
+   |   +-- sections/
+   +-- 02_supplementary/
+   |   +-- main.tex
+   +-- 03_revision/
+       +-- main.tex
+
+Create a new project:
+
+.. code-block:: bash
+
+   scitex template clone paper my_paper
+
+Key Classes
+-----------
+
+- ``Writer`` -- Main entry point for compilation and project management
+- ``CompilationResult`` -- Compilation outcome (success, output path, logs)
+- ``ManuscriptTree`` -- Document tree for the main manuscript
+- ``SupplementaryTree`` -- Document tree for supplementary materials
+- ``RevisionTree`` -- Document tree for revision responses
+
+Document Management
+-------------------
+
+**Figures:**
+
+.. code-block:: python
+
+   # Add figure (copies image + creates caption file)
+   writer.add_figure("fig1", "plot.png", caption="Results")
+
+   # List figures
+   writer.list_figures()
+
+   # Convert between formats
+   writer.convert_figure("figure.pdf", "figure.png", dpi=300)
+
+**Tables:**
+
+.. code-block:: python
+
+   # Add table from CSV
+   writer.add_table("tab1", csv_content, caption="Demographics")
+
+   # CSV ↔ LaTeX conversion
+   writer.csv_to_latex("data.csv", "table.tex")
+   writer.latex_to_csv("table.tex", "data.csv")
+
+**Bibliography:**
+
+.. code-block:: python
+
+   # Add BibTeX entry
+   writer.add_bibentry('@article{key, title={...}, ...}')
+
+   # Merge multiple .bib files
+   writer.merge_bibfiles(output_file="bibliography.bib")
+
+Writing Guidelines
+------------------
+
+IMRAD guidelines for each manuscript section:
+
+.. code-block:: bash
+
+   scitex writer guidelines list
+   scitex writer guidelines get introduction
+
+.. code-block:: python
+
+   from scitex.writer import guidelines
+
+   # Get guideline for a section
+   guide = guidelines.get("methods")
+
+   # Build editing prompt: guideline + draft
+   prompt = guidelines.build("discussion", draft_text)
+
+Compilation Options
+-------------------
+
+.. code-block:: python
+
+   result = writer.compile_manuscript(
+       timeout=300,        # Max compilation time (seconds)
+       no_figs=False,      # Exclude figures
+       no_tables=False,    # Exclude tables
+       draft=False,        # Draft mode (fast, lower quality)
+       dark_mode=False,    # Dark color scheme
+       quiet=False,        # Suppress output
+   )
+
+API Reference
+-------------
+
+.. automodule:: scitex.writer
+   :members:
+   :show-inheritance:
diff --git a/src/scitex/_sphinx_html/_sources/source/cli.rst.txt b/src/scitex/_sphinx_html/_sources/source/cli.rst.txt
new file mode 100644
index 000000000..aa4958a32
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/cli.rst.txt
@@ -0,0 +1,98 @@
+CLI Reference
+=============
+
+SciTeX provides a unified command-line interface. All commands follow the
+pattern:
+
+.. code-block:: bash
+
+   scitex <module> <command> [options]
+
+Run ``scitex --help-recursive`` to see every available command.
+
+General
+-------
+
+.. code-block:: bash
+
+   scitex --help-recursive        # Show all commands across all modules
+   scitex list-python-apis        # List all Python APIs (210 items)
+   scitex mcp list-tools          # List all MCP tools (120+ tools)
+
+Scholar
+-------
+
+Literature search, PDF management, and metadata enrichment.
+
+.. code-block:: bash
+
+   scitex scholar fetch <DOI>     # Download paper by DOI
+   scitex scholar bibtex <file>   # Enrich BibTeX file with metadata
+   scitex scholar search <query>  # Search for papers
+
+Stats
+-----
+
+Statistical testing with automatic test recommendation.
+
+.. code-block:: bash
+
+   scitex stats recommend         # Suggest appropriate statistical tests
+   scitex stats run <test> <data> # Run a specific test on data
+
+Audio
+-----
+
+Text-to-speech and audio playback.
+
+.. code-block:: bash
+
+   scitex audio speak <text>      # Convert text to speech
+   scitex audio play <file>       # Play an audio file
+
+Capture
+-------
+
+Screen capture and monitoring.
+
+.. code-block:: bash
+
+   scitex capture snap            # Take a screenshot
+   scitex capture monitor         # Start screen monitoring
+
+Template
+--------
+
+Project scaffolding from built-in templates.
+
+.. code-block:: bash
+
+   scitex template clone <type> <name>
+
+Available template types:
+
+- ``research`` -- Research project with session tracking
+- ``pip`` -- Python pip package
+- ``paper`` -- LaTeX manuscript project
+- ``app`` -- SciTeX app with bridge integration
+- ``singularity`` -- Singularity container definition
+
+Introspect
+----------
+
+Python code introspection for exploring APIs.
+
+.. code-block:: bash
+
+   scitex introspect api <module>       # List APIs for a module
+   scitex introspect source <function>  # View source code of a function
+
+Dev
+---
+
+Ecosystem development and version management.
+
+.. code-block:: bash
+
+   scitex dev versions            # Show versions of all installed packages
+   scitex dev ecosystem           # Manage ecosystem packages
diff --git a/src/scitex/_sphinx_html/_sources/source/concepts.rst.txt b/src/scitex/_sphinx_html/_sources/source/concepts.rst.txt
new file mode 100644
index 000000000..8db46951a
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+++ b/src/scitex/_sphinx_html/_sources/source/concepts.rst.txt
@@ -0,0 +1,267 @@
+Core Concepts
+=============
+
+This page explains the design patterns behind SciTeX. Understanding
+these patterns will help you use the toolkit effectively and extend it
+for your own workflows.
+
+
+Modular Architecture
+--------------------
+
+SciTeX is not a monolith. Each module is backed by an independent
+package that can be installed and used on its own:
+
+.. code-block:: bash
+
+   pip install scitex-io       # Use standalone: import scitex_io
+   pip install scitex-stats    # Use standalone: import scitex_stats
+   pip install figrecipe       # Use standalone: import figrecipe
+
+When you install ``scitex``, these packages are available under a
+unified namespace:
+
+.. code-block:: python
+
+   import scitex as stx
+
+   stx.io.save(data, "out.csv")     # scitex-io
+   stx.stats.run_test(...)          # scitex-stats
+   stx.plt.subplots()               # figrecipe
+
+**Lazy loading** ensures that importing ``scitex`` does not pull in every
+dependency. Modules are loaded only when first accessed. If you never
+touch ``stx.scholar``, its dependencies are never imported and startup
+remains fast.
+
+The main ``scitex`` package itself contains no runtime logic for I/O,
+statistics, or plotting. It is an orchestrator: it re-exports
+sub-package APIs, provides the CLI entry point, hosts the MCP server,
+and owns the session decorator.
+
+
+Session Decorator
+-----------------
+
+The ``@stx.session`` decorator converts a plain Python function into a
+reproducible, CLI-enabled experiment.
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(
+       n_epochs=50,
+       learning_rate=0.001,
+       CONFIG=stx.session.INJECTED,
+       logger=stx.session.INJECTED,
+   ):
+       logger.info(f"Training for {n_epochs} epochs at lr={learning_rate}")
+       return 0
+
+   if __name__ == "__main__":
+       main()
+
+**Why it exists.** Research scripts tend to accumulate boilerplate:
+argument parsing, output directory creation, logging setup, random seed
+management, config file loading. The session decorator handles all of
+these so that the function body contains only experiment logic.
+
+**What it provides:**
+
+1. **Automatic CLI.** Function parameters become command-line arguments.
+   ``n_epochs=50`` becomes ``--n-epochs 50`` with no argparse code.
+
+2. **Config injection.** Parameters in ``./config/*.yaml`` are aggregated
+   into a single ``CONFIG`` dict and injected at runtime.
+
+3. **Reproducibility.** Random seeds are fixed. All parameters, stdout,
+   and stderr are logged to the output directory.
+
+4. **Output organization.** Each run gets a timestamped directory under
+   ``script_out/``:
+
+   .. code-block:: text
+
+      script_out/FINISHED_SUCCESS/2026-03-18_14-30-00_AbC1/
+      +-- CONFIGS/CONFIG.yaml    # All parameters
+      +-- logs/stdout.log        # Captured output
+      +-- logs/stderr.log        # Captured errors
+
+Parameters marked ``stx.session.INJECTED`` are sentinel values. The
+decorator replaces them with runtime objects (logger, config, plotting
+backend, color palette, random generator). You never pass these
+yourself -- they signal to the decorator what to inject.
+
+
+Unified I/O
+------------
+
+``stx.io.save`` and ``stx.io.load`` provide a single interface for 30+
+file formats. The format is determined by the file extension:
+
+.. code-block:: python
+
+   stx.io.save(dataframe, "results.csv")
+   stx.io.save(array, "weights.npy")
+   stx.io.save(fig, "figure.png")
+   stx.io.save(config, "params.yaml")
+
+The same call pattern works for every type. No need to remember
+``pd.to_csv``, ``np.save``, ``fig.savefig``, or ``yaml.dump``.
+
+**Figure data export.** When saving a matplotlib figure, SciTeX
+automatically exports the plotted data as a CSV file alongside the
+image. This is a deliberate design choice: every figure in a publication
+should be backed by accessible data, so that reviewers and readers can
+verify the plot independently.
+
+.. code-block:: python
+
+   stx.io.save(fig, "plot.png")
+   # Creates: plot.png  (the image)
+   #          plot.csv  (the underlying data)
+
+This behavior is powered by figrecipe's ``RecordingFigure``, which
+tracks all data passed to plotting calls and serializes it on save.
+
+
+Three Interfaces
+-----------------
+
+Every SciTeX feature is accessible through three interfaces:
+
+1. **Python API** -- for scripts and notebooks
+2. **CLI** -- for shell workflows and automation
+3. **MCP** -- for AI agents via the Model Context Protocol
+
+For example, running a statistical test:
+
+.. code-block:: python
+
+   # Python API
+   result = stx.stats.run_test("ttest_ind", group1, group2)
+
+.. code-block:: bash
+
+   # CLI
+   scitex stats run ttest_ind --data data.csv
+
+.. code-block:: text
+
+   # MCP tool (called by AI agents)
+   stats_run_test(test="ttest_ind", data=[[1,2,3],[4,5,6]])
+
+This three-interface design means that any workflow a human builds in
+Python can be replicated by an AI agent through MCP, or scripted in a
+shell pipeline through the CLI. The interfaces share the same
+underlying implementation, so behavior is identical across all three.
+
+The MCP server aggregates 120+ tools from all sub-packages. AI agents
+can discover available tools, read documentation, and execute full
+research pipelines -- from literature search to manuscript compilation --
+without human intervention.
+
+
+Delegation Pattern
+-------------------
+
+The ``scitex`` package is intentionally thin. It delegates all domain
+logic to standalone packages:
+
+.. list-table::
+   :header-rows: 1
+   :widths: 25 25 50
+
+   * - scitex module
+     - Standalone package
+     - Responsibility
+   * - ``stx.io``
+     - scitex-io
+     - File I/O (30+ formats)
+   * - ``stx.stats``
+     - scitex-stats
+     - Statistical testing (23 tests)
+   * - ``stx.plt``
+     - figrecipe
+     - Publication-ready figures
+   * - ``stx.writer``
+     - scitex-writer
+     - LaTeX manuscript compilation
+   * - ``stx.scholar``
+     - scitex-scholar
+     - Literature search, PDF download
+   * - ``stx.dataset``
+     - scitex-dataset
+     - Scientific dataset access
+
+**Why delegation?** Each sub-package has its own release cycle, test
+suite, and dependency tree. A bug fix in ``scitex-io`` does not require
+releasing all of ``scitex``. Users who only need file I/O can
+``pip install scitex-io`` without pulling in matplotlib, LaTeX tooling,
+or audio dependencies.
+
+From the user's perspective, the delegation is invisible. A single
+``import scitex as stx`` provides access to everything. The lazy loader
+in ``scitex.__init__`` resolves ``stx.io`` to the ``scitex_io`` package
+on first access.
+
+
+Configuration
+--------------
+
+SciTeX uses a layered configuration system:
+
+**Project-level config (YAML files)**
+
+Place YAML files in ``./config/`` at your project root. The session
+decorator aggregates all files in this directory into a single ``CONFIG``
+dict:
+
+.. code-block:: text
+
+   config/
+   +-- model.yaml      # {"hidden_size": 256, "n_layers": 4}
+   +-- training.yaml   # {"epochs": 100, "batch_size": 32}
+
+.. code-block:: python
+
+   @stx.session
+   def main(CONFIG=stx.session.INJECTED):
+       print(CONFIG["hidden_size"])  # 256
+       print(CONFIG["epochs"])       # 100
+
+**Environment-level config (.env.d/)**
+
+Credentials, API keys, and machine-specific paths live in ``.env.d/``:
+
+.. code-block:: text
+
+   .env.d/
+   +-- entry.src            # Single entry point (source this)
+   +-- 00_scitex.env        # Base paths
+   +-- 01_scholar.env       # OpenAthens credentials
+   +-- 01_audio.env         # TTS backend config
+
+Source the entry point in your shell profile:
+
+.. code-block:: bash
+
+   # In ~/.bashrc or ~/.zshrc
+   source /path/to/.env.d/entry.src
+
+**MCP environment (.src files)**
+
+For AI agent deployments, a single ``.src`` file bundles all environment
+variables. The MCP server loads it at startup via ``SCITEX_ENV_SRC``:
+
+.. code-block:: bash
+
+   export SCITEX_ENV_SRC=~/.scitex/scitex/local.src
+
+This keeps the ``.mcp.json`` configuration static across machines --
+only the ``.src`` file changes between local and remote environments.
+
+The configuration hierarchy is: CLI arguments override YAML config,
+which overrides environment variables, which override built-in defaults.
diff --git a/src/scitex/_sphinx_html/_sources/source/ecosystem.rst.txt b/src/scitex/_sphinx_html/_sources/source/ecosystem.rst.txt
new file mode 100644
index 000000000..a4d47e881
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/ecosystem.rst.txt
@@ -0,0 +1,123 @@
+Ecosystem
+=========
+
+SciTeX is a modular toolkit composed of standalone packages. Each package
+can be installed and used independently, or accessed through the unified
+``import scitex`` interface.
+
+Delegation Pattern
+------------------
+
+The ``scitex`` package itself contains no runtime logic. It acts as an
+orchestrator that re-exports functionality from sub-packages via lazy
+imports. When you write ``scitex.io.load("data.csv")``, the call is
+delegated to the ``scitex_io`` package under the hood.
+
+This means:
+
+- **Standalone use**: ``pip install scitex-io`` then ``import scitex_io``
+- **Unified use**: ``pip install scitex[io]`` then ``import scitex; scitex.io.load(...)``
+
+Both paths execute the same code. The ``scitex`` package simply provides
+the namespace glue.
+
+.. code-block:: python
+
+   # These are equivalent:
+   import scitex_io
+   scitex_io.load("data.csv")
+
+   import scitex
+   scitex.io.load("data.csv")
+
+Package Reference
+-----------------
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 18 22 40
+
+   * - Package
+     - scitex Module
+     - PyPI
+     - Description
+   * - scitex-io
+     - ``scitex.io``
+     - ``pip install scitex-io``
+     - Unified file I/O for 30+ formats
+   * - scitex-stats
+     - ``scitex.stats``
+     - ``pip install scitex-stats``
+     - Publication-ready statistics (23+ tests)
+   * - figrecipe
+     - ``scitex.plt``
+     - ``pip install figrecipe``
+     - Publication-ready matplotlib figures
+   * - scitex-writer
+     - ``scitex.writer``
+     - ``pip install scitex-writer``
+     - LaTeX manuscript compilation
+   * - scitex-scholar
+     - ``scitex.scholar``
+     - ``pip install scitex-scholar``
+     - Literature search and management
+   * - scitex-audio
+     - ``scitex.audio``
+     - ``pip install scitex-audio``
+     - Text-to-speech and audio
+   * - scitex-dev
+     - ``scitex.dev``
+     - ``pip install scitex-dev``
+     - Developer tools, ecosystem management
+   * - scitex-clew
+     - ``scitex.clew``
+     - ``pip install scitex-clew``
+     - Hash-based reproducibility verification
+   * - scitex-linter
+     - ``scitex.linter``
+     - ``pip install scitex-linter``
+     - AST-based code pattern checking
+   * - scitex-dataset
+     - ``scitex.dataset``
+     - ``pip install scitex-dataset``
+     - Scientific dataset access (DANDI, OpenNeuro, PhysioNet)
+   * - crossref-local
+     - ``scitex.scholar.crossref``
+     - ``pip install crossref-local``
+     - Local CrossRef database (167M+ papers)
+   * - openalex-local
+     - ``scitex.scholar.openalex``
+     - ``pip install openalex-local``
+     - Local OpenAlex database (250M+ papers)
+   * - socialia
+     - ``scitex.social``
+     - ``pip install socialia``
+     - Social media posting (Twitter, LinkedIn)
+   * - scitex-app
+     - ``scitex.app``
+     - ``pip install scitex-app``
+     - Runtime SDK for SciTeX apps
+   * - scitex-cloud
+     - ``scitex.cloud``
+     - ``pip install scitex-cloud``
+     - Cloud platform integration
+   * - scitex-notification
+     - ``scitex.notify``
+     - ``pip install scitex-notification``
+     - Multi-backend notifications
+
+Installation
+------------
+
+Install individual packages or use extras through the main package:
+
+.. code-block:: bash
+
+   # Full installation (all packages)
+   pip install scitex[all]
+
+   # Typical research setup
+   pip install scitex[plt,stats,scholar]
+
+   # Individual standalone package
+   pip install figrecipe
diff --git a/src/scitex/_sphinx_html/_sources/source/gallery.rst.txt b/src/scitex/_sphinx_html/_sources/source/gallery.rst.txt
new file mode 100644
index 000000000..9afe7c776
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/gallery.rst.txt
@@ -0,0 +1,206 @@
+Plot Gallery
+============
+
+``stx.plt`` wraps matplotlib axes with data-tracking methods.
+All ``plot_*`` methods record data for automatic CSV export.
+
+Generate the full gallery locally:
+
+.. code-block:: python
+
+   import scitex as stx
+   stx.plt.gallery.generate(output_dir="./gallery")
+
+Line Plots
+----------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/line/stx_line.png
+          :width: 100%
+
+          ``ax.plot_line(x, y)``
+
+     - .. figure:: _static/gallery/line/stx_shaded_line.png
+          :width: 100%
+
+          ``ax.plot_shaded_line(x, y_mean, y_std)``
+
+   * - .. figure:: _static/gallery/line/plot.png
+          :width: 100%
+
+          ``ax.plot(x, y)`` (standard matplotlib)
+
+     - .. figure:: _static/gallery/line/step.png
+          :width: 100%
+
+          ``ax.step(x, y)``
+
+Statistical Plots
+-----------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/statistical/stx_mean_std.png
+          :width: 100%
+
+          ``ax.plot_mean_std(groups)``
+
+     - .. figure:: _static/gallery/statistical/stx_mean_ci.png
+          :width: 100%
+
+          ``ax.plot_mean_ci(groups)``
+
+   * - .. figure:: _static/gallery/statistical/stx_median_iqr.png
+          :width: 100%
+
+          ``ax.plot_median_iqr(groups)``
+
+     - .. figure:: _static/gallery/statistical/stx_errorbar.png
+          :width: 100%
+
+          ``ax.plot_errorbar(x, y, yerr)``
+
+Distribution Plots
+------------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/distribution/stx_kde.png
+          :width: 100%
+
+          ``ax.plot_kde(data)``
+
+     - .. figure:: _static/gallery/distribution/stx_ecdf.png
+          :width: 100%
+
+          ``ax.plot_ecdf(data)``
+
+   * - .. figure:: _static/gallery/distribution/stx_joyplot.png
+          :width: 100%
+
+          ``ax.plot_joyplot(groups)``
+
+     - .. figure:: _static/gallery/distribution/hist.png
+          :width: 100%
+
+          ``ax.hist(data)``
+
+Categorical Plots
+-----------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/categorical/stx_violin.png
+          :width: 100%
+
+          ``ax.plot_violin(groups)``
+
+     - .. figure:: _static/gallery/categorical/stx_box.png
+          :width: 100%
+
+          ``ax.plot_box(groups)``
+
+   * - .. figure:: _static/gallery/categorical/stx_bar.png
+          :width: 100%
+
+          ``ax.plot_bar(labels, values)``
+
+     - .. figure:: _static/gallery/categorical/stx_barh.png
+          :width: 100%
+
+          ``ax.plot_barh(labels, values)``
+
+Scatter Plots
+-------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/scatter/stx_scatter.png
+          :width: 100%
+
+          ``ax.plot_scatter(x, y)``
+
+     - .. figure:: _static/gallery/scatter/scatter.png
+          :width: 100%
+
+          ``ax.scatter(x, y)`` (standard matplotlib)
+
+Heatmaps and Grids
+-------------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/grid/stx_heatmap.png
+          :width: 100%
+
+          ``ax.plot_heatmap(matrix)``
+
+     - .. figure:: _static/gallery/grid/stx_conf_mat.png
+          :width: 100%
+
+          ``ax.plot_conf_mat(cm)``
+
+   * - .. figure:: _static/gallery/grid/stx_image.png
+          :width: 100%
+
+          ``ax.plot_image(img)``
+
+     - .. figure:: _static/gallery/grid/stx_imshow.png
+          :width: 100%
+
+          ``ax.plot_imshow(data)``
+
+Area Plots
+----------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/area/stx_fill_between.png
+          :width: 100%
+
+          ``ax.plot_fill_between(x, y1, y2)``
+
+     - .. figure:: _static/gallery/area/stx_fillv.png
+          :width: 100%
+
+          ``ax.plot_fillv(x_start, x_end)``
+
+Special Plots
+-------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/special/stx_raster.png
+          :width: 100%
+
+          ``ax.plot_raster(spike_times)``
+
+     - .. figure:: _static/gallery/special/stx_rectangle.png
+          :width: 100%
+
+          ``ax.plot_rectangle(xy, w, h)``
+
+Contour and Vector Plots
+-------------------------
+
+.. list-table::
+   :widths: 50 50
+
+   * - .. figure:: _static/gallery/contour/stx_contour.png
+          :width: 100%
+
+          ``ax.plot_contour(x, y, z)``
+
+     - .. figure:: _static/gallery/vector/quiver.png
+          :width: 100%
+
+          ``ax.quiver(x, y, u, v)``
diff --git a/src/scitex/_sphinx_html/_sources/source/index.rst.txt b/src/scitex/_sphinx_html/_sources/source/index.rst.txt
new file mode 100644
index 000000000..9a5d505de
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+++ b/src/scitex/_sphinx_html/_sources/source/index.rst.txt
@@ -0,0 +1,88 @@
+SciTeX Documentation
+====================
+
+SciTeX is a modular Python toolkit for research automation. It provides a
+unified interface across the full scientific workflow: from data loading and
+statistical analysis, through publication-ready plotting and manuscript
+compilation, to AI-assisted literature review. Every module is installable
+independently, and the entire surface area is exposed to AI agents through
+an MCP (Model Context Protocol) server.
+
+Key Features
+------------
+
+- **Session decorator** -- wrap any experiment function with ``@stx.session``
+  to get automatic directory management, reproducibility logging, and
+  error-safe cleanup.
+
+- **Unified I/O** -- ``stx.io.save`` / ``stx.io.load`` handle 40+ formats
+  (CSV, HDF5, YAML, images, PDFs, ...) through a single call.
+
+- **Statistics** -- ``stx.stats`` provides hypothesis testing, effect sizes,
+  power analysis, and multiple-comparison correction with APA-formatted
+  output.
+
+- **Plotting** -- ``stx.plt`` produces publication-ready figures via
+  `figrecipe <https://github.com/ywatanabe1989/figrecipe>`_, with
+  millimetre-based layouts, journal style presets, and automatic CSV data
+  export alongside every saved figure.
+
+- **Manuscript writing** -- ``stx.writer`` compiles LaTeX manuscripts,
+  manages BibTeX, and exports to Overleaf.
+
+- **Literature management** -- ``stx.scholar`` searches CrossRef, OpenAlex,
+  and Google Scholar; downloads and parses PDFs; and maintains a local
+  citation database.
+
+- **MCP for AI agents** -- every capability above is available as a
+  tool call through the built-in MCP server, so LLM agents can run
+  statistics, create figures, and compile papers programmatically.
+
+Getting Started
+---------------
+
+1. :doc:`installation` -- install the core package and choose the extras you
+   need.
+2. :doc:`quickstart` -- a five-minute walkthrough of the session decorator,
+   I/O, and plotting.
+3. :doc:`api/index` -- full API reference generated from docstrings.
+
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Getting Started
+
+   installation
+   quickstart
+
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Guides
+
+   concepts
+   gallery
+   ecosystem
+
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Interfaces
+
+   cli
+   mcp
+
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Reference
+
+   api/index
+
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
diff --git a/src/scitex/_sphinx_html/_sources/source/installation.rst.txt b/src/scitex/_sphinx_html/_sources/source/installation.rst.txt
new file mode 100644
index 000000000..5b692ce9f
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@@ -0,0 +1,166 @@
+Installation
+============
+
+Requirements
+------------
+
+- **Python 3.10+**
+- ``uv`` (strongly recommended) — install with ``pip install uv`` or
+  ``curl -LsSf https://astral.sh/uv/install.sh | sh``
+- ``pip`` 21+ also works, but expect 30–90 min for ``scitex[all]``
+  (see warning below)
+
+
+.. warning::
+
+   ``pip install "scitex[all]"`` typically takes **30–90 minutes** because
+   pip's serial resolver walks version histories of the large transitive
+   dependency set (numpy/pandas/torch/jax/playwright/openalex-local/…).
+   Use **uv** instead — it resolves the same set in parallel in **1–3
+   minutes**. Every ``pip install`` line on this page also works as
+   ``uv pip install`` and we recommend the uv form.
+
+
+Core Install
+------------
+
+The base package pulls in only lightweight dependencies and gives you access
+to session management, path utilities, string helpers, and the module
+discovery system.
+
+.. code-block:: bash
+
+   uv pip install scitex          # recommended
+   pip install scitex              # also works, slower for [all]
+
+
+Recommended: Install Everything
+-------------------------------
+
+If you want the full experience (plotting, statistics, I/O, scholar, writer,
+and every other module):
+
+.. code-block:: bash
+
+   uv pip install "scitex[all]"   # ~3 min
+   pip install "scitex[all]"       # ~30–90 min (resolver thrash)
+
+
+Research Workflow
+-----------------
+
+For a typical research project you need figures, statistics, and literature
+search but not audio, browser automation, or cloud tools:
+
+.. code-block:: bash
+
+   pip install "scitex[plt,stats,scholar]"
+
+
+Per-Module Extras
+-----------------
+
+Install only what you need. Each extra maps to a self-contained capability.
+
+.. list-table::
+   :header-rows: 1
+   :widths: 15 55
+
+   * - Extra
+     - Description
+   * - ``plt``
+     - Publication-ready figures via figrecipe (matplotlib, seaborn, Pillow)
+   * - ``stats``
+     - Hypothesis testing, effect sizes, power analysis (scitex-stats, scipy, statsmodels)
+   * - ``io``
+     - Unified I/O for 40+ formats (HDF5, Excel, YAML, PDF, images, ...)
+   * - ``scholar``
+     - Literature search and PDF management (CrossRef, OpenAlex, Semantic Scholar)
+   * - ``writer``
+     - LaTeX manuscript compilation, BibTeX management, Overleaf export
+   * - ``audio``
+     - Text-to-speech and audio utilities (scitex-audio)
+   * - ``ai``
+     - LLM APIs (OpenAI, Anthropic, Google, Groq) and ML tools (scikit-learn)
+   * - ``browser``
+     - Web automation via Playwright
+   * - ``capture``
+     - Screenshot capture (mss, Playwright)
+   * - ``dataset``
+     - Scientific dataset access (DANDI, OpenNeuro, PhysioNet)
+   * - ``cloud``
+     - Cloud integration utilities
+   * - ``app``
+     - Unified file storage SDK (scitex-app)
+   * - ``session``
+     - Session decorator with reproducibility logging
+   * - ``diagram``
+     - Diagram generation (Mermaid, Graphviz)
+   * - ``db``
+     - Database access (SQLAlchemy, PostgreSQL)
+   * - ``cv``
+     - Computer vision (OpenCV, Pillow)
+   * - ``dsp``
+     - Digital signal processing (scipy, tensorpac)
+   * - ``social``
+     - Social media posting (socialia)
+   * - ``tunnel``
+     - SSH tunnel management (scitex-tunnel)
+   * - ``all``
+     - Everything above
+
+
+Example combinations:
+
+.. code-block:: bash
+
+   # Neuroscience analysis
+   pip install "scitex[plt,stats,dsp,dataset]"
+
+   # Paper writing
+   pip install "scitex[writer,scholar,plt]"
+
+   # AI agent development
+   pip install "scitex[ai,browser,capture]"
+
+
+Development Install
+-------------------
+
+Clone the repository and install in editable mode with development tools:
+
+.. code-block:: bash
+
+   git clone https://github.com/ywatanabe1989/scitex-python.git
+   cd scitex-python
+   pip install -e ".[dev]"
+
+The ``dev`` extra includes pytest, ruff, mypy, Sphinx, and build tools.
+
+Using uv (recommended)
+^^^^^^^^^^^^^^^^^^^^^^^
+
+`uv <https://docs.astral.sh/uv/>`_ resolves and installs dependencies
+in parallel from a Rust resolver — roughly 10–30× faster than pip on
+``scitex[all]`` (3 min vs. 30–90 min). Install it once with
+``pip install uv`` (or the standalone shell installer), then prefix
+every install command on this page with ``uv``:
+
+.. code-block:: bash
+
+   uv pip install -e ".[dev]"
+
+
+Verifying the Installation
+--------------------------
+
+.. code-block:: python
+
+   import scitex as stx
+   print(stx.__version__)
+
+To check which optional modules are available:
+
+.. code-block:: python
+
+   stx.usage.list()
diff --git a/src/scitex/_sphinx_html/_sources/source/mcp.rst.txt b/src/scitex/_sphinx_html/_sources/source/mcp.rst.txt
new file mode 100644
index 000000000..429480610
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/mcp.rst.txt
@@ -0,0 +1,152 @@
+MCP Server
+==========
+
+What is MCP?
+------------
+
+The `Model Context Protocol <https://modelcontextprotocol.io/>`_ (MCP) is
+an open protocol that lets AI agents call external tools through a
+standardized interface. Instead of generating code and hoping it works, an
+agent can invoke a well-defined tool and receive structured results.
+
+SciTeX implements an MCP server that exposes 120+ tools covering the full
+research workflow. Any MCP-compatible client -- Claude Code, Cursor, or
+custom agents -- can use these tools to conduct literature searches, run
+statistics, create figures, and compile manuscripts.
+
+Setup
+-----
+
+Add the following to ``.mcp.json`` in your project root:
+
+.. code-block:: json
+
+   {
+     "mcpServers": {
+       "scitex": {
+         "command": "scitex",
+         "args": ["mcp", "start"],
+         "env": {
+           "SCITEX_ENV_SRC": "${SCITEX_ENV_SRC}"
+         }
+       }
+     }
+   }
+
+Then set the environment source file in your shell profile:
+
+.. code-block:: bash
+
+   # Local machine
+   export SCITEX_ENV_SRC=~/.scitex/scitex/local.src
+
+   # Remote server
+   export SCITEX_ENV_SRC=~/.scitex/scitex/remote.src
+
+Generate a template ``.src`` file:
+
+.. code-block:: bash
+
+   scitex env-template -o ~/.scitex/scitex/local.src
+
+Or install the MCP server globally:
+
+.. code-block:: bash
+
+   scitex mcp installation
+
+Tool Categories
+---------------
+
+.. list-table::
+   :header-rows: 1
+   :widths: 20 10 70
+
+   * - Category
+     - Tools
+     - Description
+   * - writer
+     - 28
+     - LaTeX manuscript compilation
+   * - scholar
+     - 23
+     - PDF download, metadata enrichment
+   * - capture
+     - 12
+     - Screen monitoring and capture
+   * - introspect
+     - 12
+     - Python code introspection
+   * - audio
+     - 10
+     - Text-to-speech, audio playback
+   * - stats
+     - 10
+     - Automated statistical testing
+   * - plt
+     - 9
+     - Matplotlib figure creation
+   * - diagram
+     - 9
+     - Mermaid and Graphviz diagrams
+   * - dataset
+     - 8
+     - Scientific dataset access
+   * - social
+     - 7
+     - Social media posting
+   * - canvas
+     - 7
+     - Scientific figure canvas
+   * - template
+     - 6
+     - Project scaffolding
+   * - verify
+     - 6
+     - Reproducibility verification
+   * - dev
+     - 6
+     - Ecosystem version management
+   * - ui
+     - 5
+     - Notifications
+   * - linter
+     - 3
+     - Code pattern checking
+
+All tools accept JSON parameters and return structured results.
+
+Example Workflow
+----------------
+
+A typical AI-driven research workflow chains tools across categories:
+
+1. **Scholar** -- Search literature and download papers
+
+   .. code-block:: text
+
+      scholar_search_papers(query="neural oscillations gamma band")
+      scholar_fetch_papers(dois=["10.1038/s41586-024-..."])
+
+2. **Stats** -- Analyze experimental data
+
+   .. code-block:: text
+
+      stats_recommend_tests(data=[[1.2, 3.4, ...], [2.1, 4.5, ...]])
+      stats_run_test(test="mann_whitney_u", groups=[[...], [...]])
+
+3. **Plt** -- Create publication-ready figures
+
+   .. code-block:: text
+
+      plt_bar(data={"Control": [1,2,3], "Treatment": [4,5,6]},
+              ylabel="Response", title="Figure 1")
+
+4. **Writer** -- Compile the manuscript
+
+   .. code-block:: text
+
+      writer_compile_manuscript(project="my_paper")
+
+The agent orchestrates these steps autonomously, passing outputs from one
+tool as inputs to the next.
diff --git a/src/scitex/_sphinx_html/_sources/source/quickstart.rst.txt b/src/scitex/_sphinx_html/_sources/source/quickstart.rst.txt
new file mode 100644
index 000000000..a1952758f
--- /dev/null
+++ b/src/scitex/_sphinx_html/_sources/source/quickstart.rst.txt
@@ -0,0 +1,287 @@
+Quickstart
+==========
+
+This guide covers the most common SciTeX workflows with working code
+examples. For design rationale, see :doc:`concepts`.
+
+
+Session Decorator
+-----------------
+
+The ``@stx.session`` decorator is the recommended entry point for any
+SciTeX script. It converts your function into a self-contained,
+reproducible experiment with automatic CLI generation, config loading,
+logging, and organized output directories.
+
+.. code-block:: python
+
+   import scitex as stx
+
+   @stx.session
+   def main(
+       n_samples=100,
+       CONFIG=stx.session.INJECTED,
+       plt=stx.session.INJECTED,
+       logger=stx.session.INJECTED,
+   ):
+       """Generate sample data and plot."""
+       import numpy as np
+
+       x = np.linspace(0, 2 * np.pi, n_samples)
+       y = np.sin(x)
+
+       fig, ax = stx.plt.subplots()
+       ax.plot_line(x, y)
+       ax.set_xyt("Time", "Amplitude", "Sine Wave")
+       stx.io.save(fig, "sine.png")  # Saves sine.png + sine.csv
+       return 0
+
+   if __name__ == "__main__":
+       main()
+
+Run from the command line -- arguments are generated automatically from
+the function signature:
+
+.. code-block:: bash
+
+   python script.py --n-samples 200
+
+Parameters marked with ``stx.session.INJECTED`` are provided by the
+session runtime. You never pass them yourself:
+
+- **CONFIG** -- aggregated YAML parameters from ``./config/*.yaml``
+- **plt** -- matplotlib wrapped by figrecipe
+- **logger** -- colored, file-backed logger
+- **COLORS** -- publication color palette
+- **rngg** -- seeded random number generator
+
+Output is organized into a timestamped directory:
+
+.. code-block:: text
+
+   script_out/FINISHED_SUCCESS/2026-03-18_14-30-00_AbC1/
+   +-- sine.png               # Figure with embedded metadata
+   +-- sine.csv               # Auto-exported plot data
+   +-- CONFIGS/CONFIG.yaml    # Reproducible parameters
+   +-- logs/stdout.log        # Standard output
+   +-- logs/stderr.log        # Standard error
+
+
+Unified File I/O
+-----------------
+
+``stx.io.save`` and ``stx.io.load`` handle 30+ formats through a single
+interface. The format is inferred from the file extension.
+
+.. code-block:: python
+
+   import scitex as stx
+   import numpy as np
+   import pandas as pd
+
+   # DataFrame -- CSV
+   df = pd.DataFrame({"x": [1, 2, 3], "y": [4, 5, 6]})
+   stx.io.save(df, "data.csv")
+   df = stx.io.load("data.csv")
+
+   # NumPy array -- NPY
+   arr = np.random.randn(100, 50)
+   stx.io.save(arr, "array.npy")
+   arr = stx.io.load("array.npy")
+
+   # Figure -- PNG (also generates CSV of plotted data)
+   fig, ax = stx.plt.subplots()
+   ax.plot_line([1, 2, 3, 4, 5])
+   stx.io.save(fig, "plot.png")  # Creates plot.png AND plot.csv
+
+   # Dictionary -- YAML
+   params = {"learning_rate": 0.001, "epochs": 100}
+   stx.io.save(params, "params.yaml")
+   params = stx.io.load("params.yaml")
+
+   # Dictionary -- JSON
+   metadata = {"subject": "S01", "task": "rest"}
+   stx.io.save(metadata, "meta.json")
+   metadata = stx.io.load("meta.json")
+
+   # Arbitrary object -- Pickle
+   stx.io.save({"complex": [1, 2, 3]}, "data.pkl")
+   obj = stx.io.load("data.pkl")
+
+When saving a matplotlib figure, SciTeX automatically exports the
+underlying data as a CSV file alongside the image. This ensures every
+figure in a paper can be independently verified and reproduced.
+
+
+Statistical Analysis
+--------------------
+
+SciTeX wraps 23 statistical tests with a consistent interface that
+includes effect sizes, confidence intervals, and power analysis.
+
+.. code-block:: python
+
+   import scitex as stx
+   import numpy as np
+
+   group1 = np.random.randn(30) + 0.5
+   group2 = np.random.randn(30)
+
+   # Run a t-test with full reporting
+   result = stx.stats.run_test(
+       "ttest_ind", group1, group2, return_as="dataframe"
+   )
+   print(result)
+   # Columns: test, statistic, p_value, effect_size, ci_lower, ci_upper, power
+
+Not sure which test to use? Let SciTeX recommend one:
+
+.. code-block:: python
+
+   data = {"group_a": group1, "group_b": group2}
+   recommendations = stx.stats.recommend_tests(data)
+   print(recommendations)
+
+Additional utilities:
+
+.. code-block:: python
+
+   # Multiple comparison correction
+   corrected = stx.stats.correct_pvalues([0.01, 0.04, 0.06], method="bonferroni")
+
+   # Effect size calculation
+   d = stx.stats.effect_size(group1, group2, test="cohens_d")
+
+   # Format results for publication
+   formatted = stx.stats.format_results(result)
+   # "t(58) = 2.34, p = .021, d = 0.60"
+
+
+Publication-Ready Figures
+-------------------------
+
+SciTeX delegates to `figrecipe <https://github.com/ywatanabe1989/figrecipe>`_
+for publication-quality matplotlib figures with a consistent API.
+
+**Basic line plot**
+
+.. code-block:: python
+
+   import scitex as stx
+   import numpy as np
+
+   x = np.linspace(0, 10, 200)
+
+   fig, ax = stx.plt.subplots()
+   ax.plot_line(x, np.sin(x))
+   ax.set_xyt("Time (s)", "Amplitude", "Sine Wave")
+   stx.io.save(fig, "line.png")
+
+**Multi-panel figure**
+
+.. code-block:: python
+
+   import scitex as stx
+   import numpy as np
+
+   fig, axes = stx.plt.subplots(1, 3)
+
+   # Panel A: line plot
+   x = np.linspace(0, 10, 200)
+   axes[0].plot_line(x, np.sin(x))
+   axes[0].set_xyt("Time", "Value", "Line")
+
+   # Panel B: violin plot
+   data = [np.random.randn(50) + i for i in range(3)]
+   axes[1].stx_violin(data)
+   axes[1].set_xyt("Group", "Value", "Violin")
+
+   # Panel C: heatmap
+   matrix = np.random.randn(10, 10)
+   axes[2].stx_heatmap(matrix)
+   axes[2].set_xyt("X", "Y", "Heatmap")
+
+   stx.io.save(fig, "panels.png")
+
+**Statistical visualization**
+
+.. code-block:: python
+
+   import scitex as stx
+   import numpy as np
+
+   data = np.random.randn(100, 50)
+
+   fig, ax = stx.plt.subplots()
+   ax.stx_mean_std(data)
+   ax.set_xyt("Time", "Value", "Mean +/- SD")
+
+   stx.io.save(fig, "stats_plot.png")
+
+
+Literature Management
+---------------------
+
+The scholar module handles paper discovery, PDF downloads, and BibTeX
+enrichment.
+
+**CLI usage**
+
+.. code-block:: bash
+
+   # Enrich a BibTeX file with missing metadata (DOIs, abstracts)
+   scitex scholar bibtex refs.bib
+
+   # Fetch a paper by DOI
+   scitex scholar fetch "10.1038/s41586-024-07487-w"
+
+   # Search for papers
+   scitex scholar search "deep learning EEG" --limit 20
+
+**Python API**
+
+.. code-block:: python
+
+   import scitex as stx
+
+   # Search for papers
+   results = stx.scholar.search("transformer attention mechanism", limit=10)
+
+   # Parse and enrich a BibTeX file
+   entries = stx.scholar.parse_bibtex("refs.bib")
+   enriched = stx.scholar.enrich_bibtex("refs.bib")
+
+
+CLI Usage
+---------
+
+SciTeX provides a unified CLI that mirrors the Python module structure.
+
+.. code-block:: bash
+
+   # Show all available commands
+   scitex --help-recursive
+
+   # Statistics
+   scitex stats recommend             # Suggest tests for your data
+   scitex stats run ttest_ind         # Run a specific test
+
+   # Scholar / Literature
+   scitex scholar fetch "10.1038/..." # Download paper by DOI
+   scitex scholar bibtex refs.bib     # Enrich BibTeX metadata
+   scitex scholar search "query"      # Search for papers
+
+   # Figures and diagrams
+   scitex plt info                    # Show available plot types
+
+   # Utilities
+   scitex audio speak "Analysis complete"  # Text-to-speech notification
+   scitex capture snap                     # Take a screenshot
+
+   # Introspection
+   scitex introspect api scitex.stats      # List APIs for a module
+   scitex list-python-apis                 # List all Python APIs
+   scitex mcp list-tools                   # List all MCP tools
+
+Every CLI command corresponds to a Python function and an MCP tool.
+See :doc:`concepts` for details on this three-interface design.
diff --git a/src/scitex/_sphinx_html/_static/_sphinx_javascript_frameworks_compat.js b/src/scitex/_sphinx_html/_static/_sphinx_javascript_frameworks_compat.js
new file mode 100644
index 000000000..81415803e
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/_sphinx_javascript_frameworks_compat.js
@@ -0,0 +1,123 @@
+/* Compatability shim for jQuery and underscores.js.
+ *
+ * Copyright Sphinx contributors
+ * Released under the two clause BSD licence
+ */
+
+/**
+ * small helper function to urldecode strings
+ *
+ * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
+ */
+jQuery.urldecode = function(x) {
+    if (!x) {
+        return x
+    }
+    return decodeURIComponent(x.replace(/\+/g, ' '));
+};
+
+/**
+ * small helper function to urlencode strings
+ */
+jQuery.urlencode = encodeURIComponent;
+
+/**
+ * This function returns the parsed url parameters of the
+ * current request. Multiple values per key are supported,
+ * it will always return arrays of strings for the value parts.
+ */
+jQuery.getQueryParameters = function(s) {
+    if (typeof s === 'undefined')
+        s = document.location.search;
+    var parts = s.substr(s.indexOf('?') + 1).split('&');
+    var result = {};
+    for (var i = 0; i < parts.length; i++) {
+        var tmp = parts[i].split('=', 2);
+        var key = jQuery.urldecode(tmp[0]);
+        var value = jQuery.urldecode(tmp[1]);
+        if (key in result)
+            result[key].push(value);
+        else
+            result[key] = [value];
+    }
+    return result;
+};
+
+/**
+ * highlight a given string on a jquery object by wrapping it in
+ * span elements with the given class name.
+ */
+jQuery.fn.highlightText = function(text, className) {
+    function highlight(node, addItems) {
+        if (node.nodeType === 3) {
+            var val = node.nodeValue;
+            var pos = val.toLowerCase().indexOf(text);
+            if (pos >= 0 &&
+                !jQuery(node.parentNode).hasClass(className) &&
+                !jQuery(node.parentNode).hasClass("nohighlight")) {
+                var span;
+                var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg");
+                if (isInSVG) {
+                    span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
+                } else {
+                    span = document.createElement("span");
+                    span.className = className;
+                }
+                span.appendChild(document.createTextNode(val.substr(pos, text.length)));
+                node.parentNode.insertBefore(span, node.parentNode.insertBefore(
+                    document.createTextNode(val.substr(pos + text.length)),
+                    node.nextSibling));
+                node.nodeValue = val.substr(0, pos);
+                if (isInSVG) {
+                    var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect");
+                    var bbox = node.parentElement.getBBox();
+                    rect.x.baseVal.value = bbox.x;
+                    rect.y.baseVal.value = bbox.y;
+                    rect.width.baseVal.value = bbox.width;
+                    rect.height.baseVal.value = bbox.height;
+                    rect.setAttribute('class', className);
+                    addItems.push({
+                        "parent": node.parentNode,
+                        "target": rect});
+                }
+            }
+        }
+        else if (!jQuery(node).is("button, select, textarea")) {
+            jQuery.each(node.childNodes, function() {
+                highlight(this, addItems);
+            });
+        }
+    }
+    var addItems = [];
+    var result = this.each(function() {
+        highlight(this, addItems);
+    });
+    for (var i = 0; i < addItems.length; ++i) {
+        jQuery(addItems[i].parent).before(addItems[i].target);
+    }
+    return result;
+};
+
+/*
+ * backward compatibility for jQuery.browser
+ * This will be supported until firefox bug is fixed.
+ */
+if (!jQuery.browser) {
+    jQuery.uaMatch = function(ua) {
+        ua = ua.toLowerCase();
+
+        var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
+            /(webkit)[ \/]([\w.]+)/.exec(ua) ||
+            /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) ||
+            /(msie) ([\w.]+)/.exec(ua) ||
+            ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) ||
+            [];
+
+        return {
+            browser: match[ 1 ] || "",
+            version: match[ 2 ] || "0"
+        };
+    };
+    jQuery.browser = {};
+    jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true;
+}
diff --git a/src/scitex/_sphinx_html/_static/architecture.mmd b/src/scitex/_sphinx_html/_static/architecture.mmd
new file mode 100644
index 000000000..54ad1616a
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/architecture.mmd
@@ -0,0 +1,35 @@
+%%{init: {"theme": "default"}}%%
+graph LR
+    subgraph Experiment
+        session["session"]
+        config["config"]
+        io["io"]
+        logging["logging"]
+        repro["repro"]
+    end
+
+    subgraph Analysis & Visualization
+        stats["stats"]
+        dsp["dsp"]
+        plt["plt"]
+        diagram["diagram"]
+    end
+
+    subgraph Publication
+        scholar["scholar"]
+        writer["writer"]
+        clew["clew"]
+    end
+
+    style session fill:#e8f4fd,stroke:#2196F3,stroke-width:2px
+    style config fill:#e8f4fd,stroke:#2196F3
+    style io fill:#e8f4fd,stroke:#2196F3
+    style logging fill:#e8f4fd,stroke:#2196F3
+    style repro fill:#e8f4fd,stroke:#2196F3
+    style stats fill:#fff3e0,stroke:#FF9800
+    style dsp fill:#fff3e0,stroke:#FF9800
+    style plt fill:#fff3e0,stroke:#FF9800
+    style diagram fill:#fff3e0,stroke:#FF9800
+    style scholar fill:#f3e5f5,stroke:#9C27B0
+    style writer fill:#f3e5f5,stroke:#9C27B0
+    style clew fill:#f3e5f5,stroke:#9C27B0
diff --git a/src/scitex/_sphinx_html/_static/base-stemmer.js b/src/scitex/_sphinx_html/_static/base-stemmer.js
new file mode 100644
index 000000000..e6fa0c492
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/base-stemmer.js
@@ -0,0 +1,476 @@
+// @ts-check
+
+/**@constructor*/
+BaseStemmer = function() {
+    /** @protected */
+    this.current = '';
+    this.cursor = 0;
+    this.limit = 0;
+    this.limit_backward = 0;
+    this.bra = 0;
+    this.ket = 0;
+
+    /**
+     * @param {string} value
+     */
+    this.setCurrent = function(value) {
+        this.current = value;
+        this.cursor = 0;
+        this.limit = this.current.length;
+        this.limit_backward = 0;
+        this.bra = this.cursor;
+        this.ket = this.limit;
+    };
+
+    /**
+     * @return {string}
+     */
+    this.getCurrent = function() {
+        return this.current;
+    };
+
+    /**
+     * @param {BaseStemmer} other
+     */
+    this.copy_from = function(other) {
+        /** @protected */
+        this.current          = other.current;
+        this.cursor           = other.cursor;
+        this.limit            = other.limit;
+        this.limit_backward   = other.limit_backward;
+        this.bra              = other.bra;
+        this.ket              = other.ket;
+    };
+
+    /**
+     * @param {number[]} s
+     * @param {number} min
+     * @param {number} max
+     * @return {boolean}
+     */
+    this.in_grouping = function(s, min, max) {
+        /** @protected */
+        if (this.cursor >= this.limit) return false;
+        var ch = this.current.charCodeAt(this.cursor);
+        if (ch > max || ch < min) return false;
+        ch -= min;
+        if ((s[ch >>> 3] & (0x1 << (ch & 0x7))) == 0) return false;
+        this.cursor++;
+        return true;
+    };
+
+    /**
+     * @param {number[]} s
+     * @param {number} min
+     * @param {number} max
+     * @return {boolean}
+     */
+    this.go_in_grouping = function(s, min, max) {
+        /** @protected */
+        while (this.cursor < this.limit) {
+            var ch = this.current.charCodeAt(this.cursor);
+            if (ch > max || ch < min)
+                return true;
+            ch -= min;
+            if ((s[ch >>> 3] & (0x1 << (ch & 0x7))) == 0)
+                return true;
+            this.cursor++;
+        }
+        return false;
+    };
+
+    /**
+     * @param {number[]} s
+     * @param {number} min
+     * @param {number} max
+     * @return {boolean}
+     */
+    this.in_grouping_b = function(s, min, max) {
+        /** @protected */
+        if (this.cursor <= this.limit_backward) return false;
+        var ch = this.current.charCodeAt(this.cursor - 1);
+        if (ch > max || ch < min) return false;
+        ch -= min;
+        if ((s[ch >>> 3] & (0x1 << (ch & 0x7))) == 0) return false;
+        this.cursor--;
+        return true;
+    };
+
+    /**
+     * @param {number[]} s
+     * @param {number} min
+     * @param {number} max
+     * @return {boolean}
+     */
+    this.go_in_grouping_b = function(s, min, max) {
+        /** @protected */
+        while (this.cursor > this.limit_backward) {
+            var ch = this.current.charCodeAt(this.cursor - 1);
+            if (ch > max || ch < min) return true;
+            ch -= min;
+            if ((s[ch >>> 3] & (0x1 << (ch & 0x7))) == 0) return true;
+            this.cursor--;
+        }
+        return false;
+    };
+
+    /**
+     * @param {number[]} s
+     * @param {number} min
+     * @param {number} max
+     * @return {boolean}
+     */
+    this.out_grouping = function(s, min, max) {
+        /** @protected */
+        if (this.cursor >= this.limit) return false;
+        var ch = this.current.charCodeAt(this.cursor);
+        if (ch > max || ch < min) {
+            this.cursor++;
+            return true;
+        }
+        ch -= min;
+        if ((s[ch >>> 3] & (0X1 << (ch & 0x7))) == 0) {
+            this.cursor++;
+            return true;
+        }
+        return false;
+    };
+
+    /**
+     * @param {number[]} s
+     * @param {number} min
+     * @param {number} max
+     * @return {boolean}
+     */
+    this.go_out_grouping = function(s, min, max) {
+        /** @protected */
+        while (this.cursor < this.limit) {
+            var ch = this.current.charCodeAt(this.cursor);
+            if (ch <= max && ch >= min) {
+                ch -= min;
+                if ((s[ch >>> 3] & (0X1 << (ch & 0x7))) != 0) {
+                    return true;
+                }
+            }
+            this.cursor++;
+        }
+        return false;
+    };
+
+    /**
+     * @param {number[]} s
+     * @param {number} min
+     * @param {number} max
+     * @return {boolean}
+     */
+    this.out_grouping_b = function(s, min, max) {
+        /** @protected */
+        if (this.cursor <= this.limit_backward) return false;
+        var ch = this.current.charCodeAt(this.cursor - 1);
+        if (ch > max || ch < min) {
+            this.cursor--;
+            return true;
+        }
+        ch -= min;
+        if ((s[ch >>> 3] & (0x1 << (ch & 0x7))) == 0) {
+            this.cursor--;
+            return true;
+        }
+        return false;
+    };
+
+    /**
+     * @param {number[]} s
+     * @param {number} min
+     * @param {number} max
+     * @return {boolean}
+     */
+    this.go_out_grouping_b = function(s, min, max) {
+        /** @protected */
+        while (this.cursor > this.limit_backward) {
+            var ch = this.current.charCodeAt(this.cursor - 1);
+            if (ch <= max && ch >= min) {
+                ch -= min;
+                if ((s[ch >>> 3] & (0x1 << (ch & 0x7))) != 0) {
+                    return true;
+                }
+            }
+            this.cursor--;
+        }
+        return false;
+    };
+
+    /**
+     * @param {string} s
+     * @return {boolean}
+     */
+    this.eq_s = function(s)
+    {
+        /** @protected */
+        if (this.limit - this.cursor < s.length) return false;
+        if (this.current.slice(this.cursor, this.cursor + s.length) != s)
+        {
+            return false;
+        }
+        this.cursor += s.length;
+        return true;
+    };
+
+    /**
+     * @param {string} s
+     * @return {boolean}
+     */
+    this.eq_s_b = function(s)
+    {
+        /** @protected */
+        if (this.cursor - this.limit_backward < s.length) return false;
+        if (this.current.slice(this.cursor - s.length, this.cursor) != s)
+        {
+            return false;
+        }
+        this.cursor -= s.length;
+        return true;
+    };
+
+    /**
+     * @param {Among[]} v
+     * @return {number}
+     */
+    this.find_among = function(v)
+    {
+        /** @protected */
+        var i = 0;
+        var j = v.length;
+
+        var c = this.cursor;
+        var l = this.limit;
+
+        var common_i = 0;
+        var common_j = 0;
+
+        var first_key_inspected = false;
+
+        while (true)
+        {
+            var k = i + ((j - i) >>> 1);
+            var diff = 0;
+            var common = common_i < common_j ? common_i : common_j; // smaller
+            // w[0]: string, w[1]: substring_i, w[2]: result, w[3]: function (optional)
+            var w = v[k];
+            var i2;
+            for (i2 = common; i2 < w[0].length; i2++)
+            {
+                if (c + common == l)
+                {
+                    diff = -1;
+                    break;
+                }
+                diff = this.current.charCodeAt(c + common) - w[0].charCodeAt(i2);
+                if (diff != 0) break;
+                common++;
+            }
+            if (diff < 0)
+            {
+                j = k;
+                common_j = common;
+            }
+            else
+            {
+                i = k;
+                common_i = common;
+            }
+            if (j - i <= 1)
+            {
+                if (i > 0) break; // v->s has been inspected
+                if (j == i) break; // only one item in v
+
+                // - but now we need to go round once more to get
+                // v->s inspected. This looks messy, but is actually
+                // the optimal approach.
+
+                if (first_key_inspected) break;
+                first_key_inspected = true;
+            }
+        }
+        do {
+            var w = v[i];
+            if (common_i >= w[0].length)
+            {
+                this.cursor = c + w[0].length;
+                if (w.length < 4) return w[2];
+                var res = w[3](this);
+                this.cursor = c + w[0].length;
+                if (res) return w[2];
+            }
+            i = w[1];
+        } while (i >= 0);
+        return 0;
+    };
+
+    // find_among_b is for backwards processing. Same comments apply
+    /**
+     * @param {Among[]} v
+     * @return {number}
+     */
+    this.find_among_b = function(v)
+    {
+        /** @protected */
+        var i = 0;
+        var j = v.length
+
+        var c = this.cursor;
+        var lb = this.limit_backward;
+
+        var common_i = 0;
+        var common_j = 0;
+
+        var first_key_inspected = false;
+
+        while (true)
+        {
+            var k = i + ((j - i) >> 1);
+            var diff = 0;
+            var common = common_i < common_j ? common_i : common_j;
+            var w = v[k];
+            var i2;
+            for (i2 = w[0].length - 1 - common; i2 >= 0; i2--)
+            {
+                if (c - common == lb)
+                {
+                    diff = -1;
+                    break;
+                }
+                diff = this.current.charCodeAt(c - 1 - common) - w[0].charCodeAt(i2);
+                if (diff != 0) break;
+                common++;
+            }
+            if (diff < 0)
+            {
+                j = k;
+                common_j = common;
+            }
+            else
+            {
+                i = k;
+                common_i = common;
+            }
+            if (j - i <= 1)
+            {
+                if (i > 0) break;
+                if (j == i) break;
+                if (first_key_inspected) break;
+                first_key_inspected = true;
+            }
+        }
+        do {
+            var w = v[i];
+            if (common_i >= w[0].length)
+            {
+                this.cursor = c - w[0].length;
+                if (w.length < 4) return w[2];
+                var res = w[3](this);
+                this.cursor = c - w[0].length;
+                if (res) return w[2];
+            }
+            i = w[1];
+        } while (i >= 0);
+        return 0;
+    };
+
+    /* to replace chars between c_bra and c_ket in this.current by the
+     * chars in s.
+     */
+    /**
+     * @param {number} c_bra
+     * @param {number} c_ket
+     * @param {string} s
+     * @return {number}
+     */
+    this.replace_s = function(c_bra, c_ket, s)
+    {
+        /** @protected */
+        var adjustment = s.length - (c_ket - c_bra);
+        this.current = this.current.slice(0, c_bra) + s + this.current.slice(c_ket);
+        this.limit += adjustment;
+        if (this.cursor >= c_ket) this.cursor += adjustment;
+        else if (this.cursor > c_bra) this.cursor = c_bra;
+        return adjustment;
+    };
+
+    /**
+     * @return {boolean}
+     */
+    this.slice_check = function()
+    {
+        /** @protected */
+        if (this.bra < 0 ||
+            this.bra > this.ket ||
+            this.ket > this.limit ||
+            this.limit > this.current.length)
+        {
+            return false;
+        }
+        return true;
+    };
+
+    /**
+     * @param {number} c_bra
+     * @return {boolean}
+     */
+    this.slice_from = function(s)
+    {
+        /** @protected */
+        var result = false;
+        if (this.slice_check())
+        {
+            this.replace_s(this.bra, this.ket, s);
+            result = true;
+        }
+        return result;
+    };
+
+    /**
+     * @return {boolean}
+     */
+    this.slice_del = function()
+    {
+        /** @protected */
+        return this.slice_from("");
+    };
+
+    /**
+     * @param {number} c_bra
+     * @param {number} c_ket
+     * @param {string} s
+     */
+    this.insert = function(c_bra, c_ket, s)
+    {
+        /** @protected */
+        var adjustment = this.replace_s(c_bra, c_ket, s);
+        if (c_bra <= this.bra) this.bra += adjustment;
+        if (c_bra <= this.ket) this.ket += adjustment;
+    };
+
+    /**
+     * @return {string}
+     */
+    this.slice_to = function()
+    {
+        /** @protected */
+        var result = '';
+        if (this.slice_check())
+        {
+            result = this.current.slice(this.bra, this.ket);
+        }
+        return result;
+    };
+
+    /**
+     * @return {string}
+     */
+    this.assign_to = function()
+    {
+        /** @protected */
+        return this.current.slice(0, this.limit);
+    };
+};
diff --git a/src/scitex/_sphinx_html/_static/basic.css b/src/scitex/_sphinx_html/_static/basic.css
new file mode 100644
index 000000000..4738b2edc
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/basic.css
@@ -0,0 +1,906 @@
+/*
+ * Sphinx stylesheet -- basic theme.
+ */
+
+/* -- main layout ----------------------------------------------------------- */
+
+div.clearer {
+    clear: both;
+}
+
+div.section::after {
+    display: block;
+    content: '';
+    clear: left;
+}
+
+/* -- relbar ---------------------------------------------------------------- */
+
+div.related {
+    width: 100%;
+    font-size: 90%;
+}
+
+div.related h3 {
+    display: none;
+}
+
+div.related ul {
+    margin: 0;
+    padding: 0 0 0 10px;
+    list-style: none;
+}
+
+div.related li {
+    display: inline;
+}
+
+div.related li.right {
+    float: right;
+    margin-right: 5px;
+}
+
+/* -- sidebar --------------------------------------------------------------- */
+
+div.sphinxsidebarwrapper {
+    padding: 10px 5px 0 10px;
+}
+
+div.sphinxsidebar {
+    float: left;
+    width: 230px;
+    margin-left: -100%;
+    font-size: 90%;
+    word-wrap: break-word;
+    overflow-wrap : break-word;
+}
+
+div.sphinxsidebar ul {
+    list-style: none;
+}
+
+div.sphinxsidebar ul ul,
+div.sphinxsidebar ul.want-points {
+    margin-left: 20px;
+    list-style: square;
+}
+
+div.sphinxsidebar ul ul {
+    margin-top: 0;
+    margin-bottom: 0;
+}
+
+div.sphinxsidebar form {
+    margin-top: 10px;
+}
+
+div.sphinxsidebar input {
+    border: 1px solid #98dbcc;
+    font-family: sans-serif;
+    font-size: 1em;
+}
+
+div.sphinxsidebar #searchbox form.search {
+    overflow: hidden;
+}
+
+div.sphinxsidebar #searchbox input[type="text"] {
+    float: left;
+    width: 80%;
+    padding: 0.25em;
+    box-sizing: border-box;
+}
+
+div.sphinxsidebar #searchbox input[type="submit"] {
+    float: left;
+    width: 20%;
+    border-left: none;
+    padding: 0.25em;
+    box-sizing: border-box;
+}
+
+
+img {
+    border: 0;
+    max-width: 100%;
+}
+
+/* -- search page ----------------------------------------------------------- */
+
+ul.search {
+    margin-top: 10px;
+}
+
+ul.search li {
+    padding: 5px 0;
+}
+
+ul.search li a {
+    font-weight: bold;
+}
+
+ul.search li p.context {
+    color: #888;
+    margin: 2px 0 0 30px;
+    text-align: left;
+}
+
+ul.keywordmatches li.goodmatch a {
+    font-weight: bold;
+}
+
+/* -- index page ------------------------------------------------------------ */
+
+table.contentstable {
+    width: 90%;
+    margin-left: auto;
+    margin-right: auto;
+}
+
+table.contentstable p.biglink {
+    line-height: 150%;
+}
+
+a.biglink {
+    font-size: 1.3em;
+}
+
+span.linkdescr {
+    font-style: italic;
+    padding-top: 5px;
+    font-size: 90%;
+}
+
+/* -- general index --------------------------------------------------------- */
+
+table.indextable {
+    width: 100%;
+}
+
+table.indextable td {
+    text-align: left;
+    vertical-align: top;
+}
+
+table.indextable ul {
+    margin-top: 0;
+    margin-bottom: 0;
+    list-style-type: none;
+}
+
+table.indextable > tbody > tr > td > ul {
+    padding-left: 0em;
+}
+
+table.indextable tr.pcap {
+    height: 10px;
+}
+
+table.indextable tr.cap {
+    margin-top: 10px;
+    background-color: #f2f2f2;
+}
+
+img.toggler {
+    margin-right: 3px;
+    margin-top: 3px;
+    cursor: pointer;
+}
+
+div.modindex-jumpbox {
+    border-top: 1px solid #ddd;
+    border-bottom: 1px solid #ddd;
+    margin: 1em 0 1em 0;
+    padding: 0.4em;
+}
+
+div.genindex-jumpbox {
+    border-top: 1px solid #ddd;
+    border-bottom: 1px solid #ddd;
+    margin: 1em 0 1em 0;
+    padding: 0.4em;
+}
+
+/* -- domain module index --------------------------------------------------- */
+
+table.modindextable td {
+    padding: 2px;
+    border-collapse: collapse;
+}
+
+/* -- general body styles --------------------------------------------------- */
+
+div.body {
+    min-width: 360px;
+    max-width: 800px;
+}
+
+div.body p, div.body dd, div.body li, div.body blockquote {
+    -moz-hyphens: auto;
+    -ms-hyphens: auto;
+    -webkit-hyphens: auto;
+    hyphens: auto;
+}
+
+a.headerlink {
+    visibility: hidden;
+}
+
+a:visited {
+    color: #551A8B;
+}
+
+h1:hover > a.headerlink,
+h2:hover > a.headerlink,
+h3:hover > a.headerlink,
+h4:hover > a.headerlink,
+h5:hover > a.headerlink,
+h6:hover > a.headerlink,
+dt:hover > a.headerlink,
+caption:hover > a.headerlink,
+p.caption:hover > a.headerlink,
+div.code-block-caption:hover > a.headerlink {
+    visibility: visible;
+}
+
+div.body p.caption {
+    text-align: inherit;
+}
+
+div.body td {
+    text-align: left;
+}
+
+.first {
+    margin-top: 0 !important;
+}
+
+p.rubric {
+    margin-top: 30px;
+    font-weight: bold;
+}
+
+img.align-left, figure.align-left, .figure.align-left, object.align-left {
+    clear: left;
+    float: left;
+    margin-right: 1em;
+}
+
+img.align-right, figure.align-right, .figure.align-right, object.align-right {
+    clear: right;
+    float: right;
+    margin-left: 1em;
+}
+
+img.align-center, figure.align-center, .figure.align-center, object.align-center {
+  display: block;
+  margin-left: auto;
+  margin-right: auto;
+}
+
+img.align-default, figure.align-default, .figure.align-default {
+  display: block;
+  margin-left: auto;
+  margin-right: auto;
+}
+
+.align-left {
+    text-align: left;
+}
+
+.align-center {
+    text-align: center;
+}
+
+.align-default {
+    text-align: center;
+}
+
+.align-right {
+    text-align: right;
+}
+
+/* -- sidebars -------------------------------------------------------------- */
+
+div.sidebar,
+aside.sidebar {
+    margin: 0 0 0.5em 1em;
+    border: 1px solid #ddb;
+    padding: 7px;
+    background-color: #ffe;
+    width: 40%;
+    float: right;
+    clear: right;
+    overflow-x: auto;
+}
+
+p.sidebar-title {
+    font-weight: bold;
+}
+
+nav.contents,
+aside.topic,
+div.admonition, div.topic, blockquote {
+    clear: left;
+}
+
+/* -- topics ---------------------------------------------------------------- */
+
+nav.contents,
+aside.topic,
+div.topic {
+    border: 1px solid #ccc;
+    padding: 7px;
+    margin: 10px 0 10px 0;
+}
+
+p.topic-title {
+    font-size: 1.1em;
+    font-weight: bold;
+    margin-top: 10px;
+}
+
+/* -- admonitions ----------------------------------------------------------- */
+
+div.admonition {
+    margin-top: 10px;
+    margin-bottom: 10px;
+    padding: 7px;
+}
+
+div.admonition dt {
+    font-weight: bold;
+}
+
+p.admonition-title {
+    margin: 0px 10px 5px 0px;
+    font-weight: bold;
+}
+
+div.body p.centered {
+    text-align: center;
+    margin-top: 25px;
+}
+
+/* -- content of sidebars/topics/admonitions -------------------------------- */
+
+div.sidebar > :last-child,
+aside.sidebar > :last-child,
+nav.contents > :last-child,
+aside.topic > :last-child,
+div.topic > :last-child,
+div.admonition > :last-child {
+    margin-bottom: 0;
+}
+
+div.sidebar::after,
+aside.sidebar::after,
+nav.contents::after,
+aside.topic::after,
+div.topic::after,
+div.admonition::after,
+blockquote::after {
+    display: block;
+    content: '';
+    clear: both;
+}
+
+/* -- tables ---------------------------------------------------------------- */
+
+table.docutils {
+    margin-top: 10px;
+    margin-bottom: 10px;
+    border: 0;
+    border-collapse: collapse;
+}
+
+table.align-center {
+    margin-left: auto;
+    margin-right: auto;
+}
+
+table.align-default {
+    margin-left: auto;
+    margin-right: auto;
+}
+
+table caption span.caption-number {
+    font-style: italic;
+}
+
+table caption span.caption-text {
+}
+
+table.docutils td, table.docutils th {
+    padding: 1px 8px 1px 5px;
+    border-top: 0;
+    border-left: 0;
+    border-right: 0;
+    border-bottom: 1px solid #aaa;
+}
+
+th {
+    text-align: left;
+    padding-right: 5px;
+}
+
+table.citation {
+    border-left: solid 1px gray;
+    margin-left: 1px;
+}
+
+table.citation td {
+    border-bottom: none;
+}
+
+th > :first-child,
+td > :first-child {
+    margin-top: 0px;
+}
+
+th > :last-child,
+td > :last-child {
+    margin-bottom: 0px;
+}
+
+/* -- figures --------------------------------------------------------------- */
+
+div.figure, figure {
+    margin: 0.5em;
+    padding: 0.5em;
+}
+
+div.figure p.caption, figcaption {
+    padding: 0.3em;
+}
+
+div.figure p.caption span.caption-number,
+figcaption span.caption-number {
+    font-style: italic;
+}
+
+div.figure p.caption span.caption-text,
+figcaption span.caption-text {
+}
+
+/* -- field list styles ----------------------------------------------------- */
+
+table.field-list td, table.field-list th {
+    border: 0 !important;
+}
+
+.field-list ul {
+    margin: 0;
+    padding-left: 1em;
+}
+
+.field-list p {
+    margin: 0;
+}
+
+.field-name {
+    -moz-hyphens: manual;
+    -ms-hyphens: manual;
+    -webkit-hyphens: manual;
+    hyphens: manual;
+}
+
+/* -- hlist styles ---------------------------------------------------------- */
+
+table.hlist {
+    margin: 1em 0;
+}
+
+table.hlist td {
+    vertical-align: top;
+}
+
+/* -- object description styles --------------------------------------------- */
+
+.sig {
+	font-family: 'Consolas', 'Menlo', 'DejaVu Sans Mono', 'Bitstream Vera Sans Mono', monospace;
+}
+
+.sig-name, code.descname {
+    background-color: transparent;
+    font-weight: bold;
+}
+
+.sig-name {
+	font-size: 1.1em;
+}
+
+code.descname {
+    font-size: 1.2em;
+}
+
+.sig-prename, code.descclassname {
+    background-color: transparent;
+}
+
+.optional {
+    font-size: 1.3em;
+}
+
+.sig-paren {
+    font-size: larger;
+}
+
+.sig-param.n {
+	font-style: italic;
+}
+
+/* C++ specific styling */
+
+.sig-inline.c-texpr,
+.sig-inline.cpp-texpr {
+	font-family: unset;
+}
+
+.sig.c   .k, .sig.c   .kt,
+.sig.cpp .k, .sig.cpp .kt {
+	color: #0033B3;
+}
+
+.sig.c   .m,
+.sig.cpp .m {
+	color: #1750EB;
+}
+
+.sig.c   .s, .sig.c   .sc,
+.sig.cpp .s, .sig.cpp .sc {
+	color: #067D17;
+}
+
+
+/* -- other body styles ----------------------------------------------------- */
+
+ol.arabic {
+    list-style: decimal;
+}
+
+ol.loweralpha {
+    list-style: lower-alpha;
+}
+
+ol.upperalpha {
+    list-style: upper-alpha;
+}
+
+ol.lowerroman {
+    list-style: lower-roman;
+}
+
+ol.upperroman {
+    list-style: upper-roman;
+}
+
+:not(li) > ol > li:first-child > :first-child,
+:not(li) > ul > li:first-child > :first-child {
+    margin-top: 0px;
+}
+
+:not(li) > ol > li:last-child > :last-child,
+:not(li) > ul > li:last-child > :last-child {
+    margin-bottom: 0px;
+}
+
+ol.simple ol p,
+ol.simple ul p,
+ul.simple ol p,
+ul.simple ul p {
+    margin-top: 0;
+}
+
+ol.simple > li:not(:first-child) > p,
+ul.simple > li:not(:first-child) > p {
+    margin-top: 0;
+}
+
+ol.simple p,
+ul.simple p {
+    margin-bottom: 0;
+}
+
+aside.footnote > span,
+div.citation > span {
+    float: left;
+}
+aside.footnote > span:last-of-type,
+div.citation > span:last-of-type {
+  padding-right: 0.5em;
+}
+aside.footnote > p {
+  margin-left: 2em;
+}
+div.citation > p {
+  margin-left: 4em;
+}
+aside.footnote > p:last-of-type,
+div.citation > p:last-of-type {
+    margin-bottom: 0em;
+}
+aside.footnote > p:last-of-type:after,
+div.citation > p:last-of-type:after {
+    content: "";
+    clear: both;
+}
+
+dl.field-list {
+    display: grid;
+    grid-template-columns: fit-content(30%) auto;
+}
+
+dl.field-list > dt {
+    font-weight: bold;
+    word-break: break-word;
+    padding-left: 0.5em;
+    padding-right: 5px;
+}
+
+dl.field-list > dd {
+    padding-left: 0.5em;
+    margin-top: 0em;
+    margin-left: 0em;
+    margin-bottom: 0em;
+}
+
+dl {
+    margin-bottom: 15px;
+}
+
+dd > :first-child {
+    margin-top: 0px;
+}
+
+dd ul, dd table {
+    margin-bottom: 10px;
+}
+
+dd {
+    margin-top: 3px;
+    margin-bottom: 10px;
+    margin-left: 30px;
+}
+
+.sig dd {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
+.sig dl {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
+dl > dd:last-child,
+dl > dd:last-child > :last-child {
+    margin-bottom: 0;
+}
+
+dt:target, span.highlighted {
+    background-color: #fbe54e;
+}
+
+rect.highlighted {
+    fill: #fbe54e;
+}
+
+dl.glossary dt {
+    font-weight: bold;
+    font-size: 1.1em;
+}
+
+.versionmodified {
+    font-style: italic;
+}
+
+.system-message {
+    background-color: #fda;
+    padding: 5px;
+    border: 3px solid red;
+}
+
+.footnote:target  {
+    background-color: #ffa;
+}
+
+.line-block {
+    display: block;
+    margin-top: 1em;
+    margin-bottom: 1em;
+}
+
+.line-block .line-block {
+    margin-top: 0;
+    margin-bottom: 0;
+    margin-left: 1.5em;
+}
+
+.guilabel, .menuselection {
+    font-family: sans-serif;
+}
+
+.accelerator {
+    text-decoration: underline;
+}
+
+.classifier {
+    font-style: oblique;
+}
+
+.classifier:before {
+    font-style: normal;
+    margin: 0 0.5em;
+    content: ":";
+    display: inline-block;
+}
+
+abbr, acronym {
+    border-bottom: dotted 1px;
+    cursor: help;
+}
+
+/* -- code displays --------------------------------------------------------- */
+
+pre {
+    overflow: auto;
+    overflow-y: hidden;  /* fixes display issues on Chrome browsers */
+}
+
+pre, div[class*="highlight-"] {
+    clear: both;
+}
+
+span.pre {
+    -moz-hyphens: none;
+    -ms-hyphens: none;
+    -webkit-hyphens: none;
+    hyphens: none;
+    white-space: nowrap;
+}
+
+div[class*="highlight-"] {
+    margin: 1em 0;
+}
+
+td.linenos pre {
+    border: 0;
+    background-color: transparent;
+    color: #aaa;
+}
+
+table.highlighttable {
+    display: block;
+}
+
+table.highlighttable tbody {
+    display: block;
+}
+
+table.highlighttable tr {
+    display: flex;
+}
+
+table.highlighttable td {
+    margin: 0;
+    padding: 0;
+}
+
+table.highlighttable td.linenos {
+    padding-right: 0.5em;
+}
+
+table.highlighttable td.code {
+    flex: 1;
+    overflow: hidden;
+}
+
+.highlight .hll {
+    display: block;
+}
+
+div.highlight pre,
+table.highlighttable pre {
+    margin: 0;
+}
+
+div.code-block-caption + div {
+    margin-top: 0;
+}
+
+div.code-block-caption {
+    margin-top: 1em;
+    padding: 2px 5px;
+    font-size: small;
+}
+
+div.code-block-caption code {
+    background-color: transparent;
+}
+
+table.highlighttable td.linenos,
+span.linenos,
+div.highlight span.gp {  /* gp: Generic.Prompt */
+  user-select: none;
+  -webkit-user-select: text; /* Safari fallback only */
+  -webkit-user-select: none; /* Chrome/Safari */
+  -moz-user-select: none; /* Firefox */
+  -ms-user-select: none; /* IE10+ */
+}
+
+div.code-block-caption span.caption-number {
+    padding: 0.1em 0.3em;
+    font-style: italic;
+}
+
+div.code-block-caption span.caption-text {
+}
+
+div.literal-block-wrapper {
+    margin: 1em 0;
+}
+
+code.xref, a code {
+    background-color: transparent;
+    font-weight: bold;
+}
+
+h1 code, h2 code, h3 code, h4 code, h5 code, h6 code {
+    background-color: transparent;
+}
+
+.viewcode-link {
+    float: right;
+}
+
+.viewcode-back {
+    float: right;
+    font-family: sans-serif;
+}
+
+div.viewcode-block:target {
+    margin: -1px -10px;
+    padding: 0 10px;
+}
+
+/* -- math display ---------------------------------------------------------- */
+
+img.math {
+    vertical-align: middle;
+}
+
+div.body div.math p {
+    text-align: center;
+}
+
+span.eqno {
+    float: right;
+}
+
+span.eqno a.headerlink {
+    position: absolute;
+    z-index: 1;
+}
+
+div.math:hover a.headerlink {
+    visibility: visible;
+}
+
+/* -- printout stylesheet --------------------------------------------------- */
+
+@media print {
+    div.document,
+    div.documentwrapper,
+    div.bodywrapper {
+        margin: 0 !important;
+        width: 100%;
+    }
+
+    div.sphinxsidebar,
+    div.related,
+    div.footer,
+    #top-link {
+        display: none;
+    }
+}
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_static/check-solid.svg b/src/scitex/_sphinx_html/_static/check-solid.svg
new file mode 100644
index 000000000..92fad4b5c
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/check-solid.svg
@@ -0,0 +1,4 @@
+<svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-check" width="44" height="44" viewBox="0 0 24 24" stroke-width="2" stroke="#22863a" fill="none" stroke-linecap="round" stroke-linejoin="round">
+  <path stroke="none" d="M0 0h24v24H0z" fill="none"/>
+  <path d="M5 12l5 5l10 -10" />
+</svg>
diff --git a/src/scitex/_sphinx_html/_static/clipboard.min.js b/src/scitex/_sphinx_html/_static/clipboard.min.js
new file mode 100644
index 000000000..54b3c4638
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/clipboard.min.js
@@ -0,0 +1,7 @@
+/*!
+ * clipboard.js v2.0.8
+ * https://clipboardjs.com/
+ *
+ * Licensed MIT © Zeno Rocha
+ */
+!function(t,e){"object"==typeof exports&&"object"==typeof module?module.exports=e():"function"==typeof define&&define.amd?define([],e):"object"==typeof exports?exports.ClipboardJS=e():t.ClipboardJS=e()}(this,function(){return n={686:function(t,e,n){"use strict";n.d(e,{default:function(){return o}});var e=n(279),i=n.n(e),e=n(370),u=n.n(e),e=n(817),c=n.n(e);function a(t){try{return document.execCommand(t)}catch(t){return}}var f=function(t){t=c()(t);return a("cut"),t};var l=function(t){var e,n,o,r=1<arguments.length&&void 0!==arguments[1]?arguments[1]:{container:document.body},i="";return"string"==typeof t?(e=t,n="rtl"===document.documentElement.getAttribute("dir"),(o=document.createElement("textarea")).style.fontSize="12pt",o.style.border="0",o.style.padding="0",o.style.margin="0",o.style.position="absolute",o.style[n?"right":"left"]="-9999px",n=window.pageYOffset||document.documentElement.scrollTop,o.style.top="".concat(n,"px"),o.setAttribute("readonly",""),o.value=e,o=o,r.container.appendChild(o),i=c()(o),a("copy"),o.remove()):(i=c()(t),a("copy")),i};function r(t){return(r="function"==typeof Symbol&&"symbol"==typeof Symbol.iterator?function(t){return typeof t}:function(t){return t&&"function"==typeof Symbol&&t.constructor===Symbol&&t!==Symbol.prototype?"symbol":typeof t})(t)}var s=function(){var t=0<arguments.length&&void 0!==arguments[0]?arguments[0]:{},e=t.action,n=void 0===e?"copy":e,o=t.container,e=t.target,t=t.text;if("copy"!==n&&"cut"!==n)throw new Error('Invalid "action" value, use either "copy" or "cut"');if(void 0!==e){if(!e||"object"!==r(e)||1!==e.nodeType)throw new Error('Invalid "target" value, use a valid Element');if("copy"===n&&e.hasAttribute("disabled"))throw new Error('Invalid "target" attribute. 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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_static/copy-button.svg b/src/scitex/_sphinx_html/_static/copy-button.svg
new file mode 100644
index 000000000..9c074dae5
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/copy-button.svg
@@ -0,0 +1,5 @@
+<svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-copy" width="44" height="44" viewBox="0 0 24 24" stroke-width="1.5" stroke="#000000" fill="none" stroke-linecap="round" stroke-linejoin="round">
+  <path stroke="none" d="M0 0h24v24H0z" fill="none"/>
+  <rect x="8" y="8" width="12" height="12" rx="2" />
+  <path d="M16 8v-2a2 2 0 0 0 -2 -2h-8a2 2 0 0 0 -2 2v8a2 2 0 0 0 2 2h2" />
+</svg>
diff --git a/src/scitex/_sphinx_html/_static/copybutton.css b/src/scitex/_sphinx_html/_static/copybutton.css
new file mode 100644
index 000000000..f1916ec7d
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/copybutton.css
@@ -0,0 +1,94 @@
+/* Copy buttons */
+button.copybtn {
+    position: absolute;
+    display: flex;
+    top: .3em;
+    right: .3em;
+    width: 1.7em;
+    height: 1.7em;
+	opacity: 0;
+    transition: opacity 0.3s, border .3s, background-color .3s;
+    user-select: none;
+    padding: 0;
+    border: none;
+    outline: none;
+    border-radius: 0.4em;
+    /* The colors that GitHub uses */
+    border: #1b1f2426 1px solid;
+    background-color: #f6f8fa;
+    color: #57606a;
+}
+
+button.copybtn.success {
+    border-color: #22863a;
+    color: #22863a;
+}
+
+button.copybtn svg {
+    stroke: currentColor;
+    width: 1.5em;
+    height: 1.5em;
+    padding: 0.1em;
+}
+
+div.highlight  {
+    position: relative;
+}
+
+/* Show the copybutton */
+.highlight:hover button.copybtn, button.copybtn.success {
+	opacity: 1;
+}
+
+.highlight button.copybtn:hover {
+    background-color: rgb(235, 235, 235);
+}
+
+.highlight button.copybtn:active {
+    background-color: rgb(187, 187, 187);
+}
+
+/**
+ * A minimal CSS-only tooltip copied from:
+ *   https://codepen.io/mildrenben/pen/rVBrpK
+ *
+ * To use, write HTML like the following:
+ *
+ * <p class="o-tooltip--left" data-tooltip="Hey">Short</p>
+ */
+ .o-tooltip--left {
+  position: relative;
+ }
+
+ .o-tooltip--left:after {
+    opacity: 0;
+    visibility: hidden;
+    position: absolute;
+    content: attr(data-tooltip);
+    padding: .2em;
+    font-size: .8em;
+    left: -.2em;
+    background: grey;
+    color: white;
+    white-space: nowrap;
+    z-index: 2;
+    border-radius: 2px;
+    transform: translateX(-102%) translateY(0);
+    transition: opacity 0.2s cubic-bezier(0.64, 0.09, 0.08, 1), transform 0.2s cubic-bezier(0.64, 0.09, 0.08, 1);
+}
+
+.o-tooltip--left:hover:after {
+    display: block;
+    opacity: 1;
+    visibility: visible;
+    transform: translateX(-100%) translateY(0);
+    transition: opacity 0.2s cubic-bezier(0.64, 0.09, 0.08, 1), transform 0.2s cubic-bezier(0.64, 0.09, 0.08, 1);
+    transition-delay: .5s;
+}
+
+/* By default the copy button shouldn't show up when printing a page */
+@media print {
+    button.copybtn {
+        display: none;
+    }
+}
diff --git a/src/scitex/_sphinx_html/_static/copybutton.js b/src/scitex/_sphinx_html/_static/copybutton.js
new file mode 100644
index 000000000..2ea7ff3e2
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/copybutton.js
@@ -0,0 +1,248 @@
+// Localization support
+const messages = {
+  'en': {
+    'copy': 'Copy',
+    'copy_to_clipboard': 'Copy to clipboard',
+    'copy_success': 'Copied!',
+    'copy_failure': 'Failed to copy',
+  },
+  'es' : {
+    'copy': 'Copiar',
+    'copy_to_clipboard': 'Copiar al portapapeles',
+    'copy_success': '¡Copiado!',
+    'copy_failure': 'Error al copiar',
+  },
+  'de' : {
+    'copy': 'Kopieren',
+    'copy_to_clipboard': 'In die Zwischenablage kopieren',
+    'copy_success': 'Kopiert!',
+    'copy_failure': 'Fehler beim Kopieren',
+  },
+  'fr' : {
+    'copy': 'Copier',
+    'copy_to_clipboard': 'Copier dans le presse-papier',
+    'copy_success': 'Copié !',
+    'copy_failure': 'Échec de la copie',
+  },
+  'ru': {
+    'copy': 'Скопировать',
+    'copy_to_clipboard': 'Скопировать в буфер',
+    'copy_success': 'Скопировано!',
+    'copy_failure': 'Не удалось скопировать',
+  },
+  'zh-CN': {
+    'copy': '复制',
+    'copy_to_clipboard': '复制到剪贴板',
+    'copy_success': '复制成功!',
+    'copy_failure': '复制失败',
+  },
+  'it' : {
+    'copy': 'Copiare',
+    'copy_to_clipboard': 'Copiato negli appunti',
+    'copy_success': 'Copiato!',
+    'copy_failure': 'Errore durante la copia',
+  }
+}
+
+let locale = 'en'
+if( document.documentElement.lang !== undefined
+    && messages[document.documentElement.lang] !== undefined ) {
+  locale = document.documentElement.lang
+}
+
+let doc_url_root = DOCUMENTATION_OPTIONS.URL_ROOT;
+if (doc_url_root == '#') {
+    doc_url_root = '';
+}
+
+/**
+ * SVG files for our copy buttons
+ */
+let iconCheck = `<svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-check" width="44" height="44" viewBox="0 0 24 24" stroke-width="2" stroke="#22863a" fill="none" stroke-linecap="round" stroke-linejoin="round">
+  <title>${messages[locale]['copy_success']}</title>
+  <path stroke="none" d="M0 0h24v24H0z" fill="none"/>
+  <path d="M5 12l5 5l10 -10" />
+</svg>`
+
+// If the user specified their own SVG use that, otherwise use the default
+let iconCopy = ``;
+if (!iconCopy) {
+  iconCopy = `<svg xmlns="http://www.w3.org/2000/svg" class="icon icon-tabler icon-tabler-copy" width="44" height="44" viewBox="0 0 24 24" stroke-width="1.5" stroke="#000000" fill="none" stroke-linecap="round" stroke-linejoin="round">
+  <title>${messages[locale]['copy_to_clipboard']}</title>
+  <path stroke="none" d="M0 0h24v24H0z" fill="none"/>
+  <rect x="8" y="8" width="12" height="12" rx="2" />
+  <path d="M16 8v-2a2 2 0 0 0 -2 -2h-8a2 2 0 0 0 -2 2v8a2 2 0 0 0 2 2h2" />
+</svg>`
+}
+
+/**
+ * Set up copy/paste for code blocks
+ */
+
+const runWhenDOMLoaded = cb => {
+  if (document.readyState != 'loading') {
+    cb()
+  } else if (document.addEventListener) {
+    document.addEventListener('DOMContentLoaded', cb)
+  } else {
+    document.attachEvent('onreadystatechange', function() {
+      if (document.readyState == 'complete') cb()
+    })
+  }
+}
+
+const codeCellId = index => `codecell${index}`
+
+// Clears selected text since ClipboardJS will select the text when copying
+const clearSelection = () => {
+  if (window.getSelection) {
+    window.getSelection().removeAllRanges()
+  } else if (document.selection) {
+    document.selection.empty()
+  }
+}
+
+// Changes tooltip text for a moment, then changes it back
+// We want the timeout of our `success` class to be a bit shorter than the
+// tooltip and icon change, so that we can hide the icon before changing back.
+var timeoutIcon = 2000;
+var timeoutSuccessClass = 1500;
+
+const temporarilyChangeTooltip = (el, oldText, newText) => {
+  el.setAttribute('data-tooltip', newText)
+  el.classList.add('success')
+  // Remove success a little bit sooner than we change the tooltip
+  // So that we can use CSS to hide the copybutton first
+  setTimeout(() => el.classList.remove('success'), timeoutSuccessClass)
+  setTimeout(() => el.setAttribute('data-tooltip', oldText), timeoutIcon)
+}
+
+// Changes the copy button icon for two seconds, then changes it back
+const temporarilyChangeIcon = (el) => {
+  el.innerHTML = iconCheck;
+  setTimeout(() => {el.innerHTML = iconCopy}, timeoutIcon)
+}
+
+const addCopyButtonToCodeCells = () => {
+  // If ClipboardJS hasn't loaded, wait a bit and try again. This
+  // happens because we load ClipboardJS asynchronously.
+  if (window.ClipboardJS === undefined) {
+    setTimeout(addCopyButtonToCodeCells, 250)
+    return
+  }
+
+  // Add copybuttons to all of our code cells
+  const COPYBUTTON_SELECTOR = 'div.highlight pre';
+  const codeCells = document.querySelectorAll(COPYBUTTON_SELECTOR)
+  codeCells.forEach((codeCell, index) => {
+    const id = codeCellId(index)
+    codeCell.setAttribute('id', id)
+
+    const clipboardButton = id =>
+    `<button class="copybtn o-tooltip--left" data-tooltip="${messages[locale]['copy']}" data-clipboard-target="#${id}">
+      ${iconCopy}
+    </button>`
+    codeCell.insertAdjacentHTML('afterend', clipboardButton(id))
+  })
+
+function escapeRegExp(string) {
+    return string.replace(/[.*+?^${}()|[\]\\]/g, '\\$&'); // $& means the whole matched string
+}
+
+/**
+ * Removes excluded text from a Node.
+ *
+ * @param {Node} target Node to filter.
+ * @param {string} exclude CSS selector of nodes to exclude.
+ * @returns {DOMString} Text from `target` with text removed.
+ */
+function filterText(target, exclude) {
+    const clone = target.cloneNode(true);  // clone as to not modify the live DOM
+    if (exclude) {
+        // remove excluded nodes
+        clone.querySelectorAll(exclude).forEach(node => node.remove());
+    }
+    return clone.innerText;
+}
+
+// Callback when a copy button is clicked. Will be passed the node that was clicked
+// should then grab the text and replace pieces of text that shouldn't be used in output
+function formatCopyText(textContent, copybuttonPromptText, isRegexp = false, onlyCopyPromptLines = true, removePrompts = true, copyEmptyLines = true, lineContinuationChar = "", hereDocDelim = "") {
+    var regexp;
+    var match;
+
+    // Do we check for line continuation characters and "HERE-documents"?
+    var useLineCont = !!lineContinuationChar
+    var useHereDoc = !!hereDocDelim
+
+    // create regexp to capture prompt and remaining line
+    if (isRegexp) {
+        regexp = new RegExp('^(' + copybuttonPromptText + ')(.*)')
+    } else {
+        regexp = new RegExp('^(' + escapeRegExp(copybuttonPromptText) + ')(.*)')
+    }
+
+    const outputLines = [];
+    var promptFound = false;
+    var gotLineCont = false;
+    var gotHereDoc = false;
+    const lineGotPrompt = [];
+    for (const line of textContent.split('\n')) {
+        match = line.match(regexp)
+        if (match || gotLineCont || gotHereDoc) {
+            promptFound = regexp.test(line)
+            lineGotPrompt.push(promptFound)
+            if (removePrompts && promptFound) {
+                outputLines.push(match[2])
+            } else {
+                outputLines.push(line)
+            }
+            gotLineCont = line.endsWith(lineContinuationChar) & useLineCont
+            if (line.includes(hereDocDelim) & useHereDoc)
+                gotHereDoc = !gotHereDoc
+        } else if (!onlyCopyPromptLines) {
+            outputLines.push(line)
+        } else if (copyEmptyLines && line.trim() === '') {
+            outputLines.push(line)
+        }
+    }
+
+    // If no lines with the prompt were found then just use original lines
+    if (lineGotPrompt.some(v => v === true)) {
+        textContent = outputLines.join('\n');
+    }
+
+    // Remove a trailing newline to avoid auto-running when pasting
+    if (textContent.endsWith("\n")) {
+        textContent = textContent.slice(0, -1)
+    }
+    return textContent
+}
+
+
+var copyTargetText = (trigger) => {
+  var target = document.querySelector(trigger.attributes['data-clipboard-target'].value);
+
+  // get filtered text
+  let exclude = '.linenos';
+
+  let text = filterText(target, exclude);
+  return formatCopyText(text, '', false, true, true, true, '', '')
+}
+
+  // Initialize with a callback so we can modify the text before copy
+  const clipboard = new ClipboardJS('.copybtn', {text: copyTargetText})
+
+  // Update UI with error/success messages
+  clipboard.on('success', event => {
+    clearSelection()
+    temporarilyChangeTooltip(event.trigger, messages[locale]['copy'], messages[locale]['copy_success'])
+    temporarilyChangeIcon(event.trigger)
+  })
+
+  clipboard.on('error', event => {
+    temporarilyChangeTooltip(event.trigger, messages[locale]['copy'], messages[locale]['copy_failure'])
+  })
+}
+
+runWhenDOMLoaded(addCopyButtonToCodeCells)
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_static/copybutton_funcs.js b/src/scitex/_sphinx_html/_static/copybutton_funcs.js
new file mode 100644
index 000000000..dbe1aaad7
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/copybutton_funcs.js
@@ -0,0 +1,73 @@
+function escapeRegExp(string) {
+    return string.replace(/[.*+?^${}()|[\]\\]/g, '\\$&'); // $& means the whole matched string
+}
+
+/**
+ * Removes excluded text from a Node.
+ *
+ * @param {Node} target Node to filter.
+ * @param {string} exclude CSS selector of nodes to exclude.
+ * @returns {DOMString} Text from `target` with text removed.
+ */
+export function filterText(target, exclude) {
+    const clone = target.cloneNode(true);  // clone as to not modify the live DOM
+    if (exclude) {
+        // remove excluded nodes
+        clone.querySelectorAll(exclude).forEach(node => node.remove());
+    }
+    return clone.innerText;
+}
+
+// Callback when a copy button is clicked. Will be passed the node that was clicked
+// should then grab the text and replace pieces of text that shouldn't be used in output
+export function formatCopyText(textContent, copybuttonPromptText, isRegexp = false, onlyCopyPromptLines = true, removePrompts = true, copyEmptyLines = true, lineContinuationChar = "", hereDocDelim = "") {
+    var regexp;
+    var match;
+
+    // Do we check for line continuation characters and "HERE-documents"?
+    var useLineCont = !!lineContinuationChar
+    var useHereDoc = !!hereDocDelim
+
+    // create regexp to capture prompt and remaining line
+    if (isRegexp) {
+        regexp = new RegExp('^(' + copybuttonPromptText + ')(.*)')
+    } else {
+        regexp = new RegExp('^(' + escapeRegExp(copybuttonPromptText) + ')(.*)')
+    }
+
+    const outputLines = [];
+    var promptFound = false;
+    var gotLineCont = false;
+    var gotHereDoc = false;
+    const lineGotPrompt = [];
+    for (const line of textContent.split('\n')) {
+        match = line.match(regexp)
+        if (match || gotLineCont || gotHereDoc) {
+            promptFound = regexp.test(line)
+            lineGotPrompt.push(promptFound)
+            if (removePrompts && promptFound) {
+                outputLines.push(match[2])
+            } else {
+                outputLines.push(line)
+            }
+            gotLineCont = line.endsWith(lineContinuationChar) & useLineCont
+            if (line.includes(hereDocDelim) & useHereDoc)
+                gotHereDoc = !gotHereDoc
+        } else if (!onlyCopyPromptLines) {
+            outputLines.push(line)
+        } else if (copyEmptyLines && line.trim() === '') {
+            outputLines.push(line)
+        }
+    }
+
+    // If no lines with the prompt were found then just use original lines
+    if (lineGotPrompt.some(v => v === true)) {
+        textContent = outputLines.join('\n');
+    }
+
+    // Remove a trailing newline to avoid auto-running when pasting
+    if (textContent.endsWith("\n")) {
+        textContent = textContent.slice(0, -1)
+    }
+    return textContent
+}
diff --git a/src/scitex/_sphinx_html/_static/css/badge_only.css b/src/scitex/_sphinx_html/_static/css/badge_only.css
new file mode 100644
index 000000000..88ba55b96
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/css/badge_only.css
@@ -0,0 +1 @@
+.clearfix{*zoom:1}.clearfix:after,.clearfix:before{display:table;content:""}.clearfix:after{clear:both}@font-face{font-family:FontAwesome;font-style:normal;font-weight:400;src:url(fonts/fontawesome-webfont.eot?674f50d287a8c48dc19ba404d20fe713?#iefix) format("embedded-opentype"),url(fonts/fontawesome-webfont.woff2?af7ae505a9eed503f8b8e6982036873e) format("woff2"),url(fonts/fontawesome-webfont.woff?fee66e712a8a08eef5805a46892932ad) format("woff"),url(fonts/fontawesome-webfont.ttf?b06871f281fee6b241d60582ae9369b9) format("truetype"),url(fonts/fontawesome-webfont.svg?912ec66d7572ff821749319396470bde#FontAwesome) format("svg")}.fa:before{font-family:FontAwesome;font-style:normal;font-weight:400;line-height:1}.fa:before,a .fa{text-decoration:inherit}.fa:before,a .fa,li .fa{display:inline-block}li .fa-large:before{width:1.875em}ul.fas{list-style-type:none;margin-left:2em;text-indent:-.8em}ul.fas li .fa{width:.8em}ul.fas li .fa-large:before{vertical-align:baseline}.fa-book:before,.icon-book:before{content:"\f02d"}.fa-caret-down:before,.icon-caret-down:before{content:"\f0d7"}.fa-caret-up:before,.icon-caret-up:before{content:"\f0d8"}.fa-caret-left:before,.icon-caret-left:before{content:"\f0d9"}.fa-caret-right:before,.icon-caret-right:before{content:"\f0da"}.rst-versions{position:fixed;bottom:0;left:0;width:300px;color:#fcfcfc;background:#1f1d1d;font-family:Lato,proxima-nova,Helvetica Neue,Arial,sans-serif;z-index:400}.rst-versions a{color:#2980b9;text-decoration:none}.rst-versions .rst-badge-small{display:none}.rst-versions .rst-current-version{padding:12px;background-color:#272525;display:block;text-align:right;font-size:90%;cursor:pointer;color:#27ae60}.rst-versions .rst-current-version:after{clear:both;content:"";display:block}.rst-versions .rst-current-version .fa{color:#fcfcfc}.rst-versions .rst-current-version .fa-book,.rst-versions .rst-current-version .icon-book{float:left}.rst-versions .rst-current-version.rst-out-of-date{background-color:#e74c3c;color:#fff}.rst-versions .rst-current-version.rst-active-old-version{background-color:#f1c40f;color:#000}.rst-versions.shift-up{height:auto;max-height:100%;overflow-y:scroll}.rst-versions.shift-up .rst-other-versions{display:block}.rst-versions .rst-other-versions{font-size:90%;padding:12px;color:grey;display:none}.rst-versions .rst-other-versions hr{display:block;height:1px;border:0;margin:20px 0;padding:0;border-top:1px solid #413d3d}.rst-versions .rst-other-versions dd{display:inline-block;margin:0}.rst-versions .rst-other-versions dd a{display:inline-block;padding:6px;color:#fcfcfc}.rst-versions .rst-other-versions .rtd-current-item{font-weight:700}.rst-versions.rst-badge{width:auto;bottom:20px;right:20px;left:auto;border:none;max-width:300px;max-height:90%}.rst-versions.rst-badge .fa-book,.rst-versions.rst-badge .icon-book{float:none;line-height:30px}.rst-versions.rst-badge.shift-up .rst-current-version{text-align:right}.rst-versions.rst-badge.shift-up .rst-current-version .fa-book,.rst-versions.rst-badge.shift-up .rst-current-version .icon-book{float:left}.rst-versions.rst-badge>.rst-current-version{width:auto;height:30px;line-height:30px;padding:0 6px;display:block;text-align:center}@media screen and (max-width:768px){.rst-versions{width:85%;display:none}.rst-versions.shift{display:block}}#flyout-search-form{padding:6px}
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_static/css/fonts/Roboto-Slab-Regular.woff b/src/scitex/_sphinx_html/_static/css/fonts/Roboto-Slab-Regular.woff
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new file mode 100644
index 000000000..855c845e5
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/css/fonts/fontawesome-webfont.svg
@@ -0,0 +1,2671 @@
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diff --git a/src/scitex/_sphinx_html/_static/css/theme.css b/src/scitex/_sphinx_html/_static/css/theme.css
new file mode 100644
index 000000000..a88467c1b
--- /dev/null
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_static/doctools.js b/src/scitex/_sphinx_html/_static/doctools.js
new file mode 100644
index 000000000..807cdb176
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/doctools.js
@@ -0,0 +1,150 @@
+/*
+ * Base JavaScript utilities for all Sphinx HTML documentation.
+ */
+"use strict";
+
+const BLACKLISTED_KEY_CONTROL_ELEMENTS = new Set([
+  "TEXTAREA",
+  "INPUT",
+  "SELECT",
+  "BUTTON",
+]);
+
+const _ready = (callback) => {
+  if (document.readyState !== "loading") {
+    callback();
+  } else {
+    document.addEventListener("DOMContentLoaded", callback);
+  }
+};
+
+/**
+ * Small JavaScript module for the documentation.
+ */
+const Documentation = {
+  init: () => {
+    Documentation.initDomainIndexTable();
+    Documentation.initOnKeyListeners();
+  },
+
+  /**
+   * i18n support
+   */
+  TRANSLATIONS: {},
+  PLURAL_EXPR: (n) => (n === 1 ? 0 : 1),
+  LOCALE: "unknown",
+
+  // gettext and ngettext don't access this so that the functions
+  // can safely bound to a different name (_ = Documentation.gettext)
+  gettext: (string) => {
+    const translated = Documentation.TRANSLATIONS[string];
+    switch (typeof translated) {
+      case "undefined":
+        return string; // no translation
+      case "string":
+        return translated; // translation exists
+      default:
+        return translated[0]; // (singular, plural) translation tuple exists
+    }
+  },
+
+  ngettext: (singular, plural, n) => {
+    const translated = Documentation.TRANSLATIONS[singular];
+    if (typeof translated !== "undefined")
+      return translated[Documentation.PLURAL_EXPR(n)];
+    return n === 1 ? singular : plural;
+  },
+
+  addTranslations: (catalog) => {
+    Object.assign(Documentation.TRANSLATIONS, catalog.messages);
+    Documentation.PLURAL_EXPR = new Function(
+      "n",
+      `return (${catalog.plural_expr})`,
+    );
+    Documentation.LOCALE = catalog.locale;
+  },
+
+  /**
+   * helper function to focus on search bar
+   */
+  focusSearchBar: () => {
+    document.querySelectorAll("input[name=q]")[0]?.focus();
+  },
+
+  /**
+   * Initialise the domain index toggle buttons
+   */
+  initDomainIndexTable: () => {
+    const toggler = (el) => {
+      const idNumber = el.id.substr(7);
+      const toggledRows = document.querySelectorAll(`tr.cg-${idNumber}`);
+      if (el.src.substr(-9) === "minus.png") {
+        el.src = `${el.src.substr(0, el.src.length - 9)}plus.png`;
+        toggledRows.forEach((el) => (el.style.display = "none"));
+      } else {
+        el.src = `${el.src.substr(0, el.src.length - 8)}minus.png`;
+        toggledRows.forEach((el) => (el.style.display = ""));
+      }
+    };
+
+    const togglerElements = document.querySelectorAll("img.toggler");
+    togglerElements.forEach((el) =>
+      el.addEventListener("click", (event) => toggler(event.currentTarget)),
+    );
+    togglerElements.forEach((el) => (el.style.display = ""));
+    if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) togglerElements.forEach(toggler);
+  },
+
+  initOnKeyListeners: () => {
+    // only install a listener if it is really needed
+    if (
+      !DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS
+      && !DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS
+    )
+      return;
+
+    document.addEventListener("keydown", (event) => {
+      // bail for input elements
+      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName))
+        return;
+      // bail with special keys
+      if (event.altKey || event.ctrlKey || event.metaKey) return;
+
+      if (!event.shiftKey) {
+        switch (event.key) {
+          case "ArrowLeft":
+            if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) break;
+
+            const prevLink = document.querySelector('link[rel="prev"]');
+            if (prevLink && prevLink.href) {
+              window.location.href = prevLink.href;
+              event.preventDefault();
+            }
+            break;
+          case "ArrowRight":
+            if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) break;
+
+            const nextLink = document.querySelector('link[rel="next"]');
+            if (nextLink && nextLink.href) {
+              window.location.href = nextLink.href;
+              event.preventDefault();
+            }
+            break;
+        }
+      }
+
+      // some keyboard layouts may need Shift to get /
+      switch (event.key) {
+        case "/":
+          if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) break;
+          Documentation.focusSearchBar();
+          event.preventDefault();
+      }
+    });
+  },
+};
+
+// quick alias for translations
+const _ = Documentation.gettext;
+
+_ready(Documentation.init);
diff --git a/src/scitex/_sphinx_html/_static/documentation_options.js b/src/scitex/_sphinx_html/_static/documentation_options.js
new file mode 100644
index 000000000..976fa38d6
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/documentation_options.js
@@ -0,0 +1,13 @@
+const DOCUMENTATION_OPTIONS = {
+    VERSION: '0.0.0',
+    LANGUAGE: 'en',
+    COLLAPSE_INDEX: false,
+    BUILDER: 'html',
+    FILE_SUFFIX: '.html',
+    LINK_SUFFIX: '.html',
+    HAS_SOURCE: true,
+    SOURCELINK_SUFFIX: '.txt',
+    NAVIGATION_WITH_KEYS: false,
+    SHOW_SEARCH_SUMMARY: true,
+    ENABLE_SEARCH_SHORTCUTS: true,
+};
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_static/english-stemmer.js b/src/scitex/_sphinx_html/_static/english-stemmer.js
new file mode 100644
index 000000000..056760ee8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/english-stemmer.js
@@ -0,0 +1,1066 @@
+// Generated from english.sbl by Snowball 3.0.1 - https://snowballstem.org/
+
+/**@constructor*/
+var EnglishStemmer = function() {
+    var base = new BaseStemmer();
+
+    /** @const */ var a_0 = [
+        ["arsen", -1, -1],
+        ["commun", -1, -1],
+        ["emerg", -1, -1],
+        ["gener", -1, -1],
+        ["later", -1, -1],
+        ["organ", -1, -1],
+        ["past", -1, -1],
+        ["univers", -1, -1]
+    ];
+
+    /** @const */ var a_1 = [
+        ["'", -1, 1],
+        ["'s'", 0, 1],
+        ["'s", -1, 1]
+    ];
+
+    /** @const */ var a_2 = [
+        ["ied", -1, 2],
+        ["s", -1, 3],
+        ["ies", 1, 2],
+        ["sses", 1, 1],
+        ["ss", 1, -1],
+        ["us", 1, -1]
+    ];
+
+    /** @const */ var a_3 = [
+        ["succ", -1, 1],
+        ["proc", -1, 1],
+        ["exc", -1, 1]
+    ];
+
+    /** @const */ var a_4 = [
+        ["even", -1, 2],
+        ["cann", -1, 2],
+        ["inn", -1, 2],
+        ["earr", -1, 2],
+        ["herr", -1, 2],
+        ["out", -1, 2],
+        ["y", -1, 1]
+    ];
+
+    /** @const */ var a_5 = [
+        ["", -1, -1],
+        ["ed", 0, 2],
+        ["eed", 1, 1],
+        ["ing", 0, 3],
+        ["edly", 0, 2],
+        ["eedly", 4, 1],
+        ["ingly", 0, 2]
+    ];
+
+    /** @const */ var a_6 = [
+        ["", -1, 3],
+        ["bb", 0, 2],
+        ["dd", 0, 2],
+        ["ff", 0, 2],
+        ["gg", 0, 2],
+        ["bl", 0, 1],
+        ["mm", 0, 2],
+        ["nn", 0, 2],
+        ["pp", 0, 2],
+        ["rr", 0, 2],
+        ["at", 0, 1],
+        ["tt", 0, 2],
+        ["iz", 0, 1]
+    ];
+
+    /** @const */ var a_7 = [
+        ["anci", -1, 3],
+        ["enci", -1, 2],
+        ["ogi", -1, 14],
+        ["li", -1, 16],
+        ["bli", 3, 12],
+        ["abli", 4, 4],
+        ["alli", 3, 8],
+        ["fulli", 3, 9],
+        ["lessli", 3, 15],
+        ["ousli", 3, 10],
+        ["entli", 3, 5],
+        ["aliti", -1, 8],
+        ["biliti", -1, 12],
+        ["iviti", -1, 11],
+        ["tional", -1, 1],
+        ["ational", 14, 7],
+        ["alism", -1, 8],
+        ["ation", -1, 7],
+        ["ization", 17, 6],
+        ["izer", -1, 6],
+        ["ator", -1, 7],
+        ["iveness", -1, 11],
+        ["fulness", -1, 9],
+        ["ousness", -1, 10],
+        ["ogist", -1, 13]
+    ];
+
+    /** @const */ var a_8 = [
+        ["icate", -1, 4],
+        ["ative", -1, 6],
+        ["alize", -1, 3],
+        ["iciti", -1, 4],
+        ["ical", -1, 4],
+        ["tional", -1, 1],
+        ["ational", 5, 2],
+        ["ful", -1, 5],
+        ["ness", -1, 5]
+    ];
+
+    /** @const */ var a_9 = [
+        ["ic", -1, 1],
+        ["ance", -1, 1],
+        ["ence", -1, 1],
+        ["able", -1, 1],
+        ["ible", -1, 1],
+        ["ate", -1, 1],
+        ["ive", -1, 1],
+        ["ize", -1, 1],
+        ["iti", -1, 1],
+        ["al", -1, 1],
+        ["ism", -1, 1],
+        ["ion", -1, 2],
+        ["er", -1, 1],
+        ["ous", -1, 1],
+        ["ant", -1, 1],
+        ["ent", -1, 1],
+        ["ment", 15, 1],
+        ["ement", 16, 1]
+    ];
+
+    /** @const */ var a_10 = [
+        ["e", -1, 1],
+        ["l", -1, 2]
+    ];
+
+    /** @const */ var a_11 = [
+        ["andes", -1, -1],
+        ["atlas", -1, -1],
+        ["bias", -1, -1],
+        ["cosmos", -1, -1],
+        ["early", -1, 5],
+        ["gently", -1, 3],
+        ["howe", -1, -1],
+        ["idly", -1, 2],
+        ["news", -1, -1],
+        ["only", -1, 6],
+        ["singly", -1, 7],
+        ["skies", -1, 1],
+        ["sky", -1, -1],
+        ["ugly", -1, 4]
+    ];
+
+    /** @const */ var /** Array<int> */ g_aeo = [17, 64];
+
+    /** @const */ var /** Array<int> */ g_v = [17, 65, 16, 1];
+
+    /** @const */ var /** Array<int> */ g_v_WXY = [1, 17, 65, 208, 1];
+
+    /** @const */ var /** Array<int> */ g_valid_LI = [55, 141, 2];
+
+    var /** boolean */ B_Y_found = false;
+    var /** number */ I_p2 = 0;
+    var /** number */ I_p1 = 0;
+
+
+    /** @return {boolean} */
+    function r_prelude() {
+        B_Y_found = false;
+        /** @const */ var /** number */ v_1 = base.cursor;
+        lab0: {
+            base.bra = base.cursor;
+            if (!(base.eq_s("'")))
+            {
+                break lab0;
+            }
+            base.ket = base.cursor;
+            if (!base.slice_del())
+            {
+                return false;
+            }
+        }
+        base.cursor = v_1;
+        /** @const */ var /** number */ v_2 = base.cursor;
+        lab1: {
+            base.bra = base.cursor;
+            if (!(base.eq_s("y")))
+            {
+                break lab1;
+            }
+            base.ket = base.cursor;
+            if (!base.slice_from("Y"))
+            {
+                return false;
+            }
+            B_Y_found = true;
+        }
+        base.cursor = v_2;
+        /** @const */ var /** number */ v_3 = base.cursor;
+        lab2: {
+            while(true)
+            {
+                /** @const */ var /** number */ v_4 = base.cursor;
+                lab3: {
+                    golab4: while(true)
+                    {
+                        /** @const */ var /** number */ v_5 = base.cursor;
+                        lab5: {
+                            if (!(base.in_grouping(g_v, 97, 121)))
+                            {
+                                break lab5;
+                            }
+                            base.bra = base.cursor;
+                            if (!(base.eq_s("y")))
+                            {
+                                break lab5;
+                            }
+                            base.ket = base.cursor;
+                            base.cursor = v_5;
+                            break golab4;
+                        }
+                        base.cursor = v_5;
+                        if (base.cursor >= base.limit)
+                        {
+                            break lab3;
+                        }
+                        base.cursor++;
+                    }
+                    if (!base.slice_from("Y"))
+                    {
+                        return false;
+                    }
+                    B_Y_found = true;
+                    continue;
+                }
+                base.cursor = v_4;
+                break;
+            }
+        }
+        base.cursor = v_3;
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_mark_regions() {
+        I_p1 = base.limit;
+        I_p2 = base.limit;
+        /** @const */ var /** number */ v_1 = base.cursor;
+        lab0: {
+            lab1: {
+                /** @const */ var /** number */ v_2 = base.cursor;
+                lab2: {
+                    if (base.find_among(a_0) == 0)
+                    {
+                        break lab2;
+                    }
+                    break lab1;
+                }
+                base.cursor = v_2;
+                if (!base.go_out_grouping(g_v, 97, 121))
+                {
+                    break lab0;
+                }
+                base.cursor++;
+                if (!base.go_in_grouping(g_v, 97, 121))
+                {
+                    break lab0;
+                }
+                base.cursor++;
+            }
+            I_p1 = base.cursor;
+            if (!base.go_out_grouping(g_v, 97, 121))
+            {
+                break lab0;
+            }
+            base.cursor++;
+            if (!base.go_in_grouping(g_v, 97, 121))
+            {
+                break lab0;
+            }
+            base.cursor++;
+            I_p2 = base.cursor;
+        }
+        base.cursor = v_1;
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_shortv() {
+        lab0: {
+            /** @const */ var /** number */ v_1 = base.limit - base.cursor;
+            lab1: {
+                if (!(base.out_grouping_b(g_v_WXY, 89, 121)))
+                {
+                    break lab1;
+                }
+                if (!(base.in_grouping_b(g_v, 97, 121)))
+                {
+                    break lab1;
+                }
+                if (!(base.out_grouping_b(g_v, 97, 121)))
+                {
+                    break lab1;
+                }
+                break lab0;
+            }
+            base.cursor = base.limit - v_1;
+            lab2: {
+                if (!(base.out_grouping_b(g_v, 97, 121)))
+                {
+                    break lab2;
+                }
+                if (!(base.in_grouping_b(g_v, 97, 121)))
+                {
+                    break lab2;
+                }
+                if (base.cursor > base.limit_backward)
+                {
+                    break lab2;
+                }
+                break lab0;
+            }
+            base.cursor = base.limit - v_1;
+            if (!(base.eq_s_b("past")))
+            {
+                return false;
+            }
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_R1() {
+        return I_p1 <= base.cursor;
+    };
+
+    /** @return {boolean} */
+    function r_R2() {
+        return I_p2 <= base.cursor;
+    };
+
+    /** @return {boolean} */
+    function r_Step_1a() {
+        var /** number */ among_var;
+        /** @const */ var /** number */ v_1 = base.limit - base.cursor;
+        lab0: {
+            base.ket = base.cursor;
+            if (base.find_among_b(a_1) == 0)
+            {
+                base.cursor = base.limit - v_1;
+                break lab0;
+            }
+            base.bra = base.cursor;
+            if (!base.slice_del())
+            {
+                return false;
+            }
+        }
+        base.ket = base.cursor;
+        among_var = base.find_among_b(a_2);
+        if (among_var == 0)
+        {
+            return false;
+        }
+        base.bra = base.cursor;
+        switch (among_var) {
+            case 1:
+                if (!base.slice_from("ss"))
+                {
+                    return false;
+                }
+                break;
+            case 2:
+                lab1: {
+                    /** @const */ var /** number */ v_2 = base.limit - base.cursor;
+                    lab2: {
+                        {
+                            /** @const */ var /** number */ c1 = base.cursor - 2;
+                            if (c1 < base.limit_backward)
+                            {
+                                break lab2;
+                            }
+                            base.cursor = c1;
+                        }
+                        if (!base.slice_from("i"))
+                        {
+                            return false;
+                        }
+                        break lab1;
+                    }
+                    base.cursor = base.limit - v_2;
+                    if (!base.slice_from("ie"))
+                    {
+                        return false;
+                    }
+                }
+                break;
+            case 3:
+                if (base.cursor <= base.limit_backward)
+                {
+                    return false;
+                }
+                base.cursor--;
+                if (!base.go_out_grouping_b(g_v, 97, 121))
+                {
+                    return false;
+                }
+                base.cursor--;
+                if (!base.slice_del())
+                {
+                    return false;
+                }
+                break;
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_Step_1b() {
+        var /** number */ among_var;
+        base.ket = base.cursor;
+        among_var = base.find_among_b(a_5);
+        base.bra = base.cursor;
+        lab0: {
+            /** @const */ var /** number */ v_1 = base.limit - base.cursor;
+            lab1: {
+                switch (among_var) {
+                    case 1:
+                        /** @const */ var /** number */ v_2 = base.limit - base.cursor;
+                        lab2: {
+                            lab3: {
+                                /** @const */ var /** number */ v_3 = base.limit - base.cursor;
+                                lab4: {
+                                    if (base.find_among_b(a_3) == 0)
+                                    {
+                                        break lab4;
+                                    }
+                                    if (base.cursor > base.limit_backward)
+                                    {
+                                        break lab4;
+                                    }
+                                    break lab3;
+                                }
+                                base.cursor = base.limit - v_3;
+                                if (!r_R1())
+                                {
+                                    break lab2;
+                                }
+                                if (!base.slice_from("ee"))
+                                {
+                                    return false;
+                                }
+                            }
+                        }
+                        base.cursor = base.limit - v_2;
+                        break;
+                    case 2:
+                        break lab1;
+                    case 3:
+                        among_var = base.find_among_b(a_4);
+                        if (among_var == 0)
+                        {
+                            break lab1;
+                        }
+                        switch (among_var) {
+                            case 1:
+                                /** @const */ var /** number */ v_4 = base.limit - base.cursor;
+                                if (!(base.out_grouping_b(g_v, 97, 121)))
+                                {
+                                    break lab1;
+                                }
+                                if (base.cursor > base.limit_backward)
+                                {
+                                    break lab1;
+                                }
+                                base.cursor = base.limit - v_4;
+                                base.bra = base.cursor;
+                                if (!base.slice_from("ie"))
+                                {
+                                    return false;
+                                }
+                                break;
+                            case 2:
+                                if (base.cursor > base.limit_backward)
+                                {
+                                    break lab1;
+                                }
+                                break;
+                        }
+                        break;
+                }
+                break lab0;
+            }
+            base.cursor = base.limit - v_1;
+            /** @const */ var /** number */ v_5 = base.limit - base.cursor;
+            if (!base.go_out_grouping_b(g_v, 97, 121))
+            {
+                return false;
+            }
+            base.cursor--;
+            base.cursor = base.limit - v_5;
+            if (!base.slice_del())
+            {
+                return false;
+            }
+            base.ket = base.cursor;
+            base.bra = base.cursor;
+            /** @const */ var /** number */ v_6 = base.limit - base.cursor;
+            among_var = base.find_among_b(a_6);
+            switch (among_var) {
+                case 1:
+                    if (!base.slice_from("e"))
+                    {
+                        return false;
+                    }
+                    return false;
+                case 2:
+                    {
+                        /** @const */ var /** number */ v_7 = base.limit - base.cursor;
+                        lab5: {
+                            if (!(base.in_grouping_b(g_aeo, 97, 111)))
+                            {
+                                break lab5;
+                            }
+                            if (base.cursor > base.limit_backward)
+                            {
+                                break lab5;
+                            }
+                            return false;
+                        }
+                        base.cursor = base.limit - v_7;
+                    }
+                    break;
+                case 3:
+                    if (base.cursor != I_p1)
+                    {
+                        return false;
+                    }
+                    /** @const */ var /** number */ v_8 = base.limit - base.cursor;
+                    if (!r_shortv())
+                    {
+                        return false;
+                    }
+                    base.cursor = base.limit - v_8;
+                    if (!base.slice_from("e"))
+                    {
+                        return false;
+                    }
+                    return false;
+            }
+            base.cursor = base.limit - v_6;
+            base.ket = base.cursor;
+            if (base.cursor <= base.limit_backward)
+            {
+                return false;
+            }
+            base.cursor--;
+            base.bra = base.cursor;
+            if (!base.slice_del())
+            {
+                return false;
+            }
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_Step_1c() {
+        base.ket = base.cursor;
+        lab0: {
+            /** @const */ var /** number */ v_1 = base.limit - base.cursor;
+            lab1: {
+                if (!(base.eq_s_b("y")))
+                {
+                    break lab1;
+                }
+                break lab0;
+            }
+            base.cursor = base.limit - v_1;
+            if (!(base.eq_s_b("Y")))
+            {
+                return false;
+            }
+        }
+        base.bra = base.cursor;
+        if (!(base.out_grouping_b(g_v, 97, 121)))
+        {
+            return false;
+        }
+        lab2: {
+            if (base.cursor > base.limit_backward)
+            {
+                break lab2;
+            }
+            return false;
+        }
+        if (!base.slice_from("i"))
+        {
+            return false;
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_Step_2() {
+        var /** number */ among_var;
+        base.ket = base.cursor;
+        among_var = base.find_among_b(a_7);
+        if (among_var == 0)
+        {
+            return false;
+        }
+        base.bra = base.cursor;
+        if (!r_R1())
+        {
+            return false;
+        }
+        switch (among_var) {
+            case 1:
+                if (!base.slice_from("tion"))
+                {
+                    return false;
+                }
+                break;
+            case 2:
+                if (!base.slice_from("ence"))
+                {
+                    return false;
+                }
+                break;
+            case 3:
+                if (!base.slice_from("ance"))
+                {
+                    return false;
+                }
+                break;
+            case 4:
+                if (!base.slice_from("able"))
+                {
+                    return false;
+                }
+                break;
+            case 5:
+                if (!base.slice_from("ent"))
+                {
+                    return false;
+                }
+                break;
+            case 6:
+                if (!base.slice_from("ize"))
+                {
+                    return false;
+                }
+                break;
+            case 7:
+                if (!base.slice_from("ate"))
+                {
+                    return false;
+                }
+                break;
+            case 8:
+                if (!base.slice_from("al"))
+                {
+                    return false;
+                }
+                break;
+            case 9:
+                if (!base.slice_from("ful"))
+                {
+                    return false;
+                }
+                break;
+            case 10:
+                if (!base.slice_from("ous"))
+                {
+                    return false;
+                }
+                break;
+            case 11:
+                if (!base.slice_from("ive"))
+                {
+                    return false;
+                }
+                break;
+            case 12:
+                if (!base.slice_from("ble"))
+                {
+                    return false;
+                }
+                break;
+            case 13:
+                if (!base.slice_from("og"))
+                {
+                    return false;
+                }
+                break;
+            case 14:
+                if (!(base.eq_s_b("l")))
+                {
+                    return false;
+                }
+                if (!base.slice_from("og"))
+                {
+                    return false;
+                }
+                break;
+            case 15:
+                if (!base.slice_from("less"))
+                {
+                    return false;
+                }
+                break;
+            case 16:
+                if (!(base.in_grouping_b(g_valid_LI, 99, 116)))
+                {
+                    return false;
+                }
+                if (!base.slice_del())
+                {
+                    return false;
+                }
+                break;
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_Step_3() {
+        var /** number */ among_var;
+        base.ket = base.cursor;
+        among_var = base.find_among_b(a_8);
+        if (among_var == 0)
+        {
+            return false;
+        }
+        base.bra = base.cursor;
+        if (!r_R1())
+        {
+            return false;
+        }
+        switch (among_var) {
+            case 1:
+                if (!base.slice_from("tion"))
+                {
+                    return false;
+                }
+                break;
+            case 2:
+                if (!base.slice_from("ate"))
+                {
+                    return false;
+                }
+                break;
+            case 3:
+                if (!base.slice_from("al"))
+                {
+                    return false;
+                }
+                break;
+            case 4:
+                if (!base.slice_from("ic"))
+                {
+                    return false;
+                }
+                break;
+            case 5:
+                if (!base.slice_del())
+                {
+                    return false;
+                }
+                break;
+            case 6:
+                if (!r_R2())
+                {
+                    return false;
+                }
+                if (!base.slice_del())
+                {
+                    return false;
+                }
+                break;
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_Step_4() {
+        var /** number */ among_var;
+        base.ket = base.cursor;
+        among_var = base.find_among_b(a_9);
+        if (among_var == 0)
+        {
+            return false;
+        }
+        base.bra = base.cursor;
+        if (!r_R2())
+        {
+            return false;
+        }
+        switch (among_var) {
+            case 1:
+                if (!base.slice_del())
+                {
+                    return false;
+                }
+                break;
+            case 2:
+                lab0: {
+                    /** @const */ var /** number */ v_1 = base.limit - base.cursor;
+                    lab1: {
+                        if (!(base.eq_s_b("s")))
+                        {
+                            break lab1;
+                        }
+                        break lab0;
+                    }
+                    base.cursor = base.limit - v_1;
+                    if (!(base.eq_s_b("t")))
+                    {
+                        return false;
+                    }
+                }
+                if (!base.slice_del())
+                {
+                    return false;
+                }
+                break;
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_Step_5() {
+        var /** number */ among_var;
+        base.ket = base.cursor;
+        among_var = base.find_among_b(a_10);
+        if (among_var == 0)
+        {
+            return false;
+        }
+        base.bra = base.cursor;
+        switch (among_var) {
+            case 1:
+                lab0: {
+                    lab1: {
+                        if (!r_R2())
+                        {
+                            break lab1;
+                        }
+                        break lab0;
+                    }
+                    if (!r_R1())
+                    {
+                        return false;
+                    }
+                    {
+                        /** @const */ var /** number */ v_1 = base.limit - base.cursor;
+                        lab2: {
+                            if (!r_shortv())
+                            {
+                                break lab2;
+                            }
+                            return false;
+                        }
+                        base.cursor = base.limit - v_1;
+                    }
+                }
+                if (!base.slice_del())
+                {
+                    return false;
+                }
+                break;
+            case 2:
+                if (!r_R2())
+                {
+                    return false;
+                }
+                if (!(base.eq_s_b("l")))
+                {
+                    return false;
+                }
+                if (!base.slice_del())
+                {
+                    return false;
+                }
+                break;
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_exception1() {
+        var /** number */ among_var;
+        base.bra = base.cursor;
+        among_var = base.find_among(a_11);
+        if (among_var == 0)
+        {
+            return false;
+        }
+        base.ket = base.cursor;
+        if (base.cursor < base.limit)
+        {
+            return false;
+        }
+        switch (among_var) {
+            case 1:
+                if (!base.slice_from("sky"))
+                {
+                    return false;
+                }
+                break;
+            case 2:
+                if (!base.slice_from("idl"))
+                {
+                    return false;
+                }
+                break;
+            case 3:
+                if (!base.slice_from("gentl"))
+                {
+                    return false;
+                }
+                break;
+            case 4:
+                if (!base.slice_from("ugli"))
+                {
+                    return false;
+                }
+                break;
+            case 5:
+                if (!base.slice_from("earli"))
+                {
+                    return false;
+                }
+                break;
+            case 6:
+                if (!base.slice_from("onli"))
+                {
+                    return false;
+                }
+                break;
+            case 7:
+                if (!base.slice_from("singl"))
+                {
+                    return false;
+                }
+                break;
+        }
+        return true;
+    };
+
+    /** @return {boolean} */
+    function r_postlude() {
+        if (!B_Y_found)
+        {
+            return false;
+        }
+        while(true)
+        {
+            /** @const */ var /** number */ v_1 = base.cursor;
+            lab0: {
+                golab1: while(true)
+                {
+                    /** @const */ var /** number */ v_2 = base.cursor;
+                    lab2: {
+                        base.bra = base.cursor;
+                        if (!(base.eq_s("Y")))
+                        {
+                            break lab2;
+                        }
+                        base.ket = base.cursor;
+                        base.cursor = v_2;
+                        break golab1;
+                    }
+                    base.cursor = v_2;
+                    if (base.cursor >= base.limit)
+                    {
+                        break lab0;
+                    }
+                    base.cursor++;
+                }
+                if (!base.slice_from("y"))
+                {
+                    return false;
+                }
+                continue;
+            }
+            base.cursor = v_1;
+            break;
+        }
+        return true;
+    };
+
+    this.stem = /** @return {boolean} */ function() {
+        lab0: {
+            /** @const */ var /** number */ v_1 = base.cursor;
+            lab1: {
+                if (!r_exception1())
+                {
+                    break lab1;
+                }
+                break lab0;
+            }
+            base.cursor = v_1;
+            lab2: {
+                {
+                    /** @const */ var /** number */ v_2 = base.cursor;
+                    lab3: {
+                        {
+                            /** @const */ var /** number */ c1 = base.cursor + 3;
+                            if (c1 > base.limit)
+                            {
+                                break lab3;
+                            }
+                            base.cursor = c1;
+                        }
+                        break lab2;
+                    }
+                    base.cursor = v_2;
+                }
+                break lab0;
+            }
+            base.cursor = v_1;
+            r_prelude();
+            r_mark_regions();
+            base.limit_backward = base.cursor; base.cursor = base.limit;
+            /** @const */ var /** number */ v_3 = base.limit - base.cursor;
+            r_Step_1a();
+            base.cursor = base.limit - v_3;
+            /** @const */ var /** number */ v_4 = base.limit - base.cursor;
+            r_Step_1b();
+            base.cursor = base.limit - v_4;
+            /** @const */ var /** number */ v_5 = base.limit - base.cursor;
+            r_Step_1c();
+            base.cursor = base.limit - v_5;
+            /** @const */ var /** number */ v_6 = base.limit - base.cursor;
+            r_Step_2();
+            base.cursor = base.limit - v_6;
+            /** @const */ var /** number */ v_7 = base.limit - base.cursor;
+            r_Step_3();
+            base.cursor = base.limit - v_7;
+            /** @const */ var /** number */ v_8 = base.limit - base.cursor;
+            r_Step_4();
+            base.cursor = base.limit - v_8;
+            /** @const */ var /** number */ v_9 = base.limit - base.cursor;
+            r_Step_5();
+            base.cursor = base.limit - v_9;
+            base.cursor = base.limit_backward;
+            /** @const */ var /** number */ v_10 = base.cursor;
+            r_postlude();
+            base.cursor = v_10;
+        }
+        return true;
+    };
+
+    /**@return{string}*/
+    this['stemWord'] = function(/**string*/word) {
+        base.setCurrent(word);
+        this.stem();
+        return base.getCurrent();
+    };
+};
diff --git a/src/scitex/_sphinx_html/_static/fonts/Lato/lato-italic.eot b/src/scitex/_sphinx_html/_static/fonts/Lato/lato-italic.eot
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diff --git a/src/scitex/_sphinx_html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 b/src/scitex/_sphinx_html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2
new file mode 100644
index 0000000000000000000000000000000000000000..f2c76e5bda18a9842e24cd60d8787257da215ca7
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diff --git a/src/scitex/_sphinx_html/_static/gallery/area/fill_between.json b/src/scitex/_sphinx_html/_static/gallery/area/fill_between.json
new file mode 100644
index 000000000..64fba97ed
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/gallery/area/fill_between.json
@@ -0,0 +1,131 @@
+{
+    "metadata_version": "1.1.0",
+    "scitex": {
+        "version": "2.5.0",
+        "created_at": "2025-12-08T23:40:32.979662",
+        "created_with": "scitex.plt.subplots (mm-control)",
+        "mode": "publication",
+        "axes_size_mm": [
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+            28
+        ],
+        "position_in_grid": [
+            0,
+            0
+        ],
+        "style_mm": {
+            "axis_thickness_mm": 0.2,
+            "tick_length_mm": 0.8,
+            "tick_thickness_mm": 0.2,
+            "trace_thickness_mm": 0.2,
+            "marker_size_mm": 0.8,
+            "axis_font_size_pt": 7,
+            "tick_font_size_pt": 7,
+            "title_font_size_pt": 8,
+            "legend_font_size_pt": 6,
+            "label_pad_pt": 0.5,
+            "tick_pad_pt": 2.0,
+            "title_pad_pt": 1.0,
+            "font_family": "Arial",
+            "n_ticks": 4,
+            "font_family_requested": "Arial",
+            "font_family_actual": "Arial"
+        }
+    },
+    "matplotlib": {
+        "version": "3.10.3"
+    },
+    "id": "fill_between",
+    "dimensions": {
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+            68.0
+        ],
+        "figure_size_inch": [
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+            2.677165354330709
+        ],
+        "figure_size_px": [
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+            803
+        ],
+        "axes_size_mm": [
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+            27.999999999999993
+        ],
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+            1.1023622047244093
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+            330
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new file mode 100644
index 000000000..322ba9cdc
--- /dev/null
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index 000000000..cdc871d9e
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index 000000000..7878438d4
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index 000000000..7ef4100af
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index 000000000..6daec4513
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index 000000000..32e036dd2
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index 000000000..94e1694f8
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index 000000000..533ed473d
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index 000000000..f3128b1f9
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index 000000000..26e67cd31
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index 000000000..7f279613a
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--- /dev/null
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new file mode 100644
index 000000000..8f2012489
--- /dev/null
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new file mode 100644
index 000000000..f413347c4
--- /dev/null
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new file mode 100644
index 000000000..93f6e74a2
--- /dev/null
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index 000000000..88fe48886
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new file mode 100644
index 000000000..526d7234b
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/js/badge_only.js
@@ -0,0 +1 @@
+!function(e){var t={};function r(n){if(t[n])return t[n].exports;var o=t[n]={i:n,l:!1,exports:{}};return e[n].call(o.exports,o,o.exports,r),o.l=!0,o.exports}r.m=e,r.c=t,r.d=function(e,t,n){r.o(e,t)||Object.defineProperty(e,t,{enumerable:!0,get:n})},r.r=function(e){"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(e,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(e,"__esModule",{value:!0})},r.t=function(e,t){if(1&t&&(e=r(e)),8&t)return e;if(4&t&&"object"==typeof e&&e&&e.__esModule)return e;var n=Object.create(null);if(r.r(n),Object.defineProperty(n,"default",{enumerable:!0,value:e}),2&t&&"string"!=typeof e)for(var o in e)r.d(n,o,function(t){return e[t]}.bind(null,o));return n},r.n=function(e){var t=e&&e.__esModule?function(){return e.default}:function(){return e};return r.d(t,"a",t),t},r.o=function(e,t){return Object.prototype.hasOwnProperty.call(e,t)},r.p="",r(r.s=4)}({4:function(e,t,r){}});
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diff --git a/src/scitex/_sphinx_html/_static/js/theme.js b/src/scitex/_sphinx_html/_static/js/theme.js
new file mode 100644
index 000000000..1fddb6ee4
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/js/theme.js
@@ -0,0 +1 @@
+!function(n){var e={};function t(i){if(e[i])return e[i].exports;var o=e[i]={i:i,l:!1,exports:{}};return n[i].call(o.exports,o,o.exports,t),o.l=!0,o.exports}t.m=n,t.c=e,t.d=function(n,e,i){t.o(n,e)||Object.defineProperty(n,e,{enumerable:!0,get:i})},t.r=function(n){"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(n,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(n,"__esModule",{value:!0})},t.t=function(n,e){if(1&e&&(n=t(n)),8&e)return n;if(4&e&&"object"==typeof n&&n&&n.__esModule)return n;var i=Object.create(null);if(t.r(i),Object.defineProperty(i,"default",{enumerable:!0,value:n}),2&e&&"string"!=typeof n)for(var o in n)t.d(i,o,function(e){return n[e]}.bind(null,o));return i},t.n=function(n){var e=n&&n.__esModule?function(){return n.default}:function(){return n};return t.d(e,"a",e),e},t.o=function(n,e){return Object.prototype.hasOwnProperty.call(n,e)},t.p="",t(t.s=0)}([function(n,e,t){t(1),n.exports=t(3)},function(n,e,t){(function(){var e="undefined"!=typeof window?window.jQuery:t(2);n.exports.ThemeNav={navBar:null,win:null,winScroll:!1,winResize:!1,linkScroll:!1,winPosition:0,winHeight:null,docHeight:null,isRunning:!1,enable:function(n){var t=this;void 0===n&&(n=!0),t.isRunning||(t.isRunning=!0,e((function(e){t.init(e),t.reset(),t.win.on("hashchange",t.reset),n&&t.win.on("scroll",(function(){t.linkScroll||t.winScroll||(t.winScroll=!0,requestAnimationFrame((function(){t.onScroll()})))})),t.win.on("resize",(function(){t.winResize||(t.winResize=!0,requestAnimationFrame((function(){t.onResize()})))})),t.onResize()})))},enableSticky:function(){this.enable(!0)},init:function(n){n(document);var e=this;this.navBar=n("div.wy-side-scroll:first"),this.win=n(window),n(document).on("click","[data-toggle='wy-nav-top']",(function(){n("[data-toggle='wy-nav-shift']").toggleClass("shift"),n("[data-toggle='rst-versions']").toggleClass("shift")})).on("click",".wy-menu-vertical .current ul li a",(function(){var 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diff --git a/src/scitex/_sphinx_html/_static/js/versions.js b/src/scitex/_sphinx_html/_static/js/versions.js
new file mode 100644
index 000000000..4958195e0
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/js/versions.js
@@ -0,0 +1,228 @@
+const themeFlyoutDisplay = "hidden";
+const themeVersionSelector = true;
+const themeLanguageSelector = true;
+
+if (themeFlyoutDisplay === "attached") {
+  function renderLanguages(config) {
+    if (!config.projects.translations.length) {
+      return "";
+    }
+
+    // Insert the current language to the options on the selector
+    let languages = config.projects.translations.concat(config.projects.current);
+    languages = languages.sort((a, b) => a.language.name.localeCompare(b.language.name));
+
+    const languagesHTML = `
+      <dl>
+        <dt>Languages</dt>
+        ${languages
+          .map(
+            (translation) => `
+        <dd ${translation.slug == config.projects.current.slug ? 'class="rtd-current-item"' : ""}>
+          <a href="${translation.urls.documentation}">${translation.language.code}</a>
+        </dd>
+        `,
+          )
+          .join("\n")}
+      </dl>
+    `;
+    return languagesHTML;
+  }
+
+  function renderVersions(config) {
+    if (!config.versions.active.length) {
+      return "";
+    }
+    const versionsHTML = `
+      <dl>
+        <dt>Versions</dt>
+        ${config.versions.active
+          .map(
+            (version) => `
+        <dd ${version.slug === config.versions.current.slug ? 'class="rtd-current-item"' : ""}>
+          <a href="${version.urls.documentation}">${version.slug}</a>
+        </dd>
+        `,
+          )
+          .join("\n")}
+      </dl>
+    `;
+    return versionsHTML;
+  }
+
+  function renderDownloads(config) {
+    if (!Object.keys(config.versions.current.downloads).length) {
+      return "";
+    }
+    const downloadsNameDisplay = {
+      pdf: "PDF",
+      epub: "Epub",
+      htmlzip: "HTML",
+    };
+
+    const downloadsHTML = `
+      <dl>
+        <dt>Downloads</dt>
+        ${Object.entries(config.versions.current.downloads)
+          .map(
+            ([name, url]) => `
+          <dd>
+            <a href="${url}">${downloadsNameDisplay[name]}</a>
+          </dd>
+        `,
+          )
+          .join("\n")}
+      </dl>
+    `;
+    return downloadsHTML;
+  }
+
+  document.addEventListener("readthedocs-addons-data-ready", function (event) {
+    const config = event.detail.data();
+
+    const flyout = `
+      <div class="rst-versions" data-toggle="rst-versions" role="note">
+        <span class="rst-current-version" data-toggle="rst-current-version">
+          <span class="fa fa-book"> Read the Docs</span>
+          v: ${config.versions.current.slug}
+          <span class="fa fa-caret-down"></span>
+        </span>
+        <div class="rst-other-versions">
+          <div class="injected">
+            ${renderLanguages(config)}
+            ${renderVersions(config)}
+            ${renderDownloads(config)}
+            <dl>
+              <dt>On Read the Docs</dt>
+              <dd>
+                <a href="${config.projects.current.urls.home}">Project Home</a>
+              </dd>
+              <dd>
+                <a href="${config.projects.current.urls.builds}">Builds</a>
+              </dd>
+              <dd>
+                <a href="${config.projects.current.urls.downloads}">Downloads</a>
+              </dd>
+            </dl>
+            <dl>
+              <dt>Search</dt>
+              <dd>
+                <form id="flyout-search-form">
+                  <input
+                    class="wy-form"
+                    type="text"
+                    name="q"
+                    aria-label="Search docs"
+                    placeholder="Search docs"
+                    />
+                </form>
+              </dd>
+            </dl>
+            <hr />
+            <small>
+              <span>Hosted by <a href="https://about.readthedocs.org/?utm_source=&utm_content=flyout">Read the Docs</a></span>
+            </small>
+          </div>
+        </div>
+    `;
+
+    // Inject the generated flyout into the body HTML element.
+    document.body.insertAdjacentHTML("beforeend", flyout);
+
+    // Trigger the Read the Docs Addons Search modal when clicking on the "Search docs" input from inside the flyout.
+    document
+      .querySelector("#flyout-search-form")
+      .addEventListener("focusin", () => {
+        const event = new CustomEvent("readthedocs-search-show");
+        document.dispatchEvent(event);
+      });
+  })
+}
+
+if (themeLanguageSelector || themeVersionSelector) {
+  function onSelectorSwitch(event) {
+    const option = event.target.selectedIndex;
+    const item = event.target.options[option];
+    window.location.href = item.dataset.url;
+  }
+
+  document.addEventListener("readthedocs-addons-data-ready", function (event) {
+    const config = event.detail.data();
+
+    const versionSwitch = document.querySelector(
+      "div.switch-menus > div.version-switch",
+    );
+    if (themeVersionSelector) {
+      let versions = config.versions.active;
+      if (config.versions.current.hidden || config.versions.current.type === "external") {
+        versions.unshift(config.versions.current);
+      }
+      const versionSelect = `
+    <select>
+      ${versions
+        .map(
+          (version) => `
+        <option
+  value="${version.slug}"
+  ${config.versions.current.slug === version.slug ? 'selected="selected"' : ""}
+              data-url="${version.urls.documentation}">
+              ${version.slug}
+          </option>`,
+        )
+        .join("\n")}
+    </select>
+  `;
+
+      versionSwitch.innerHTML = versionSelect;
+      versionSwitch.firstElementChild.addEventListener("change", onSelectorSwitch);
+    }
+
+    const languageSwitch = document.querySelector(
+      "div.switch-menus > div.language-switch",
+    );
+
+    if (themeLanguageSelector) {
+      if (config.projects.translations.length) {
+        // Add the current language to the options on the selector
+        let languages = config.projects.translations.concat(
+          config.projects.current,
+        );
+        languages = languages.sort((a, b) =>
+          a.language.name.localeCompare(b.language.name),
+        );
+
+        const languageSelect = `
+      <select>
+        ${languages
+          .map(
+            (language) => `
+              <option
+                  value="${language.language.code}"
+                  ${config.projects.current.slug === language.slug ? 'selected="selected"' : ""}
+                  data-url="${language.urls.documentation}">
+                  ${language.language.name}
+              </option>`,
+          )
+          .join("\n")}
+       </select>
+    `;
+
+        languageSwitch.innerHTML = languageSelect;
+        languageSwitch.firstElementChild.addEventListener("change", onSelectorSwitch);
+      }
+      else {
+        languageSwitch.remove();
+      }
+    }
+  });
+}
+
+document.addEventListener("readthedocs-addons-data-ready", function (event) {
+  // Trigger the Read the Docs Addons Search modal when clicking on "Search docs" input from the topnav.
+  document
+    .querySelector("[role='search'] input")
+    .addEventListener("focusin", () => {
+      const event = new CustomEvent("readthedocs-search-show");
+      document.dispatchEvent(event);
+    });
+});
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_static/language_data.js b/src/scitex/_sphinx_html/_static/language_data.js
new file mode 100644
index 000000000..577678642
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/language_data.js
@@ -0,0 +1,13 @@
+/*
+ * This script contains the language-specific data used by searchtools.js,
+ * namely the set of stopwords, stemmer, scorer and splitter.
+ */
+
+const stopwords = new Set(["a", "about", "above", "after", "again", "against", "all", "am", "an", "and", "any", "are", "aren't", "as", "at", "be", "because", "been", "before", "being", "below", "between", "both", "but", "by", "can't", "cannot", "could", "couldn't", "did", "didn't", "do", "does", "doesn't", "doing", "don't", "down", "during", "each", "few", "for", "from", "further", "had", "hadn't", "has", "hasn't", "have", "haven't", "having", "he", "he'd", "he'll", "he's", "her", "here", "here's", "hers", "herself", "him", "himself", "his", "how", "how's", "i", "i'd", "i'll", "i'm", "i've", "if", "in", "into", "is", "isn't", "it", "it's", "its", "itself", "let's", "me", "more", "most", "mustn't", "my", "myself", "no", "nor", "not", "of", "off", "on", "once", "only", "or", "other", "ought", "our", "ours", "ourselves", "out", "over", "own", "same", "shan't", "she", "she'd", "she'll", "she's", "should", "shouldn't", "so", "some", "such", "than", "that", "that's", "the", "their", "theirs", "them", "themselves", "then", "there", "there's", "these", "they", "they'd", "they'll", "they're", "they've", "this", "those", "through", "to", "too", "under", "until", "up", "very", "was", "wasn't", "we", "we'd", "we'll", "we're", "we've", "were", "weren't", "what", "what's", "when", "when's", "where", "where's", "which", "while", "who", "who's", "whom", "why", "why's", "with", "won't", "would", "wouldn't", "you", "you'd", "you'll", "you're", "you've", "your", "yours", "yourself", "yourselves"]);
+window.stopwords = stopwords;  // Export to global scope
+
+
+/* Non-minified versions are copied as separate JavaScript files, if available */
+BaseStemmer=function(){this.current="",this.cursor=0,this.limit=0,this.limit_backward=0,this.bra=0,this.ket=0,this.setCurrent=function(t){this.current=t,this.cursor=0,this.limit=this.current.length,this.limit_backward=0,this.bra=this.cursor,this.ket=this.limit},this.getCurrent=function(){return this.current},this.copy_from=function(t){this.current=t.current,this.cursor=t.cursor,this.limit=t.limit,this.limit_backward=t.limit_backward,this.bra=t.bra,this.ket=t.ket},this.in_grouping=function(t,r,i){return!(this.cursor>=this.limit||i<(i=this.current.charCodeAt(this.cursor))||i<r||0==(t[(i-=r)>>>3]&1<<(7&i))||(this.cursor++,0))},this.go_in_grouping=function(t,r,i){for(;this.cursor<this.limit;){var s=this.current.charCodeAt(this.cursor);if(i<s||s<r)return!0;if(0==(t[(s-=r)>>>3]&1<<(7&s)))return!0;this.cursor++}return!1},this.in_grouping_b=function(t,r,i){return!(this.cursor<=this.limit_backward||i<(i=this.current.charCodeAt(this.cursor-1))||i<r||0==(t[(i-=r)>>>3]&1<<(7&i))||(this.cursor--,0))},this.go_in_grouping_b=function(t,r,i){for(;this.cursor>this.limit_backward;){var s=this.current.charCodeAt(this.cursor-1);if(i<s||s<r)return!0;if(0==(t[(s-=r)>>>3]&1<<(7&s)))return!0;this.cursor--}return!1},this.out_grouping=function(t,r,i){return!(this.cursor>=this.limit)&&(i<(i=this.current.charCodeAt(this.cursor))||i<r||0==(t[(i-=r)>>>3]&1<<(7&i)))&&(this.cursor++,!0)},this.go_out_grouping=function(t,r,i){for(;this.cursor<this.limit;){var s=this.current.charCodeAt(this.cursor);if(s<=i&&r<=s&&0!=(t[(s-=r)>>>3]&1<<(7&s)))return!0;this.cursor++}return!1},this.out_grouping_b=function(t,r,i){return!(this.cursor<=this.limit_backward)&&(i<(i=this.current.charCodeAt(this.cursor-1))||i<r||0==(t[(i-=r)>>>3]&1<<(7&i)))&&(this.cursor--,!0)},this.go_out_grouping_b=function(t,r,i){for(;this.cursor>this.limit_backward;){var s=this.current.charCodeAt(this.cursor-1);if(s<=i&&r<=s&&0!=(t[(s-=r)>>>3]&1<<(7&s)))return!0;this.cursor--}return!1},this.eq_s=function(t){return!(this.limit-this.cursor<t.length||this.current.slice(this.cursor,this.cursor+t.length)!=t||(this.cursor+=t.length,0))},this.eq_s_b=function(t){return!(this.cursor-this.limit_backward<t.length||this.current.slice(this.cursor-t.length,this.cursor)!=t||(this.cursor-=t.length,0))},this.find_among=function(t){for(var r=0,i=t.length,s=this.cursor,h=this.limit,e=0,n=0,c=!1;;){for(var u=r+(i-r>>>1),o=0,a=e<n?e:n,l=t[u],f=a;f<l[0].length;f++){if(s+a==h){o=-1;break}if(0!=(o=this.current.charCodeAt(s+a)-l[0].charCodeAt(f)))break;a++}if(o<0?(i=u,n=a):(r=u,e=a),i-r<=1){if(0<r)break;if(i==r)break;if(c)break;c=!0}}do{if(e>=(l=t[r])[0].length){if(this.cursor=s+l[0].length,l.length<4)return l[2];var g=l[3](this);if(this.cursor=s+l[0].length,g)return l[2]}}while(0<=(r=l[1]));return 0},this.find_among_b=function(t){for(var r=0,i=t.length,s=this.cursor,h=this.limit_backward,e=0,n=0,c=!1;;){for(var u,o=r+(i-r>>1),a=0,l=e<n?e:n,f=(u=t[o])[0].length-1-l;0<=f;f--){if(s-l==h){a=-1;break}if(0!=(a=this.current.charCodeAt(s-1-l)-u[0].charCodeAt(f)))break;l++}if(a<0?(i=o,n=l):(r=o,e=l),i-r<=1){if(0<r)break;if(i==r)break;if(c)break;c=!0}}do{if(e>=(u=t[r])[0].length){if(this.cursor=s-u[0].length,u.length<4)return u[2];var g=u[3](this);if(this.cursor=s-u[0].length,g)return u[2]}}while(0<=(r=u[1]));return 0},this.replace_s=function(t,r,i){var s=i.length-(r-t);return this.current=this.current.slice(0,t)+i+this.current.slice(r),this.limit+=s,this.cursor>=r?this.cursor+=s:this.cursor>t&&(this.cursor=t),s},this.slice_check=function(){return!(this.bra<0||this.bra>this.ket||this.ket>this.limit||this.limit>this.current.length)},this.slice_from=function(t){var r=!1;return this.slice_check()&&(this.replace_s(this.bra,this.ket,t),r=!0),r},this.slice_del=function(){return this.slice_from("")},this.insert=function(t,r,i){r=this.replace_s(t,r,i);t<=this.bra&&(this.bra+=r),t<=this.ket&&(this.ket+=r)},this.slice_to=function(){var t="";return t=this.slice_check()?this.current.slice(this.bra,this.ket):t},this.assign_to=function(){return this.current.slice(0,this.limit)}};
+var EnglishStemmer=function(){var a=new BaseStemmer,c=[["arsen",-1,-1],["commun",-1,-1],["emerg",-1,-1],["gener",-1,-1],["later",-1,-1],["organ",-1,-1],["past",-1,-1],["univers",-1,-1]],o=[["'",-1,1],["'s'",0,1],["'s",-1,1]],u=[["ied",-1,2],["s",-1,3],["ies",1,2],["sses",1,1],["ss",1,-1],["us",1,-1]],t=[["succ",-1,1],["proc",-1,1],["exc",-1,1]],l=[["even",-1,2],["cann",-1,2],["inn",-1,2],["earr",-1,2],["herr",-1,2],["out",-1,2],["y",-1,1]],n=[["",-1,-1],["ed",0,2],["eed",1,1],["ing",0,3],["edly",0,2],["eedly",4,1],["ingly",0,2]],f=[["",-1,3],["bb",0,2],["dd",0,2],["ff",0,2],["gg",0,2],["bl",0,1],["mm",0,2],["nn",0,2],["pp",0,2],["rr",0,2],["at",0,1],["tt",0,2],["iz",0,1]],_=[["anci",-1,3],["enci",-1,2],["ogi",-1,14],["li",-1,16],["bli",3,12],["abli",4,4],["alli",3,8],["fulli",3,9],["lessli",3,15],["ousli",3,10],["entli",3,5],["aliti",-1,8],["biliti",-1,12],["iviti",-1,11],["tional",-1,1],["ational",14,7],["alism",-1,8],["ation",-1,7],["ization",17,6],["izer",-1,6],["ator",-1,7],["iveness",-1,11],["fulness",-1,9],["ousness",-1,10],["ogist",-1,13]],m=[["icate",-1,4],["ative",-1,6],["alize",-1,3],["iciti",-1,4],["ical",-1,4],["tional",-1,1],["ational",5,2],["ful",-1,5],["ness",-1,5]],b=[["ic",-1,1],["ance",-1,1],["ence",-1,1],["able",-1,1],["ible",-1,1],["ate",-1,1],["ive",-1,1],["ize",-1,1],["iti",-1,1],["al",-1,1],["ism",-1,1],["ion",-1,2],["er",-1,1],["ous",-1,1],["ant",-1,1],["ent",-1,1],["ment",15,1],["ement",16,1]],k=[["e",-1,1],["l",-1,2]],g=[["andes",-1,-1],["atlas",-1,-1],["bias",-1,-1],["cosmos",-1,-1],["early",-1,5],["gently",-1,3],["howe",-1,-1],["idly",-1,2],["news",-1,-1],["only",-1,6],["singly",-1,7],["skies",-1,1],["sky",-1,-1],["ugly",-1,4]],d=[17,64],v=[17,65,16,1],i=[1,17,65,208,1],w=[55,141,2],p=!1,y=0,h=0;function q(){var r=a.limit-a.cursor;return!!(a.out_grouping_b(i,89,121)&&a.in_grouping_b(v,97,121)&&a.out_grouping_b(v,97,121)||(a.cursor=a.limit-r,a.out_grouping_b(v,97,121)&&a.in_grouping_b(v,97,121)&&!(a.cursor>a.limit_backward))||(a.cursor=a.limit-r,a.eq_s_b("past")))}function z(){return h<=a.cursor}function Y(){return y<=a.cursor}this.stem=function(){var r=a.cursor;if(!(()=>{var r;if(a.bra=a.cursor,0!=(r=a.find_among(g))&&(a.ket=a.cursor,!(a.cursor<a.limit))){switch(r){case 1:if(a.slice_from("sky"))break;return;case 2:if(a.slice_from("idl"))break;return;case 3:if(a.slice_from("gentl"))break;return;case 4:if(a.slice_from("ugli"))break;return;case 5:if(a.slice_from("earli"))break;return;case 6:if(a.slice_from("onli"))break;return;case 7:if(a.slice_from("singl"))break;return}return 1}})()){a.cursor=r;var i=a.cursor,e=a.cursor+3;if(e>a.limit)a.cursor=i;else{a.cursor=e,a.cursor=r,(()=>{p=!1;var r=a.cursor;if(a.bra=a.cursor,!a.eq_s("'")||(a.ket=a.cursor,a.slice_del())){a.cursor=r;r=a.cursor;if(a.bra=a.cursor,a.eq_s("y")){if(a.ket=a.cursor,!a.slice_from("Y"))return;p=!0}a.cursor=r;for(r=a.cursor;;){var i=a.cursor;r:{for(;;){var e=a.cursor;if(a.in_grouping(v,97,121)&&(a.bra=a.cursor,a.eq_s("y"))){a.ket=a.cursor,a.cursor=e;break}if(a.cursor=e,a.cursor>=a.limit)break r;a.cursor++}if(!a.slice_from("Y"))return;p=!0;continue}a.cursor=i;break}a.cursor=r}})(),h=a.limit,y=a.limit;i=a.cursor;r:{var s=a.cursor;if(0==a.find_among(c)){if(a.cursor=s,!a.go_out_grouping(v,97,121))break r;if(a.cursor++,!a.go_in_grouping(v,97,121))break r;a.cursor++}h=a.cursor,a.go_out_grouping(v,97,121)&&(a.cursor++,a.go_in_grouping(v,97,121))&&(a.cursor++,y=a.cursor)}a.cursor=i,a.limit_backward=a.cursor,a.cursor=a.limit;var e=a.limit-a.cursor,r=((()=>{var r=a.limit-a.cursor;if(a.ket=a.cursor,0==a.find_among_b(o))a.cursor=a.limit-r;else if(a.bra=a.cursor,!a.slice_del())return;if(a.ket=a.cursor,0!=(r=a.find_among_b(u)))switch(a.bra=a.cursor,r){case 1:if(a.slice_from("ss"))break;return;case 2:r:{var i=a.limit-a.cursor,e=a.cursor-2;if(!(e<a.limit_backward)){if(a.cursor=e,a.slice_from("i"))break r;return}if(a.cursor=a.limit-i,!a.slice_from("ie"))return}break;case 3:if(a.cursor<=a.limit_backward)return;if(a.cursor--,!a.go_out_grouping_b(v,97,121))return;if(a.cursor--,a.slice_del())break}})(),a.cursor=a.limit-e,a.limit-a.cursor),i=((()=>{a.ket=a.cursor,o=a.find_among_b(n),a.bra=a.cursor;r:{var r=a.limit-a.cursor;i:{switch(o){case 1:var i=a.limit-a.cursor;e:{var e=a.limit-a.cursor;if(0==a.find_among_b(t)||a.cursor>a.limit_backward){if(a.cursor=a.limit-e,!z())break e;if(!a.slice_from("ee"))return}}a.cursor=a.limit-i;break;case 2:break i;case 3:if(0==(o=a.find_among_b(l)))break i;switch(o){case 1:var s=a.limit-a.cursor;if(!a.out_grouping_b(v,97,121))break i;if(a.cursor>a.limit_backward)break i;if(a.cursor=a.limit-s,a.bra=a.cursor,a.slice_from("ie"))break;return;case 2:if(a.cursor>a.limit_backward)break i}}break r}a.cursor=a.limit-r;var c=a.limit-a.cursor;if(!a.go_out_grouping_b(v,97,121))return;if(a.cursor--,a.cursor=a.limit-c,!a.slice_del())return;a.ket=a.cursor,a.bra=a.cursor;var o,c=a.limit-a.cursor;switch(o=a.find_among_b(f)){case 1:return a.slice_from("e");case 2:var u=a.limit-a.cursor;if(a.in_grouping_b(d,97,111)&&!(a.cursor>a.limit_backward))return;a.cursor=a.limit-u;break;case 3:return a.cursor!=h||(u=a.limit-a.cursor,q()&&(a.cursor=a.limit-u,a.slice_from("e")))}if(a.cursor=a.limit-c,a.ket=a.cursor,a.cursor<=a.limit_backward)return;if(a.cursor--,a.bra=a.cursor,!a.slice_del())return}})(),a.cursor=a.limit-r,a.limit-a.cursor),r=(a.ket=a.cursor,e=a.limit-a.cursor,(a.eq_s_b("y")||(a.cursor=a.limit-e,a.eq_s_b("Y")))&&(a.bra=a.cursor,a.out_grouping_b(v,97,121))&&a.cursor>a.limit_backward&&a.slice_from("i"),a.cursor=a.limit-i,a.limit-a.cursor),e=((()=>{var r;if(a.ket=a.cursor,0!=(r=a.find_among_b(_))&&(a.bra=a.cursor,z()))switch(r){case 1:if(a.slice_from("tion"))break;return;case 2:if(a.slice_from("ence"))break;return;case 3:if(a.slice_from("ance"))break;return;case 4:if(a.slice_from("able"))break;return;case 5:if(a.slice_from("ent"))break;return;case 6:if(a.slice_from("ize"))break;return;case 7:if(a.slice_from("ate"))break;return;case 8:if(a.slice_from("al"))break;return;case 9:if(a.slice_from("ful"))break;return;case 10:if(a.slice_from("ous"))break;return;case 11:if(a.slice_from("ive"))break;return;case 12:if(a.slice_from("ble"))break;return;case 13:if(a.slice_from("og"))break;return;case 14:if(!a.eq_s_b("l"))return;if(a.slice_from("og"))break;return;case 15:if(a.slice_from("less"))break;return;case 16:if(!a.in_grouping_b(w,99,116))return;if(a.slice_del())break}})(),a.cursor=a.limit-r,a.limit-a.cursor),i=((()=>{var r;if(a.ket=a.cursor,0!=(r=a.find_among_b(m))&&(a.bra=a.cursor,z()))switch(r){case 1:if(a.slice_from("tion"))break;return;case 2:if(a.slice_from("ate"))break;return;case 3:if(a.slice_from("al"))break;return;case 4:if(a.slice_from("ic"))break;return;case 5:if(a.slice_del())break;return;case 6:if(!Y())return;if(a.slice_del())break}})(),a.cursor=a.limit-e,a.limit-a.cursor),r=((()=>{var r;if(a.ket=a.cursor,0!=(r=a.find_among_b(b))&&(a.bra=a.cursor,Y()))switch(r){case 1:if(a.slice_del())break;return;case 2:var i=a.limit-a.cursor;if(!a.eq_s_b("s")&&(a.cursor=a.limit-i,!a.eq_s_b("t")))return;if(a.slice_del())break}})(),a.cursor=a.limit-i,a.limit-a.cursor),e=((()=>{var r;if(a.ket=a.cursor,0!=(r=a.find_among_b(k)))switch(a.bra=a.cursor,r){case 1:if(!Y()){if(!z())return;var i=a.limit-a.cursor;if(q())return;a.cursor=a.limit-i}if(a.slice_del())break;return;case 2:if(!Y())return;if(!a.eq_s_b("l"))return;if(a.slice_del())break}})(),a.cursor=a.limit-r,a.cursor=a.limit_backward,a.cursor);(()=>{if(p)for(;;){var r=a.cursor;r:{for(;;){var i=a.cursor;if(a.bra=a.cursor,a.eq_s("Y")){a.ket=a.cursor,a.cursor=i;break}if(a.cursor=i,a.cursor>=a.limit)break r;a.cursor++}if(a.slice_from("y"))continue;return}a.cursor=r;break}})(),a.cursor=e}}return!0},this.stemWord=function(r){return a.setCurrent(r),this.stem(),a.getCurrent()}};
+window.Stemmer = EnglishStemmer;
diff --git a/src/scitex/_sphinx_html/_static/nbsphinx-broken-thumbnail.svg b/src/scitex/_sphinx_html/_static/nbsphinx-broken-thumbnail.svg
new file mode 100644
index 000000000..4919ca882
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/nbsphinx-broken-thumbnail.svg
@@ -0,0 +1,9 @@
+<svg xmlns="http://www.w3.org/2000/svg" width="100" height="100">
+  <style>
+    svg { fill: lightcoral; }
+    @media (prefers-color-scheme: dark) {
+      svg { fill: crimson; }
+    }
+  </style>
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diff --git a/src/scitex/_sphinx_html/_static/nbsphinx-code-cells.css b/src/scitex/_sphinx_html/_static/nbsphinx-code-cells.css
new file mode 100644
index 000000000..a3fb27c30
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/nbsphinx-code-cells.css
@@ -0,0 +1,259 @@
+/* remove conflicting styling from Sphinx themes */
+div.nbinput.container div.prompt *,
+div.nboutput.container div.prompt *,
+div.nbinput.container div.input_area pre,
+div.nboutput.container div.output_area pre,
+div.nbinput.container div.input_area .highlight,
+div.nboutput.container div.output_area .highlight {
+    border: none;
+    padding: 0;
+    margin: 0;
+    box-shadow: none;
+}
+
+div.nbinput.container > div[class*=highlight],
+div.nboutput.container > div[class*=highlight] {
+    margin: 0;
+}
+
+div.nbinput.container div.prompt *,
+div.nboutput.container div.prompt * {
+    background: none;
+}
+
+div.nboutput.container div.output_area .highlight,
+div.nboutput.container div.output_area pre {
+    background: unset;
+}
+
+div.nboutput.container div.output_area div.highlight {
+    color: unset;  /* override Pygments text color */
+}
+
+/* avoid gaps between output lines */
+div.nboutput.container div[class*=highlight] pre {
+    line-height: normal;
+}
+
+/* input/output containers */
+div.nbinput.container,
+div.nboutput.container {
+    display: -webkit-flex;
+    display: flex;
+    align-items: flex-start;
+    margin: 0;
+    width: 100%;
+}
+@media (max-width: 540px) {
+    div.nbinput.container,
+    div.nboutput.container {
+        flex-direction: column;
+    }
+}
+
+/* input container */
+div.nbinput.container {
+    padding-top: 5px;
+}
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+/* last container */
+div.nblast.container {
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+}
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+/* input prompt */
+div.nbinput.container div.prompt pre,
+/* for sphinx_immaterial theme: */
+div.nbinput.container div.prompt pre > code {
+    color: #307FC1;
+}
+
+/* output prompt */
+div.nboutput.container div.prompt pre,
+/* for sphinx_immaterial theme: */
+div.nboutput.container div.prompt pre > code {
+    color: #BF5B3D;
+}
+
+/* all prompts */
+div.nbinput.container div.prompt,
+div.nboutput.container div.prompt {
+    width: 4.5ex;
+    padding-top: 5px;
+    position: relative;
+    user-select: none;
+}
+
+div.nbinput.container div.prompt > div,
+div.nboutput.container div.prompt > div {
+    position: absolute;
+    right: 0;
+    margin-right: 0.3ex;
+}
+
+@media (max-width: 540px) {
+    div.nbinput.container div.prompt,
+    div.nboutput.container div.prompt {
+        width: unset;
+        text-align: left;
+        padding: 0.4em;
+    }
+    div.nboutput.container div.prompt.empty {
+        padding: 0;
+    }
+
+    div.nbinput.container div.prompt > div,
+    div.nboutput.container div.prompt > div {
+        position: unset;
+    }
+}
+
+/* disable scrollbars and line breaks on prompts */
+div.nbinput.container div.prompt pre,
+div.nboutput.container div.prompt pre {
+    overflow: hidden;
+    white-space: pre;
+}
+
+/* input/output area */
+div.nbinput.container div.input_area,
+div.nboutput.container div.output_area {
+    -webkit-flex: 1;
+    flex: 1;
+    overflow: auto;
+}
+@media (max-width: 540px) {
+    div.nbinput.container div.input_area,
+    div.nboutput.container div.output_area {
+        width: 100%;
+    }
+}
+
+/* input area */
+div.nbinput.container div.input_area {
+    border: 1px solid #e0e0e0;
+    border-radius: 2px;
+    /*background: #f5f5f5;*/
+}
+
+/* override MathJax center alignment in output cells */
+div.nboutput.container div[class*=MathJax] {
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+}
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+}
+
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+div.nboutput.container div.output_area.stderr {
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+}
+
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+.ansi-white-intense-bg { background-color: #A1A6B2; }
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+.ansi-default-inverse-bg { background-color: #000000; }
+
+.ansi-bold { font-weight: bold; }
+.ansi-underline { text-decoration: underline; }
+
+
+div.nbinput.container div.input_area div[class*=highlight] > pre,
+div.nboutput.container div.output_area div[class*=highlight] > pre,
+div.nboutput.container div.output_area div[class*=highlight].math,
+div.nboutput.container div.output_area.rendered_html,
+div.nboutput.container div.output_area > div.output_javascript,
+div.nboutput.container div.output_area:not(.rendered_html) > img{
+    padding: 5px;
+    margin: 0;
+}
+
+/* fix copybtn overflow problem in chromium (needed for 'sphinx_copybutton') */
+div.nbinput.container div.input_area > div[class^='highlight'],
+div.nboutput.container div.output_area > div[class^='highlight']{
+    overflow-y: hidden;
+}
+
+/* hide copy button on prompts for 'sphinx_copybutton' extension ... */
+.prompt .copybtn,
+/* ... and 'sphinx_immaterial' theme */
+.prompt .md-clipboard.md-icon {
+    display: none;
+}
+
+/* Some additional styling taken form the Jupyter notebook CSS */
+.jp-RenderedHTMLCommon table,
+div.rendered_html table {
+  border: none;
+  border-collapse: collapse;
+  border-spacing: 0;
+  color: black;
+  font-size: 12px;
+  table-layout: fixed;
+}
+.jp-RenderedHTMLCommon thead,
+div.rendered_html thead {
+  border-bottom: 1px solid black;
+  vertical-align: bottom;
+}
+.jp-RenderedHTMLCommon tr,
+.jp-RenderedHTMLCommon th,
+.jp-RenderedHTMLCommon td,
+div.rendered_html tr,
+div.rendered_html th,
+div.rendered_html td {
+  text-align: right;
+  vertical-align: middle;
+  padding: 0.5em 0.5em;
+  line-height: normal;
+  white-space: normal;
+  max-width: none;
+  border: none;
+}
+.jp-RenderedHTMLCommon th,
+div.rendered_html th {
+  font-weight: bold;
+}
+.jp-RenderedHTMLCommon tbody tr:nth-child(odd),
+div.rendered_html tbody tr:nth-child(odd) {
+  background: #f5f5f5;
+}
+.jp-RenderedHTMLCommon tbody tr:hover,
+div.rendered_html tbody tr:hover {
+  background: rgba(66, 165, 245, 0.2);
+}
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new file mode 100644
index 000000000..365c27a96
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/nbsphinx-gallery.css
@@ -0,0 +1,31 @@
+.nbsphinx-gallery {
+    display: grid;
+    grid-template-columns: repeat(auto-fill, minmax(160px, 1fr));
+    gap: 5px;
+    margin-top: 1em;
+    margin-bottom: 1em;
+}
+
+.nbsphinx-gallery > a {
+    padding: 5px;
+    border: 1px dotted currentColor;
+    border-radius: 2px;
+    text-align: center;
+}
+
+.nbsphinx-gallery > a:hover {
+    border-style: solid;
+}
+
+.nbsphinx-gallery img {
+    max-width: 100%;
+    max-height: 100%;
+}
+
+.nbsphinx-gallery > a > div:first-child {
+    display: flex;
+    align-items: start;
+    justify-content: center;
+    height: 120px;
+    margin-bottom: 5px;
+}
diff --git a/src/scitex/_sphinx_html/_static/nbsphinx-no-thumbnail.svg b/src/scitex/_sphinx_html/_static/nbsphinx-no-thumbnail.svg
new file mode 100644
index 000000000..9dca7588f
--- /dev/null
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new file mode 100644
index 000000000..6f8b210a1
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+++ b/src/scitex/_sphinx_html/_static/pygments.css
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+td.linenos .special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
+span.linenos.special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
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+.highlight .ges { font-weight: bold; font-style: italic } /* Generic.EmphStrong */
+.highlight .gr { color: #E40000 } /* Generic.Error */
+.highlight .gh { color: #000080; font-weight: bold } /* Generic.Heading */
+.highlight .gi { color: #008400 } /* Generic.Inserted */
+.highlight .go { color: #717171 } /* Generic.Output */
+.highlight .gp { color: #000080; font-weight: bold } /* Generic.Prompt */
+.highlight .gs { font-weight: bold } /* Generic.Strong */
+.highlight .gu { color: #800080; font-weight: bold } /* Generic.Subheading */
+.highlight .gt { color: #04D } /* Generic.Traceback */
+.highlight .kc { color: #008000; font-weight: bold } /* Keyword.Constant */
+.highlight .kd { color: #008000; font-weight: bold } /* Keyword.Declaration */
+.highlight .kn { color: #008000; font-weight: bold } /* Keyword.Namespace */
+.highlight .kp { color: #008000 } /* Keyword.Pseudo */
+.highlight .kr { color: #008000; font-weight: bold } /* Keyword.Reserved */
+.highlight .kt { color: #B00040 } /* Keyword.Type */
+.highlight .m { color: #666 } /* Literal.Number */
+.highlight .s { color: #BA2121 } /* Literal.String */
+.highlight .na { color: #687822 } /* Name.Attribute */
+.highlight .nb { color: #008000 } /* Name.Builtin */
+.highlight .nc { color: #00F; font-weight: bold } /* Name.Class */
+.highlight .no { color: #800 } /* Name.Constant */
+.highlight .nd { color: #A2F } /* Name.Decorator */
+.highlight .ni { color: #717171; font-weight: bold } /* Name.Entity */
+.highlight .ne { color: #CB3F38; font-weight: bold } /* Name.Exception */
+.highlight .nf { color: #00F } /* Name.Function */
+.highlight .nl { color: #767600 } /* Name.Label */
+.highlight .nn { color: #00F; font-weight: bold } /* Name.Namespace */
+.highlight .nt { color: #008000; font-weight: bold } /* Name.Tag */
+.highlight .nv { color: #19177C } /* Name.Variable */
+.highlight .ow { color: #A2F; font-weight: bold } /* Operator.Word */
+.highlight .w { color: #BBB } /* Text.Whitespace */
+.highlight .mb { color: #666 } /* Literal.Number.Bin */
+.highlight .mf { color: #666 } /* Literal.Number.Float */
+.highlight .mh { color: #666 } /* Literal.Number.Hex */
+.highlight .mi { color: #666 } /* Literal.Number.Integer */
+.highlight .mo { color: #666 } /* Literal.Number.Oct */
+.highlight .sa { color: #BA2121 } /* Literal.String.Affix */
+.highlight .sb { color: #BA2121 } /* Literal.String.Backtick */
+.highlight .sc { color: #BA2121 } /* Literal.String.Char */
+.highlight .dl { color: #BA2121 } /* Literal.String.Delimiter */
+.highlight .sd { color: #BA2121; font-style: italic } /* Literal.String.Doc */
+.highlight .s2 { color: #BA2121 } /* Literal.String.Double */
+.highlight .se { color: #AA5D1F; font-weight: bold } /* Literal.String.Escape */
+.highlight .sh { color: #BA2121 } /* Literal.String.Heredoc */
+.highlight .si { color: #A45A77; font-weight: bold } /* Literal.String.Interpol */
+.highlight .sx { color: #008000 } /* Literal.String.Other */
+.highlight .sr { color: #A45A77 } /* Literal.String.Regex */
+.highlight .s1 { color: #BA2121 } /* Literal.String.Single */
+.highlight .ss { color: #19177C } /* Literal.String.Symbol */
+.highlight .bp { color: #008000 } /* Name.Builtin.Pseudo */
+.highlight .fm { color: #00F } /* Name.Function.Magic */
+.highlight .vc { color: #19177C } /* Name.Variable.Class */
+.highlight .vg { color: #19177C } /* Name.Variable.Global */
+.highlight .vi { color: #19177C } /* Name.Variable.Instance */
+.highlight .vm { color: #19177C } /* Name.Variable.Magic */
+.highlight .il { color: #666 } /* Literal.Number.Integer.Long */
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/_static/searchtools.js b/src/scitex/_sphinx_html/_static/searchtools.js
new file mode 100644
index 000000000..e29b1c754
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/searchtools.js
@@ -0,0 +1,693 @@
+/*
+ * Sphinx JavaScript utilities for the full-text search.
+ */
+"use strict";
+
+/**
+ * Simple result scoring code.
+ */
+if (typeof Scorer === "undefined") {
+  var Scorer = {
+    // Implement the following function to further tweak the score for each result
+    // The function takes a result array [docname, title, anchor, descr, score, filename]
+    // and returns the new score.
+    /*
+    score: result => {
+      const [docname, title, anchor, descr, score, filename, kind] = result
+      return score
+    },
+    */
+
+    // query matches the full name of an object
+    objNameMatch: 11,
+    // or matches in the last dotted part of the object name
+    objPartialMatch: 6,
+    // Additive scores depending on the priority of the object
+    objPrio: {
+      0: 15, // used to be importantResults
+      1: 5, // used to be objectResults
+      2: -5, // used to be unimportantResults
+    },
+    //  Used when the priority is not in the mapping.
+    objPrioDefault: 0,
+
+    // query found in title
+    title: 15,
+    partialTitle: 7,
+    // query found in terms
+    term: 5,
+    partialTerm: 2,
+  };
+}
+
+// Global search result kind enum, used by themes to style search results.
+// prettier-ignore
+class SearchResultKind {
+  static get index() { return "index"; }
+  static get object() { return "object"; }
+  static get text() { return "text"; }
+  static get title() { return "title"; }
+}
+
+const _removeChildren = (element) => {
+  while (element && element.lastChild) element.removeChild(element.lastChild);
+};
+
+/**
+ * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping
+ */
+const _escapeRegExp = (string) =>
+  string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string
+
+const _escapeHTML = (text) => {
+  return text
+    .replaceAll("&", "&amp;")
+    .replaceAll("<", "&lt;")
+    .replaceAll(">", "&gt;")
+    .replaceAll('"', "&quot;")
+    .replaceAll("'", "&apos;");
+};
+
+const _displayItem = (item, searchTerms, highlightTerms) => {
+  const docBuilder = DOCUMENTATION_OPTIONS.BUILDER;
+  const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX;
+  const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX;
+  const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY;
+  const contentRoot = document.documentElement.dataset.content_root;
+
+  const [docName, title, anchor, descr, score, _filename, kind] = item;
+
+  let listItem = document.createElement("li");
+  // Add a class representing the item's type:
+  // can be used by a theme's CSS selector for styling
+  // See SearchResultKind for the class names.
+  listItem.classList.add(`kind-${kind}`);
+  let requestUrl;
+  let linkUrl;
+  if (docBuilder === "dirhtml") {
+    // dirhtml builder
+    let dirname = docName + "/";
+    if (dirname.match(/\/index\/$/))
+      dirname = dirname.substring(0, dirname.length - 6);
+    else if (dirname === "index/") dirname = "";
+    requestUrl = contentRoot + dirname;
+    linkUrl = requestUrl;
+  } else {
+    // normal html builders
+    requestUrl = contentRoot + docName + docFileSuffix;
+    linkUrl = docName + docLinkSuffix;
+  }
+  let linkEl = listItem.appendChild(document.createElement("a"));
+  linkEl.href = linkUrl + anchor;
+  linkEl.dataset.score = score;
+  linkEl.innerHTML = _escapeHTML(title);
+  if (descr) {
+    listItem.appendChild(document.createElement("span")).innerHTML =
+      ` (${_escapeHTML(descr)})`;
+    // highlight search terms in the description
+    if (SPHINX_HIGHLIGHT_ENABLED)
+      // SPHINX_HIGHLIGHT_ENABLED is set in sphinx_highlight.js
+      highlightTerms.forEach((term) =>
+        _highlightText(listItem, term, "highlighted"),
+      );
+  } else if (showSearchSummary)
+    fetch(requestUrl)
+      .then((responseData) => responseData.text())
+      .then((data) => {
+        if (data)
+          listItem.appendChild(
+            Search.makeSearchSummary(data, searchTerms, anchor),
+          );
+        // highlight search terms in the summary
+        if (SPHINX_HIGHLIGHT_ENABLED)
+          // SPHINX_HIGHLIGHT_ENABLED is set in sphinx_highlight.js
+          highlightTerms.forEach((term) =>
+            _highlightText(listItem, term, "highlighted"),
+          );
+      });
+  Search.output.appendChild(listItem);
+};
+const _finishSearch = (resultCount) => {
+  Search.stopPulse();
+  Search.title.innerText = _("Search Results");
+  if (!resultCount)
+    Search.status.innerText = Documentation.gettext(
+      "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories.",
+    );
+  else
+    Search.status.innerText = Documentation.ngettext(
+      "Search finished, found one page matching the search query.",
+      "Search finished, found ${resultCount} pages matching the search query.",
+      resultCount,
+    ).replace("${resultCount}", resultCount);
+};
+const _displayNextItem = (
+  results,
+  resultCount,
+  searchTerms,
+  highlightTerms,
+) => {
+  // results left, load the summary and display it
+  // this is intended to be dynamic (don't sub resultsCount)
+  if (results.length) {
+    _displayItem(results.pop(), searchTerms, highlightTerms);
+    setTimeout(
+      () => _displayNextItem(results, resultCount, searchTerms, highlightTerms),
+      5,
+    );
+  }
+  // search finished, update title and status message
+  else _finishSearch(resultCount);
+};
+// Helper function used by query() to order search results.
+// Each input is an array of [docname, title, anchor, descr, score, filename, kind].
+// Order the results by score (in opposite order of appearance, since the
+// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
+const _orderResultsByScoreThenName = (a, b) => {
+  const leftScore = a[4];
+  const rightScore = b[4];
+  if (leftScore === rightScore) {
+    // same score: sort alphabetically
+    const leftTitle = a[1].toLowerCase();
+    const rightTitle = b[1].toLowerCase();
+    if (leftTitle === rightTitle) return 0;
+    return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
+  }
+  return leftScore > rightScore ? 1 : -1;
+};
+
+/**
+ * Default splitQuery function. Can be overridden in ``sphinx.search`` with a
+ * custom function per language.
+ *
+ * The regular expression works by splitting the string on consecutive characters
+ * that are not Unicode letters, numbers, underscores, or emoji characters.
+ * This is the same as ``\W+`` in Python, preserving the surrogate pair area.
+ */
+if (typeof splitQuery === "undefined") {
+  var splitQuery = (query) =>
+    query
+      .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu)
+      .filter((term) => term); // remove remaining empty strings
+}
+
+/**
+ * Search Module
+ */
+const Search = {
+  _index: null,
+  _queued_query: null,
+  _pulse_status: -1,
+
+  htmlToText: (htmlString, anchor) => {
+    const htmlElement = new DOMParser().parseFromString(
+      htmlString,
+      "text/html",
+    );
+    for (const removalQuery of [".headerlink", "script", "style"]) {
+      htmlElement.querySelectorAll(removalQuery).forEach((el) => {
+        el.remove();
+      });
+    }
+    if (anchor) {
+      const anchorContent = htmlElement.querySelector(
+        `[role="main"] ${anchor}`,
+      );
+      if (anchorContent) return anchorContent.textContent;
+
+      console.warn(
+        `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.`,
+      );
+    }
+
+    // if anchor not specified or not found, fall back to main content
+    const docContent = htmlElement.querySelector('[role="main"]');
+    if (docContent) return docContent.textContent;
+
+    console.warn(
+      "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template.",
+    );
+    return "";
+  },
+
+  init: () => {
+    const query = new URLSearchParams(window.location.search).get("q");
+    document
+      .querySelectorAll('input[name="q"]')
+      .forEach((el) => (el.value = query));
+    if (query) Search.performSearch(query);
+  },
+
+  loadIndex: (url) =>
+    (document.body.appendChild(document.createElement("script")).src = url),
+
+  setIndex: (index) => {
+    Search._index = index;
+    if (Search._queued_query !== null) {
+      const query = Search._queued_query;
+      Search._queued_query = null;
+      Search.query(query);
+    }
+  },
+
+  hasIndex: () => Search._index !== null,
+
+  deferQuery: (query) => (Search._queued_query = query),
+
+  stopPulse: () => (Search._pulse_status = -1),
+
+  startPulse: () => {
+    if (Search._pulse_status >= 0) return;
+
+    const pulse = () => {
+      Search._pulse_status = (Search._pulse_status + 1) % 4;
+      Search.dots.innerText = ".".repeat(Search._pulse_status);
+      if (Search._pulse_status >= 0) window.setTimeout(pulse, 500);
+    };
+    pulse();
+  },
+
+  /**
+   * perform a search for something (or wait until index is loaded)
+   */
+  performSearch: (query) => {
+    // create the required interface elements
+    const searchText = document.createElement("h2");
+    searchText.textContent = _("Searching");
+    const searchSummary = document.createElement("p");
+    searchSummary.classList.add("search-summary");
+    searchSummary.innerText = "";
+    const searchList = document.createElement("ul");
+    searchList.setAttribute("role", "list");
+    searchList.classList.add("search");
+
+    const out = document.getElementById("search-results");
+    Search.title = out.appendChild(searchText);
+    Search.dots = Search.title.appendChild(document.createElement("span"));
+    Search.status = out.appendChild(searchSummary);
+    Search.output = out.appendChild(searchList);
+
+    const searchProgress = document.getElementById("search-progress");
+    // Some themes don't use the search progress node
+    if (searchProgress) {
+      searchProgress.innerText = _("Preparing search...");
+    }
+    Search.startPulse();
+
+    // index already loaded, the browser was quick!
+    if (Search.hasIndex()) Search.query(query);
+    else Search.deferQuery(query);
+  },
+
+  _parseQuery: (query) => {
+    // stem the search terms and add them to the correct list
+    const stemmer = new Stemmer();
+    const searchTerms = new Set();
+    const excludedTerms = new Set();
+    const highlightTerms = new Set();
+    const objectTerms = new Set(splitQuery(query.toLowerCase().trim()));
+    splitQuery(query.trim()).forEach((queryTerm) => {
+      const queryTermLower = queryTerm.toLowerCase();
+
+      // maybe skip this "word"
+      // stopwords set is from language_data.js
+      if (stopwords.has(queryTermLower) || queryTerm.match(/^\d+$/)) return;
+
+      // stem the word
+      let word = stemmer.stemWord(queryTermLower);
+      // select the correct list
+      if (word[0] === "-") excludedTerms.add(word.substr(1));
+      else {
+        searchTerms.add(word);
+        highlightTerms.add(queryTermLower);
+      }
+    });
+
+    if (SPHINX_HIGHLIGHT_ENABLED) {
+      // SPHINX_HIGHLIGHT_ENABLED is set in sphinx_highlight.js
+      localStorage.setItem(
+        "sphinx_highlight_terms",
+        [...highlightTerms].join(" "),
+      );
+    }
+
+    // console.debug("SEARCH: searching for:");
+    // console.info("required: ", [...searchTerms]);
+    // console.info("excluded: ", [...excludedTerms]);
+
+    return [query, searchTerms, excludedTerms, highlightTerms, objectTerms];
+  },
+
+  /**
+   * execute search (requires search index to be loaded)
+   */
+  _performSearch: (
+    query,
+    searchTerms,
+    excludedTerms,
+    highlightTerms,
+    objectTerms,
+  ) => {
+    const filenames = Search._index.filenames;
+    const docNames = Search._index.docnames;
+    const titles = Search._index.titles;
+    const allTitles = Search._index.alltitles;
+    const indexEntries = Search._index.indexentries;
+
+    // Collect multiple result groups to be sorted separately and then ordered.
+    // Each is an array of [docname, title, anchor, descr, score, filename, kind].
+    const normalResults = [];
+    const nonMainIndexResults = [];
+
+    _removeChildren(document.getElementById("search-progress"));
+
+    const queryLower = query.toLowerCase().trim();
+    for (const [title, foundTitles] of Object.entries(allTitles)) {
+      if (
+        title.toLowerCase().trim().includes(queryLower)
+        && queryLower.length >= title.length / 2
+      ) {
+        for (const [file, id] of foundTitles) {
+          const score = Math.round(
+            (Scorer.title * queryLower.length) / title.length,
+          );
+          const boost = titles[file] === title ? 1 : 0; // add a boost for document titles
+          normalResults.push([
+            docNames[file],
+            titles[file] !== title ? `${titles[file]} > ${title}` : title,
+            id !== null ? "#" + id : "",
+            null,
+            score + boost,
+            filenames[file],
+            SearchResultKind.title,
+          ]);
+        }
+      }
+    }
+
+    // search for explicit entries in index directives
+    for (const [entry, foundEntries] of Object.entries(indexEntries)) {
+      if (entry.includes(queryLower) && queryLower.length >= entry.length / 2) {
+        for (const [file, id, isMain] of foundEntries) {
+          const score = Math.round((100 * queryLower.length) / entry.length);
+          const result = [
+            docNames[file],
+            titles[file],
+            id ? "#" + id : "",
+            null,
+            score,
+            filenames[file],
+            SearchResultKind.index,
+          ];
+          if (isMain) {
+            normalResults.push(result);
+          } else {
+            nonMainIndexResults.push(result);
+          }
+        }
+      }
+    }
+
+    // lookup as object
+    objectTerms.forEach((term) =>
+      normalResults.push(...Search.performObjectSearch(term, objectTerms)),
+    );
+
+    // lookup as search terms in fulltext
+    normalResults.push(
+      ...Search.performTermsSearch(searchTerms, excludedTerms),
+    );
+
+    // let the scorer override scores with a custom scoring function
+    if (Scorer.score) {
+      normalResults.forEach((item) => (item[4] = Scorer.score(item)));
+      nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item)));
+    }
+
+    // Sort each group of results by score and then alphabetically by name.
+    normalResults.sort(_orderResultsByScoreThenName);
+    nonMainIndexResults.sort(_orderResultsByScoreThenName);
+
+    // Combine the result groups in (reverse) order.
+    // Non-main index entries are typically arbitrary cross-references,
+    // so display them after other results.
+    let results = [...nonMainIndexResults, ...normalResults];
+
+    // remove duplicate search results
+    // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept
+    let seen = new Set();
+    results = results.reverse().reduce((acc, result) => {
+      let resultStr = result
+        .slice(0, 4)
+        .concat([result[5]])
+        .map((v) => String(v))
+        .join(",");
+      if (!seen.has(resultStr)) {
+        acc.push(result);
+        seen.add(resultStr);
+      }
+      return acc;
+    }, []);
+
+    return results.reverse();
+  },
+
+  query: (query) => {
+    const [
+      searchQuery,
+      searchTerms,
+      excludedTerms,
+      highlightTerms,
+      objectTerms,
+    ] = Search._parseQuery(query);
+    const results = Search._performSearch(
+      searchQuery,
+      searchTerms,
+      excludedTerms,
+      highlightTerms,
+      objectTerms,
+    );
+
+    // for debugging
+    //Search.lastresults = results.slice();  // a copy
+    // console.info("search results:", Search.lastresults);
+
+    // print the results
+    _displayNextItem(results, results.length, searchTerms, highlightTerms);
+  },
+
+  /**
+   * search for object names
+   */
+  performObjectSearch: (object, objectTerms) => {
+    const filenames = Search._index.filenames;
+    const docNames = Search._index.docnames;
+    const objects = Search._index.objects;
+    const objNames = Search._index.objnames;
+    const titles = Search._index.titles;
+
+    const results = [];
+
+    const objectSearchCallback = (prefix, match) => {
+      const name = match[4];
+      const fullname = (prefix ? prefix + "." : "") + name;
+      const fullnameLower = fullname.toLowerCase();
+      if (fullnameLower.indexOf(object) < 0) return;
+
+      let score = 0;
+      const parts = fullnameLower.split(".");
+
+      // check for different match types: exact matches of full name or
+      // "last name" (i.e. last dotted part)
+      if (fullnameLower === object || parts.slice(-1)[0] === object)
+        score += Scorer.objNameMatch;
+      else if (parts.slice(-1)[0].indexOf(object) > -1)
+        score += Scorer.objPartialMatch; // matches in last name
+
+      const objName = objNames[match[1]][2];
+      const title = titles[match[0]];
+
+      // If more than one term searched for, we require other words to be
+      // found in the name/title/description
+      const otherTerms = new Set(objectTerms);
+      otherTerms.delete(object);
+      if (otherTerms.size > 0) {
+        const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase();
+        if (
+          [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0)
+        )
+          return;
+      }
+
+      let anchor = match[3];
+      if (anchor === "") anchor = fullname;
+      else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname;
+
+      const descr = objName + _(", in ") + title;
+
+      // add custom score for some objects according to scorer
+      if (Scorer.objPrio.hasOwnProperty(match[2]))
+        score += Scorer.objPrio[match[2]];
+      else score += Scorer.objPrioDefault;
+
+      results.push([
+        docNames[match[0]],
+        fullname,
+        "#" + anchor,
+        descr,
+        score,
+        filenames[match[0]],
+        SearchResultKind.object,
+      ]);
+    };
+    Object.keys(objects).forEach((prefix) =>
+      objects[prefix].forEach((array) => objectSearchCallback(prefix, array)),
+    );
+    return results;
+  },
+
+  /**
+   * search for full-text terms in the index
+   */
+  performTermsSearch: (searchTerms, excludedTerms) => {
+    // prepare search
+    const terms = Search._index.terms;
+    const titleTerms = Search._index.titleterms;
+    const filenames = Search._index.filenames;
+    const docNames = Search._index.docnames;
+    const titles = Search._index.titles;
+
+    const scoreMap = new Map();
+    const fileMap = new Map();
+
+    // perform the search on the required terms
+    searchTerms.forEach((word) => {
+      const files = [];
+      // find documents, if any, containing the query word in their text/title term indices
+      // use Object.hasOwnProperty to avoid mismatching against prototype properties
+      const arr = [
+        {
+          files: terms.hasOwnProperty(word) ? terms[word] : undefined,
+          score: Scorer.term,
+        },
+        {
+          files: titleTerms.hasOwnProperty(word) ? titleTerms[word] : undefined,
+          score: Scorer.title,
+        },
+      ];
+      // add support for partial matches
+      if (word.length > 2) {
+        const escapedWord = _escapeRegExp(word);
+        if (!terms.hasOwnProperty(word)) {
+          Object.keys(terms).forEach((term) => {
+            if (term.match(escapedWord))
+              arr.push({ files: terms[term], score: Scorer.partialTerm });
+          });
+        }
+        if (!titleTerms.hasOwnProperty(word)) {
+          Object.keys(titleTerms).forEach((term) => {
+            if (term.match(escapedWord))
+              arr.push({ files: titleTerms[term], score: Scorer.partialTitle });
+          });
+        }
+      }
+
+      // no match but word was a required one
+      if (arr.every((record) => record.files === undefined)) return;
+
+      // found search word in contents
+      arr.forEach((record) => {
+        if (record.files === undefined) return;
+
+        let recordFiles = record.files;
+        if (recordFiles.length === undefined) recordFiles = [recordFiles];
+        files.push(...recordFiles);
+
+        // set score for the word in each file
+        recordFiles.forEach((file) => {
+          if (!scoreMap.has(file)) scoreMap.set(file, new Map());
+          const fileScores = scoreMap.get(file);
+          fileScores.set(word, record.score);
+        });
+      });
+
+      // create the mapping
+      files.forEach((file) => {
+        if (!fileMap.has(file)) fileMap.set(file, [word]);
+        else if (fileMap.get(file).indexOf(word) === -1)
+          fileMap.get(file).push(word);
+      });
+    });
+
+    // now check if the files don't contain excluded terms
+    const results = [];
+    for (const [file, wordList] of fileMap) {
+      // check if all requirements are matched
+
+      // as search terms with length < 3 are discarded
+      const filteredTermCount = [...searchTerms].filter(
+        (term) => term.length > 2,
+      ).length;
+      if (
+        wordList.length !== searchTerms.size
+        && wordList.length !== filteredTermCount
+      )
+        continue;
+
+      // ensure that none of the excluded terms is in the search result
+      if (
+        [...excludedTerms].some(
+          (term) =>
+            terms[term] === file
+            || titleTerms[term] === file
+            || (terms[term] || []).includes(file)
+            || (titleTerms[term] || []).includes(file),
+        )
+      )
+        break;
+
+      // select one (max) score for the file.
+      const score = Math.max(...wordList.map((w) => scoreMap.get(file).get(w)));
+      // add result to the result list
+      results.push([
+        docNames[file],
+        titles[file],
+        "",
+        null,
+        score,
+        filenames[file],
+        SearchResultKind.text,
+      ]);
+    }
+    return results;
+  },
+
+  /**
+   * helper function to return a node containing the
+   * search summary for a given text. keywords is a list
+   * of stemmed words.
+   */
+  makeSearchSummary: (htmlText, keywords, anchor) => {
+    const text = Search.htmlToText(htmlText, anchor);
+    if (text === "") return null;
+
+    const textLower = text.toLowerCase();
+    const actualStartPosition = [...keywords]
+      .map((k) => textLower.indexOf(k.toLowerCase()))
+      .filter((i) => i > -1)
+      .slice(-1)[0];
+    const startWithContext = Math.max(actualStartPosition - 120, 0);
+
+    const top = startWithContext === 0 ? "" : "...";
+    const tail = startWithContext + 240 < text.length ? "..." : "";
+
+    let summary = document.createElement("p");
+    summary.classList.add("context");
+    summary.textContent =
+      top + text.substr(startWithContext, 240).trim() + tail;
+
+    return summary;
+  },
+};
+
+_ready(Search.init);
diff --git a/src/scitex/_sphinx_html/_static/session_lifecycle.mmd b/src/scitex/_sphinx_html/_static/session_lifecycle.mmd
new file mode 100644
index 000000000..d42ad8270
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/session_lifecycle.mmd
@@ -0,0 +1,20 @@
+%%{init: {"theme": "default"}}%%
+graph TD
+    A(["main()"])
+    B["Parse CLI args from signature"]
+    C["Create session dir"]
+    D["Load config, inject globals"]
+    E["Execute function"]
+    F{"return code?"}
+    G(["FINISHED_SUCCESS/"])
+    H(["FINISHED_ERROR/"])
+    A --> B
+    B --> C
+    C --> D
+    D --> E
+    E --> F
+    F -->|"0"| G
+    F -->|"nonzero"| H
+    style E fill:#e8f4fd,stroke:#2196F3,stroke-width:2px
+    style G fill:#e8f5e9,stroke:#4CAF50
+    style H fill:#fce4ec,stroke:#E91E63
diff --git a/src/scitex/_sphinx_html/_static/sphinx_highlight.js b/src/scitex/_sphinx_html/_static/sphinx_highlight.js
new file mode 100644
index 000000000..a74e103a8
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/sphinx_highlight.js
@@ -0,0 +1,159 @@
+/* Highlighting utilities for Sphinx HTML documentation. */
+"use strict";
+
+const SPHINX_HIGHLIGHT_ENABLED = true;
+
+/**
+ * highlight a given string on a node by wrapping it in
+ * span elements with the given class name.
+ */
+const _highlight = (node, addItems, text, className) => {
+  if (node.nodeType === Node.TEXT_NODE) {
+    const val = node.nodeValue;
+    const parent = node.parentNode;
+    const pos = val.toLowerCase().indexOf(text);
+    if (
+      pos >= 0
+      && !parent.classList.contains(className)
+      && !parent.classList.contains("nohighlight")
+    ) {
+      let span;
+
+      const closestNode = parent.closest("body, svg, foreignObject");
+      const isInSVG = closestNode && closestNode.matches("svg");
+      if (isInSVG) {
+        span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
+      } else {
+        span = document.createElement("span");
+        span.classList.add(className);
+      }
+
+      span.appendChild(document.createTextNode(val.substr(pos, text.length)));
+      const rest = document.createTextNode(val.substr(pos + text.length));
+      parent.insertBefore(span, parent.insertBefore(rest, node.nextSibling));
+      node.nodeValue = val.substr(0, pos);
+      /* There may be more occurrences of search term in this node. So call this
+       * function recursively on the remaining fragment.
+       */
+      _highlight(rest, addItems, text, className);
+
+      if (isInSVG) {
+        const rect = document.createElementNS(
+          "http://www.w3.org/2000/svg",
+          "rect",
+        );
+        const bbox = parent.getBBox();
+        rect.x.baseVal.value = bbox.x;
+        rect.y.baseVal.value = bbox.y;
+        rect.width.baseVal.value = bbox.width;
+        rect.height.baseVal.value = bbox.height;
+        rect.setAttribute("class", className);
+        addItems.push({ parent: parent, target: rect });
+      }
+    }
+  } else if (node.matches && !node.matches("button, select, textarea")) {
+    node.childNodes.forEach((el) => _highlight(el, addItems, text, className));
+  }
+};
+const _highlightText = (thisNode, text, className) => {
+  let addItems = [];
+  _highlight(thisNode, addItems, text, className);
+  addItems.forEach((obj) =>
+    obj.parent.insertAdjacentElement("beforebegin", obj.target),
+  );
+};
+
+/**
+ * Small JavaScript module for the documentation.
+ */
+const SphinxHighlight = {
+  /**
+   * highlight the search words provided in localstorage in the text
+   */
+  highlightSearchWords: () => {
+    if (!SPHINX_HIGHLIGHT_ENABLED) return; // bail if no highlight
+
+    // get and clear terms from localstorage
+    const url = new URL(window.location);
+    const highlight =
+      localStorage.getItem("sphinx_highlight_terms")
+      || url.searchParams.get("highlight")
+      || "";
+    localStorage.removeItem("sphinx_highlight_terms");
+    // Update history only if '?highlight' is present; otherwise it
+    // clears text fragments (not set in window.location by the browser)
+    if (url.searchParams.has("highlight")) {
+      url.searchParams.delete("highlight");
+      window.history.replaceState({}, "", url);
+    }
+
+    // get individual terms from highlight string
+    const terms = highlight
+      .toLowerCase()
+      .split(/\s+/)
+      .filter((x) => x);
+    if (terms.length === 0) return; // nothing to do
+
+    // There should never be more than one element matching "div.body"
+    const divBody = document.querySelectorAll("div.body");
+    const body = divBody.length ? divBody[0] : document.querySelector("body");
+    window.setTimeout(() => {
+      terms.forEach((term) => _highlightText(body, term, "highlighted"));
+    }, 10);
+
+    const searchBox = document.getElementById("searchbox");
+    if (searchBox === null) return;
+    searchBox.appendChild(
+      document
+        .createRange()
+        .createContextualFragment(
+          '<p class="highlight-link">'
+            + '<a href="javascript:SphinxHighlight.hideSearchWords()">'
+            + _("Hide Search Matches")
+            + "</a></p>",
+        ),
+    );
+  },
+
+  /**
+   * helper function to hide the search marks again
+   */
+  hideSearchWords: () => {
+    document
+      .querySelectorAll("#searchbox .highlight-link")
+      .forEach((el) => el.remove());
+    document
+      .querySelectorAll("span.highlighted")
+      .forEach((el) => el.classList.remove("highlighted"));
+    localStorage.removeItem("sphinx_highlight_terms");
+  },
+
+  initEscapeListener: () => {
+    // only install a listener if it is really needed
+    if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return;
+
+    document.addEventListener("keydown", (event) => {
+      // bail for input elements
+      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName))
+        return;
+      // bail with special keys
+      if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey)
+        return;
+      if (
+        DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS
+        && event.key === "Escape"
+      ) {
+        SphinxHighlight.hideSearchWords();
+        event.preventDefault();
+      }
+    });
+  },
+};
+
+_ready(() => {
+  /* Do not call highlightSearchWords() when we are on the search page.
+   * It will highlight words from the *previous* search query.
+   */
+  if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords();
+  SphinxHighlight.initEscapeListener();
+});
diff --git a/src/scitex/_sphinx_html/_static/workflow.mmd b/src/scitex/_sphinx_html/_static/workflow.mmd
new file mode 100644
index 000000000..0be4d81ac
--- /dev/null
+++ b/src/scitex/_sphinx_html/_static/workflow.mmd
@@ -0,0 +1,21 @@
+%%{init: {"theme": "default"}}%%
+graph LR
+    A(["Research Question"])
+    B["Literature<br/>scholar"]
+    C["Data<br/>io"]
+    D["Analysis<br/>stats / dsp"]
+    E["Figures<br/>plt"]
+    F["Manuscript<br/>writer"]
+    G{"Verify<br/>clew"}
+    H(["Publication"])
+
+    A --> B --> C --> D --> E --> F --> G --> H
+
+    style A fill:#f5f5f5,stroke:#999
+    style B fill:#f3e5f5,stroke:#9C27B0
+    style C fill:#e8f4fd,stroke:#2196F3
+    style D fill:#fff3e0,stroke:#FF9800
+    style E fill:#fff3e0,stroke:#FF9800
+    style F fill:#f3e5f5,stroke:#9C27B0
+    style G fill:#f3e5f5,stroke:#9C27B0,stroke-width:2px
+    style H fill:#f5f5f5,stroke:#999
diff --git a/src/scitex/_sphinx_html/api/index.html b/src/scitex/_sphinx_html/api/index.html
new file mode 100644
index 000000000..ae358dfac
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/index.html
@@ -0,0 +1,709 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="scitex.session API Reference" href="scitex.session.html" />
+    <link rel="prev" title="Plot Gallery" href="../gallery.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="current reference internal" href="#">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
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diff --git a/src/scitex/_sphinx_html/api/scitex.ai.html b/src/scitex/_sphinx_html/api/scitex.ai.html
new file mode 100644
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@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <title>scitex.ai API Reference &mdash; SciTeX v0.0.0</title>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
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+
+<!DOCTYPE html>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">API Reference</a></li>
+      <li class="breadcrumb-item active">scitex.clew API Reference</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/api/scitex.clew.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.clew">
+<span id="scitex-clew-api-reference"></span><h1>scitex.clew API Reference<a class="headerlink" href="#module-scitex.clew" title="Link to this heading"></a></h1>
+<p>scitex-clew — Hash-based verification for reproducible science.</p>
+<p>Standalone package. Zero dependencies (pure stdlib + sqlite3).
+When used with scitex, integration is automatic via &#64;stx.session + stx.io.</p>
+<p>Public API:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex_clew</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">clew</span>
+
+<span class="c1"># Verification</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">status</span><span class="p">()</span>                      <span class="c1"># git-status-like overview</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span>               <span class="c1"># verify one run (hash check)</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="n">target_file</span><span class="p">)</span>            <span class="c1"># trace file → source chain</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">dag</span><span class="p">(</span><span class="n">targets</span><span class="p">)</span>                  <span class="c1"># verify full DAG</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">rerun</span><span class="p">(</span><span class="n">target</span><span class="p">)</span>                 <span class="c1"># re-execute &amp; compare (sandbox)</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">rerun_dag</span><span class="p">(</span><span class="n">targets</span><span class="p">)</span>            <span class="c1"># rerun full DAG in topo order</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">rerun_claims</span><span class="p">()</span>                <span class="c1"># rerun all claim-backing sessions</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">list_runs</span><span class="p">(</span><span class="n">limit</span><span class="o">=</span><span class="mi">100</span><span class="p">)</span>          <span class="c1"># list tracked runs</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">stats</span><span class="p">()</span>                       <span class="c1"># database statistics</span>
+
+<span class="c1"># Claims</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">add_claim</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>                <span class="c1"># register manuscript assertion</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">list_claims</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>              <span class="c1"># list registered claims</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">verify_claim</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>             <span class="c1"># verify a specific claim</span>
+
+<span class="c1"># Stamping</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">stamp</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>                    <span class="c1"># create temporal proof</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">list_stamps</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>              <span class="c1"># list stamps</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">check_stamp</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>              <span class="c1"># verify a stamp</span>
+
+<span class="c1"># Hashing</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">hash_file</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>               <span class="c1"># SHA256 of a file</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">hash_directory</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>          <span class="c1"># SHA256 of all files in dir</span>
+
+<span class="c1"># Visualization</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">mermaid</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>                  <span class="c1"># generate Mermaid DAG diagram</span>
+
+<span class="c1"># Examples</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">init_examples</span><span class="p">(</span><span class="n">dest</span><span class="p">)</span>           <span class="c1"># scaffold example pipeline</span>
+
+<span class="c1"># Session lifecycle hooks (invoked by @scitex.session)</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">on_session_start</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span>  <span class="c1"># open a tracked run</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">on_session_close</span><span class="p">(</span><span class="n">status</span><span class="o">=...</span><span class="p">)</span>  <span class="c1"># finalize run + combined hash</span>
+</pre></div>
+</div>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.status">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">status</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew.html#status"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.status" title="Link to this definition"></a></dt>
+<dd><p>Get verification status summary (like git status).</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.run">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">run</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">session_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">from_scratch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew.html#run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.run" title="Link to this definition"></a></dt>
+<dd><p>Verify a specific run.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>session_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Session identifier</p></li>
+<li><p><strong>from_scratch</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, re-execute the script and verify outputs (slow but thorough).
+If False, only compare hashes (fast).</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.chain">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">chain</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew.html#chain"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.chain" title="Link to this definition"></a></dt>
+<dd><p>Verify the dependency chain for a target file.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.dag">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">dag</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">targets</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claims</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew.html#dag"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.dag" title="Link to this definition"></a></dt>
+<dd><p>Verify the DAG for multiple targets or all claims.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>targets</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><em>list</em></a><em> of </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em> or </em><em>Path</em><em>, </em><em>optional</em>) – Target files to verify (mutually exclusive with <code class="docutils literal notranslate"><span class="pre">claims</span></code>).</p></li>
+<li><p><strong>claims</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a><em>, </em><em>optional</em>) – If True, build the DAG from every registered claim.</p></li>
+<li><p><strong>strict</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a><em>, </em><em>optional</em>) – If True (F2), return a failure-attribution dict with
+<code class="docutils literal notranslate"><span class="pre">failed_node</span></code> / <code class="docutils literal notranslate"><span class="pre">root_cause</span></code> / <code class="docutils literal notranslate"><span class="pre">invalidated_claims</span></code> /
+<code class="docutils literal notranslate"><span class="pre">still_valid_claims</span></code> instead of a <code class="docutils literal notranslate"><span class="pre">DAGVerification</span></code>.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.rerun">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">rerun</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cleanup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew.html#rerun"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.rerun" title="Link to this definition"></a></dt>
+<dd><p>Re-execute a session in a sandbox and compare outputs.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>target</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><em>list</em></a><em>[</em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>]</em>) – Session ID, script path, or artifact path.</p></li>
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum execution time in seconds (default: 300).</p></li>
+<li><p><strong>cleanup</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Remove sandbox outputs after verification (default: True).</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.rerun_dag">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">rerun_dag</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">targets</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cleanup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_rerun.html#rerun_dag"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.rerun_dag" title="Link to this definition"></a></dt>
+<dd><p>Rerun-verify an entire DAG in topological order.</p>
+<p>Each session is re-executed in a sandbox against its ORIGINAL stored
+inputs (not freshly rerun outputs from upstream), then compared to
+the original outputs.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>targets</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Target output files whose upstream DAG should be rerun.
+If None, all runs in the database are used and their output
+files become the targets.</p></li>
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum execution time per session in seconds (default: 300).</p></li>
+<li><p><strong>cleanup</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to remove sandbox output directories after each rerun.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unified verification result for the entire DAG.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DAGVerification</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.rerun_claims">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">rerun_claims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cleanup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_rerun.html#rerun_claims"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.rerun_claims" title="Link to this definition"></a></dt>
+<dd><p>Rerun-verify all sessions that produced files referenced by claims.</p>
+<p>Collects unique source files from matching claims, then delegates
+to <code class="docutils literal notranslate"><span class="pre">rerun_dag</span></code> with those files as targets.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Filter claims by manuscript file path.</p></li>
+<li><p><strong>claim_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Filter claims by type (statistic, figure, table, text, value).</p></li>
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum execution time per session in seconds (default: 300).</p></li>
+<li><p><strong>cleanup</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to remove sandbox output directories after each rerun.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unified verification result for the upstream DAG of all
+source files referenced by the matching claims.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DAGVerification</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.list_runs">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">list_runs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">limit</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">status</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew.html#list_runs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.list_runs" title="Link to this definition"></a></dt>
+<dd><p>List tracked runs.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.stats">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">stats</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew.html#stats"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.stats" title="Link to this definition"></a></dt>
+<dd><p>Get database statistics.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.add_claim">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">add_claim</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">line_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">source_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">source_session</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_claim.html#add_claim"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.add_claim" title="Link to this definition"></a></dt>
+<dd><p>Register a claim linking a manuscript assertion to the verification chain.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Path to the manuscript file (e.g., paper.tex).</p></li>
+<li><p><strong>claim_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – One of: statistic, figure, table, text, value.</p></li>
+<li><p><strong>line_number</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Line number in the manuscript.</p></li>
+<li><p><strong>claim_value</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – The asserted value (e.g., “p = 0.003”).</p></li>
+<li><p><strong>source_file</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Path to the source file that produced this claim.</p></li>
+<li><p><strong>source_session</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Session ID that produced the source.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The registered claim object.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Claim</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.list_claims">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">list_claims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">status</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">limit</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_claim.html#list_claims"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.list_claims" title="Link to this definition"></a></dt>
+<dd><p>List registered claims with optional filters.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Filter by manuscript file path.</p></li>
+<li><p><strong>claim_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Filter by claim type.</p></li>
+<li><p><strong>status</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Filter by verification status.</p></li>
+<li><p><strong>limit</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum number of claims to return.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<code class="xref py py-class docutils literal notranslate"><span class="pre">Claim</span></code>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.verify_claim">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">verify_claim</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">claim_id_or_location</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_claim.html#verify_claim"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.verify_claim" title="Link to this definition"></a></dt>
+<dd><p>Verify a specific claim by checking its source against the verification chain.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>claim_id_or_location</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Either a claim_id or a location string like “paper.tex:L42”.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Verification result with claim details and chain status.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.export_claims_json">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">export_claims_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">file_path_filter</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">read_only</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_claim.html#export_claims_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.export_claims_json" title="Link to this definition"></a></dt>
+<dd><p>Export every registered claim to a canonical JSON artifact.</p>
+<p>The exported file is the single human-readable + machine-consumable
+view of the claims table in <code class="docutils literal notranslate"><span class="pre">db.sqlite</span></code>. The DB remains the
+source of truth; this JSON is a regenerable artifact.</p>
+<p>Path resolution (mirrors <code class="xref py py-func docutils literal notranslate"><span class="pre">scitex_clew._db._core._default_db_path()</span></code>):</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>1. Explicit ``path`` argument.
+2. ``$SCITEX_CLEW_CLAIMS_JSON`` env var (escape hatch).
+3. ``&lt;project_root&gt;/.scitex/clew/runtime/claims.json``
+   (project root = nearest ancestor dir with ``.git`` or
+   ``pyproject.toml``; falls back to cwd if none found).
+</pre></div>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Override the resolved path. Useful for tests / one-off dumps.</p></li>
+<li><p><strong>file_path_filter</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – When set, only claims registered against this manuscript file
+path are exported. Default: every claim in the DB.</p></li>
+<li><p><strong>read_only</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – After writing, <code class="docutils literal notranslate"><span class="pre">chmod</span> <span class="pre">0o444</span></code> the file so accidental edits
+fail loudly at the OS layer. Default True (the file IS
+derived). Set False for tests that need to mutate the file.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The path the artifact was written to (absolute).</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex_clew</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">clew</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">clew</span><span class="o">.</span><span class="n">add_claim</span><span class="p">(</span><span class="s2">&quot;paper.tex&quot;</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">,</span> <span class="mi">42</span><span class="p">,</span> <span class="s2">&quot;0.94&quot;</span><span class="p">,</span> <span class="n">source_file</span><span class="o">=</span><span class="s2">&quot;r.csv&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># claims.json now auto-exported under ./.scitex/clew/runtime/</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">clew</span><span class="o">.</span><span class="n">export_claims_json</span><span class="p">()</span>  <span class="c1"># idempotent — re-emit on demand</span>
+<span class="go">PosixPath(&#39;.../.scitex/clew/runtime/claims.json&#39;)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.register_intermediate">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">register_intermediate</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">supports</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">session_id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'value'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_register_intermediate.html#register_intermediate"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.register_intermediate" title="Link to this definition"></a></dt>
+<dd><p>Register a computed intermediate as a Clew claim.</p>
+<p>Use this from inside a <cite>&#64;stx.session</cite> script (or from an agent loop) to
+record any non-trivial intermediate value with explicit upstream support.
+The claim becomes part of the DAG and can be queried via <cite>clew.chain</cite>,
+<cite>clew.dag</cite>, or the MCP <cite>clew_chain</cite> / <cite>clew_dag</cite> tools.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Descriptive identifier (e.g. <cite>“acute_n_sig_pathways”</cite>). Avoid generic
+names like <cite>“result_3”</cite> — the id is the only handle a future inspector
+has on the value.</p></li>
+<li><p><strong>value</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – The computed result. Coerced to string for storage; the hash chain
+sees <cite>repr(value)</cite> so types matter.</p></li>
+<li><p><strong>supports</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – List of upstream claim ids or session ids that this value depends on.
+Stored as JSON in the claim’s value field for retrieval. None means
+no explicit upstream (use sparingly).</p></li>
+<li><p><strong>session_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – The session this value belongs to. If None, read from the
+<cite>SCITEX_SESSION_ID</cite> env var that <cite>&#64;stx.session</cite> sets at start.</p></li>
+<li><p><strong>claim_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – One of <cite>statistic</cite>, <cite>figure</cite>, <cite>table</cite>, <cite>text</cite>, <cite>value</cite>. Defaults to
+<cite>value</cite> since intermediates are usually scalar / categorical results.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The registered claim object.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Claim</span></code></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ValueError" title="(in Python v3.14)"><strong>ValueError</strong></a> – If no session_id can be determined (env var unset and not passed).</p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<p>Inside a <cite>&#64;stx.session</cite> script:</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_clew</span><span class="w"> </span><span class="kn">import</span> <span class="n">register_intermediate</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">n_sig</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="mi">1</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">pathways</span> <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">padj</span> <span class="o">&lt;</span> <span class="mf">0.05</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">register_intermediate</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="n">name</span><span class="o">=</span><span class="s2">&quot;chronic_r2_n_sig_pathways&quot;</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">value</span><span class="o">=</span><span class="n">n_sig</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">supports</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;chronic_r2_min_pvals&quot;</span><span class="p">,</span> <span class="s2">&quot;reactome_pathways_v2024&quot;</span><span class="p">],</span>
+<span class="gp">... </span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.stamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">stamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">backend</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'file'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">service_url</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">session_ids</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_stamp.html#stamp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.stamp" title="Link to this definition"></a></dt>
+<dd><p>Record root hash with external timestamp.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>backend</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – One of: file, rfc3161, zenodo.</p></li>
+<li><p><strong>service_url</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – URL for RFC 3161 TSA or Zenodo API.</p></li>
+<li><p><strong>session_ids</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – Specific sessions to stamp. If None, stamps all successful runs.</p></li>
+<li><p><strong>output_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Directory for file-based stamps (default: &lt;db_dir&gt;/stamps, i.e. .scitex/clew/runtime/stamps/).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The timestamp proof record.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Stamp</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.list_stamps">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">list_stamps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">limit</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_stamp.html#list_stamps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.list_stamps" title="Link to this definition"></a></dt>
+<dd><p>List all stamps.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<code class="xref py py-class docutils literal notranslate"><span class="pre">Stamp</span></code>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.check_stamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">check_stamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">stamp_id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_stamp.html#check_stamp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.check_stamp" title="Link to this definition"></a></dt>
+<dd><p>Verify a stamp against current verification state.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>stamp_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific stamp to check. If None, checks the latest stamp.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{stamp, current_root_hash, matches, details}</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.hash_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">hash_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">algorithm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sha256'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">chunk_size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">8192</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_hash.html#hash_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.hash_file" title="Link to this definition"></a></dt>
+<dd><p>Compute hash of a file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to the file to hash</p></li>
+<li><p><strong>algorithm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Hash algorithm (default: sha256)</p></li>
+<li><p><strong>chunk_size</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Size of chunks to read (default: 8192)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Hexadecimal hash string (first 32 characters)</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">hash_file</span><span class="p">(</span><span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+<span class="go">&#39;a1b2c3d4e5f6...&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.hash_directory">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">hash_directory</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pattern</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'*'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recursive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">algorithm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sha256'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_hash.html#hash_directory"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.hash_directory" title="Link to this definition"></a></dt>
+<dd><p>Compute hashes for all files in a directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Directory path</p></li>
+<li><p><strong>pattern</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Glob pattern for files (default: “*”)</p></li>
+<li><p><strong>recursive</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to search recursively (default: True)</p></li>
+<li><p><strong>algorithm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Hash algorithm (default: sha256)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Mapping of relative paths to hashes</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">hash_directory</span><span class="p">(</span><span class="s2">&quot;./data/&quot;</span><span class="p">)</span>
+<span class="go">{&#39;input.csv&#39;: &#39;a1b2...&#39;, &#39;config.yaml&#39;: &#39;c3d4...&#39;}</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.mermaid">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">mermaid</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">session_id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_files</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claims</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">grouper</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew.html#mermaid"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.mermaid" title="Link to this definition"></a></dt>
+<dd><p>Generate a Mermaid DAG diagram.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>session_id</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Start from this session.</p></li>
+<li><p><strong>target_file</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Start from the session that produced this file.</p></li>
+<li><p><strong>target_files</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><em>list</em></a><em> of </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Multiple target files (multi-target DAG).</p></li>
+<li><p><strong>claims</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a><em>, </em><em>optional</em>) – If True, build DAG from all registered claims.</p></li>
+<li><p><strong>grouper</strong> (<em>callable</em><em> | </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><em>dict</em></a><em> | </em><em>None</em><em>, </em><em>optional</em>) – File grouping strategy. Callable or JSON/dict spec (see
+<code class="docutils literal notranslate"><span class="pre">scitex_clew.groupers.resolve_spec</span></code>). If <code class="docutils literal notranslate"><span class="pre">None</span></code>, falls back to
+<code class="docutils literal notranslate"><span class="pre">.scitex/clew/config.yaml</span></code> (key <code class="docutils literal notranslate"><span class="pre">grouper</span></code>) if present.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.init_examples">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">init_examples</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dest</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">variant</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sequential'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">find_examples_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;function</span> <span class="pre">_find_examples_dir&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_examples.html#init_examples"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.init_examples" title="Link to this definition"></a></dt>
+<dd><p>Copy Clew example scripts to a destination directory.</p>
+<p>Copies only the runnable scripts (.py, .sh) and README — not
+the output directories.  Users run <code class="docutils literal notranslate"><span class="pre">00_run_all.sh</span></code> themselves
+to generate outputs and populate the verification database.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dest</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Destination directory.  Created if it does not exist.
+Existing script files are overwritten.</p></li>
+<li><p><strong>variant</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Example variant: “sequential” (default) or “multi_parent”.</p></li>
+<li><p><strong>find_examples_dir</strong> (<em>callable</em><em>, </em><em>optional</em>) – Locator callable <code class="docutils literal notranslate"><span class="pre">(variant:</span> <span class="pre">str)</span> <span class="pre">-&gt;</span> <span class="pre">Optional[Path]</span></code> used to
+resolve the bundled examples source. Production callers should
+not pass this; it is the canonical PA-306 §1 DI seam — tests
+inject a hand-rolled fake that returns a <code class="docutils literal notranslate"><span class="pre">tmp_path</span></code>-rooted
+directory or <code class="docutils literal notranslate"><span class="pre">None</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><code class="docutils literal notranslate"><span class="pre">{&quot;path&quot;:</span> <span class="pre">str,</span> <span class="pre">&quot;files&quot;:</span> <span class="pre">list[str],</span> <span class="pre">&quot;file_count&quot;:</span> <span class="pre">int,</span> <span class="pre">&quot;variant&quot;:</span> <span class="pre">str}</span></code></p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If the bundled examples cannot be located.</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ValueError" title="(in Python v3.14)"><strong>ValueError</strong></a> – If variant is not recognized.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.on_session_start">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">on_session_start</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">session_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">script_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parent_session</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_observers/_session.html#on_session_start"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.on_session_start" title="Link to this definition"></a></dt>
+<dd><p>Hook called when a session starts.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>session_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Unique session identifier</p></li>
+<li><p><strong>script_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Path to the script being run</p></li>
+<li><p><strong>parent_session</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Parent session ID for chain tracking</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to log status messages</p></li>
+<li><p><strong>metadata</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>]</span>) – Additional metadata (e.g. notebook_path, cell_index)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.on_session_close">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">on_session_close</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">status</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'success'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exit_code</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">register</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_clew/_observers/_session.html#on_session_close"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.on_session_close" title="Link to this definition"></a></dt>
+<dd><p>Hook called when a session closes.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>status</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Final status (success, failed, error)</p></li>
+<li><p><strong>exit_code</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Exit code of the script</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to log status messages</p></li>
+<li><p><strong>register</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>]</span>) – If True, register session hashes with remote Clew Registry.
+If None, checks SCITEX_AUTO_REGISTER environment variable.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="scitex.repro.html" class="btn btn-neutral float-left" title="scitex.repro API Reference" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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+    </div>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/api/scitex.config.html b/src/scitex/_sphinx_html/api/scitex.config.html
new file mode 100644
index 000000000..a4cb6ec0f
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.config.html
@@ -0,0 +1,1330 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.config API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="scitex.logging API Reference" href="scitex.logging.html" />
+    <link rel="prev" title="scitex.io API Reference" href="scitex.io.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">API Reference</a></li>
+      <li class="breadcrumb-item active">scitex.config API Reference</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/api/scitex.config.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.config">
+<span id="scitex-config-api-reference"></span><h1>scitex.config API Reference<a class="headerlink" href="#module-scitex.config" title="Link to this heading"></a></h1>
+<p>scitex-config — configuration helpers (YAML + dotenv) — standalone.</p>
+<p>Two distinct API surfaces:</p>
+<p><strong>Public</strong> (top-level <code class="docutils literal notranslate"><span class="pre">scitex_config.*</span></code>) — convention-free generic
+primitives usable by any Python project:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code> — direct → config_dict → env → default cascade</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code>, <code class="docutils literal notranslate"><span class="pre">get_config</span></code>, <code class="docutils literal notranslate"><span class="pre">load_yaml</span></code> — YAML-based config</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code>, <code class="docutils literal notranslate"><span class="pre">get_paths</span></code> — centralized path manager</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">load_dotenv</span></code>, <code class="docutils literal notranslate"><span class="pre">get_scitex_dir</span></code> — utilities</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">parse_src_file</span></code>, <code class="docutils literal notranslate"><span class="pre">load_env_from_path</span></code>, <code class="docutils literal notranslate"><span class="pre">load_scitex_env</span></code> — bash-style
+<code class="docutils literal notranslate"><span class="pre">.src</span></code>/<code class="docutils literal notranslate"><span class="pre">.env</span></code> parsing (canonical line/value parser; <code class="docutils literal notranslate"><span class="pre">load_dotenv</span></code> delegates)</p></li>
+</ul>
+<p><strong>SciTeX-ecosystem internals</strong> (<code class="docutils literal notranslate"><span class="pre">scitex_config._ecosystem.*</span></code>) — helpers
+that embed SciTeX conventions (<cite>pkg-short</cite> naming, project-scope walk to
+<code class="docutils literal notranslate"><span class="pre">.git/</span></code>, <code class="docutils literal notranslate"><span class="pre">_skills/&lt;pkg&gt;/</span></code> layout, <code class="docutils literal notranslate"><span class="pre">SCITEX_&lt;MODULE&gt;_*</span></code> env prefix).
+For scitex-* package authors only; <strong>not a stable public API</strong>:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_config._ecosystem</span><span class="w"> </span><span class="kn">import</span> <span class="n">local_state</span><span class="p">,</span> <span class="n">env_registry</span>
+</pre></div>
+</div>
+<dl>
+<dt><strong>Priority Order</strong> (same for <code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code> and <code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code>):</dt><dd><p>direct → config (YAML/dict) → env → default</p>
+</dd>
+<dt>Usage:</dt><dd><p>from scitex_config import ScitexConfig, ScitexPaths, get_config, get_paths</p>
+<p># YAML-based configuration (Scholar pattern)
+config = get_config()
+log_level = config.resolve(“logging.level”, default=”INFO”)</p>
+<p># Centralized path manager
+paths = get_paths()
+print(paths.logs)      # ~/.scitex/logs
+print(paths.cache)     # ~/.scitex/cache</p>
+<p># Use resolve() pattern in modules
+cache_dir = paths.resolve(“cache”, user_provided_path)</p>
+</dd>
+</dl>
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">ScitexConfig</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'SCITEX_'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_ScitexConfig.html#ScitexConfig"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>YAML-based configuration manager for SciTeX.</p>
+<p>Loads configuration from YAML files with environment variable substitution.
+Values can be resolved with priority: direct → config → env → default.</p>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.config</span><span class="w"> </span><span class="kn">import</span> <span class="n">ScitexConfig</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">config</span> <span class="o">=</span> <span class="n">ScitexConfig</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;logging.level&quot;</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="s2">&quot;INFO&quot;</span><span class="p">)</span>
+<span class="go">&#39;INFO&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;debug.enabled&quot;</span><span class="p">)</span>
+<span class="go">False</span>
+</pre></div>
+</div>
+</div>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'SCITEX_'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize ScitexConfig.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>config_path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Path to custom YAML config file. If None, uses default.yaml.</p></li>
+<li><p><strong>env_prefix</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Prefix for environment variables (default: “<a href="#id1"><span class="problematic" id="id2">SCITEX_</span></a>”)</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.get">
+<span class="sig-name descname"><span class="pre">get</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.get"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.get" title="Link to this definition"></a></dt>
+<dd><p>Get value from config directly (no precedence resolution).</p>
+<p>Supports dot notation for nested keys.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>key</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Configuration key (e.g., “logging.level” or “debug.enabled”)</p></li>
+<li><p><strong>default</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Default value if key not found</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Configuration value</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.resolve">
+<span class="sig-name descname"><span class="pre">resolve</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">direct_val</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;class</span> <span class="pre">'str'&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.resolve"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.resolve" title="Link to this definition"></a></dt>
+<dd><p>Resolve value with precedence: direct → config → env → default.</p>
+<p>This follows the Scholar module’s CascadeConfig pattern where
+YAML config takes higher priority than environment variables.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>key</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Configuration key (e.g., “logging.level”)</p></li>
+<li><p><strong>direct_val</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Direct value (highest precedence)</p></li>
+<li><p><strong>default</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Default value (lowest precedence)</p></li>
+<li><p><strong>type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Type" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Type</span></code></a></span>) – Type conversion (str, int, float, bool, list)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resolved value</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.get_nested">
+<span class="sig-name descname"><span class="pre">get_nested</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">keys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.get_nested"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.get_nested" title="Link to this definition"></a></dt>
+<dd><p>Get nested value from original config structure.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>*keys</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Keys to traverse (e.g., “browser”, “screenshots_dir”)</p></li>
+<li><p><strong>default</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Default value if not found</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Nested value</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.config_path">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">config_path</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexConfig.config_path" title="Link to this definition"></a></dt>
+<dd><p>Get the path to the loaded config file.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.raw">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">raw</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><span class="pre">dict</span></a></span><a class="headerlink" href="#scitex.config.ScitexConfig.raw" title="Link to this definition"></a></dt>
+<dd><p>Get raw configuration data (original nested structure).</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.flat">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">flat</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><span class="pre">dict</span></a></span><a class="headerlink" href="#scitex.config.ScitexConfig.flat" title="Link to this definition"></a></dt>
+<dd><p>Get flattened configuration data.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.print">
+<span class="sig-name descname"><span class="pre">print</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.print"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.print" title="Link to this definition"></a></dt>
+<dd><p>Print configuration resolution log.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.get_config">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">get_config</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_ScitexConfig.html#get_config"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.get_config" title="Link to this definition"></a></dt>
+<dd><p>Get ScitexConfig instance.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>config_path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Path to custom config. If None, returns cached default instance.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Configuration instance</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="../source/api/config.html#scitex.config.ScitexConfig" title="scitex_config._ScitexConfig.ScitexConfig"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.load_yaml">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">load_yaml</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_ScitexConfig.html#load_yaml"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.load_yaml" title="Link to this definition"></a></dt>
+<dd><p>Load YAML file with environment variable substitution.</p>
+<p>Supports ${VAR:-default} syntax for environment variable expansion.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to YAML file</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Parsed YAML with environment variables substituted</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">ScitexPaths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">base_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_paths.html#ScitexPaths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Centralized path manager for SciTeX directories.</p>
+<p>All paths are derived from SCITEX_DIR (default: ~/.scitex).
+Priority: direct_val → SCITEX_DIR env → .env file → default</p>
+<dl class="simple">
+<dt>Directory Structure:</dt><dd><p>$SCITEX_DIR/
+├── browser/              # Browser profiles and data
+│   ├── screenshots/      # Browser debugging screenshots
+│   ├── sessions/         # Shared browser sessions
+│   └── persistent/       # Persistent browser profiles
+├── cache/                # General cache
+│   └── functions/        # Function cache (joblib)
+├── capture/              # Screen captures
+├── impact_factor_cache/  # Impact factor data cache
+├── logs/                 # Log files
+├── openathens_cache/     # OpenAthens auth cache
+├── rng/                  # Random number generator state
+├── scholar/              # Scholar module data
+│   ├── cache/            # Scholar-specific cache
+│   └── library/          # PDF library
+├── screenshots/          # General screenshots
+├── test_monitor/         # Test monitoring screenshots
+└── writer/               # Writer module data</p>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">base_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_paths.html#ScitexPaths.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize ScitexPaths.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>base_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Explicit base directory. If None, uses SCITEX_DIR env var
+or falls back to ~/.scitex.</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.base">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">base</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.base" title="Link to this definition"></a></dt>
+<dd><p>Base SciTeX directory ($SCITEX_DIR or ~/.scitex).</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.logs">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">logs</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.logs" title="Link to this definition"></a></dt>
+<dd><p>Log files directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.cache" title="Link to this definition"></a></dt>
+<dd><p>General cache directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.capture">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">capture</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.capture" title="Link to this definition"></a></dt>
+<dd><p>Screen capture directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.screenshots">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">screenshots</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.screenshots" title="Link to this definition"></a></dt>
+<dd><p>General screenshots directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.rng">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">rng</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.rng" title="Link to this definition"></a></dt>
+<dd><p>Random number generator state directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.browser">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">browser</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.browser" title="Link to this definition"></a></dt>
+<dd><p>Browser module base directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.browser_screenshots">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">browser_screenshots</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.browser_screenshots" title="Link to this definition"></a></dt>
+<dd><p>Browser debugging screenshots.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.browser_sessions">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">browser_sessions</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.browser_sessions" title="Link to this definition"></a></dt>
+<dd><p>Shared browser sessions.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.browser_persistent">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">browser_persistent</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.browser_persistent" title="Link to this definition"></a></dt>
+<dd><p>Persistent browser profiles.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.test_monitor">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">test_monitor</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.test_monitor" title="Link to this definition"></a></dt>
+<dd><p>Test monitoring screenshots directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.function_cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">function_cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.function_cache" title="Link to this definition"></a></dt>
+<dd><p>Function cache (joblib memory).</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.impact_factor_cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">impact_factor_cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.impact_factor_cache" title="Link to this definition"></a></dt>
+<dd><p>Impact factor data cache.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.openathens_cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">openathens_cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.openathens_cache" title="Link to this definition"></a></dt>
+<dd><p>OpenAthens authentication cache.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.scholar">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">scholar</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.scholar" title="Link to this definition"></a></dt>
+<dd><p>Scholar module base directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.scholar_cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">scholar_cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.scholar_cache" title="Link to this definition"></a></dt>
+<dd><p>Scholar-specific cache directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.scholar_library">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">scholar_library</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.scholar_library" title="Link to this definition"></a></dt>
+<dd><p>Scholar PDF library directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.writer">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">writer</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.writer" title="Link to this definition"></a></dt>
+<dd><p>Writer module directory.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.resolve">
+<span class="sig-name descname"><span class="pre">resolve</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">direct_val</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_paths.html#ScitexPaths.resolve"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.resolve" title="Link to this definition"></a></dt>
+<dd><p>Resolve a path with priority: direct_val → default from SCITEX_DIR.</p>
+<p>This is the recommended method for modules that accept optional path
+parameters. It follows the same pattern as PriorityConfig.resolve().</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path_name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Name of the path property (e.g., “cache”, “logs”, “scholar_library”)</p></li>
+<li><p><strong>direct_val</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Direct value (highest precedence). If None, uses default.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resolved path</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">paths</span> <span class="o">=</span> <span class="n">ScitexPaths</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># User didn&#39;t provide path -&gt; use default</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">cache_dir</span> <span class="o">=</span> <span class="n">paths</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;cache&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># User provided custom path -&gt; use it</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">cache_dir</span> <span class="o">=</span> <span class="n">paths</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;cache&quot;</span><span class="p">,</span> <span class="s2">&quot;/custom/cache&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>Usage in modules:
+&gt;&gt;&gt; class MyModule:
+…     def __init__(self, cache_dir=None):
+…         self.cache_dir = get_paths().resolve(“cache”, cache_dir)</p>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.ensure_dir">
+<span class="sig-name descname"><span class="pre">ensure_dir</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_paths.html#ScitexPaths.ensure_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.ensure_dir" title="Link to this definition"></a></dt>
+<dd><p>Ensure directory exists, creating if necessary.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Directory path to ensure exists.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same path, guaranteed to exist.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.ensure_all">
+<span class="sig-name descname"><span class="pre">ensure_all</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_paths.html#ScitexPaths.ensure_all"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.ensure_all" title="Link to this definition"></a></dt>
+<dd><p>Create all standard directories.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.list_all">
+<span class="sig-name descname"><span class="pre">list_all</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_paths.html#ScitexPaths.list_all"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.list_all" title="Link to this definition"></a></dt>
+<dd><p>List all configured paths.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Dictionary of path names to Path objects.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.get_paths">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">get_paths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">base_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_paths.html#get_paths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.get_paths" title="Link to this definition"></a></dt>
+<dd><p>Get ScitexPaths instance.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>base_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Explicit base directory. If None, returns cached default instance.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Path manager instance.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="../source/api/config.html#scitex.config.ScitexPaths" title="scitex_config._paths.ScitexPaths"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">PriorityConfig</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_dict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auto_uppercase</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_PriorityConfig.html#PriorityConfig"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Universal config resolver with precedence: direct → config_dict → env → default</p>
+<p>Config dict (from YAML or passed dict) takes priority over env variables.
+This follows the Scholar module’s CascadeConfig pattern.</p>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_config</span><span class="w"> </span><span class="kn">import</span> <span class="n">PriorityConfig</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">config</span> <span class="o">=</span> <span class="n">PriorityConfig</span><span class="p">(</span><span class="n">config_dict</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;port&quot;</span><span class="p">:</span> <span class="mi">3000</span><span class="p">},</span> <span class="n">env_prefix</span><span class="o">=</span><span class="s2">&quot;SCITEX_&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">port</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;port&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="mi">8000</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
+<span class="go">3000  # from config_dict (highest after direct)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># With env: SCITEX_PORT=5000 python script.py</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">port</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;port&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="mi">8000</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
+<span class="go">3000  # config_dict takes precedence over env</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">port</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;port&quot;</span><span class="p">,</span> <span class="mi">9000</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="mi">8000</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
+<span class="go">9000  # direct value takes highest precedence</span>
+</pre></div>
+</div>
+</div>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS">
+<span class="sig-name descname"><span class="pre">SENSITIVE_EXPRESSIONS</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">['API',</span> <span class="pre">'PASSWORD',</span> <span class="pre">'SECRET',</span> <span class="pre">'TOKEN',</span> <span class="pre">'KEY',</span> <span class="pre">'PASS',</span> <span class="pre">'AUTH',</span> <span class="pre">'CREDENTIAL',</span> <span class="pre">'PRIVATE',</span> <span class="pre">'CERT']</span></span><a class="headerlink" href="#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_dict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auto_uppercase</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize PriorityConfig.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>config_dict</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]</span>) – Dictionary with configuration values</p></li>
+<li><p><strong>env_prefix</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Prefix for environment variables (e.g., “<a href="#id3"><span class="problematic" id="id4">SCITEX_</span></a>”)</p></li>
+<li><p><strong>auto_uppercase</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to uppercase keys for env lookup</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.get">
+<span class="sig-name descname"><span class="pre">get</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.get"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.get" title="Link to this definition"></a></dt>
+<dd><p>Get value from config dict only.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.resolve">
+<span class="sig-name descname"><span class="pre">resolve</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">direct_val</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;class</span> <span class="pre">'str'&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.resolve"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.resolve" title="Link to this definition"></a></dt>
+<dd><p>Get value with precedence hierarchy.</p>
+<p>Precedence: direct → config_dict → env → default</p>
+<p>This follows the Scholar module’s CascadeConfig pattern where
+config dict takes higher priority than environment variables.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>key</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Configuration key to resolve</p></li>
+<li><p><strong>direct_val</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Direct value (highest precedence)</p></li>
+<li><p><strong>default</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Default value if not found elsewhere</p></li>
+<li><p><strong>type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Type" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Type</span></code></a></span>) – Type conversion (str, int, float, bool, list)</p></li>
+<li><p><strong>mask</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>]</span>) – Override automatic masking of sensitive values</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resolved configuration value</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.print_resolutions">
+<span class="sig-name descname"><span class="pre">print_resolutions</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.print_resolutions"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.print_resolutions" title="Link to this definition"></a></dt>
+<dd><p>Print how each config was resolved.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.clear_log">
+<span class="sig-name descname"><span class="pre">clear_log</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.clear_log"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.clear_log" title="Link to this definition"></a></dt>
+<dd><p>Clear resolution log.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.get_scitex_dir">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">get_scitex_dir</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">direct_val</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_PriorityConfig.html#get_scitex_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.get_scitex_dir" title="Link to this definition"></a></dt>
+<dd><p>Get SCITEX_DIR with priority: direct → env → default.</p>
+<p>This is a convenience function for the most common use case.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>direct_val</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Direct value (highest precedence)</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resolved SCITEX_DIR path</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.load_dotenv">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">load_dotenv</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dotenv_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">walk_up</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stop_at</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_PriorityConfig.html#load_dotenv"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.load_dotenv" title="Link to this definition"></a></dt>
+<dd><p>Load environment variables from .env file(s).</p>
+<dl>
+<dt>Default behavior (<code class="docutils literal notranslate"><span class="pre">walk_up=False</span></code>, backward compatible):</dt><dd><p>Searches for .env file in the following order, loading the first match:
+1. Explicit <code class="docutils literal notranslate"><span class="pre">dotenv_path</span></code> if provided
+2. Current working directory (<code class="docutils literal notranslate"><span class="pre">cwd/.env</span></code>)
+3. User home directory (<code class="docutils literal notranslate"><span class="pre">$HOME/.env</span></code>)</p>
+</dd>
+<dt>Parent-walking behavior (<code class="docutils literal notranslate"><span class="pre">walk_up=True</span></code>, opt-in):</dt><dd><p>Walks parent directories starting from <code class="docutils literal notranslate"><span class="pre">cwd</span></code>, looking for <code class="docutils literal notranslate"><span class="pre">.env</span></code>
+at each level. Stops when reaching <code class="docutils literal notranslate"><span class="pre">stop_at</span></code> (or <code class="docutils literal notranslate"><span class="pre">$HOME</span></code> if not
+given) or the filesystem root. <strong>All</strong> <code class="docutils literal notranslate"><span class="pre">.env</span></code> files found are loaded,
+with the most-distant parent loaded first so that closer-to-cwd values
+take precedence (closer .env wins). An existing process env var is
+never overridden by any .env (process env &gt; closest .env &gt; … &gt; root .env).</p>
+<p>Note: <code class="docutils literal notranslate"><span class="pre">walk_up=True</span></code> is ignored if <code class="docutils literal notranslate"><span class="pre">dotenv_path</span></code> is explicitly given.</p>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dotenv_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Path to .env file. If None, searches default locations.</p></li>
+<li><p><strong>walk_up</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True (and <code class="docutils literal notranslate"><span class="pre">dotenv_path</span></code> not given), walk parent dirs from cwd.
+Default False for backward compatibility — new callers should pass True.</p></li>
+<li><p><strong>stop_at</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Directory at which to stop the upward walk (inclusive — its <code class="docutils literal notranslate"><span class="pre">.env</span></code>
+is considered). If None, stops at <code class="docutils literal notranslate"><span class="pre">$HOME</span></code> (or filesystem root if
+<code class="docutils literal notranslate"><span class="pre">$HOME</span></code> is not a parent of cwd). Only used when <code class="docutils literal notranslate"><span class="pre">walk_up=True</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>True if at least one .env file was found and loaded, False otherwise.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.parse_src_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">parse_src_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_env_loader.html#parse_src_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.parse_src_file" title="Link to this definition"></a></dt>
+<dd><p>Parse a bash-compatible <code class="docutils literal notranslate"><span class="pre">.src</span></code>/<code class="docutils literal notranslate"><span class="pre">.env</span></code> file and extract env variables.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>filepath</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to the file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Dictionary of variable names to values.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.load_env_from_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">load_env_from_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_env_loader.html#load_env_from_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.load_env_from_path" title="Link to this definition"></a></dt>
+<dd><p>Load environment variables from a file or directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Path to a <code class="docutils literal notranslate"><span class="pre">.src</span></code> file or directory containing <code class="docutils literal notranslate"><span class="pre">*.src</span></code> files.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>All loaded environment variables.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.load_scitex_env">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">load_scitex_env</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_config/_env_loader.html#load_scitex_env"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.load_scitex_env" title="Link to this definition"></a></dt>
+<dd><p>Load environment variables from <code class="docutils literal notranslate"><span class="pre">$SCITEX_ENV_SRC</span></code> if set.</p>
+<p>This function should be called early in the MCP server startup.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Number of environment variables loaded.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
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+           </div>
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="scitex.io.html" class="btn btn-neutral float-left" title="scitex.io API Reference" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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diff --git a/src/scitex/_sphinx_html/api/scitex.db.html b/src/scitex/_sphinx_html/api/scitex.db.html
new file mode 100644
index 000000000..1589ada33
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.db.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.db API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
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+    <link rel="next" title="scitex.dict API Reference" href="scitex.dict.html" />
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+</head>
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+<body class="wy-body-for-nav"> 
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+          
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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new file mode 100644
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+<!DOCTYPE html>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
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+        </div>
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+  <section id="module-scitex.decorators">
+<span id="scitex-decorators-api-reference"></span><h1>scitex.decorators API Reference<a class="headerlink" href="#module-scitex.decorators" title="Link to this heading"></a></h1>
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diff --git a/src/scitex/_sphinx_html/api/scitex.diagram.html b/src/scitex/_sphinx_html/api/scitex.diagram.html
new file mode 100644
index 000000000..f397a42a9
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+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/api/scitex.diagram.rst" class="fa fa-github"> Edit on GitHub</a>
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+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.diagram">
+<span id="scitex-diagram-api-reference"></span><h1>scitex.diagram API Reference<a class="headerlink" href="#module-scitex.diagram" title="Link to this heading"></a></h1>
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+    </div>
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+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/api/scitex.dict.html b/src/scitex/_sphinx_html/api/scitex.dict.html
new file mode 100644
index 000000000..71d8fc5b3
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.dict.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.dict API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="scitex.str API Reference" href="scitex.str.html" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
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+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
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diff --git a/src/scitex/_sphinx_html/api/scitex.dsp.html b/src/scitex/_sphinx_html/api/scitex.dsp.html
new file mode 100644
index 000000000..2fd42aa3f
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+++ b/src/scitex/_sphinx_html/api/scitex.dsp.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+  <title>scitex.dsp API Reference &mdash; SciTeX v0.0.0</title>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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new file mode 100644
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+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+  <title>scitex.gen API Reference &mdash; SciTeX v0.0.0</title>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
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+        </div>
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diff --git a/src/scitex/_sphinx_html/api/scitex.introspect.html b/src/scitex/_sphinx_html/api/scitex.introspect.html
new file mode 100644
index 000000000..a0c917cc2
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
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+
+        </div>
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+  <section id="module-scitex.introspect">
+<span id="scitex-introspect-api-reference"></span><h1>scitex.introspect API Reference<a class="headerlink" href="#module-scitex.introspect" title="Link to this heading"></a></h1>
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diff --git a/src/scitex/_sphinx_html/api/scitex.io.html b/src/scitex/_sphinx_html/api/scitex.io.html
new file mode 100644
index 000000000..2662c8502
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.io.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.io API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
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+    <link rel="next" title="scitex.config API Reference" href="scitex.config.html" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
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diff --git a/src/scitex/_sphinx_html/api/scitex.linter.html b/src/scitex/_sphinx_html/api/scitex.linter.html
new file mode 100644
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@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+  <title>scitex.linter &mdash; SciTeX v0.0.0</title>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
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new file mode 100644
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">API Reference</a></li>
+      <li class="breadcrumb-item active">scitex.logging API Reference</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/api/scitex.logging.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.logging">
+<span id="scitex-logging-api-reference"></span><h1>scitex.logging API Reference<a class="headerlink" href="#module-scitex.logging" title="Link to this heading"></a></h1>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.getLogger">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">getLogger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/logging.html#getLogger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.getLogger" title="Link to this definition"></a></dt>
+<dd><p>Return a logger with the specified name, creating it if necessary.</p>
+<p>If no name is specified, return the root logger.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.configure">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">configure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">level</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'info'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">enable_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">enable_console</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">capture_prints</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_file_size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10485760</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">backup_count</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">5</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_config.html#configure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.configure" title="Link to this definition"></a></dt>
+<dd><p>Configure logging for SciTeX with both console and file output.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>level</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Log level (string or logging constant)</p></li>
+<li><p><strong>log_file</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Path to log file (default: ~/.scitex/logs/scitex-YYYY-MM-DD.log)</p></li>
+<li><p><strong>enable_file</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to enable file logging</p></li>
+<li><p><strong>enable_console</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to enable console logging</p></li>
+<li><p><strong>capture_prints</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to capture print() statements to logs</p></li>
+<li><p><strong>max_file_size</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum size of log file before rotation (default: 10MB)</p></li>
+<li><p><strong>backup_count</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Number of backup files to keep (default: 5)</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.set_level">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">set_level</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">level</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_config.html#set_level"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.set_level" title="Link to this definition"></a></dt>
+<dd><p>Set global log level for all SciTeX loggers.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.get_level">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">get_level</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_config.html#get_level"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.get_level" title="Link to this definition"></a></dt>
+<dd><p>Get current global log level.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.enable_file_logging">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">enable_file_logging</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">enabled</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_config.html#enable_file_logging"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.enable_file_logging" title="Link to this definition"></a></dt>
+<dd><p>Enable or disable file logging globally.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.is_file_logging_enabled">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">is_file_logging_enabled</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_config.html#is_file_logging_enabled"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.is_file_logging_enabled" title="Link to this definition"></a></dt>
+<dd><p>Check if file logging is enabled.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.get_log_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">get_log_path</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_config.html#get_log_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.get_log_path" title="Link to this definition"></a></dt>
+<dd><p>Get the current log file path.</p>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.logging.Tee">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">Tee</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">stream</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_Tee.html#Tee"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.write">
+<span class="sig-name descname"><span class="pre">write</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_Tee.html#Tee.write"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.write" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.flush">
+<span class="sig-name descname"><span class="pre">flush</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_Tee.html#Tee.flush"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.flush" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.isatty">
+<span class="sig-name descname"><span class="pre">isatty</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_Tee.html#Tee.isatty"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.isatty" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.fileno">
+<span class="sig-name descname"><span class="pre">fileno</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_Tee.html#Tee.fileno"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.fileno" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.logging.Tee.buffer">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">buffer</span></span><a class="headerlink" href="#scitex.logging.Tee.buffer" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.close">
+<span class="sig-name descname"><span class="pre">close</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_Tee.html#Tee.close"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.close" title="Link to this definition"></a></dt>
+<dd><p>Explicitly close the log file.</p>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.tee">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">tee</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sdir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_Tee.html#tee"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.tee" title="Link to this definition"></a></dt>
+<dd><p>Redirects stdout and stderr to both console and log files.</p>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span> <span class="o">=</span> <span class="n">tee</span><span class="p">(</span><span class="n">sys</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="s2">&quot;abc&quot;</span><span class="p">)</span>  <span class="c1"># stdout</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">0</span><span class="p">)</span>  <span class="c1"># stderr</span>
+</pre></div>
+</div>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>sys_module</strong> (<em>module</em>) – System module containing stdout and stderr</p></li>
+<li><p><strong>sdir</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Directory for log files</p></li>
+<li><p><strong>verbose</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a><em>, </em><em>default=True</em>) – Whether to print log file locations</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Wrapped stdout and stderr objects</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)">tuple</a>[Any, Any]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.log_to_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">log_to_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">level</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'w'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">formatter</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_context.html#log_to_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.log_to_file" title="Link to this definition"></a></dt>
+<dd><p>Context manager to temporarily log all output to a specific file.</p>
+<dl>
+<dt>Usage:</dt><dd><p>import scitex_logging as logging
+logger = logging.getLogger(__name__)</p>
+<dl class="simple">
+<dt>with logging.log_to_file(“/path/to/log.txt”):</dt><dd><p>logger.info(“This goes to both console and /path/to/log.txt”)
+logger.success(“This too!”)</p>
+</dd>
+</dl>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to log file</p></li>
+<li><p><strong>level</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Logging level for this handler (default: DEBUG)</p></li>
+<li><p><strong>mode</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – File mode (‘w’ for overwrite, ‘a’ for append)</p></li>
+<li><p><strong>formatter</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/logging.html#logging.Formatter" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Formatter</span></code></a>]</span>) – Custom formatter (default: SciTeXFileFormatter)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Yields<span class="colon">:</span></dt>
+<dd class="field-even"><p><em>The file handler (can be ignored)</em></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SciTeXWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SciTeXWarning</span></span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#SciTeXWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SciTeXWarning" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/exceptions.html#UserWarning" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">UserWarning</span></code></a></p>
+<p>Base warning class for all SciTeX warnings.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.UnitWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">UnitWarning</span></span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#UnitWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.UnitWarning" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></p>
+<p>Warning for axis label unit issues (educational for SI conventions).</p>
+<p>Raised when:
+- Axis labels are missing units
+- Units use parentheses instead of brackets (SI prefers [])
+- Units use division instead of negative exponents (m/s vs m·s⁻¹)</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.StyleWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">StyleWarning</span></span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#StyleWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.StyleWarning" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></p>
+<p>Warning for style/formatting issues.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SciTeXDeprecationWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SciTeXDeprecationWarning</span></span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#SciTeXDeprecationWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SciTeXDeprecationWarning" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></p>
+<p>Warning for deprecated SciTeX features.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PerformanceWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PerformanceWarning</span></span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#PerformanceWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PerformanceWarning" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></p>
+<p>Warning for performance issues.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.DataLossWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">DataLossWarning</span></span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#DataLossWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.DataLossWarning" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></p>
+<p>Warning for potential data loss.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.warn">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">warn</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">category</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;class</span> <span class="pre">'scitex_logging._warnings.SciTeXWarning'&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stacklevel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#warn"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.warn" title="Link to this definition"></a></dt>
+<dd><p>Emit a warning (like warnings.warn but integrated with scitex.logging).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>message</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Warning message</p></li>
+<li><p><strong>category</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Type" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Type</span></code></a>[<a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a>]</span>) – Warning category (default: SciTeXWarning)</p></li>
+<li><p><strong>stacklevel</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Stack level for source location (default: 2 = caller)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">logging</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="kn">import</span> <span class="n">UnitWarning</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">logging</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;X axis has no units&quot;</span><span class="p">,</span> <span class="n">UnitWarning</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.filterwarnings">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">filterwarnings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">action</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">category</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;class</span> <span class="pre">'scitex_logging._warnings.SciTeXWarning'&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">message</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#filterwarnings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.filterwarnings" title="Link to this definition"></a></dt>
+<dd><p>Control warning behavior (like warnings.filterwarnings).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>action</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – One of:
+- “ignore”: Never show this warning
+- “error”: Raise as exception
+- “always”: Always show
+- “default”: Show first occurrence per location
+- “once”: Show only once total
+- “module”: Show once per module</p></li>
+<li><p><strong>category</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Type" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Type</span></code></a>[<a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a>]</span>) – Warning category (default: SciTeXWarning = all)</p></li>
+<li><p><strong>message</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Regex pattern to match warning message (not implemented yet)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">logging</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="kn">import</span> <span class="n">UnitWarning</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">logging</span><span class="o">.</span><span class="n">filterwarnings</span><span class="p">(</span><span class="s2">&quot;ignore&quot;</span><span class="p">,</span> <span class="n">category</span><span class="o">=</span><span class="n">UnitWarning</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.resetwarnings">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">resetwarnings</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#resetwarnings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.resetwarnings" title="Link to this definition"></a></dt>
+<dd><p>Reset all warning filters to default behavior.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.warn_deprecated">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">warn_deprecated</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">old_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">new_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#warn_deprecated"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.warn_deprecated" title="Link to this definition"></a></dt>
+<dd><p>Issue a deprecation warning.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.warn_performance">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">warn_performance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">operation</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#warn_performance"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.warn_performance" title="Link to this definition"></a></dt>
+<dd><p>Issue a performance warning.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.warn_data_loss">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">warn_data_loss</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">operation</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">detail</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_warnings.html#warn_data_loss"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.warn_data_loss" title="Link to this definition"></a></dt>
+<dd><p>Issue a data loss warning.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SciTeXError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SciTeXError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#SciTeXError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SciTeXError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/exceptions.html#Exception" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Exception</span></code></a></p>
+<p>Base Exception class for all SciTeX errors.</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.SciTeXError.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#SciTeXError.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SciTeXError.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize SciTeX error with detailed information.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>message</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – The error message</p></li>
+<li><p><strong>context</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>]</span>) – Additional context information (e.g., file paths, variable values)</p></li>
+<li><p><strong>suggestion</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Suggested fix or action</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ConfigurationError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ConfigurationError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#ConfigurationError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ConfigurationError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Raised when there are issues with SciTeX configuration.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ConfigFileNotFoundError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ConfigFileNotFoundError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#ConfigFileNotFoundError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ConfigFileNotFoundError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ConfigurationError" title="scitex_logging._errors.ConfigurationError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></p>
+<p>Raised when a required configuration file is not found.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ConfigKeyError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ConfigKeyError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">available_keys</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#ConfigKeyError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ConfigKeyError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ConfigurationError" title="scitex_logging._errors.ConfigurationError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></p>
+<p>Raised when a required configuration key is missing.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.IOError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">IOError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#IOError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.IOError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Base class for input/output related errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.FileFormatError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">FileFormatError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">expected_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">actual_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#FileFormatError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.FileFormatError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.IOError" title="scitex_logging._errors.IOError"><code class="xref py py-class docutils literal notranslate"><span class="pre">IOError</span></code></a></p>
+<p>Raised when file format is not supported or incorrect.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SaveError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SaveError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#SaveError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SaveError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.IOError" title="scitex_logging._errors.IOError"><code class="xref py py-class docutils literal notranslate"><span class="pre">IOError</span></code></a></p>
+<p>Raised when saving data fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.LoadError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">LoadError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#LoadError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.LoadError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.IOError" title="scitex_logging._errors.IOError"><code class="xref py py-class docutils literal notranslate"><span class="pre">IOError</span></code></a></p>
+<p>Raised when loading data fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ScholarError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ScholarError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#ScholarError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ScholarError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Base class for scholar module errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SearchError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SearchError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">query</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">source</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#SearchError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SearchError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ScholarError" title="scitex_logging._errors.ScholarError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScholarError</span></code></a></p>
+<p>Raised when paper search fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.EnrichmentError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">EnrichmentError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">paper_title</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#EnrichmentError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.EnrichmentError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ScholarError" title="scitex_logging._errors.ScholarError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScholarError</span></code></a></p>
+<p>Raised when paper enrichment fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PDFDownloadError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PDFDownloadError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">url</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#PDFDownloadError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PDFDownloadError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ScholarError" title="scitex_logging._errors.ScholarError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScholarError</span></code></a></p>
+<p>Raised when PDF download fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.DOIResolutionError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">DOIResolutionError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">doi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#DOIResolutionError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.DOIResolutionError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ScholarError" title="scitex_logging._errors.ScholarError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScholarError</span></code></a></p>
+<p>Raised when DOI resolution fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PDFExtractionError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PDFExtractionError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#PDFExtractionError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PDFExtractionError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ScholarError" title="scitex_logging._errors.ScholarError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScholarError</span></code></a></p>
+<p>Raised when PDF text extraction fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.BibTeXEnrichmentError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">BibTeXEnrichmentError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">bibtex_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#BibTeXEnrichmentError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.BibTeXEnrichmentError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ScholarError" title="scitex_logging._errors.ScholarError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScholarError</span></code></a></p>
+<p>Raised when BibTeX enrichment fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.TranslatorError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">TranslatorError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">translator_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#TranslatorError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.TranslatorError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ScholarError" title="scitex_logging._errors.ScholarError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScholarError</span></code></a></p>
+<p>Raised when Zotero translator operations fail.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.AuthenticationError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">AuthenticationError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">provider</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#AuthenticationError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.AuthenticationError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.ScholarError" title="scitex_logging._errors.ScholarError"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScholarError</span></code></a></p>
+<p>Raised when authentication fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PlottingError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PlottingError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#PlottingError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PlottingError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Base class for plotting-related errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.FigureNotFoundError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">FigureNotFoundError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fig_id</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#FigureNotFoundError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.FigureNotFoundError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.PlottingError" title="scitex_logging._errors.PlottingError"><code class="xref py py-class docutils literal notranslate"><span class="pre">PlottingError</span></code></a></p>
+<p>Raised when attempting to operate on a non-existent figure.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.AxisError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">AxisError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">axis_info</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#AxisError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.AxisError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.PlottingError" title="scitex_logging._errors.PlottingError"><code class="xref py py-class docutils literal notranslate"><span class="pre">PlottingError</span></code></a></p>
+<p>Raised when there are issues with plot axes.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.DataError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">DataError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#DataError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.DataError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Base class for data processing errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ShapeError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ShapeError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">expected_shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">actual_shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">operation</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#ShapeError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ShapeError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.DataError" title="scitex_logging._errors.DataError"><code class="xref py py-class docutils literal notranslate"><span class="pre">DataError</span></code></a></p>
+<p>Raised when data shapes are incompatible.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.DTypeError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">DTypeError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">expected_dtype</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">actual_dtype</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">operation</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#DTypeError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.DTypeError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.DataError" title="scitex_logging._errors.DataError"><code class="xref py py-class docutils literal notranslate"><span class="pre">DataError</span></code></a></p>
+<p>Raised when data types are incompatible.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PathError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PathError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#PathError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PathError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Base class for path-related errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.InvalidPathError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">InvalidPathError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#InvalidPathError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.InvalidPathError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.PathError" title="scitex_logging._errors.PathError"><code class="xref py py-class docutils literal notranslate"><span class="pre">PathError</span></code></a></p>
+<p>Raised when a path is invalid or doesn’t follow SciTeX conventions.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PathNotFoundError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PathNotFoundError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#PathNotFoundError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PathNotFoundError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.PathError" title="scitex_logging._errors.PathError"><code class="xref py py-class docutils literal notranslate"><span class="pre">PathError</span></code></a></p>
+<p>Raised when a required path doesn’t exist.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.TemplateError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">TemplateError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#TemplateError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.TemplateError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Base class for template-related errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.TemplateViolationError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">TemplateViolationError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">violation</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#TemplateViolationError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.TemplateViolationError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.TemplateError" title="scitex_logging._errors.TemplateError"><code class="xref py py-class docutils literal notranslate"><span class="pre">TemplateError</span></code></a></p>
+<p>Raised when SciTeX template is not followed.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.NNError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">NNError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#NNError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.NNError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Base class for neural network module errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ModelError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ModelError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">model_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#ModelError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ModelError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.NNError" title="scitex_logging._errors.NNError"><code class="xref py py-class docutils literal notranslate"><span class="pre">NNError</span></code></a></p>
+<p>Raised when there are issues with neural network models.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.StatsError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">StatsError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#StatsError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.StatsError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.SciTeXError" title="scitex_logging._errors.SciTeXError"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXError</span></code></a></p>
+<p>Base class for statistics module errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.TestError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">TestError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">test_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#TestError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.TestError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="../source/api/logging.html#scitex.logging.StatsError" title="scitex_logging._errors.StatsError"><code class="xref py py-class docutils literal notranslate"><span class="pre">StatsError</span></code></a></p>
+<p>Raised when statistical tests fail.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.check_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">check_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#check_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.check_path" title="Link to this definition"></a></dt>
+<dd><p>Validate a path according to SciTeX conventions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.check_file_exists">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">check_file_exists</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#check_file_exists"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.check_file_exists" title="Link to this definition"></a></dt>
+<dd><p>Check if a file exists.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.check_shape_compatibility">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">check_shape_compatibility</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">shape1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shape2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">operation</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_logging/_errors.html#check_shape_compatibility"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.check_shape_compatibility" title="Link to this definition"></a></dt>
+<dd><p>Check if two shapes are compatible for an operation.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="scitex.config.html" class="btn btn-neutral float-left" title="scitex.config API Reference" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="scitex.repro.html" class="btn btn-neutral float-right" title="scitex.repro API Reference" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
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+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/api/scitex.nn.html b/src/scitex/_sphinx_html/api/scitex.nn.html
new file mode 100644
index 000000000..cbdd40de0
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.nn.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.nn API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="scitex.template API Reference" href="scitex.template.html" />
+    <link rel="prev" title="scitex.ai API Reference" href="scitex.ai.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
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new file mode 100644
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">API Reference</a></li>
+      <li class="breadcrumb-item active">scitex.path API Reference</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/api/scitex.path.rst" class="fa fa-github"> Edit on GitHub</a>
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+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.path">
+<span id="scitex-path-api-reference"></span><h1>scitex.path API Reference<a class="headerlink" href="#module-scitex.path" title="Link to this heading"></a></h1>
+<p>scitex-path: Scientific project path utilities (find, split, symlink, versioning).</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.clean">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">clean</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path_string</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_clean.html#clean"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.clean" title="Link to this definition"></a></dt>
+<dd><p>Cleans and normalizes a file system path string.</p>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">clean</span><span class="p">(</span><span class="s1">&#39;/home/user/./folder/../file.txt&#39;</span><span class="p">)</span>
+<span class="go">&#39;/home/user/file.txt&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">clean</span><span class="p">(</span><span class="s1">&#39;path/./to//file.txt&#39;</span><span class="p">)</span>
+<span class="go">&#39;path/to/file.txt&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">clean</span><span class="p">(</span><span class="s1">&#39;path with spaces&#39;</span><span class="p">)</span>
+<span class="go">&#39;path_with_spaces&#39;</span>
+</pre></div>
+</div>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path_string</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – File path to clean</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Normalized path string</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.create_relative_symlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">create_relative_symlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dst</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_symlink.html#create_relative_symlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.create_relative_symlink" title="Link to this definition"></a></dt>
+<dd><p>Create a relative symbolic link.</p>
+<p>This is a convenience wrapper around symlink() with relative=True.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>src</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Source path (target of the symlink)</p></li>
+<li><p><strong>dst</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Destination path (the symlink to create)</p></li>
+<li><p><strong>overwrite</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, remove existing dst before creating symlink</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path object of the created symlink</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.find_dir">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">find_dir</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exp</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_find.html#find_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.find_dir" title="Link to this definition"></a></dt>
+<dd><p>Find directories matching pattern.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.find_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">find_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exp</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_find.html#find_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.find_file" title="Link to this definition"></a></dt>
+<dd><p>Find files matching pattern.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.find_git_root">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">find_git_root</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_find.html#find_git_root"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.find_git_root" title="Link to this definition"></a></dt>
+<dd><p>Find the root directory of the current git repository.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path to the git repository root.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.find_latest">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">find_latest</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dirname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ext</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">version_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'_v'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_version.html#find_latest"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.find_latest" title="Link to this definition"></a></dt>
+<dd><p>Find the latest versioned file in a directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dirname</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – Directory to search in.</p></li>
+<li><p><strong>fname</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – Base filename without version number or extension.</p></li>
+<li><p><strong>ext</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – File extension including the dot (e.g., ‘.txt’).</p></li>
+<li><p><strong>version_prefix</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Prefix before the version number. Default is ‘_v’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Path to the latest versioned file, or None if not found.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a> or None</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.fix_broken_symlinks">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">fix_broken_symlinks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">directory</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recursive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">remove</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">new_target</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_symlink.html#fix_broken_symlinks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.fix_broken_symlinks" title="Link to this definition"></a></dt>
+<dd><p>Find and optionally fix broken symbolic links.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>directory</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Directory to search</p></li>
+<li><p><strong>recursive</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, search recursively</p></li>
+<li><p><strong>remove</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, remove broken symlinks</p></li>
+<li><p><strong>new_target</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – If provided, repoint broken symlinks to this target</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Dictionary with ‘found’, ‘fixed’, and ‘removed’ lists of paths</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.get_data_path_from_a_package">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">get_data_path_from_a_package</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">package_str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">resource</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_get_module_path.html#get_data_path_from_a_package"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.get_data_path_from_a_package" title="Link to this definition"></a></dt>
+<dd><p>Get the path to a data file within a package.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>package_str</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – The name of the package as a string.</p></li>
+<li><p><strong>resource</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – The name of the resource file within the package’s data directory.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The full path to the resource file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ImportError" title="(in Python v3.14)"><strong>ImportError</strong></a> – If the specified package cannot be found.</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If the resource file does not exist in the package’s data directory.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.get_spath">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">get_spath</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sfname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">makedirs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.path.get_spath" title="Link to this definition"></a></dt>
+<dd><p>Create a save path based on the calling script’s location.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>sfname</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – The name of the file to be saved.</p></li>
+<li><p><strong>makedirs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, create the directory structure for the save path.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The full save path for the file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">spath</span> <span class="o">=</span> <span class="n">mk_spath</span><span class="p">(</span><span class="s1">&#39;output.txt&#39;</span><span class="p">,</span> <span class="n">makedirs</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.get_this_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">get_this_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ipython_fake_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/tmp/fake.py'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.path.get_this_path" title="Link to this definition"></a></dt>
+<dd><p>Get the path of the calling script.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>This function historically captures the caller’s filename via
+<code class="docutils literal notranslate"><span class="pre">inspect.stack()[1]</span></code> but then returns this module’s <code class="docutils literal notranslate"><span class="pre">__file__</span></code>.
+The tests codify that legacy behavior; do not change without
+updating callers.</p>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.getsize">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">getsize</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_getsize.html#getsize"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.getsize" title="Link to this definition"></a></dt>
+<dd><p>Get file size in bytes.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>File size in bytes, or math.nan if file doesn’t exist.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a>]</span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#PermissionError" title="(in Python v3.14)"><strong>PermissionError</strong></a> – If the file cannot be accessed due to permissions.</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.increment_version">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">increment_version</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dirname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ext</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">version_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'_v'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_version.html#increment_version"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.increment_version" title="Link to this definition"></a></dt>
+<dd><p>Generate the next version of a filename based on existing versioned files.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dirname</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – Directory to search in.</p></li>
+<li><p><strong>fname</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – Base filename without version number or extension.</p></li>
+<li><p><strong>ext</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – File extension including the dot (e.g., ‘.txt’).</p></li>
+<li><p><strong>version_prefix</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Prefix before the version number. Default is ‘_v’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Full path for the next version of the file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">increment_version</span><span class="p">(</span><span class="s1">&#39;/path/to/dir&#39;</span><span class="p">,</span> <span class="s1">&#39;myfile&#39;</span><span class="p">,</span> <span class="s1">&#39;.txt&#39;</span><span class="p">)</span>
+<span class="go">&#39;/path/to/dir/myfile_v001.txt&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.is_symlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">is_symlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_symlink.html#is_symlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.is_symlink" title="Link to this definition"></a></dt>
+<dd><p>Check if a path is a symbolic link.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to check</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>True if path is a symlink, False otherwise</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.list_symlinks">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">list_symlinks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">directory</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recursive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_symlink.html#list_symlinks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.list_symlinks" title="Link to this definition"></a></dt>
+<dd><p>List all symbolic links in a directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>directory</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Directory to search</p></li>
+<li><p><strong>recursive</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, search recursively</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>List of Path objects for all symlinks found</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.mk_spath">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">mk_spath</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sfname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">makedirs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_mk_spath.html#mk_spath"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.mk_spath" title="Link to this definition"></a></dt>
+<dd><p>Create a save path based on the calling script’s location.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>sfname</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – The name of the file to be saved.</p></li>
+<li><p><strong>makedirs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, create the directory structure for the save path.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The full save path for the file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">spath</span> <span class="o">=</span> <span class="n">mk_spath</span><span class="p">(</span><span class="s1">&#39;output.txt&#39;</span><span class="p">,</span> <span class="n">makedirs</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.readlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">readlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_symlink.html#readlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.readlink" title="Link to this definition"></a></dt>
+<dd><p>Return the path to which the symbolic link points.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Symlink path to read</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path object pointing to the symlink target</p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#OSError" title="(in Python v3.14)"><strong>OSError</strong></a> – If path is not a symlink</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.resolve_symlinks">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">resolve_symlinks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_symlink.html#resolve_symlinks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.resolve_symlinks" title="Link to this definition"></a></dt>
+<dd><p>Resolve all symbolic links in a path.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path potentially containing symlinks</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Fully resolved absolute path</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.split">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">split</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fpath</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_split.html#split"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.split" title="Link to this definition"></a></dt>
+<dd><p>Split a file path into directory, filename, and extension.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>fpath</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – File path to split.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(directory with trailing slash, filename without extension, extension)</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">dirname</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">ext</span> <span class="o">=</span> <span class="n">split</span><span class="p">(</span><span class="s1">&#39;/path/to/file.txt&#39;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">dirname</span>
+<span class="go">&#39;/path/to/&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">fname</span>
+<span class="go">&#39;file&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">ext</span>
+<span class="go">&#39;.txt&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.symlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">symlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dst</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_is_directory</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">relative</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_symlink.html#symlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.symlink" title="Link to this definition"></a></dt>
+<dd><p>Create a symbolic link pointing to src named dst.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>src</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Source path (target of the symlink)</p></li>
+<li><p><strong>dst</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Destination path (the symlink to create)</p></li>
+<li><p><strong>overwrite</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, remove existing dst before creating symlink</p></li>
+<li><p><strong>target_is_directory</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>]</span>) – On Windows, specify if target is directory (auto-detected if None)</p></li>
+<li><p><strong>relative</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, create relative symlink instead of absolute</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path object of the created symlink</p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileExistsError" title="(in Python v3.14)"><strong>FileExistsError</strong></a> – If dst exists and overwrite=False</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If src doesn’t exist</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#OSError" title="(in Python v3.14)"><strong>OSError</strong></a> – If symlink creation fails</p></li>
+</ul>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_path</span><span class="w"> </span><span class="kn">import</span> <span class="n">symlink</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Create absolute symlink</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">symlink</span><span class="p">(</span><span class="s2">&quot;/path/to/source&quot;</span><span class="p">,</span> <span class="s2">&quot;/path/to/link&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># Create relative symlink</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">symlink</span><span class="p">(</span><span class="s2">&quot;../source&quot;</span><span class="p">,</span> <span class="s2">&quot;link&quot;</span><span class="p">,</span> <span class="n">relative</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># Overwrite existing symlink</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">symlink</span><span class="p">(</span><span class="s2">&quot;/path/to/new_source&quot;</span><span class="p">,</span> <span class="s2">&quot;/path/to/link&quot;</span><span class="p">,</span> <span class="n">overwrite</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.this_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">this_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ipython_fake_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/tmp/fake.py'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_this_path.html#this_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.this_path" title="Link to this definition"></a></dt>
+<dd><p>Get the path of the calling script.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>This function historically captures the caller’s filename via
+<code class="docutils literal notranslate"><span class="pre">inspect.stack()[1]</span></code> but then returns this module’s <code class="docutils literal notranslate"><span class="pre">__file__</span></code>.
+The tests codify that legacy behavior; do not change without
+updating callers.</p>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.unlink_symlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">unlink_symlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">missing_ok</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_path/_symlink.html#unlink_symlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.unlink_symlink" title="Link to this definition"></a></dt>
+<dd><p>Remove a symbolic link.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Symlink to remove</p></li>
+<li><p><strong>missing_ok</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, don’t raise error if symlink doesn’t exist</p></li>
+</ul>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If symlink doesn’t exist and missing_ok=False</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#OSError" title="(in Python v3.14)"><strong>OSError</strong></a> – If path is not a symlink</p></li>
+</ul>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
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+           </div>
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="scitex.str.html" class="btn btn-neutral float-left" title="scitex.str API Reference" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/api/scitex.pd.html b/src/scitex/_sphinx_html/api/scitex.pd.html
new file mode 100644
index 000000000..667923e7f
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+++ b/src/scitex/_sphinx_html/api/scitex.pd.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <title>scitex.pd API Reference &mdash; SciTeX v0.0.0</title>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
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+<!DOCTYPE html>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">API Reference</a></li>
+      <li class="breadcrumb-item active">scitex.plt API Reference</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/api/scitex.plt.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="scitex-plt-api-reference">
+<h1>scitex.plt API Reference<a class="headerlink" href="#scitex-plt-api-reference" title="Link to this heading"></a></h1>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">scitex.plt</span></code> wraps matplotlib with data-tracking axes. The plotting API
+is migrating to <a class="reference external" href="https://github.com/ywatanabe1989/figrecipe">figrecipe</a>.
+See <a class="reference internal" href="../modules/plt.html"><span class="doc">PLT Module (stx.plt)</span></a> for usage documentation.</p>
+</div>
+<span class="target" id="module-scitex.plt"></span></section>
+
+
+           </div>
+          </div>
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new file mode 100644
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@@ -0,0 +1,1139 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+  <title>scitex.repro API Reference &mdash; SciTeX v0.0.0</title>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">API Reference</a></li>
+      <li class="breadcrumb-item active">scitex.repro API Reference</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/api/scitex.repro.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.repro">
+<span id="scitex-repro-api-reference"></span><h1>scitex.repro API Reference<a class="headerlink" href="#module-scitex.repro" title="Link to this heading"></a></h1>
+<p>scitex-repro — Reproducibility utilities for scientific computing.</p>
+<p>Provides tools for reproducible scientific computing:
+- Random state management (RandomStateManager)
+- ID generation (gen_ID)
+- Timestamp generation (gen_timestamp)
+- Array hashing (hash_array)</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.gen_ID">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">gen_ID</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">time_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'%YY-%mM-%dD-%Hh%Mm%Ss'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">N</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">8</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.repro.gen_ID" title="Link to this definition"></a></dt>
+<dd><p>Generate a unique identifier with timestamp and random characters.</p>
+<p>Creates a unique ID by combining a formatted timestamp with random
+alphanumeric characters. Useful for creating unique experiment IDs,
+run identifiers, or temporary file names.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>time_format</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Format string for timestamp portion. Default is “%YY-%mM-%dD-%Hh%Mm%Ss”
+which produces “2025Y-05M-31D-12h30m45s” format.</p></li>
+<li><p><strong>N</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><em>int</em></a><em>, </em><em>optional</em>) – Number of random characters to append. Default is 8.</p></li>
+<li><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unique identifier in format “{timestamp}_{random_chars}”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id1</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id1</span><span class="p">)</span>
+<span class="go">&#39;2025Y-05M-31D-12h30m45s_a3Bc9xY2&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id2</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">(</span><span class="n">time_format</span><span class="o">=</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">N</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id2</span><span class="p">)</span>
+<span class="go">&#39;20250531_xY9a&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># For experiment tracking</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">exp_id</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">save_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;results/experiment_</span><span class="si">{</span><span class="n">exp_id</span><span class="si">}</span><span class="s2">.pkl&quot;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.gen_id">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">gen_id</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">time_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'%YY-%mM-%dD-%Hh%Mm%Ss'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">N</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">8</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_gen_ID.html#gen_id"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.gen_id" title="Link to this definition"></a></dt>
+<dd><p>Generate a unique identifier with timestamp and random characters.</p>
+<p>Creates a unique ID by combining a formatted timestamp with random
+alphanumeric characters. Useful for creating unique experiment IDs,
+run identifiers, or temporary file names.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>time_format</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Format string for timestamp portion. Default is “%YY-%mM-%dD-%Hh%Mm%Ss”
+which produces “2025Y-05M-31D-12h30m45s” format.</p></li>
+<li><p><strong>N</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><em>int</em></a><em>, </em><em>optional</em>) – Number of random characters to append. Default is 8.</p></li>
+<li><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unique identifier in format “{timestamp}_{random_chars}”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id1</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id1</span><span class="p">)</span>
+<span class="go">&#39;2025Y-05M-31D-12h30m45s_a3Bc9xY2&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id2</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">(</span><span class="n">time_format</span><span class="o">=</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">N</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id2</span><span class="p">)</span>
+<span class="go">&#39;20250531_xY9a&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># For experiment tracking</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">exp_id</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">save_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;results/experiment_</span><span class="si">{</span><span class="n">exp_id</span><span class="si">}</span><span class="s2">.pkl&quot;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.gen_timestamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">gen_timestamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_gen_timestamp.html#gen_timestamp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.gen_timestamp" title="Link to this definition"></a></dt>
+<dd><p>Generate a timestamp string for file naming.</p>
+<p>Returns a timestamp in the format YYYY-MMDD-HHMM, suitable for
+creating unique filenames or version identifiers.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Timestamp string in format “YYYY-MMDD-HHMM”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">timestamp</span> <span class="o">=</span> <span class="n">gen_timestamp</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">timestamp</span><span class="p">)</span>
+<span class="go">&#39;2025-0531-1230&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">filename</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;experiment_</span><span class="si">{</span><span class="n">gen_timestamp</span><span class="p">()</span><span class="si">}</span><span class="s2">.csv&quot;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+<span class="go">&#39;experiment_2025-0531-1230.csv&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.timestamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">timestamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.repro.timestamp" title="Link to this definition"></a></dt>
+<dd><p>Generate a timestamp string for file naming.</p>
+<p>Returns a timestamp in the format YYYY-MMDD-HHMM, suitable for
+creating unique filenames or version identifiers.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Timestamp string in format “YYYY-MMDD-HHMM”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">timestamp</span> <span class="o">=</span> <span class="n">gen_timestamp</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">timestamp</span><span class="p">)</span>
+<span class="go">&#39;2025-0531-1230&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">filename</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;experiment_</span><span class="si">{</span><span class="n">gen_timestamp</span><span class="p">()</span><span class="si">}</span><span class="s2">.csv&quot;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+<span class="go">&#39;experiment_2025-0531-1230.csv&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.hash_array">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">hash_array</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">array_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_hash_array.html#hash_array"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.hash_array" title="Link to this definition"></a></dt>
+<dd><p>Generate hash for array data.</p>
+<p>Creates a deterministic hash for numpy arrays, useful for
+verifying data integrity and reproducibility.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>array_data</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Array to hash</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>16-character hash string</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">])</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash1</span> <span class="o">=</span> <span class="n">hash_array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash2</span> <span class="o">=</span> <span class="n">hash_array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash1</span> <span class="o">==</span> <span class="n">hash2</span>
+<span class="go">True</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">RandomStateManager</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Simple, robust random state manager for scientific computing.</p>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">RandomStateManager</span>
+<span class="gp">&gt;&gt;&gt;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Method 1: Direct usage</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">rng</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Verify reproducibility</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;my_data&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize with automatic module detection.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.get_np_generator">
+<span class="sig-name descname"><span class="pre">get_np_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_np_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.get_np_generator" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named NumPy random generator.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name (e.g., “data”, “model”, “augment”)</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Independent NumPy random generator</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://numpy.org/doc/stable/reference/random/generator.html#numpy.random.Generator" title="(in NumPy v2.4)">numpy.random.Generator</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">values</span> <span class="o">=</span> <span class="n">gen</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">perm</span> <span class="o">=</span> <span class="n">gen</span><span class="o">.</span><span class="n">permutation</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.__call__">
+<span class="sig-name descname"><span class="pre">__call__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.__call__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.__call__" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named NumPy random generator.</p>
+<p>This is a backward compatibility wrapper for get_np_generator().
+Consider using get_np_generator() directly for clarity.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to show deprecation warning</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>NumPy random generator with deterministic seed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://numpy.org/doc/stable/reference/random/generator.html#numpy.random.Generator" title="(in NumPy v2.4)">numpy.random.Generator</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.verify">
+<span class="sig-name descname"><span class="pre">verify</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">obj</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.verify"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.verify" title="Link to this definition"></a></dt>
+<dd><p>Verify object matches cached hash (detects broken reproducibility).</p>
+<p>First call: caches the object’s hash
+Later calls: verifies object matches cached hash</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>obj</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Object to verify (array, tensor, data, model weights, etc.)
+Supports: numpy arrays, torch tensors, tf tensors, jax arrays,
+lists, dicts, pandas dataframes, and basic types</p></li>
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Cache name. Auto-generated if not provided.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>True if matches cache (or first call), False if different</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">generate_data</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># First run: caches</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Next run:</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># Verifies match</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.checkpoint">
+<span class="sig-name descname"><span class="pre">checkpoint</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'checkpoint'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.checkpoint"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.checkpoint" title="Link to this definition"></a></dt>
+<dd><p>Save current state of all generators.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.restore">
+<span class="sig-name descname"><span class="pre">restore</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">checkpoint</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.restore"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.restore" title="Link to this definition"></a></dt>
+<dd><p>Restore from checkpoint.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.temporary_seed">
+<span class="sig-name descname"><span class="pre">temporary_seed</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.temporary_seed"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.temporary_seed" title="Link to this definition"></a></dt>
+<dd><p>Context manager for temporary seed change.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.get_sklearn_random_state">
+<span class="sig-name descname"><span class="pre">get_sklearn_random_state</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_sklearn_random_state"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.get_sklearn_random_state" title="Link to this definition"></a></dt>
+<dd><p>Get a random state for scikit-learn.</p>
+<p>Scikit-learn uses integers for random_state parameter.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Random state integer for sklearn</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)">int</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">sklearn.model_selection</span><span class="w"> </span><span class="kn">import</span> <span class="n">train_test_split</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">X_train</span><span class="p">,</span> <span class="n">X_test</span> <span class="o">=</span> <span class="n">train_test_split</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="n">X</span><span class="p">,</span> <span class="n">test_size</span><span class="o">=</span><span class="mf">0.2</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">random_state</span><span class="o">=</span><span class="n">rng</span><span class="o">.</span><span class="n">get_sklearn_random_state</span><span class="p">(</span><span class="s2">&quot;split&quot;</span><span class="p">)</span>
+<span class="gp">... </span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.get_torch_generator">
+<span class="sig-name descname"><span class="pre">get_torch_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_torch_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.get_torch_generator" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named PyTorch generator.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>PyTorch generator with deterministic seed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.pytorch.org/docs/stable/generated/torch.Generator.html#torch.Generator" title="(in PyTorch v2.12)">torch.Generator</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_torch_generator</span><span class="p">(</span><span class="s2">&quot;model&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">torch</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span> <span class="mi">5</span><span class="p">,</span> <span class="n">generator</span><span class="o">=</span><span class="n">gen</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.get_generator">
+<span class="sig-name descname"><span class="pre">get_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.get_generator" title="Link to this definition"></a></dt>
+<dd><p>Alias for get_np_generator for compatibility.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.clear_cache">
+<span class="sig-name descname"><span class="pre">clear_cache</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">patterns</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.clear_cache"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.clear_cache" title="Link to this definition"></a></dt>
+<dd><p>Clear verification cache files.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>patterns</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific cache patterns to clear. If None, clears all.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Number of cache files removed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.get">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">get</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#get"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.get" title="Link to this definition"></a></dt>
+<dd><p>Get or create the global RandomStateManager instance.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to print status messages (default: False)</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Global instance</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="../source/api/rng.html#scitex.rng.RandomStateManager" title="scitex_repro._RandomStateManager.RandomStateManager"><code class="xref py py-class docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">get</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">get</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">rng</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.reset">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">reset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro/_RandomStateManager.html#reset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.reset" title="Link to this definition"></a></dt>
+<dd><p>Reset global RandomStateManager with new seed.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>seed</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – New seed value</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to print status messages (default: False)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>New global instance</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="../source/api/rng.html#scitex.rng.RandomStateManager" title="scitex_repro._RandomStateManager.RandomStateManager"><code class="xref py py-class docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">reset</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">reset</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">123</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.fix_seeds">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">fix_seeds</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">os</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">random</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">np</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">torch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">jax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_repro.html#fix_seeds"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.fix_seeds" title="Link to this definition"></a></dt>
+<dd><p>Deprecated: Use RandomStateManager instead.</p>
+<p>This function maintains backward compatibility with the old fix_seeds API.</p>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="scitex.logging.html" class="btn btn-neutral float-left" title="scitex.logging API Reference" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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diff --git a/src/scitex/_sphinx_html/api/scitex.scholar.html b/src/scitex/_sphinx_html/api/scitex.scholar.html
new file mode 100644
index 000000000..539a76528
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.scholar.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+          
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+          <a href="../index.html" class="icon icon-home">
+            SciTeX
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/api/scitex.scholar.rst" class="fa fa-github"> Edit on GitHub</a>
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+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.scholar">
+<span id="scitex-scholar-api-reference"></span><h1>scitex.scholar API Reference<a class="headerlink" href="#module-scitex.scholar" title="Link to this heading"></a></h1>
+</section>
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="scitex.diagram.html" class="btn btn-neutral float-left" title="scitex.diagram API Reference" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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diff --git a/src/scitex/_sphinx_html/api/scitex.session.html b/src/scitex/_sphinx_html/api/scitex.session.html
new file mode 100644
index 000000000..9e233e5d4
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.session.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.session API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="scitex.io API Reference" href="scitex.io.html" />
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
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+        </div>
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+             
+  <section id="module-scitex.session">
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diff --git a/src/scitex/_sphinx_html/api/scitex.social.html b/src/scitex/_sphinx_html/api/scitex.social.html
new file mode 100644
index 000000000..1c95e71f3
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.social.html
@@ -0,0 +1,678 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.social API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="prev" title="scitex.path API Reference" href="scitex.path.html" /> 
+</head>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
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new file mode 100644
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+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
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+<span id="scitex-stats-api-reference"></span><h1>scitex.stats API Reference<a class="headerlink" href="#module-scitex.stats" title="Link to this heading"></a></h1>
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diff --git a/src/scitex/_sphinx_html/api/scitex.str.html b/src/scitex/_sphinx_html/api/scitex.str.html
new file mode 100644
index 000000000..9b2be888d
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+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+             
+  <section id="module-scitex.str">
+<span id="scitex-str-api-reference"></span><h1>scitex.str API Reference<a class="headerlink" href="#module-scitex.str" title="Link to this heading"></a></h1>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/api/scitex.template.html b/src/scitex/_sphinx_html/api/scitex.template.html
new file mode 100644
index 000000000..1df97908a
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.template.html
@@ -0,0 +1,680 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.template API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
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+      <script src="../_static/jquery.js?v=5d32c60e"></script>
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="scitex.decorators API Reference" href="scitex.decorators.html" />
+    <link rel="prev" title="scitex.nn API Reference" href="scitex.nn.html" /> 
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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diff --git a/src/scitex/_sphinx_html/api/scitex.writer.html b/src/scitex/_sphinx_html/api/scitex.writer.html
new file mode 100644
index 000000000..bbb19cda9
--- /dev/null
+++ b/src/scitex/_sphinx_html/api/scitex.writer.html
@@ -0,0 +1,1136 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>scitex.writer &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+    <link rel="next" title="scitex.linter" href="scitex.linter.html" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">API Reference</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
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+      <li class="breadcrumb-item active">scitex.writer</li>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.writer">
+<span id="scitex-writer"></span><h1>scitex.writer<a class="headerlink" href="#module-scitex.writer" title="Link to this heading"></a></h1>
+<p>SciTeX Writer - LaTeX manuscript compilation system with MCP server.</p>
+<dl class="simple">
+<dt>Three Interfaces:</dt><dd><ul class="simple">
+<li><p>Python API: import scitex_writer as sw</p></li>
+<li><p>CLI: scitex-writer &lt;command&gt;</p></li>
+<li><p>MCP: 30 tools for AI agents</p></li>
+</ul>
+</dd>
+<dt>Modules:</dt><dd><ul class="simple">
+<li><p>compile: Compile manuscripts to PDF</p></li>
+<li><p>export: Export manuscript for arXiv submission</p></li>
+<li><p>project: Clone, info, get_pdf</p></li>
+<li><p>tables: List, add, remove, csv_to_latex</p></li>
+<li><p>figures: List, add, remove, convert</p></li>
+<li><p>bib: List, add, remove, merge</p></li>
+<li><p>guidelines: IMRAD writing tips</p></li>
+<li><p>prompts: AI2 Asta integration</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.writer.usage">
+<span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">usage</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#scitex.writer.usage" title="Link to this definition"></a></dt>
+<dd><p>Get the usage guide with branding applied.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Formatted usage guide string.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.Writer">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">Writer</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">project_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_strategy</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'child'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">branch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/writer.html#Writer"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>LaTeX manuscript compiler.</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">project_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_strategy</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'child'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">branch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/writer.html#Writer.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize for project directory.</p>
+<p>If directory doesn’t exist, creates new project.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>project_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to project directory.</p></li>
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Project name (used if creating new project).</p></li>
+<li><p><strong>git_strategy</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Git initialization strategy:
+- ‘child’: Create isolated git in project directory (default)
+- ‘parent’: Use parent git repository
+- ‘origin’: Preserve template’s original git history
+- None or ‘none’: Disable git initialization</p></li>
+<li><p><strong>branch</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific branch of template repository to clone.
+If None, clones the default branch. Mutually exclusive with tag.</p></li>
+<li><p><strong>tag</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific tag/release of template repository to clone.
+If None, clones the default branch. Mutually exclusive with branch.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.compile_manuscript">
+<span class="sig-name descname"><span class="pre">compile_manuscript</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">progress_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/writer.html#Writer.compile_manuscript"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.compile_manuscript" title="Link to this definition"></a></dt>
+<dd><p>Compile manuscript to PDF with optional live callbacks.</p>
+<p>Runs scripts/shell/compile_manuscript.sh with configured settings.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum compilation time in seconds (default: 300).</p></li>
+<li><p><strong>log_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with each log line: log_callback(“Running pdflatex…”).</p></li>
+<li><p><strong>progress_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with progress: progress_callback(50, “Pass 2/3”).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>With success status, PDF path, and errors/warnings.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="../source/api/writer.html#scitex.writer.CompilationResult" title="scitex_writer._dataclasses.results._CompilationResult.CompilationResult"><code class="xref py py-class docutils literal notranslate"><span class="pre">CompilationResult</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">writer</span> <span class="o">=</span> <span class="n">Writer</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="s2">&quot;my_paper&quot;</span><span class="p">))</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_manuscript</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;PDF created: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.compile_supplementary">
+<span class="sig-name descname"><span class="pre">compile_supplementary</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">progress_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/writer.html#Writer.compile_supplementary"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.compile_supplementary" title="Link to this definition"></a></dt>
+<dd><p>Compile supplementary materials to PDF with optional live callbacks.</p>
+<p>Runs scripts/shell/compile_supplementary.sh with configured settings.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum compilation time in seconds (default: 300).</p></li>
+<li><p><strong>log_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with each log line.</p></li>
+<li><p><strong>progress_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with progress updates.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>With success status, PDF path, and errors/warnings.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="../source/api/writer.html#scitex.writer.CompilationResult" title="scitex_writer._dataclasses.results._CompilationResult.CompilationResult"><code class="xref py py-class docutils literal notranslate"><span class="pre">CompilationResult</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">writer</span> <span class="o">=</span> <span class="n">Writer</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="s2">&quot;my_paper&quot;</span><span class="p">))</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_supplementary</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;PDF created: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.compile_revision">
+<span class="sig-name descname"><span class="pre">compile_revision</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">track_changes</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">progress_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/writer.html#Writer.compile_revision"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.compile_revision" title="Link to this definition"></a></dt>
+<dd><p>Compile revision document with optional change tracking and live callbacks.</p>
+<p>Runs scripts/shell/compile_revision.sh with configured settings.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>track_changes</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Enable change tracking in compiled PDF (default: False).</p></li>
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum compilation time in seconds (default: 300).</p></li>
+<li><p><strong>log_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with each log line.</p></li>
+<li><p><strong>progress_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with progress updates.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>With success status, PDF path, and errors/warnings.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="../source/api/writer.html#scitex.writer.CompilationResult" title="scitex_writer._dataclasses.results._CompilationResult.CompilationResult"><code class="xref py py-class docutils literal notranslate"><span class="pre">CompilationResult</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">writer</span> <span class="o">=</span> <span class="n">Writer</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="s2">&quot;my_paper&quot;</span><span class="p">))</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_revision</span><span class="p">(</span><span class="n">track_changes</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Revision PDF: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.watch">
+<span class="sig-name descname"><span class="pre">watch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">on_compile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/writer.html#Writer.watch"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.watch" title="Link to this definition"></a></dt>
+<dd><p>Auto-recompile on file changes.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.get_pdf">
+<span class="sig-name descname"><span class="pre">get_pdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">doc_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'manuscript'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/writer.html#Writer.get_pdf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.get_pdf" title="Link to this definition"></a></dt>
+<dd><p>Get output PDF path (Read).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.delete">
+<span class="sig-name descname"><span class="pre">delete</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/writer.html#Writer.delete"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.delete" title="Link to this definition"></a></dt>
+<dd><p>Delete project directory (Delete).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">CompilationResult</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">success</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exit_code</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stdout</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stderr</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_pdf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">diff_pdf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">duration</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">errors</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">warnings</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/results/_CompilationResult.html#CompilationResult"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.CompilationResult" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Result of LaTeX compilation.</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.success">
+<span class="sig-name descname"><span class="pre">success</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><span class="pre">bool</span></a></span><a class="headerlink" href="#scitex.writer.CompilationResult.success" title="Link to this definition"></a></dt>
+<dd><p>Whether compilation succeeded (exit code 0)</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.exit_code">
+<span class="sig-name descname"><span class="pre">exit_code</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><span class="pre">int</span></a></span><a class="headerlink" href="#scitex.writer.CompilationResult.exit_code" title="Link to this definition"></a></dt>
+<dd><p>Process exit code</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.stdout">
+<span class="sig-name descname"><span class="pre">stdout</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><a class="headerlink" href="#scitex.writer.CompilationResult.stdout" title="Link to this definition"></a></dt>
+<dd><p>Standard output from compilation</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.stderr">
+<span class="sig-name descname"><span class="pre">stderr</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><a class="headerlink" href="#scitex.writer.CompilationResult.stderr" title="Link to this definition"></a></dt>
+<dd><p>Standard error from compilation</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.output_pdf">
+<span class="sig-name descname"><span class="pre">output_pdf</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.CompilationResult.output_pdf" title="Link to this definition"></a></dt>
+<dd><p>Path to generated PDF (if successful)</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.diff_pdf">
+<span class="sig-name descname"><span class="pre">diff_pdf</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.CompilationResult.diff_pdf" title="Link to this definition"></a></dt>
+<dd><p>Path to diff PDF with tracked changes (if generated)</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.log_file">
+<span class="sig-name descname"><span class="pre">log_file</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.CompilationResult.log_file" title="Link to this definition"></a></dt>
+<dd><p>Path to compilation log file</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.duration">
+<span class="sig-name descname"><span class="pre">duration</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><span class="pre">float</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">0.0</span></span><a class="headerlink" href="#scitex.writer.CompilationResult.duration" title="Link to this definition"></a></dt>
+<dd><p>Compilation duration in seconds</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.errors">
+<span class="sig-name descname"><span class="pre">errors</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#scitex.writer.CompilationResult.errors" title="Link to this definition"></a></dt>
+<dd><p>Parsed LaTeX errors (if any)</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.warnings">
+<span class="sig-name descname"><span class="pre">warnings</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#scitex.writer.CompilationResult.warnings" title="Link to this definition"></a></dt>
+<dd><p>Parsed LaTeX warnings (if any)</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.__str__">
+<span class="sig-name descname"><span class="pre">__str__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/results/_CompilationResult.html#CompilationResult.__str__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.CompilationResult.__str__" title="Link to this definition"></a></dt>
+<dd><p>Human-readable summary.</p>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">ManuscriptTree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contents</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">base</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">readme</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">archive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html#ManuscriptTree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.ManuscriptTree" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Manuscript directory structure (01_manuscript/).</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.root">
+<span class="sig-name descname"><span class="pre">root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.git_root">
+<span class="sig-name descname"><span class="pre">git_root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.git_root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.contents">
+<span class="sig-name descname"><span class="pre">contents</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">ManuscriptContents</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.contents" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.base">
+<span class="sig-name descname"><span class="pre">base</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.base" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.readme">
+<span class="sig-name descname"><span class="pre">readme</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.readme" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.archive">
+<span class="sig-name descname"><span class="pre">archive</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.archive" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.__post_init__">
+<span class="sig-name descname"><span class="pre">__post_init__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html#ManuscriptTree.__post_init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.ManuscriptTree.__post_init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize all instances.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.verify_structure">
+<span class="sig-name descname"><span class="pre">verify_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html#ManuscriptTree.verify_structure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.ManuscriptTree.verify_structure" title="Link to this definition"></a></dt>
+<dd><p>Verify manuscript structure has required components.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span></p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(is_valid, list_of_missing_items_with_paths)</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">SupplementaryTree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contents</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">base</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">supplementary</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">supplementary_diff</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">readme</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">archive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html#SupplementaryTree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.SupplementaryTree" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Supplementary directory structure (02_supplementary/).</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.root">
+<span class="sig-name descname"><span class="pre">root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.git_root">
+<span class="sig-name descname"><span class="pre">git_root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.git_root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.contents">
+<span class="sig-name descname"><span class="pre">contents</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">SupplementaryContents</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.contents" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.base">
+<span class="sig-name descname"><span class="pre">base</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.base" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.supplementary">
+<span class="sig-name descname"><span class="pre">supplementary</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.supplementary" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.supplementary_diff">
+<span class="sig-name descname"><span class="pre">supplementary_diff</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.supplementary_diff" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.readme">
+<span class="sig-name descname"><span class="pre">readme</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.readme" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.archive">
+<span class="sig-name descname"><span class="pre">archive</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.archive" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.__post_init__">
+<span class="sig-name descname"><span class="pre">__post_init__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html#SupplementaryTree.__post_init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.SupplementaryTree.__post_init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize all instances.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.verify_structure">
+<span class="sig-name descname"><span class="pre">verify_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html#SupplementaryTree.verify_structure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.SupplementaryTree.verify_structure" title="Link to this definition"></a></dt>
+<dd><p>Verify supplementary structure has required components.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span></p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(is_valid, list_of_missing_items_with_paths)</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">RevisionTree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contents</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">base</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">revision</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">readme</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">archive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">docs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html#RevisionTree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.RevisionTree" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Revision directory structure (03_revision/).</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.root">
+<span class="sig-name descname"><span class="pre">root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.writer.RevisionTree.root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.git_root">
+<span class="sig-name descname"><span class="pre">git_root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.git_root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.contents">
+<span class="sig-name descname"><span class="pre">contents</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">RevisionContents</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.contents" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.base">
+<span class="sig-name descname"><span class="pre">base</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.base" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.revision">
+<span class="sig-name descname"><span class="pre">revision</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.revision" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.readme">
+<span class="sig-name descname"><span class="pre">readme</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.readme" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.archive">
+<span class="sig-name descname"><span class="pre">archive</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.archive" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.docs">
+<span class="sig-name descname"><span class="pre">docs</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.docs" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.__post_init__">
+<span class="sig-name descname"><span class="pre">__post_init__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html#RevisionTree.__post_init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.RevisionTree.__post_init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize all instances.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.verify_structure">
+<span class="sig-name descname"><span class="pre">verify_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html#RevisionTree.verify_structure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.RevisionTree.verify_structure" title="Link to this definition"></a></dt>
+<dd><p>Verify revision structure has required components.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span></p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(is_valid, list_of_missing_items_with_paths)</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="scitex.scholar.html" class="btn btn-neutral float-left" title="scitex.scholar API Reference" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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diff --git a/src/scitex/_sphinx_html/core_concepts.html b/src/scitex/_sphinx_html/core_concepts.html
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@@ -0,0 +1,856 @@
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+  <title>Core Concepts &mdash; SciTeX v0.0.0</title>
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+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#data-sources">Data Sources</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#project-organization">Project Organization</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Core Concepts</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/core_concepts.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="core-concepts">
+<h1>Core Concepts<a class="headerlink" href="#core-concepts" title="Link to this heading"></a></h1>
+<section id="research-workflow">
+<h2>Research Workflow<a class="headerlink" href="#research-workflow" title="Link to this heading"></a></h2>
+<p>SciTeX covers the full research pipeline, from literature review to publication:</p>
+<a class="reference internal image-reference" href="_images/workflow.png"><img alt="Research workflow: Question → Literature → Data → Analysis → Figures → Manuscript → Verify → Publication" src="_images/workflow.png" style="width: 100%;" />
+</a>
+<p>Each stage maps to a SciTeX module. The <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> decorator ties them
+together, ensuring every step is reproducible and provenance-tracked.</p>
+</section>
+<section id="architecture">
+<h2>Architecture<a class="headerlink" href="#architecture" title="Link to this heading"></a></h2>
+<p>SciTeX is organized around a simple principle: every research script should be
+a reproducible, self-documenting unit of work. The <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> decorator
+enforces this by managing outputs, logging, and configuration automatically.</p>
+<a class="reference internal image-reference" href="_static/architecture.png"><img alt="Module architecture: Experiment (session, config, io, logging, repro), Analysis &amp; Visualization (stats, dsp, plt, diagram), Publication (scholar, writer, clew)" src="_static/architecture.png" style="width: 100%;" />
+</a>
+<p>Modules are grouped into three layers – <strong>Experiment</strong> infrastructure (blue),
+<strong>Analysis &amp; Visualization</strong> tools (orange), and <strong>Publication</strong> (purple).
+See <a class="reference internal" href="modules/index.html"><span class="doc">Module Overview</span></a> for the full module reference.</p>
+</section>
+<section id="the-session-model">
+<h2>The Session Model<a class="headerlink" href="#the-session-model" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> is the core abstraction. It wraps a function and provides:</p>
+<ol class="arabic simple">
+<li><p><strong>Output directory</strong>: <code class="docutils literal notranslate"><span class="pre">script_out/FINISHED_SUCCESS/&lt;session_id&gt;/</span></code></p></li>
+<li><p><strong>Logging</strong>: All stdout/stderr captured to <code class="docutils literal notranslate"><span class="pre">script.log</span></code></p></li>
+<li><p><strong>Config injection</strong>: YAML files from <code class="docutils literal notranslate"><span class="pre">./config/</span></code> merged and injected</p></li>
+<li><p><strong>CLI generation</strong>: Function parameters become <code class="docutils literal notranslate"><span class="pre">--flags</span></code></p></li>
+<li><p><strong>Provenance</strong>: File hashes recorded to SQLite for reproducibility</p></li>
+</ol>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span>
+    <span class="n">lr</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span>               <span class="c1"># --lr 0.01</span>
+    <span class="n">epochs</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span>             <span class="c1"># --epochs 50</span>
+    <span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>    <span class="c1"># from ./config/*.yaml</span>
+    <span class="n">plt</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>       <span class="c1"># pre-configured matplotlib</span>
+    <span class="n">logger</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>    <span class="c1"># session logger</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Train a model. Docstring becomes --help text.&quot;&quot;&quot;</span>
+    <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Training with lr=</span><span class="si">{</span><span class="n">lr</span><span class="si">}</span><span class="s2">, epochs=</span><span class="si">{</span><span class="n">epochs</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="c1"># stx.io.save paths are relative to session output dir</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">({</span><span class="s2">&quot;lr&quot;</span><span class="p">:</span> <span class="n">lr</span><span class="p">,</span> <span class="s2">&quot;epochs&quot;</span><span class="p">:</span> <span class="n">epochs</span><span class="p">},</span> <span class="s2">&quot;params.yaml&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="mi">0</span>
+</pre></div>
+</div>
+<p>Session output tree:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>train_out/
+├── RUNNING/                    # while script runs
+│   └── 20260213_143022_AB12/
+│       ├── params.yaml
+│       └── train.log
+└── FINISHED_SUCCESS/           # after successful exit
+    └── 20260213_143022_AB12/   # moved here on completion
+        ├── params.yaml
+        └── train.log
+</pre></div>
+</div>
+</section>
+<section id="universal-i-o">
+<h2>Universal I/O<a class="headerlink" href="#universal-i-o" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code> and <code class="docutils literal notranslate"><span class="pre">stx.io.load</span></code> dispatch on file extension:</p>
+<table class="docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Extension</p></th>
+<th class="head"><p>Data Type</p></th>
+<th class="head"><p>Backend</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.csv</span></code></p></td>
+<td><p>DataFrame</p></td>
+<td><p>pandas</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.npy</span></code>, <code class="docutils literal notranslate"><span class="pre">.npz</span></code></p></td>
+<td><p>ndarray</p></td>
+<td><p>numpy</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.pkl</span></code>, <code class="docutils literal notranslate"><span class="pre">.pickle</span></code></p></td>
+<td><p>any object</p></td>
+<td><p>pickle</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.yaml</span></code>, <code class="docutils literal notranslate"><span class="pre">.yml</span></code></p></td>
+<td><p>dict</p></td>
+<td><p>PyYAML</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.json</span></code></p></td>
+<td><p>dict/list</p></td>
+<td><p>json</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.png</span></code>, <code class="docutils literal notranslate"><span class="pre">.jpg</span></code>, <code class="docutils literal notranslate"><span class="pre">.svg</span></code>, <code class="docutils literal notranslate"><span class="pre">.pdf</span></code></p></td>
+<td><p>Figure</p></td>
+<td><p>matplotlib</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.hdf5</span></code>, <code class="docutils literal notranslate"><span class="pre">.h5</span></code></p></td>
+<td><p>dict/array</p></td>
+<td><p>h5py</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.mat</span></code></p></td>
+<td><p>dict</p></td>
+<td><p>scipy.io</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.pth</span></code>, <code class="docutils literal notranslate"><span class="pre">.pt</span></code></p></td>
+<td><p>state_dict</p></td>
+<td><p>torch</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.parquet</span></code></p></td>
+<td><p>DataFrame</p></td>
+<td><p>pyarrow</p></td>
+</tr>
+</tbody>
+</table>
+<p>When saving a matplotlib Figure, SciTeX also exports:</p>
+<ul class="simple">
+<li><p>A <code class="docutils literal notranslate"><span class="pre">.csv</span></code> with the plotted data (extracted from axes)</p></li>
+<li><p>A <code class="docutils literal notranslate"><span class="pre">.yaml</span></code> recipe for reproducing the figure</p></li>
+</ul>
+</section>
+<section id="provenance-tracking-clew">
+<h2>Provenance Tracking (Clew)<a class="headerlink" href="#provenance-tracking-clew" title="Link to this heading"></a></h2>
+<p>Inside <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>, every <code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code> and <code class="docutils literal notranslate"><span class="pre">stx.io.load</span></code> call
+records the file’s SHA-256 hash to a local SQLite database. This enables:</p>
+<ul class="simple">
+<li><p><strong>Verification</strong>: Check if output files have been modified since creation</p></li>
+<li><p><strong>DAG reconstruction</strong>: Trace which inputs produced which outputs</p></li>
+<li><p><strong>Cross-session linking</strong>: If script B loads a file that script A produced,
+the parent-child relationship is recorded automatically</p></li>
+</ul>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Check verification status</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>status
+
+<span class="c1"># Verify a specific session</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>run<span class="w"> </span>&lt;session_id&gt;
+
+<span class="c1"># Generate a dependency diagram</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>mermaid
+</pre></div>
+</div>
+</section>
+<section id="configuration">
+<h2>Configuration<a class="headerlink" href="#configuration" title="Link to this heading"></a></h2>
+<p>SciTeX uses a priority-based config system:</p>
+<ol class="arabic simple">
+<li><p><strong>CLI flags</strong> (highest priority): <code class="docutils literal notranslate"><span class="pre">--lr</span> <span class="pre">0.01</span></code></p></li>
+<li><p><strong>Config files</strong>: <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code> (merged alphabetically)</p></li>
+<li><p><strong>Function defaults</strong> (lowest priority): <code class="docutils literal notranslate"><span class="pre">lr=0.001</span></code></p></li>
+</ol>
+<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="c1"># config/experiment.yaml</span>
+<span class="nt">DATA_DIR</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">./data</span>
+<span class="nt">MODEL</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">hidden_size</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">256</span>
+<span class="w">  </span><span class="nt">dropout</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">0.1</span>
+
+<span class="c1"># config/PATH.yaml</span>
+<span class="nt">OUTPUT_DIR</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">${HOME}/results</span><span class="w">    </span><span class="c1"># env var substitution</span>
+</pre></div>
+</div>
+<p>Access in code:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span> <span class="o">**</span><span class="n">kw</span><span class="p">):</span>
+    <span class="n">data_dir</span> <span class="o">=</span> <span class="n">CONFIG</span><span class="p">[</span><span class="s2">&quot;DATA_DIR&quot;</span><span class="p">]</span>
+    <span class="n">hidden</span> <span class="o">=</span> <span class="n">CONFIG</span><span class="p">[</span><span class="s2">&quot;MODEL&quot;</span><span class="p">][</span><span class="s2">&quot;hidden_size&quot;</span><span class="p">]</span>
+</pre></div>
+</div>
+</section>
+<section id="best-practices">
+<h2>Best Practices<a class="headerlink" href="#best-practices" title="Link to this heading"></a></h2>
+<ol class="arabic simple">
+<li><p><strong>One session per script</strong>: Each <code class="docutils literal notranslate"><span class="pre">.py</span></code> file should have one <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> function</p></li>
+<li><p><strong>Use relative paths in save/load</strong>: They resolve relative to the session output directory</p></li>
+<li><p><strong>Return 0 for success</strong>: The exit code determines the output directory name (<code class="docutils literal notranslate"><span class="pre">FINISHED_SUCCESS</span></code> vs <code class="docutils literal notranslate"><span class="pre">FINISHED_ERROR</span></code>)</p></li>
+<li><p><strong>Put config in</strong> <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code>: Keeps parameters separate from code</p></li>
+<li><p><strong>Use</strong> <code class="docutils literal notranslate"><span class="pre">stx.repro.fix_seeds(42)</span></code> <strong>for determinism</strong>: Fixes numpy, torch, random seeds in one call</p></li>
+</ol>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="quickstart.html" class="btn btn-neutral float-left" title="Quick Start" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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diff --git a/src/scitex/_sphinx_html/gallery.html b/src/scitex/_sphinx_html/gallery.html
new file mode 100644
index 000000000..fd2bc8431
--- /dev/null
+++ b/src/scitex/_sphinx_html/gallery.html
@@ -0,0 +1,1023 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="./">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Plot Gallery &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=b86133f3" />
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="genindex.html" />
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+    <link rel="next" title="API Reference" href="api/index.html" />
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+</head>
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+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Plot Gallery</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/gallery.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="plot-gallery">
+<h1>Plot Gallery<a class="headerlink" href="#plot-gallery" title="Link to this heading"></a></h1>
+<p><code class="docutils literal notranslate"><span class="pre">stx.plt</span></code> wraps matplotlib axes with data-tracking methods.
+All <code class="docutils literal notranslate"><span class="pre">plot_*</span></code> methods record data for automatic CSV export.</p>
+<p>Generate the full gallery locally:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">gallery</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">output_dir</span><span class="o">=</span><span class="s2">&quot;./gallery&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<section id="line-plots">
+<h2>Line Plots<a class="headerlink" href="#line-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id1">
+<a class="reference internal image-reference" href="_images/stx_line.png"><img alt="_images/stx_line.png" src="_images/stx_line.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_line(x,</span> <span class="pre">y)</span></code></span><a class="headerlink" href="#id1" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id2">
+<a class="reference internal image-reference" href="_images/stx_shaded_line.png"><img alt="_images/stx_shaded_line.png" src="_images/stx_shaded_line.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_shaded_line(x,</span> <span class="pre">y_mean,</span> <span class="pre">y_std)</span></code></span><a class="headerlink" href="#id2" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id3">
+<a class="reference internal image-reference" href="_images/plot.png"><img alt="_images/plot.png" src="_images/plot.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot(x,</span> <span class="pre">y)</span></code> (standard matplotlib)</span><a class="headerlink" href="#id3" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id4">
+<a class="reference internal image-reference" href="_images/step.png"><img alt="_images/step.png" src="_images/step.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.step(x,</span> <span class="pre">y)</span></code></span><a class="headerlink" href="#id4" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="statistical-plots">
+<h2>Statistical Plots<a class="headerlink" href="#statistical-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id5">
+<a class="reference internal image-reference" href="_images/stx_mean_std.png"><img alt="_images/stx_mean_std.png" src="_images/stx_mean_std.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_mean_std(groups)</span></code></span><a class="headerlink" href="#id5" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id6">
+<a class="reference internal image-reference" href="_images/stx_mean_ci.png"><img alt="_images/stx_mean_ci.png" src="_images/stx_mean_ci.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_mean_ci(groups)</span></code></span><a class="headerlink" href="#id6" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id7">
+<a class="reference internal image-reference" href="_images/stx_median_iqr.png"><img alt="_images/stx_median_iqr.png" src="_images/stx_median_iqr.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_median_iqr(groups)</span></code></span><a class="headerlink" href="#id7" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id8">
+<a class="reference internal image-reference" href="_images/stx_errorbar.png"><img alt="_images/stx_errorbar.png" src="_images/stx_errorbar.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_errorbar(x,</span> <span class="pre">y,</span> <span class="pre">yerr)</span></code></span><a class="headerlink" href="#id8" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="distribution-plots">
+<h2>Distribution Plots<a class="headerlink" href="#distribution-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id9">
+<a class="reference internal image-reference" href="_images/stx_kde.png"><img alt="_images/stx_kde.png" src="_images/stx_kde.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_kde(data)</span></code></span><a class="headerlink" href="#id9" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id10">
+<a class="reference internal image-reference" href="_images/stx_ecdf.png"><img alt="_images/stx_ecdf.png" src="_images/stx_ecdf.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_ecdf(data)</span></code></span><a class="headerlink" href="#id10" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id11">
+<a class="reference internal image-reference" href="_images/stx_joyplot.png"><img alt="_images/stx_joyplot.png" src="_images/stx_joyplot.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_joyplot(groups)</span></code></span><a class="headerlink" href="#id11" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id12">
+<a class="reference internal image-reference" href="_images/hist.png"><img alt="_images/hist.png" src="_images/hist.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.hist(data)</span></code></span><a class="headerlink" href="#id12" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="categorical-plots">
+<h2>Categorical Plots<a class="headerlink" href="#categorical-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id13">
+<a class="reference internal image-reference" href="_images/stx_violin.png"><img alt="_images/stx_violin.png" src="_images/stx_violin.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_violin(groups)</span></code></span><a class="headerlink" href="#id13" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id14">
+<a class="reference internal image-reference" href="_images/stx_box.png"><img alt="_images/stx_box.png" src="_images/stx_box.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_box(groups)</span></code></span><a class="headerlink" href="#id14" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id15">
+<a class="reference internal image-reference" href="_images/stx_bar.png"><img alt="_images/stx_bar.png" src="_images/stx_bar.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_bar(labels,</span> <span class="pre">values)</span></code></span><a class="headerlink" href="#id15" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id16">
+<a class="reference internal image-reference" href="_images/stx_barh.png"><img alt="_images/stx_barh.png" src="_images/stx_barh.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_barh(labels,</span> <span class="pre">values)</span></code></span><a class="headerlink" href="#id16" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="scatter-plots">
+<h2>Scatter Plots<a class="headerlink" href="#scatter-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id17">
+<a class="reference internal image-reference" href="_images/stx_scatter.png"><img alt="_images/stx_scatter.png" src="_images/stx_scatter.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_scatter(x,</span> <span class="pre">y)</span></code></span><a class="headerlink" href="#id17" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id18">
+<a class="reference internal image-reference" href="_images/scatter.png"><img alt="_images/scatter.png" src="_images/scatter.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.scatter(x,</span> <span class="pre">y)</span></code> (standard matplotlib)</span><a class="headerlink" href="#id18" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="heatmaps-and-grids">
+<h2>Heatmaps and Grids<a class="headerlink" href="#heatmaps-and-grids" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id19">
+<a class="reference internal image-reference" href="_images/stx_heatmap.png"><img alt="_images/stx_heatmap.png" src="_images/stx_heatmap.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_heatmap(matrix)</span></code></span><a class="headerlink" href="#id19" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id20">
+<a class="reference internal image-reference" href="_images/stx_conf_mat.png"><img alt="_images/stx_conf_mat.png" src="_images/stx_conf_mat.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_conf_mat(cm)</span></code></span><a class="headerlink" href="#id20" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id21">
+<a class="reference internal image-reference" href="_images/stx_image.png"><img alt="_images/stx_image.png" src="_images/stx_image.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_image(img)</span></code></span><a class="headerlink" href="#id21" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id22">
+<a class="reference internal image-reference" href="_images/stx_imshow.png"><img alt="_images/stx_imshow.png" src="_images/stx_imshow.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_imshow(data)</span></code></span><a class="headerlink" href="#id22" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="area-plots">
+<h2>Area Plots<a class="headerlink" href="#area-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id23">
+<a class="reference internal image-reference" href="_images/stx_fill_between.png"><img alt="_images/stx_fill_between.png" src="_images/stx_fill_between.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_fill_between(x,</span> <span class="pre">y1,</span> <span class="pre">y2)</span></code></span><a class="headerlink" href="#id23" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id24">
+<a class="reference internal image-reference" href="_images/stx_fillv.png"><img alt="_images/stx_fillv.png" src="_images/stx_fillv.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_fillv(x_start,</span> <span class="pre">x_end)</span></code></span><a class="headerlink" href="#id24" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="special-plots">
+<h2>Special Plots<a class="headerlink" href="#special-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id25">
+<a class="reference internal image-reference" href="_images/stx_raster.png"><img alt="_images/stx_raster.png" src="_images/stx_raster.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_raster(spike_times)</span></code></span><a class="headerlink" href="#id25" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id26">
+<a class="reference internal image-reference" href="_images/stx_rectangle.png"><img alt="_images/stx_rectangle.png" src="_images/stx_rectangle.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_rectangle(xy,</span> <span class="pre">w,</span> <span class="pre">h)</span></code></span><a class="headerlink" href="#id26" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="contour-and-vector-plots">
+<h2>Contour and Vector Plots<a class="headerlink" href="#contour-and-vector-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id27">
+<a class="reference internal image-reference" href="_images/stx_contour.png"><img alt="_images/stx_contour.png" src="_images/stx_contour.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_contour(x,</span> <span class="pre">y,</span> <span class="pre">z)</span></code></span><a class="headerlink" href="#id27" title="Link to this image"></a></p>
+</figcaption>
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+<a class="reference internal image-reference" href="_images/quiver.png"><img alt="_images/quiver.png" src="_images/quiver.png" style="width: 100%;" />
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+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.quiver(x,</span> <span class="pre">y,</span> <span class="pre">u,</span> <span class="pre">v)</span></code></span><a class="headerlink" href="#id28" title="Link to this image"></a></p>
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diff --git a/src/scitex/_sphinx_html/genindex.html b/src/scitex/_sphinx_html/genindex.html
new file mode 100644
index 000000000..d8eb9ecc4
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+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Index</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/genindex" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+
+<h1 id="index">Index</h1>
+
+<div class="genindex-jumpbox">
+ <a href="#_"><strong>_</strong></a>
+ | <a href="#A"><strong>A</strong></a>
+ | <a href="#B"><strong>B</strong></a>
+ | <a href="#C"><strong>C</strong></a>
+ | <a href="#D"><strong>D</strong></a>
+ | <a href="#E"><strong>E</strong></a>
+ | <a href="#F"><strong>F</strong></a>
+ | <a href="#G"><strong>G</strong></a>
+ | <a href="#H"><strong>H</strong></a>
+ | <a href="#I"><strong>I</strong></a>
+ | <a href="#J"><strong>J</strong></a>
+ | <a href="#L"><strong>L</strong></a>
+ | <a href="#M"><strong>M</strong></a>
+ | <a href="#N"><strong>N</strong></a>
+ | <a href="#O"><strong>O</strong></a>
+ | <a href="#P"><strong>P</strong></a>
+ | <a href="#Q"><strong>Q</strong></a>
+ | <a href="#R"><strong>R</strong></a>
+ | <a href="#S"><strong>S</strong></a>
+ | <a href="#T"><strong>T</strong></a>
+ | <a href="#U"><strong>U</strong></a>
+ | <a href="#V"><strong>V</strong></a>
+ | <a href="#W"><strong>W</strong></a>
+ | <a href="#Y"><strong>Y</strong></a>
+ 
+</div>
+<h2 id="_">_</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__">__call__() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.__call__">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.__call__">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.config.html#scitex.config.PriorityConfig.__init__">__init__() (scitex.config.PriorityConfig method)</a>, <a href="source/api/config.html#scitex.config.PriorityConfig.__init__">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.config.html#scitex.config.ScitexConfig.__init__">(scitex.config.ScitexConfig method)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig.__init__">[1]</a>
+</li>
+        <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.__init__">(scitex.config.ScitexPaths method)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.__init__">[1]</a>
+</li>
+        <li><a href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__">(scitex.logging.SciTeXError method)</a>, <a href="source/api/logging.html#scitex.logging.SciTeXError.__init__">[1]</a>
+</li>
+        <li><a href="source/api/msword.html#scitex.msword.WordReader.__init__">(scitex.msword.WordReader method)</a>
+</li>
+        <li><a href="source/api/msword.html#scitex.msword.WordWriter.__init__">(scitex.msword.WordWriter method)</a>
+</li>
+        <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__">(scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.__init__">[1]</a>
+</li>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.__init__">(scitex.rng.RandomStateManager method)</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.Writer.__init__">(scitex.writer.Writer method)</a>, <a href="source/api/writer.html#scitex.writer.Writer.__init__">[1]</a>
+</li>
+      </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/dev.html#scitex.dev.Result.__post_init__">__post_init__() (scitex.dev.Result method)</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__">(scitex.writer.ManuscriptTree method)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree.__post_init__">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__">(scitex.writer.RevisionTree method)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.__post_init__">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__">(scitex.writer.SupplementaryTree method)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.__post_init__">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__">__str__() (scitex.writer.CompilationResult method)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.__str__">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="A">A</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/msword.html#scitex.msword.accept_all_tracked_changes">accept_all_tracked_changes() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.add_claim">add_claim() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.add_claim">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.add_dry_run_argument">add_dry_run_argument() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.add_json_argument">add_json_argument() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.apply_comments_as_edits">apply_comments_as_edits() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive">archive (scitex.writer.ManuscriptTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree.archive">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.archive">(scitex.writer.RevisionTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.archive">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive">(scitex.writer.SupplementaryTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.archive">[1]</a>
+</li>
+      </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/cv.html#scitex.cv.arrow">arrow() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.async_wrap_as_mcp">async_wrap_as_mcp() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/audit.html#scitex.audit.audit">audit() (in module scitex.audit)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.AuthenticationError">AuthenticationError</a>, <a href="source/api/logging.html#scitex.logging.AuthenticationError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.AxisError">AxisError</a>, <a href="source/api/logging.html#scitex.logging.AxisError">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="B">B</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.base">base (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.base">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base">(scitex.writer.ManuscriptTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree.base">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.base">(scitex.writer.RevisionTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.base">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base">(scitex.writer.SupplementaryTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.base">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/msword.html#scitex.msword.BaseWordProfile">BaseWordProfile (class in scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError">BibTeXEnrichmentError</a>, <a href="source/api/logging.html#scitex.logging.BibTeXEnrichmentError">[1]</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.blur">blur() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.BaseWordProfile.body_font">body_font (scitex.msword.BaseWordProfile attribute)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/msword.html#scitex.msword.BaseWordProfile.body_font_size_pt">body_font_size_pt (scitex.msword.BaseWordProfile attribute)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.browser">browser (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.browser">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent">browser_persistent (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.browser_persistent">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots">browser_screenshots (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.browser_screenshots">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions">browser_sessions (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.browser_sessions">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.Tee.buffer">buffer (scitex.logging.Tee property)</a>, <a href="source/api/logging.html#scitex.logging.Tee.buffer">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.build_docs">build_docs() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.build_tree">build_tree() (in module scitex.app)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="C">C</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.cache">cache (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.cache">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#id3">caption_style (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.caption_style">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.capture">capture (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.capture">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.chain">chain() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.chain">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.check_file_exists">check_file_exists() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.check_file_exists">[1]</a>
+</li>
+      <li><a href="source/api/security.html#scitex.security.check_github_alerts">check_github_alerts() (in module scitex.security)</a>
+</li>
+      <li><a href="source/api/os.html#scitex.os.check_host">check_host() (in module scitex.os)</a>
+</li>
+      <li><a href="source/api/notebook.html#scitex.notebook.check_notebook">check_notebook() (in module scitex.notebook)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.check_path">check_path() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.check_path">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.check_shape_compatibility">check_shape_compatibility() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.check_shape_compatibility">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.check_stamp">check_stamp() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.check_stamp">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.check_versions">check_versions() (in module scitex.dev)</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint">checkpoint() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.checkpoint">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.checkpoint">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/cv.html#scitex.cv.circle">circle() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.classify_exception">classify_exception() (in module scitex.dev)</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.clean">clean() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.clean">[1]</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache">clear_cache() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.clear_cache">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.clear_cache">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/msword.html#scitex.msword.clear_highlights">clear_highlights() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log">clear_log() (scitex.config.PriorityConfig method)</a>, <a href="source/api/config.html#scitex.config.PriorityConfig.clear_log">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.Tee.close">close() (scitex.logging.Tee method)</a>, <a href="source/api/logging.html#scitex.logging.Tee.close">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#id10">columns (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.columns">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult">CompilationResult (class in scitex.writer)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript">compile_manuscript() (scitex.writer.Writer method)</a>, <a href="source/api/writer.html#scitex.writer.Writer.compile_manuscript">[1]</a>
+</li>
+      <li><a href="source/api/notebook.html#scitex.notebook.compile_notebook">compile_notebook() (in module scitex.notebook)</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.Writer.compile_revision">compile_revision() (scitex.writer.Writer method)</a>, <a href="source/api/writer.html#scitex.writer.Writer.compile_revision">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary">compile_supplementary() (scitex.writer.Writer method)</a>, <a href="source/api/writer.html#scitex.writer.Writer.compile_supplementary">[1]</a>
+</li>
+      <li><a href="source/api/notebook.html#scitex.notebook.CompiledNotebook">CompiledNotebook (class in scitex.notebook)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexConfig.config_path">config_path (scitex.config.ScitexConfig property)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig.config_path">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError">ConfigFileNotFoundError</a>, <a href="source/api/logging.html#scitex.logging.ConfigFileNotFoundError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.ConfigKeyError">ConfigKeyError</a>, <a href="source/api/logging.html#scitex.logging.ConfigKeyError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.ConfigurationError">ConfigurationError</a>, <a href="source/api/logging.html#scitex.logging.ConfigurationError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.configure">configure() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.configure">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents">contents (scitex.writer.ManuscriptTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree.contents">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.contents">(scitex.writer.RevisionTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.contents">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents">(scitex.writer.SupplementaryTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.contents">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.context">context (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.convert_docx_to_tex">convert_docx_to_tex() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/notebook.html#scitex.notebook.convert_notebook">convert_notebook() (in module scitex.notebook)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.FilesBackend.copy">copy() (scitex.app.FilesBackend method)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.copy_file">copy_file() (in module scitex.app)</a>
+</li>
+      <li><a href="source/api/etc.html#scitex.etc.count">count() (in module scitex.etc)</a>
+</li>
+      <li><a href="source/api/etc.html#scitex.etc.count_grids">count_grids() (in module scitex.etc)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.create_post_import_hook">create_post_import_hook() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.create_relative_symlink">create_relative_symlink() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.create_relative_symlink">[1]</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.crop">crop() (in module scitex.cv)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="D">D</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/notebook.html#id2">dag (scitex.notebook.CompiledNotebook attribute)</a>, <a href="source/api/notebook.html#scitex.notebook.CompiledNotebook.dag">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.dag">dag() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.dag">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.data">data (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.DataError">DataError</a>, <a href="source/api/logging.html#scitex.logging.DataError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.DataLossWarning">DataLossWarning</a>, <a href="source/api/logging.html#scitex.logging.DataLossWarning">[1]</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.FilesBackend.delete">delete() (scitex.app.FilesBackend method)</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.Writer.delete">(scitex.writer.Writer method)</a>, <a href="source/api/writer.html#scitex.writer.Writer.delete">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/app.html#scitex.app.delete_file">delete_file() (in module scitex.app)</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.denoise">denoise() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/compat.html#scitex.compat.deprecated">deprecated() (in module scitex.compat)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/msword.html#id1">description (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.description">[1]</a>
+</li>
+      <li><a href="source/api/context.html#scitex.context.detect_environment">detect_environment() (in module scitex.context)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.diff_docx">diff_docx() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf">diff_pdf (scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.diff_pdf">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.docs">docs (scitex.writer.RevisionTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.docs">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.DOIResolutionError">DOIResolutionError</a>, <a href="source/api/logging.html#scitex.logging.DOIResolutionError">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#id11">double_anonymous (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.double_anonymous">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.dry_run_option">dry_run_option() (in module scitex.dev)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.DTypeError">DTypeError</a>, <a href="source/api/logging.html#scitex.logging.DTypeError">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.duration">duration (scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.duration">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="E">E</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/cv.html#scitex.cv.edge_detect">edge_detect() (in module scitex.cv)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.enable_file_logging">enable_file_logging() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.enable_file_logging">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.enable_track_changes">enable_track_changes() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.EnrichmentError">EnrichmentError</a>, <a href="source/api/logging.html#scitex.logging.EnrichmentError">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all">ensure_all() (scitex.config.ScitexPaths method)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.ensure_all">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir">ensure_dir() (scitex.config.ScitexPaths method)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.ensure_dir">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#id9">equation_style (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.equation_style">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.error">error (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.error_code">error_code (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.ErrorCode">ErrorCode (class in scitex.dev)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.errors">errors (scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.errors">[1]</a>
+</li>
+      <li><a href="source/api/notebook.html#id1">execution_order (scitex.notebook.CompiledNotebook attribute)</a>, <a href="source/api/notebook.html#scitex.notebook.CompiledNotebook.execution_order">[1]</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.FilesBackend.exists">exists() (scitex.app.FilesBackend method)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.ErrorCode.exit_code">exit_code (scitex.dev.ErrorCode property)</a>
+
+      <ul>
+        <li><a href="source/api/dev.html#scitex.dev.Result.exit_code">(scitex.dev.Result property)</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code">(scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.exit_code">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.clew.html#scitex.clew.export_claims_json">export_claims_json() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.export_claims_json">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.extract_comments">extract_comments() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.extract_highlights">extract_highlights() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.extract_tracked_changes">extract_tracked_changes() (in module scitex.msword)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="F">F</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/msword.html#id6">figure_caption_prefixes (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.figure_caption_prefixes">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.FigureNotFoundError">FigureNotFoundError</a>, <a href="source/api/logging.html#scitex.logging.FigureNotFoundError">[1]</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.file_exists">file_exists() (in module scitex.app)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.FileFormatError">FileFormatError</a>, <a href="source/api/logging.html#scitex.logging.FileFormatError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.Tee.fileno">fileno() (scitex.logging.Tee method)</a>, <a href="source/api/logging.html#scitex.logging.Tee.fileno">[1]</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.FilesBackend">FilesBackend (class in scitex.app)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.filterwarnings">filterwarnings() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.filterwarnings">[1]</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.find_dir">find_dir() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.find_dir">[1]</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.find_file">find_file() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.find_file">[1]</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.find_git_root">find_git_root() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.find_git_root">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.path.html#scitex.path.find_latest">find_latest() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.find_latest">[1]</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.fix_broken_symlinks">fix_broken_symlinks() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.fix_broken_symlinks">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.fix_mismatches">fix_mismatches() (in module scitex.dev)</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.fix_seeds">fix_seeds() (in module scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.fix_seeds">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.fix_seeds">(in module scitex.rng)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexConfig.flat">flat (scitex.config.ScitexConfig property)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig.flat">[1]</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.flip">flip() (in module scitex.cv)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.Tee.flush">flush() (scitex.logging.Tee method)</a>, <a href="source/api/logging.html#scitex.logging.Tee.flush">[1]</a>
+</li>
+      <li><a href="source/api/security.html#scitex.security.format_alerts_report">format_alerts_report() (in module scitex.security)</a>
+</li>
+      <li><a href="source/api/cli.html#scitex.cli.format_python_signature">format_python_signature() (in module scitex.cli)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache">function_cache (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.function_cache">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="G">G</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.repro.html#scitex.repro.gen_ID">gen_ID() (in module scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.gen_ID">[1]</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.gen_id">gen_id() (in module scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.gen_id">[1]</a>
+</li>
+      <li><a href="source/api/rng.html#scitex.rng.gen_ID">gen_ID() (in module scitex.rng)</a>
+</li>
+      <li><a href="source/api/rng.html#scitex.rng.gen_id">gen_id() (in module scitex.rng)</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.gen_timestamp">gen_timestamp() (in module scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.gen_timestamp">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.gen_timestamp">(in module scitex.rng)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.repro.html#scitex.repro.get">get() (in module scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.get">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.get">(in module scitex.rng)</a>
+</li>
+        <li><a href="api/scitex.config.html#scitex.config.PriorityConfig.get">(scitex.config.PriorityConfig method)</a>, <a href="source/api/config.html#scitex.config.PriorityConfig.get">[1]</a>
+</li>
+        <li><a href="api/scitex.config.html#scitex.config.ScitexConfig.get">(scitex.config.ScitexConfig method)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig.get">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/notebook.html#scitex.notebook.get_code_cells">get_code_cells() (in module scitex.notebook)</a>
+</li>
+      <li><a href="source/api/ui.html#scitex.ui.get_component">get_component() (in module scitex.ui)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.get_config">get_config() (in module scitex.config)</a>, <a href="source/api/config.html#scitex.config.get_config">[1]</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.get_data_path_from_a_package">get_data_path_from_a_package() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.get_data_path_from_a_package">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.get_docs">get_docs() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/ui.html#scitex.ui.get_docs_path">get_docs_path() (in module scitex.ui)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.get_ecosystem_versions">get_ecosystem_versions() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.get_files">get_files() (in module scitex.app)</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator">get_generator() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.get_generator">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.get_generator">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/resource.html#scitex.resource.get_host_config">get_host_config() (in module scitex.resource)</a>
+</li>
+      <li><a href="source/api/resource.html#scitex.resource.get_host_name">get_host_name() (in module scitex.resource)</a>
+</li>
+      <li><a href="source/api/security.html#scitex.security.get_latest_alerts_file">get_latest_alerts_file() (in module scitex.security)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.get_level">get_level() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.get_level">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.get_log_path">get_log_path() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.get_log_path">[1]</a>
+</li>
+      <li><a href="source/api/resource.html#scitex.resource.get_machine_config">get_machine_config() (in module scitex.resource)</a>
+</li>
+      <li><a href="source/api/resource.html#scitex.resource.get_machine_name">get_machine_name() (in module scitex.resource)</a>
+</li>
+      <li><a href="source/api/resource.html#scitex.resource.get_metrics">get_metrics() (in module scitex.resource)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.get_mismatches">get_mismatches() (in module scitex.dev)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested">get_nested() (scitex.config.ScitexConfig method)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig.get_nested">[1]</a>
+</li>
+      <li><a href="source/api/context.html#scitex.context.get_notebook_directory">get_notebook_directory() (in module scitex.context)</a>
+</li>
+      <li><a href="source/api/context.html#scitex.context.get_notebook_info_simple">get_notebook_info_simple() (in module scitex.context)</a>
+</li>
+      <li><a href="source/api/context.html#scitex.context.get_notebook_name">get_notebook_name() (in module scitex.context)</a>
+
+      <ul>
+        <li><a href="source/api/notebook.html#scitex.notebook.get_notebook_name">(in module scitex.notebook)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/context.html#scitex.context.get_notebook_path">get_notebook_path() (in module scitex.context)</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator">get_np_generator() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.get_np_generator">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.get_np_generator">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/context.html#scitex.context.get_output_directory">get_output_directory() (in module scitex.context)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.get_paths">get_paths() (in module scitex.config)</a>, <a href="source/api/config.html#scitex.config.get_paths">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.Writer.get_pdf">get_pdf() (scitex.writer.Writer method)</a>, <a href="source/api/writer.html#scitex.writer.Writer.get_pdf">[1]</a>
+</li>
+      <li><a href="source/api/resource.html#scitex.resource.get_processor_usages">get_processor_usages() (in module scitex.resource)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.get_profile">get_profile() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.get_scitex_dir">get_scitex_dir() (in module scitex.config)</a>, <a href="source/api/config.html#scitex.config.get_scitex_dir">[1]</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state">get_sklearn_random_state() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.get_sklearn_random_state">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.path.html#scitex.path.get_spath">get_spath() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.get_spath">[1]</a>
+</li>
+      <li><a href="source/api/resource.html#scitex.resource.get_specs">get_specs() (in module scitex.resource)</a>
+</li>
+      <li><a href="source/api/ui.html#scitex.ui.get_static_dir">get_static_dir() (in module scitex.ui)</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.get_this_path">get_this_path() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.get_this_path">[1]</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator">get_torch_generator() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.get_torch_generator">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.get_torch_generator">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.logging.html#scitex.logging.getLogger">getLogger() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.getLogger">[1]</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.getsize">getsize() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.getsize">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root">git_root (scitex.writer.ManuscriptTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree.git_root">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root">(scitex.writer.RevisionTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.git_root">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root">(scitex.writer.SupplementaryTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.git_root">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/security.html#scitex.security.GitHubSecurityError">GitHubSecurityError</a>
+</li>
+      <li><a href="source/api/cli.html#scitex.cli.group_to_json">group_to_json() (in module scitex.cli)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="H">H</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/dev.html#scitex.dev.handle_result">handle_result() (in module scitex.dev)</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.hash_array">hash_array() (in module scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.hash_array">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.hash_array">(in module scitex.rng)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.clew.html#scitex.clew.hash_directory">hash_directory() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.hash_directory">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.hash_file">hash_file() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.hash_file">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.BaseWordProfile.heading_background_hex">heading_background_hex (scitex.msword.BaseWordProfile attribute)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/msword.html#id2">heading_styles (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.heading_styles">[1]</a>
+</li>
+      <li><a href="source/api/cli.html#scitex.cli.help_recursive_to_json">help_recursive_to_json() (in module scitex.cli)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.hide_spines">hide_spines() (ax method)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.hints_on_error">hints_on_error (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.hints_on_success">hints_on_success (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.hints_on_warning">hints_on_warning (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.hist">hist() (ax method)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="I">I</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/dev.html#scitex.dev.Result.idempotent">idempotent (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache">impact_factor_cache (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.impact_factor_cache">[1]</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.increment_version">increment_version() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.increment_version">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.init_examples">init_examples() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.init_examples">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.InstallHint">InstallHint (class in scitex.dev)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.InvalidPathError">InvalidPathError</a>, <a href="source/api/logging.html#scitex.logging.InvalidPathError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.IOError">IOError</a>, <a href="source/api/logging.html#scitex.logging.IOError">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled">is_file_logging_enabled() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.is_file_logging_enabled">[1]</a>
+</li>
+      <li><a href="source/api/os.html#scitex.os.is_host">is_host() (in module scitex.os)</a>
+</li>
+      <li><a href="source/api/context.html#scitex.context.is_ipython">is_ipython() (in module scitex.context)</a>
+</li>
+      <li><a href="source/api/context.html#scitex.context.is_notebook">is_notebook() (in module scitex.context)</a>
+</li>
+      <li><a href="source/api/context.html#scitex.context.is_script">is_script() (in module scitex.context)</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.is_symlink">is_symlink() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.is_symlink">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.is_track_changes_enabled">is_track_changes_enabled() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.Tee.isatty">isatty() (scitex.logging.Tee method)</a>, <a href="source/api/logging.html#scitex.logging.Tee.isatty">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="J">J</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/dev.html#scitex.dev.json_option">json_option() (in module scitex.dev)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/dev.html#scitex.dev.Result.json_schema">json_schema() (scitex.dev.Result class method)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="L">L</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/dev.html#scitex.dev.last_install_hint">last_install_hint() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.line">line() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.BaseWordProfile.line_spacing">line_spacing (scitex.msword.BaseWordProfile attribute)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.link_captions_to_images">link_captions_to_images() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.link_captions_to_images_by_proximity">link_captions_to_images_by_proximity() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.FilesBackend.list">list() (scitex.app.FilesBackend method)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.list_all">list_all() (scitex.config.ScitexPaths method)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.list_all">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.list_claims">list_claims() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.list_claims">[1]</a>
+</li>
+      <li><a href="source/api/ui.html#scitex.ui.list_components">list_components() (in module scitex.ui)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.list_files">list_files() (in module scitex.app)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.list_profiles">list_profiles() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.list_runs">list_runs() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.list_runs">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.list_stamps">list_stamps() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.list_stamps">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#id8">list_styles (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.list_styles">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.path.html#scitex.path.list_symlinks">list_symlinks() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.list_symlinks">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.list_versions">list_versions() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.load">load() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/resource.html#scitex.resource.load_config">load_config() (in module scitex.resource)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.load_docx">load_docx() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.load_dotenv">load_dotenv() (in module scitex.config)</a>, <a href="source/api/config.html#scitex.config.load_dotenv">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.load_env_from_path">load_env_from_path() (in module scitex.config)</a>, <a href="source/api/config.html#scitex.config.load_env_from_path">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.load_scitex_env">load_scitex_env() (in module scitex.config)</a>, <a href="source/api/config.html#scitex.config.load_scitex_env">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.load_yaml">load_yaml() (in module scitex.config)</a>, <a href="source/api/config.html#scitex.config.load_yaml">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.LoadError">LoadError</a>, <a href="source/api/logging.html#scitex.logging.LoadError">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file">log_file (scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.log_file">[1]</a>
+</li>
+      <li><a href="source/api/resource.html#scitex.resource.log_processor_usages">log_processor_usages() (in module scitex.resource)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.log_to_file">log_to_file() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.log_to_file">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.logs">logs (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.logs">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="M">M</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/resource.html#scitex.resource.main">main() (in module scitex.resource)</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree">ManuscriptTree (class in scitex.writer)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.mark_additions">mark_additions() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.mark_modifications">mark_modifications() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.mermaid">mermaid() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.mermaid">[1]</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.mk_spath">mk_spath() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.mk_spath">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.ModelError">ModelError</a>, <a href="source/api/logging.html#scitex.logging.ModelError">[1]</a>
+</li>
+      <li>
+    module
+
+      <ul>
+        <li><a href="api/scitex.ai.html#module-scitex.ai">scitex.ai</a>, <a href="source/api/ai.html#module-scitex.ai">[1]</a>
+</li>
+        <li><a href="source/api/app.html#module-scitex.app">scitex.app</a>
+</li>
+        <li><a href="source/api/audio.html#module-scitex.audio">scitex.audio</a>
+</li>
+        <li><a href="source/api/audit.html#module-scitex.audit">scitex.audit</a>
+</li>
+        <li><a href="source/api/benchmark.html#module-scitex.benchmark">scitex.benchmark</a>
+</li>
+        <li><a href="source/api/bridge.html#module-scitex.bridge">scitex.bridge</a>
+</li>
+        <li><a href="source/api/browser.html#module-scitex.browser">scitex.browser</a>
+</li>
+        <li><a href="source/api/canvas.html#module-scitex.canvas">scitex.canvas</a>
+</li>
+        <li><a href="source/api/capture.html#module-scitex.capture">scitex.capture</a>
+</li>
+        <li><a href="api/scitex.clew.html#module-scitex.clew">scitex.clew</a>, <a href="source/api/clew.html#module-scitex.clew">[1]</a>
+</li>
+        <li><a href="source/api/cli.html#module-scitex.cli">scitex.cli</a>
+</li>
+        <li><a href="source/api/cloud.html#module-scitex.cloud">scitex.cloud</a>
+</li>
+        <li><a href="source/api/compat.html#module-scitex.compat">scitex.compat</a>
+</li>
+        <li><a href="api/scitex.config.html#module-scitex.config">scitex.config</a>, <a href="source/api/config.html#module-scitex.config">[1]</a>
+</li>
+        <li><a href="source/api/container.html#module-scitex.container">scitex.container</a>
+</li>
+        <li><a href="source/api/context.html#module-scitex.context">scitex.context</a>
+</li>
+        <li><a href="source/api/cv.html#module-scitex.cv">scitex.cv</a>
+</li>
+        <li><a href="source/api/dataset.html#module-scitex.dataset">scitex.dataset</a>
+</li>
+        <li><a href="source/api/datetime.html#module-scitex.datetime">scitex.datetime</a>
+</li>
+        <li><a href="api/scitex.db.html#module-scitex.db">scitex.db</a>, <a href="source/api/db.html#module-scitex.db">[1]</a>
+</li>
+        <li><a href="api/scitex.decorators.html#module-scitex.decorators">scitex.decorators</a>, <a href="source/api/decorators.html#module-scitex.decorators">[1]</a>
+</li>
+        <li><a href="source/api/dev.html#module-scitex.dev">scitex.dev</a>
+</li>
+        <li><a href="api/scitex.diagram.html#module-scitex.diagram">scitex.diagram</a>, <a href="source/api/diagram.html#module-scitex.diagram">[1]</a>
+</li>
+        <li><a href="api/scitex.dict.html#module-scitex.dict">scitex.dict</a>, <a href="source/api/dict.html#module-scitex.dict">[1]</a>
+</li>
+        <li><a href="api/scitex.dsp.html#module-scitex.dsp">scitex.dsp</a>, <a href="source/api/dsp.html#module-scitex.dsp">[1]</a>
+</li>
+        <li><a href="source/api/etc.html#module-scitex.etc">scitex.etc</a>
+</li>
+        <li><a href="source/api/events.html#module-scitex.events">scitex.events</a>
+</li>
+        <li><a href="api/scitex.gen.html#module-scitex.gen">scitex.gen</a>, <a href="source/api/gen.html#module-scitex.gen">[1]</a>
+</li>
+        <li><a href="source/api/gists.html#module-scitex.gists">scitex.gists</a>
+</li>
+        <li><a href="source/api/git.html#module-scitex.git">scitex.git</a>
+</li>
+        <li><a href="api/scitex.introspect.html#module-scitex.introspect">scitex.introspect</a>, <a href="source/api/introspect.html#module-scitex.introspect">[1]</a>
+</li>
+        <li><a href="api/scitex.io.html#module-scitex.io">scitex.io</a>, <a href="source/api/io.html#module-scitex.io">[1]</a>
+</li>
+        <li><a href="source/api/linalg.html#module-scitex.linalg">scitex.linalg</a>
+</li>
+        <li><a href="api/scitex.logging.html#module-scitex.logging">scitex.logging</a>, <a href="source/api/logging.html#module-scitex.logging">[1]</a>
+</li>
+        <li><a href="source/api/media.html#module-scitex.media">scitex.media</a>
+</li>
+        <li><a href="source/api/module.html#module-scitex.module">scitex.module</a>
+</li>
+        <li><a href="source/api/msword.html#module-scitex.msword">scitex.msword</a>
+</li>
+        <li><a href="api/scitex.nn.html#module-scitex.nn">scitex.nn</a>, <a href="source/api/nn.html#module-scitex.nn">[1]</a>
+</li>
+        <li><a href="source/api/notebook.html#module-scitex.notebook">scitex.notebook</a>
+</li>
+        <li><a href="source/api/notification.html#module-scitex.notification">scitex.notification</a>
+</li>
+        <li><a href="source/api/os.html#module-scitex.os">scitex.os</a>
+</li>
+        <li><a href="source/api/parallel.html#module-scitex.parallel">scitex.parallel</a>
+</li>
+        <li><a href="api/scitex.path.html#module-scitex.path">scitex.path</a>, <a href="source/api/path.html#module-scitex.path">[1]</a>
+</li>
+        <li><a href="api/scitex.pd.html#module-scitex.pd">scitex.pd</a>, <a href="source/api/pd.html#module-scitex.pd">[1]</a>
+</li>
+        <li><a href="api/scitex.plt.html#module-scitex.plt">scitex.plt</a>
+</li>
+        <li><a href="source/api/project.html#module-scitex.project">scitex.project</a>
+</li>
+        <li><a href="api/scitex.repro.html#module-scitex.repro">scitex.repro</a>, <a href="source/api/repro.html#module-scitex.repro">[1]</a>
+</li>
+        <li><a href="source/api/resource.html#module-scitex.resource">scitex.resource</a>
+</li>
+        <li><a href="source/api/rng.html#module-scitex.rng">scitex.rng</a>
+</li>
+        <li><a href="source/api/schema.html#module-scitex.schema">scitex.schema</a>
+</li>
+        <li><a href="api/scitex.scholar.html#module-scitex.scholar">scitex.scholar</a>, <a href="source/api/scholar.html#module-scitex.scholar">[1]</a>
+</li>
+        <li><a href="source/api/security.html#module-scitex.security">scitex.security</a>
+</li>
+        <li><a href="api/scitex.session.html#module-scitex.session">scitex.session</a>, <a href="source/api/session.html#module-scitex.session">[1]</a>
+</li>
+        <li><a href="source/api/sh.html#module-scitex.sh">scitex.sh</a>
+</li>
+        <li><a href="api/scitex.social.html#module-scitex.social">scitex.social</a>, <a href="source/api/social.html#module-scitex.social">[1]</a>
+</li>
+        <li><a href="api/scitex.stats.html#module-scitex.stats">scitex.stats</a>, <a href="source/api/stats.html#module-scitex.stats">[1]</a>
+</li>
+        <li><a href="api/scitex.str.html#module-scitex.str">scitex.str</a>, <a href="source/api/str.html#module-scitex.str">[1]</a>
+</li>
+        <li><a href="api/scitex.template.html#module-scitex.template">scitex.template</a>, <a href="source/api/template.html#module-scitex.template">[1]</a>
+</li>
+        <li><a href="source/api/tex.html#module-scitex.tex">scitex.tex</a>
+</li>
+        <li><a href="source/api/torch.html#module-scitex.torch">scitex.torch</a>
+</li>
+        <li><a href="source/api/tunnel.html#module-scitex.tunnel">scitex.tunnel</a>
+</li>
+        <li><a href="source/api/types.html#module-scitex.types">scitex.types</a>
+</li>
+        <li><a href="source/api/ui.html#module-scitex.ui">scitex.ui</a>
+</li>
+        <li><a href="source/api/web.html#module-scitex.web">scitex.web</a>
+</li>
+        <li><a href="api/scitex.writer.html#module-scitex.writer">scitex.writer</a>, <a href="source/api/writer.html#module-scitex.writer">[1]</a>
+</li>
+      </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/os.html#scitex.os.mv">mv() (in module scitex.os)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="N">N</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/msword.html#id0">name (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.name">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.NNError">NNError</a>, <a href="source/api/logging.html#scitex.logging.NNError">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#id4">normal_style (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.normal_style">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/msword.html#scitex.msword.normalize_section_headings">normalize_section_headings() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/notebook.html#id0">notebook_path (scitex.notebook.CompiledNotebook attribute)</a>, <a href="source/api/notebook.html#scitex.notebook.CompiledNotebook.notebook_path">[1]</a>
+</li>
+      <li><a href="source/api/compat.html#scitex.compat.notify">notify() (in module scitex.compat)</a>
+</li>
+      <li><a href="source/api/compat.html#scitex.compat.notify_async">notify_async() (in module scitex.compat)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="O">O</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.clew.html#scitex.clew.on_session_close">on_session_close() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.on_session_close">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.on_session_start">on_session_start() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.on_session_start">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache">openathens_cache (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.openathens_cache">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf">output_pdf (scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.output_pdf">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="P">P</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/cv.html#scitex.cv.pad">pad() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/notebook.html#scitex.notebook.parse_notebook">parse_notebook() (in module scitex.notebook)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.parse_src_file">parse_src_file() (in module scitex.config)</a>, <a href="source/api/config.html#scitex.config.parse_src_file">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.PathError">PathError</a>, <a href="source/api/logging.html#scitex.logging.PathError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.PathNotFoundError">PathNotFoundError</a>, <a href="source/api/logging.html#scitex.logging.PathNotFoundError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.PDFDownloadError">PDFDownloadError</a>, <a href="source/api/logging.html#scitex.logging.PDFDownloadError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.PDFExtractionError">PDFExtractionError</a>, <a href="source/api/logging.html#scitex.logging.PDFExtractionError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.PerformanceWarning">PerformanceWarning</a>, <a href="source/api/logging.html#scitex.logging.PerformanceWarning">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.PlottingError">PlottingError</a>, <a href="source/api/logging.html#scitex.logging.PlottingError">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/cv.html#scitex.cv.polylines">polylines() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.BaseWordProfile.post_import_hooks">post_import_hooks (scitex.msword.BaseWordProfile attribute)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.BaseWordProfile.pre_export_hooks">pre_export_hooks (scitex.msword.BaseWordProfile attribute)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.preserve_bold_tokens">preserve_bold_tokens() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexConfig.print">print() (scitex.config.ScitexConfig method)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig.print">[1]</a>
+</li>
+      <li><a href="source/api/cli.html#scitex.cli.print_help_recursive">print_help_recursive() (in module scitex.cli)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions">print_resolutions() (scitex.config.PriorityConfig method)</a>, <a href="source/api/config.html#scitex.config.PriorityConfig.print_resolutions">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.PriorityConfig">PriorityConfig (class in scitex.config)</a>, <a href="source/api/config.html#scitex.config.PriorityConfig">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.pull_local">pull_local() (in module scitex.dev)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="Q">Q</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/context.html#scitex.context.quiet">quiet() (in module scitex.context)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="R">R</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager">RandomStateManager (class in scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager">(class in scitex.rng)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexConfig.raw">raw (scitex.config.ScitexConfig property)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig.raw">[1]</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.FilesBackend.read">read() (scitex.app.FilesBackend method)</a>
+
+      <ul>
+        <li><a href="source/api/msword.html#scitex.msword.WordReader.read">(scitex.msword.WordReader method)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/app.html#scitex.app.read_file">read_file() (in module scitex.app)</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.readlink">readlink() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.readlink">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme">readme (scitex.writer.ManuscriptTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree.readme">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.readme">(scitex.writer.RevisionTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.readme">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme">(scitex.writer.SupplementaryTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.readme">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/cv.html#scitex.cv.rectangle">rectangle() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/msword.html#id5">reference_section_titles (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.reference_section_titles">[1]</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.register_backend">register_backend() (in module scitex.app)</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.register_intermediate">register_intermediate() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.register_intermediate">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.register_profile">register_profile() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.reject_all_tracked_changes">reject_all_tracked_changes() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.remote_commit">remote_commit() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.remote_diff">remote_diff() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.FilesBackend.rename">rename() (scitex.app.FilesBackend method)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.rename_file">rename_file() (in module scitex.app)</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.rerun">rerun() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.rerun">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.rerun_claims">rerun_claims() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.rerun_claims">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.rerun_dag">rerun_dag() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.rerun_dag">[1]</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.reset">reset() (in module scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.reset">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.reset">(in module scitex.rng)</a>
+</li>
+      </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.logging.html#scitex.logging.resetwarnings">resetwarnings() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.resetwarnings">[1]</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.resize">resize() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/config.html#scitex.config.PriorityConfig.resolution_log">resolution_log (scitex.config.PriorityConfig attribute)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.PriorityConfig.resolve">resolve() (scitex.config.PriorityConfig method)</a>, <a href="source/api/config.html#scitex.config.PriorityConfig.resolve">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.config.html#scitex.config.ScitexConfig.resolve">(scitex.config.ScitexConfig method)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig.resolve">[1]</a>
+</li>
+        <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.resolve">(scitex.config.ScitexPaths method)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.resolve">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.path.html#scitex.path.resolve_symlinks">resolve_symlinks() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.resolve_symlinks">[1]</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore">restore() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.restore">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.restore">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/dev.html#scitex.dev.Result">Result (class in scitex.dev)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.result_to_mcp">result_to_mcp() (in module scitex.dev)</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.revision">revision (scitex.writer.RevisionTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.revision">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree">RevisionTree (class in scitex.writer)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.rng">rng (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.rng">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root">root (scitex.writer.ManuscriptTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree.root">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.root">(scitex.writer.RevisionTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.root">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root">(scitex.writer.SupplementaryTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.root">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/cv.html#scitex.cv.rotate">rotate() (in module scitex.cv)</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.run">run() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.run">[1]</a>
+
+      <ul>
+        <li><a href="source/api/parallel.html#scitex.parallel.run">(in module scitex.parallel)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/dev.html#scitex.dev.run_as_cli">run_as_cli() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.run_as_mcp">run_as_mcp() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/notebook.html#id3">runs (scitex.notebook.CompiledNotebook attribute)</a>, <a href="source/api/notebook.html#scitex.notebook.CompiledNotebook.runs">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="S">S</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/cv.html#scitex.cv.save">save() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/security.html#scitex.security.save_alerts_to_file">save_alerts_to_file() (in module scitex.security)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.save_docx">save_docx() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.SaveError">SaveError</a>, <a href="source/api/logging.html#scitex.logging.SaveError">[1]</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.scaffold">scaffold() (in module scitex.app)</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.scholar">scholar (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.scholar">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache">scholar_cache (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.scholar_cache">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library">scholar_library (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.scholar_library">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.ScholarError">ScholarError</a>, <a href="source/api/logging.html#scitex.logging.ScholarError">[1]</a>
+</li>
+      <li>
+    scitex.ai
+
+      <ul>
+        <li><a href="api/scitex.ai.html#module-scitex.ai">module</a>, <a href="source/api/ai.html#module-scitex.ai">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.app
+
+      <ul>
+        <li><a href="source/api/app.html#module-scitex.app">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.audio
+
+      <ul>
+        <li><a href="source/api/audio.html#module-scitex.audio">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.audit
+
+      <ul>
+        <li><a href="source/api/audit.html#module-scitex.audit">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.benchmark
+
+      <ul>
+        <li><a href="source/api/benchmark.html#module-scitex.benchmark">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.bridge
+
+      <ul>
+        <li><a href="source/api/bridge.html#module-scitex.bridge">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.browser
+
+      <ul>
+        <li><a href="source/api/browser.html#module-scitex.browser">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.canvas
+
+      <ul>
+        <li><a href="source/api/canvas.html#module-scitex.canvas">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.capture
+
+      <ul>
+        <li><a href="source/api/capture.html#module-scitex.capture">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.clew
+
+      <ul>
+        <li><a href="api/scitex.clew.html#module-scitex.clew">module</a>, <a href="source/api/clew.html#module-scitex.clew">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.cli
+
+      <ul>
+        <li><a href="source/api/cli.html#module-scitex.cli">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.cloud
+
+      <ul>
+        <li><a href="source/api/cloud.html#module-scitex.cloud">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.compat
+
+      <ul>
+        <li><a href="source/api/compat.html#module-scitex.compat">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.config
+
+      <ul>
+        <li><a href="api/scitex.config.html#module-scitex.config">module</a>, <a href="source/api/config.html#module-scitex.config">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.container
+
+      <ul>
+        <li><a href="source/api/container.html#module-scitex.container">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.context
+
+      <ul>
+        <li><a href="source/api/context.html#module-scitex.context">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.cv
+
+      <ul>
+        <li><a href="source/api/cv.html#module-scitex.cv">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.dataset
+
+      <ul>
+        <li><a href="source/api/dataset.html#module-scitex.dataset">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.datetime
+
+      <ul>
+        <li><a href="source/api/datetime.html#module-scitex.datetime">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.db
+
+      <ul>
+        <li><a href="api/scitex.db.html#module-scitex.db">module</a>, <a href="source/api/db.html#module-scitex.db">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.decorators
+
+      <ul>
+        <li><a href="api/scitex.decorators.html#module-scitex.decorators">module</a>, <a href="source/api/decorators.html#module-scitex.decorators">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.dev
+
+      <ul>
+        <li><a href="source/api/dev.html#module-scitex.dev">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.diagram
+
+      <ul>
+        <li><a href="api/scitex.diagram.html#module-scitex.diagram">module</a>, <a href="source/api/diagram.html#module-scitex.diagram">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.dict
+
+      <ul>
+        <li><a href="api/scitex.dict.html#module-scitex.dict">module</a>, <a href="source/api/dict.html#module-scitex.dict">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.dsp
+
+      <ul>
+        <li><a href="api/scitex.dsp.html#module-scitex.dsp">module</a>, <a href="source/api/dsp.html#module-scitex.dsp">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.etc
+
+      <ul>
+        <li><a href="source/api/etc.html#module-scitex.etc">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.events
+
+      <ul>
+        <li><a href="source/api/events.html#module-scitex.events">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.gen
+
+      <ul>
+        <li><a href="api/scitex.gen.html#module-scitex.gen">module</a>, <a href="source/api/gen.html#module-scitex.gen">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.gists
+
+      <ul>
+        <li><a href="source/api/gists.html#module-scitex.gists">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.git
+
+      <ul>
+        <li><a href="source/api/git.html#module-scitex.git">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.introspect
+
+      <ul>
+        <li><a href="api/scitex.introspect.html#module-scitex.introspect">module</a>, <a href="source/api/introspect.html#module-scitex.introspect">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.io
+
+      <ul>
+        <li><a href="api/scitex.io.html#module-scitex.io">module</a>, <a href="source/api/io.html#module-scitex.io">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.linalg
+
+      <ul>
+        <li><a href="source/api/linalg.html#module-scitex.linalg">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.logging
+
+      <ul>
+        <li><a href="api/scitex.logging.html#module-scitex.logging">module</a>, <a href="source/api/logging.html#module-scitex.logging">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.media
+
+      <ul>
+        <li><a href="source/api/media.html#module-scitex.media">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.module
+
+      <ul>
+        <li><a href="source/api/module.html#module-scitex.module">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.msword
+
+      <ul>
+        <li><a href="source/api/msword.html#module-scitex.msword">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.nn
+
+      <ul>
+        <li><a href="api/scitex.nn.html#module-scitex.nn">module</a>, <a href="source/api/nn.html#module-scitex.nn">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.notebook
+
+      <ul>
+        <li><a href="source/api/notebook.html#module-scitex.notebook">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.notification
+
+      <ul>
+        <li><a href="source/api/notification.html#module-scitex.notification">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.os
+
+      <ul>
+        <li><a href="source/api/os.html#module-scitex.os">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.parallel
+
+      <ul>
+        <li><a href="source/api/parallel.html#module-scitex.parallel">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.path
+
+      <ul>
+        <li><a href="api/scitex.path.html#module-scitex.path">module</a>, <a href="source/api/path.html#module-scitex.path">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.pd
+
+      <ul>
+        <li><a href="api/scitex.pd.html#module-scitex.pd">module</a>, <a href="source/api/pd.html#module-scitex.pd">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.plt
+
+      <ul>
+        <li><a href="api/scitex.plt.html#module-scitex.plt">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.project
+
+      <ul>
+        <li><a href="source/api/project.html#module-scitex.project">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.repro
+
+      <ul>
+        <li><a href="api/scitex.repro.html#module-scitex.repro">module</a>, <a href="source/api/repro.html#module-scitex.repro">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.resource
+
+      <ul>
+        <li><a href="source/api/resource.html#module-scitex.resource">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.rng
+
+      <ul>
+        <li><a href="source/api/rng.html#module-scitex.rng">module</a>
+</li>
+      </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li>
+    scitex.schema
+
+      <ul>
+        <li><a href="source/api/schema.html#module-scitex.schema">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.scholar
+
+      <ul>
+        <li><a href="api/scitex.scholar.html#module-scitex.scholar">module</a>, <a href="source/api/scholar.html#module-scitex.scholar">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.security
+
+      <ul>
+        <li><a href="source/api/security.html#module-scitex.security">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.session
+
+      <ul>
+        <li><a href="api/scitex.session.html#module-scitex.session">module</a>, <a href="source/api/session.html#module-scitex.session">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.sh
+
+      <ul>
+        <li><a href="source/api/sh.html#module-scitex.sh">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.social
+
+      <ul>
+        <li><a href="api/scitex.social.html#module-scitex.social">module</a>, <a href="source/api/social.html#module-scitex.social">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.stats
+
+      <ul>
+        <li><a href="api/scitex.stats.html#module-scitex.stats">module</a>, <a href="source/api/stats.html#module-scitex.stats">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.str
+
+      <ul>
+        <li><a href="api/scitex.str.html#module-scitex.str">module</a>, <a href="source/api/str.html#module-scitex.str">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.template
+
+      <ul>
+        <li><a href="api/scitex.template.html#module-scitex.template">module</a>, <a href="source/api/template.html#module-scitex.template">[1]</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.tex
+
+      <ul>
+        <li><a href="source/api/tex.html#module-scitex.tex">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.torch
+
+      <ul>
+        <li><a href="source/api/torch.html#module-scitex.torch">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.tunnel
+
+      <ul>
+        <li><a href="source/api/tunnel.html#module-scitex.tunnel">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.types
+
+      <ul>
+        <li><a href="source/api/types.html#module-scitex.types">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.ui
+
+      <ul>
+        <li><a href="source/api/ui.html#module-scitex.ui">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.web
+
+      <ul>
+        <li><a href="source/api/web.html#module-scitex.web">module</a>
+</li>
+      </ul></li>
+      <li>
+    scitex.writer
+
+      <ul>
+        <li><a href="api/scitex.writer.html#module-scitex.writer">module</a>, <a href="source/api/writer.html#module-scitex.writer">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexConfig">ScitexConfig (class in scitex.config)</a>, <a href="source/api/config.html#scitex.config.ScitexConfig">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning">SciTeXDeprecationWarning</a>, <a href="source/api/logging.html#scitex.logging.SciTeXDeprecationWarning">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.SciTeXError">SciTeXError</a>, <a href="source/api/logging.html#scitex.logging.SciTeXError">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.ScitexError">ScitexError</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths">ScitexPaths (class in scitex.config)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.SciTeXWarning">SciTeXWarning</a>, <a href="source/api/logging.html#scitex.logging.SciTeXWarning">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots">screenshots (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.screenshots">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.search">search() (in module scitex.dev)</a>
+
+      <ul>
+        <li><a href="source/api/etc.html#scitex.etc.search">(in module scitex.etc)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/dev.html#scitex.dev.search_docs">search_docs() (in module scitex.dev)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.SearchError">SearchError</a>, <a href="source/api/logging.html#scitex.logging.SearchError">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS">SENSITIVE_EXPRESSIONS (scitex.config.PriorityConfig attribute)</a>, <a href="source/api/config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.set_level">set_level() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.set_level">[1]</a>
+</li>
+      <li><a href="source/api/plt.html#ax.set_xyt">set_xyt() (ax method)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.ShapeError">ShapeError</a>, <a href="source/api/logging.html#scitex.logging.ShapeError">[1]</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.sharpen">sharpen() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.side_effects">side_effects (scitex.dev.Result attribute)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.SideEffect">SideEffect (class in scitex.dev)</a>
+</li>
+      <li><a href="source/api/gists.html#scitex.gists.sigmacro_process_figure_s">sigmacro_process_figure_s() (in module scitex.gists)</a>
+</li>
+      <li><a href="source/api/gists.html#scitex.gists.SigMacro_processFigure_S">SigMacro_processFigure_S() (in module scitex.gists)</a>
+</li>
+      <li><a href="source/api/gists.html#scitex.gists.sigmacro_to_blue">sigmacro_to_blue() (in module scitex.gists)</a>
+</li>
+      <li><a href="source/api/gists.html#scitex.gists.SigMacro_toBlue">SigMacro_toBlue() (in module scitex.gists)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_barplot">sns_barplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_boxplot">sns_boxplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_heatmap">sns_heatmap() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_histplot">sns_histplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_jointplot">sns_jointplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_kdeplot">sns_kdeplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_lineplot">sns_lineplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_pairplot">sns_pairplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_scatterplot">sns_scatterplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_stripplot">sns_stripplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_swarmplot">sns_swarmplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.sns_violinplot">sns_violinplot() (ax method)</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.split">split() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.split">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.stamp">stamp() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.stamp">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.stats">stats() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.stats">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.StatsError">StatsError</a>, <a href="source/api/logging.html#scitex.logging.StatsError">[1]</a>
+</li>
+      <li><a href="api/scitex.clew.html#scitex.clew.status">status() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.status">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr">stderr (scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.stderr">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout">stdout (scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.stdout">[1]</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_bar">stx_bar() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_barh">stx_barh() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_box">stx_box() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_conf_mat">stx_conf_mat() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_ecdf">stx_ecdf() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_errorbar">stx_errorbar() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_fillv">stx_fillv() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_heatmap">stx_heatmap() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_image">stx_image() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_joyplot">stx_joyplot() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_kde">stx_kde() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_line">stx_line() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_mean_ci">stx_mean_ci() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_mean_std">stx_mean_std() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_median_iqr">stx_median_iqr() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_raster">stx_raster() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_rectangle">stx_rectangle() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_scatter">stx_scatter() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_scatter_hist">stx_scatter_hist() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_shaded_line">stx_shaded_line() (ax method)</a>
+</li>
+      <li><a href="source/api/plt.html#ax.stx_violin">stx_violin() (ax method)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.StyleWarning">StyleWarning</a>, <a href="source/api/logging.html#scitex.logging.StyleWarning">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.success">success (scitex.dev.Result attribute)</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.success">(scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.success">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/msword.html#scitex.msword.summarize_diff">summarize_diff() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary">supplementary (scitex.writer.SupplementaryTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.supplementary">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff">supplementary_diff (scitex.writer.SupplementaryTree attribute)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.supplementary_diff">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree">SupplementaryTree (class in scitex.writer)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.supports_return_as">supports_return_as() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/context.html#scitex.context.suppress_output">suppress_output() (in module scitex.context)</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.symlink">symlink() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.symlink">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.sync_all">sync_all() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.sync_host">sync_host() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.sync_local">sync_local() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.sync_tags">sync_tags() (in module scitex.dev)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="T">T</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/msword.html#id7">table_caption_prefixes (scitex.msword.BaseWordProfile attribute)</a>, <a href="source/api/msword.html#scitex.msword.BaseWordProfile.table_caption_prefixes">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.SideEffect.target">target (scitex.dev.SideEffect attribute)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.Tee">Tee (class in scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.Tee">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.tee">tee() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.tee">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.TemplateError">TemplateError</a>, <a href="source/api/logging.html#scitex.logging.TemplateError">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.TemplateViolationError">TemplateViolationError</a>, <a href="source/api/logging.html#scitex.logging.TemplateViolationError">[1]</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed">temporary_seed() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.temporary_seed">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.temporary_seed">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor">test_monitor (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.test_monitor">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.TestError">TestError</a>, <a href="source/api/logging.html#scitex.logging.TestError">[1]</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.text">text() (in module scitex.cv)</a>
+</li>
+      <li><a href="api/scitex.path.html#scitex.path.this_path">this_path() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.this_path">[1]</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.threshold">threshold() (in module scitex.cv)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.repro.html#scitex.repro.timestamp">timestamp() (in module scitex.repro)</a>, <a href="source/api/repro.html#scitex.repro.timestamp">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.timestamp">(in module scitex.rng)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/cv.html#scitex.cv.to_bgr">to_bgr() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.to_dict">to_dict() (scitex.dev.Result method)</a>
+
+      <ul>
+        <li><a href="source/api/dev.html#scitex.dev.ScitexError.to_dict">(scitex.dev.ScitexError method)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/cv.html#scitex.cv.to_gray">to_gray() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.to_json">to_json() (scitex.dev.Result method)</a>
+</li>
+      <li><a href="source/api/notebook.html#scitex.notebook.CompiledNotebook.to_mermaid">to_mermaid() (scitex.notebook.CompiledNotebook method)</a>
+</li>
+      <li><a href="source/api/cv.html#scitex.cv.to_rgb">to_rgb() (in module scitex.cv)</a>
+</li>
+      <li><a href="source/api/notebook.html#scitex.notebook.CompiledNotebook.to_script">to_script() (scitex.notebook.CompiledNotebook method)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.TranslatorError">TranslatorError</a>, <a href="source/api/logging.html#scitex.logging.TranslatorError">[1]</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.try_import_optional">try_import_optional() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.SideEffect.type">type (scitex.dev.SideEffect attribute)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="U">U</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/dev.html#scitex.dev.SideEffect.undoable">undoable (scitex.dev.SideEffect attribute)</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.UnitWarning">UnitWarning</a>, <a href="source/api/logging.html#scitex.logging.UnitWarning">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.path.html#scitex.path.unlink_symlink">unlink_symlink() (in module scitex.path)</a>, <a href="source/api/path.html#scitex.path.unlink_symlink">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.usage">usage() (in module scitex.writer)</a>, <a href="source/api/writer.html#scitex.writer.usage">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="V">V</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/app.html#scitex.app.validate">validate() (in module scitex.app)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.validate_document">validate_document() (in module scitex.msword)</a>
+</li>
+      <li><a href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify">verify() (scitex.repro.RandomStateManager method)</a>, <a href="source/api/repro.html#scitex.repro.RandomStateManager.verify">[1]</a>
+
+      <ul>
+        <li><a href="source/api/rng.html#scitex.rng.RandomStateManager.verify">(scitex.rng.RandomStateManager method)</a>
+</li>
+      </ul></li>
+      <li><a href="api/scitex.clew.html#scitex.clew.verify_claim">verify_claim() (in module scitex.clew)</a>, <a href="source/api/clew.html#scitex.clew.verify_claim">[1]</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/os.html#scitex.os.verify_host">verify_host() (in module scitex.os)</a>
+</li>
+      <li><a href="source/api/notebook.html#scitex.notebook.verify_notebook">verify_notebook() (in module scitex.notebook)</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure">verify_structure() (scitex.writer.ManuscriptTree method)</a>, <a href="source/api/writer.html#scitex.writer.ManuscriptTree.verify_structure">[1]</a>
+
+      <ul>
+        <li><a href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure">(scitex.writer.RevisionTree method)</a>, <a href="source/api/writer.html#scitex.writer.RevisionTree.verify_structure">[1]</a>
+</li>
+        <li><a href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure">(scitex.writer.SupplementaryTree method)</a>, <a href="source/api/writer.html#scitex.writer.SupplementaryTree.verify_structure">[1]</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/dev.html#scitex.dev.Result.version">version (scitex.dev.Result attribute)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="W">W</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/scitex.logging.html#scitex.logging.warn">warn() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.warn">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.warn_data_loss">warn_data_loss() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.warn_data_loss">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.warn_deprecated">warn_deprecated() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.warn_deprecated">[1]</a>
+</li>
+      <li><a href="api/scitex.logging.html#scitex.logging.warn_performance">warn_performance() (in module scitex.logging)</a>, <a href="source/api/logging.html#scitex.logging.warn_performance">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings">warnings (scitex.writer.CompilationResult attribute)</a>, <a href="source/api/writer.html#scitex.writer.CompilationResult.warnings">[1]</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.Writer.watch">watch() (scitex.writer.Writer method)</a>, <a href="source/api/writer.html#scitex.writer.Writer.watch">[1]</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.WordReader">WordReader (class in scitex.msword)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.WordWriter">WordWriter (class in scitex.msword)</a>
+</li>
+      <li><a href="source/api/dev.html#scitex.dev.wrap_as_cli">wrap_as_cli() (in module scitex.dev)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/dev.html#scitex.dev.wrap_as_mcp">wrap_as_mcp() (in module scitex.dev)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.wrap_as_tracked_deletion">wrap_as_tracked_deletion() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/msword.html#scitex.msword.wrap_as_tracked_insertion">wrap_as_tracked_insertion() (in module scitex.msword)</a>
+</li>
+      <li><a href="source/api/app.html#scitex.app.FilesBackend.write">write() (scitex.app.FilesBackend method)</a>
+
+      <ul>
+        <li><a href="api/scitex.logging.html#scitex.logging.Tee.write">(scitex.logging.Tee method)</a>, <a href="source/api/logging.html#scitex.logging.Tee.write">[1]</a>
+</li>
+        <li><a href="source/api/msword.html#scitex.msword.WordWriter.write">(scitex.msword.WordWriter method)</a>
+</li>
+      </ul></li>
+      <li><a href="source/api/app.html#scitex.app.write_file">write_file() (in module scitex.app)</a>
+</li>
+      <li><a href="api/scitex.writer.html#scitex.writer.Writer">Writer (class in scitex.writer)</a>, <a href="source/api/writer.html#scitex.writer.Writer">[1]</a>
+</li>
+      <li><a href="api/scitex.config.html#scitex.config.ScitexPaths.writer">writer (scitex.config.ScitexPaths property)</a>, <a href="source/api/config.html#scitex.config.ScitexPaths.writer">[1]</a>
+</li>
+  </ul></td>
+</tr></table>
+
+<h2 id="Y">Y</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/api/etc.html#scitex.etc.yield_grids">yield_grids() (in module scitex.etc)</a>
+</li>
+  </ul></td>
+</tr></table>
+
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/index.html b/src/scitex/_sphinx_html/index.html
new file mode 100644
index 000000000..cda5bd9dc
--- /dev/null
+++ b/src/scitex/_sphinx_html/index.html
@@ -0,0 +1,843 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="./">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>SciTeX – Modular Python Toolkit for Researchers and AI Agents &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=7026087e"></script>
+      <script src="_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="genindex.html" />
+    <link rel="search" title="Search" href="search.html" />
+    <link rel="next" title="Module Overview" href="modules/index.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="#" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="#">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="#" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">SciTeX – Modular Python Toolkit for Researchers and AI Agents</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/index.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="scitex-modular-python-toolkit-for-researchers-and-ai-agents">
+<h1>SciTeX – Modular Python Toolkit for Researchers and AI Agents<a class="headerlink" href="#scitex-modular-python-toolkit-for-researchers-and-ai-agents" title="Link to this heading"></a></h1>
+<p>A Python framework for reproducible scientific research.</p>
+<a class="reference internal image-reference" href="_images/workflow.png"><img alt="SciTeX Ecosystem" class="align-center" src="_images/workflow.png" style="width: 800px;" />
+</a>
+<section id="role-in-scitex-ecosystem">
+<h2>Role in SciTeX Ecosystem<a class="headerlink" href="#role-in-scitex-ecosystem" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">scitex</span></code> is the <strong>unified orchestrator</strong> package. It re-exports from sub-packages
+so users have a single import (<code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex</span></code>). It does not contain runtime logic
+itself – it delegates to sub-packages.</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>scitex (this package) -- orchestrator, templates, CLI, MCP server
+  |-- scitex.app  &lt;-  scitex-app   (runtime SDK: file I/O, config, validation)
+  |-- scitex.ui   &lt;-  scitex-ui    (React/TS components: workspace, data-table)
+  +-- scitex.plt  &lt;-  figrecipe    (figures: plotting, diagrams, recipes)
+</pre></div>
+</div>
+<ul class="simple">
+<li><p><strong>scitex-app</strong> (<a class="reference external" href="https://scitex-app.readthedocs.io/">docs</a>): Runtime SDK that apps import at execution time</p></li>
+<li><p><strong>scitex-ui</strong> (<a class="reference external" href="https://scitex-ui.readthedocs.io/">docs</a>): Shared React/TypeScript component library</p></li>
+<li><p><strong>figrecipe</strong> (<a class="reference external" href="https://figrecipe.readthedocs.io/">docs</a>): Reference app – figures, diagrams, recipes</p></li>
+</ul>
+</section>
+<section id="four-freedoms-for-research">
+<h2>Four Freedoms for Research<a class="headerlink" href="#four-freedoms-for-research" title="Link to this heading"></a></h2>
+<ol class="arabic simple" start="0">
+<li><p>The freedom to <strong>run</strong> your research anywhere – your machine, your terms.</p></li>
+<li><p>The freedom to <strong>study</strong> how every step works – from raw data to final manuscript.</p></li>
+<li><p>The freedom to <strong>redistribute</strong> your workflows, not just your papers.</p></li>
+<li><p>The freedom to <strong>modify</strong> any module and share improvements with the community.</p></li>
+</ol>
+<p>AGPL-3.0 – because research infrastructure deserves the same freedoms as the software it runs on.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">n_samples</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="n">plt</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">):</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span><span class="p">,</span> <span class="n">n_samples</span><span class="p">)</span>
+    <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mf">0.1</span><span class="p">,</span> <span class="n">n_samples</span><span class="p">)</span>
+
+    <span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+    <span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;sine.png&quot;</span><span class="p">)</span>       <span class="c1"># PNG + CSV + YAML recipe</span>
+    <span class="k">return</span> <span class="mi">0</span>
+</pre></div>
+</div>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> – Reproducible runs with CLI, config, and provenance tracking</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.io</span></code> – Save/load 30+ formats through a single interface</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.plt</span></code> – Publication figures with auto CSV data export</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.stats</span></code> – 23 statistical tests with effect sizes and CI</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code> – Search, download, and enrich papers</p></li>
+<li><p>120+ MCP tools for AI-assisted research workflows</p></li>
+</ul>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#three-interfaces">Three Interfaces</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
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diff --git a/src/scitex/_sphinx_html/installation.html b/src/scitex/_sphinx_html/installation.html
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--- /dev/null
+++ b/src/scitex/_sphinx_html/installation.html
@@ -0,0 +1,845 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="./">
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+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Installation &mdash; SciTeX v0.0.0</title>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Installation</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/installation.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="installation">
+<h1>Installation<a class="headerlink" href="#installation" title="Link to this heading"></a></h1>
+<section id="requirements">
+<h2>Requirements<a class="headerlink" href="#requirements" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>Python 3.10+</strong></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">uv</span></code> (strongly recommended) — install with <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">uv</span></code> or
+<code class="docutils literal notranslate"><span class="pre">curl</span> <span class="pre">-LsSf</span> <span class="pre">https://astral.sh/uv/install.sh</span> <span class="pre">|</span> <span class="pre">sh</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pip</span></code> 21+ also works, but expect 30–90 min for <code class="docutils literal notranslate"><span class="pre">scitex[all]</span></code>
+(see warning below)</p></li>
+</ul>
+<div class="admonition warning">
+<p class="admonition-title">Warning</p>
+<p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">&quot;scitex[all]&quot;</span></code> typically takes <strong>30–90 minutes</strong> because
+pip’s serial resolver walks version histories of the large transitive
+dependency set (numpy/pandas/torch/jax/playwright/openalex-local/…).
+Use <strong>uv</strong> instead — it resolves the same set in parallel in <strong>1–3
+minutes</strong>. Every <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span></code> line on this page also works as
+<code class="docutils literal notranslate"><span class="pre">uv</span> <span class="pre">pip</span> <span class="pre">install</span></code> and we recommend the uv form.</p>
+</div>
+</section>
+<section id="core-install">
+<h2>Core Install<a class="headerlink" href="#core-install" title="Link to this heading"></a></h2>
+<p>The base package pulls in only lightweight dependencies and gives you access
+to session management, path utilities, string helpers, and the module
+discovery system.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>uv<span class="w"> </span>pip<span class="w"> </span>install<span class="w"> </span>scitex<span class="w">          </span><span class="c1"># recommended</span>
+pip<span class="w"> </span>install<span class="w"> </span>scitex<span class="w">              </span><span class="c1"># also works, slower for [all]</span>
+</pre></div>
+</div>
+</section>
+<section id="recommended-install-everything">
+<h2>Recommended: Install Everything<a class="headerlink" href="#recommended-install-everything" title="Link to this heading"></a></h2>
+<p>If you want the full experience (plotting, statistics, I/O, scholar, writer,
+and every other module):</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>uv<span class="w"> </span>pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[all]&quot;</span><span class="w">   </span><span class="c1"># ~3 min</span>
+pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[all]&quot;</span><span class="w">       </span><span class="c1"># ~30–90 min (resolver thrash)</span>
+</pre></div>
+</div>
+</section>
+<section id="research-workflow">
+<h2>Research Workflow<a class="headerlink" href="#research-workflow" title="Link to this heading"></a></h2>
+<p>For a typical research project you need figures, statistics, and literature
+search but not audio, browser automation, or cloud tools:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[plt,stats,scholar]&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="per-module-extras">
+<h2>Per-Module Extras<a class="headerlink" href="#per-module-extras" title="Link to this heading"></a></h2>
+<p>Install only what you need. Each extra maps to a self-contained capability.</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 21.4%" />
+<col style="width: 78.6%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Extra</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">plt</span></code></p></td>
+<td><p>Publication-ready figures via figrecipe (matplotlib, seaborn, Pillow)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">stats</span></code></p></td>
+<td><p>Hypothesis testing, effect sizes, power analysis (scitex-stats, scipy, statsmodels)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">io</span></code></p></td>
+<td><p>Unified I/O for 40+ formats (HDF5, Excel, YAML, PDF, images, …)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">scholar</span></code></p></td>
+<td><p>Literature search and PDF management (CrossRef, OpenAlex, Semantic Scholar)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">writer</span></code></p></td>
+<td><p>LaTeX manuscript compilation, BibTeX management, Overleaf export</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">audio</span></code></p></td>
+<td><p>Text-to-speech and audio utilities (scitex-audio)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">ai</span></code></p></td>
+<td><p>LLM APIs (OpenAI, Anthropic, Google, Groq) and ML tools (scikit-learn)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">browser</span></code></p></td>
+<td><p>Web automation via Playwright</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">capture</span></code></p></td>
+<td><p>Screenshot capture (mss, Playwright)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">dataset</span></code></p></td>
+<td><p>Scientific dataset access (DANDI, OpenNeuro, PhysioNet)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">cloud</span></code></p></td>
+<td><p>Cloud integration utilities</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">app</span></code></p></td>
+<td><p>Unified file storage SDK (scitex-app)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">session</span></code></p></td>
+<td><p>Session decorator with reproducibility logging</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">diagram</span></code></p></td>
+<td><p>Diagram generation (Mermaid, Graphviz)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">db</span></code></p></td>
+<td><p>Database access (SQLAlchemy, PostgreSQL)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">cv</span></code></p></td>
+<td><p>Computer vision (OpenCV, Pillow)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">dsp</span></code></p></td>
+<td><p>Digital signal processing (scipy, tensorpac)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">social</span></code></p></td>
+<td><p>Social media posting (socialia)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">tunnel</span></code></p></td>
+<td><p>SSH tunnel management (scitex-tunnel)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">all</span></code></p></td>
+<td><p>Everything above</p></td>
+</tr>
+</tbody>
+</table>
+<p>Example combinations:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Neuroscience analysis</span>
+pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[plt,stats,dsp,dataset]&quot;</span>
+
+<span class="c1"># Paper writing</span>
+pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[writer,scholar,plt]&quot;</span>
+
+<span class="c1"># AI agent development</span>
+pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[ai,browser,capture]&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="development-install">
+<h2>Development Install<a class="headerlink" href="#development-install" title="Link to this heading"></a></h2>
+<p>Clone the repository and install in editable mode with development tools:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git<span class="w"> </span>clone<span class="w"> </span>https://github.com/ywatanabe1989/scitex-python.git
+<span class="nb">cd</span><span class="w"> </span>scitex-python
+pip<span class="w"> </span>install<span class="w"> </span>-e<span class="w"> </span><span class="s2">&quot;.[dev]&quot;</span>
+</pre></div>
+</div>
+<p>The <code class="docutils literal notranslate"><span class="pre">dev</span></code> extra includes pytest, ruff, mypy, Sphinx, and build tools.</p>
+<section id="using-uv-recommended">
+<h3>Using uv (recommended)<a class="headerlink" href="#using-uv-recommended" title="Link to this heading"></a></h3>
+<p><a class="reference external" href="https://docs.astral.sh/uv/">uv</a> resolves and installs dependencies
+in parallel from a Rust resolver — roughly 10–30× faster than pip on
+<code class="docutils literal notranslate"><span class="pre">scitex[all]</span></code> (3 min vs. 30–90 min). Install it once with
+<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">uv</span></code> (or the standalone shell installer), then prefix
+every install command on this page with <code class="docutils literal notranslate"><span class="pre">uv</span></code>:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>uv<span class="w"> </span>pip<span class="w"> </span>install<span class="w"> </span>-e<span class="w"> </span><span class="s2">&quot;.[dev]&quot;</span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="verifying-the-installation">
+<h2>Verifying the Installation<a class="headerlink" href="#verifying-the-installation" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">stx</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>To check which optional modules are available:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">usage</span><span class="o">.</span><span class="n">list</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="modules/project.html" class="btn btn-neutral float-left" title="project Module (stx.project)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="quickstart.html" class="btn btn-neutral float-right" title="Quick Start" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/ai.html b/src/scitex/_sphinx_html/modules/ai.html
new file mode 100644
index 000000000..6dec49388
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/ai.html
@@ -0,0 +1,760 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>AI Module (stx.ai) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="NN Module (stx.nn)" href="nn.html" />
+    <link rel="prev" title="notebook Module (stx.notebook)" href="notebook.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/ai.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="ai-module-stx-ai">
+<h1>AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)<a class="headerlink" href="#ai-module-stx-ai" title="Link to this heading"></a></h1>
+<p>Machine learning utilities for training, classification, and metrics
+with PyTorch and scikit-learn.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Training utilities</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">scitex.ai</span><span class="w"> </span><span class="kn">import</span> <span class="n">LearningCurveLogger</span><span class="p">,</span> <span class="n">EarlyStopping</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">LearningCurveLogger</span><span class="p">()</span>
+<span class="n">stopper</span> <span class="o">=</span> <span class="n">EarlyStopping</span><span class="p">(</span><span class="n">patience</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">direction</span><span class="o">=</span><span class="s2">&quot;minimize&quot;</span><span class="p">)</span>
+
+<span class="k">for</span> <span class="n">epoch</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
+    <span class="c1"># ... training loop ...</span>
+    <span class="n">logger</span><span class="p">({</span><span class="s2">&quot;loss&quot;</span><span class="p">:</span> <span class="n">loss</span><span class="p">,</span> <span class="s2">&quot;acc&quot;</span><span class="p">:</span> <span class="n">acc</span><span class="p">},</span> <span class="n">step</span><span class="o">=</span><span class="s2">&quot;Training&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">stopper</span><span class="p">(</span><span class="n">val_loss</span><span class="p">,</span> <span class="p">{</span><span class="s2">&quot;model&quot;</span><span class="p">:</span> <span class="n">model_path</span><span class="p">},</span> <span class="n">epoch</span><span class="p">):</span>
+        <span class="k">break</span>
+
+<span class="n">logger</span><span class="o">.</span><span class="n">plot_learning_curves</span><span class="p">(</span><span class="n">spath</span><span class="o">=</span><span class="s2">&quot;curves.png&quot;</span><span class="p">)</span>
+
+<span class="c1"># Classification</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">scitex.ai</span><span class="w"> </span><span class="kn">import</span> <span class="n">ClassificationReporter</span><span class="p">,</span> <span class="n">Classifier</span>
+
+<span class="n">clf</span> <span class="o">=</span> <span class="n">Classifier</span><span class="p">()(</span><span class="s2">&quot;SVC&quot;</span><span class="p">)</span>
+<span class="n">reporter</span> <span class="o">=</span> <span class="n">ClassificationReporter</span><span class="p">(</span><span class="n">output_dir</span><span class="o">=</span><span class="s2">&quot;./results&quot;</span><span class="p">)</span>
+<span class="n">reporter</span><span class="o">.</span><span class="n">calculate_metrics</span><span class="p">(</span><span class="n">y_true</span><span class="p">,</span> <span class="n">y_pred</span><span class="p">,</span> <span class="n">y_proba</span><span class="p">)</span>
+<span class="n">reporter</span><span class="o">.</span><span class="n">save_summary</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="training">
+<h2>Training<a class="headerlink" href="#training" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">LearningCurveLogger</span></code> – Track and visualize training/validation/test metrics across epochs</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">EarlyStopping</span></code> – Monitor validation metrics and stop when improvement plateaus</p></li>
+</ul>
+</section>
+<section id="classification">
+<h2>Classification<a class="headerlink" href="#classification" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">ClassificationReporter</span></code> – Unified reporter for single/multi-task classification (balanced accuracy, MCC, ROC-AUC, confusion matrices)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">Classifier</span></code> – Factory for scikit-learn classifiers (SVC, KNN, Logistic Regression, AdaBoost, …)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">CrossValidationExperiment</span></code> – Cross-validation framework</p></li>
+</ul>
+</section>
+<section id="metrics">
+<h2>Metrics<a class="headerlink" href="#metrics" title="Link to this heading"></a></h2>
+<p>Standardized <code class="docutils literal notranslate"><span class="pre">calc_*</span></code> functions:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_bacc</span></code> – Balanced accuracy</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_mcc</span></code> – Matthews Correlation Coefficient</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_conf_mat</span></code> – Confusion matrix</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_roc_auc</span></code> – ROC-AUC score</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_pre_rec_auc</span></code> – Precision-Recall AUC</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_feature_importance</span></code> – Feature importance scores</p></li>
+</ul>
+</section>
+<section id="visualization">
+<h2>Visualization<a class="headerlink" href="#visualization" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">plot_learning_curve</span></code> – Training/validation curves</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx_conf_mat</span></code> – Confusion matrix heatmap</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">plot_roc_curve</span></code> – ROC curve</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">plot_pre_rec_curve</span></code> – Precision-Recall curve</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">plot_feature_importance</span></code> – Feature importance bar plots</p></li>
+</ul>
+</section>
+<section id="other">
+<h2>Other<a class="headerlink" href="#other" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">MultiTaskLoss</span></code> – Multi-task learning loss weighting</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_optimizer</span></code> / <code class="docutils literal notranslate"><span class="pre">set_optimizer</span></code> – Optimizer management</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">GenAI</span></code> – Generative AI wrapper (lazy-loaded)</p></li>
+<li><p>Clustering: <code class="docutils literal notranslate"><span class="pre">pca</span></code>, <code class="docutils literal notranslate"><span class="pre">umap</span></code></p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.ai.html"><span class="doc">scitex.ai API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="notebook.html" class="btn btn-neutral float-left" title="notebook Module (stx.notebook)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="nn.html" class="btn btn-neutral float-right" title="NN Module (stx.nn)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/app.html b/src/scitex/_sphinx_html/modules/app.html
new file mode 100644
index 000000000..f5c836daf
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/app.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>app Module (stx.app) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="cloud Module (stx.cloud)" href="cloud.html" />
+    <link rel="prev" title="schema Module (stx.schema)" href="schema.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/app.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="app-module-stx-app">
+<h1>app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)<a class="headerlink" href="#app-module-stx-app" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.app</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="schema.html" class="btn btn-neutral float-left" title="schema Module (stx.schema)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="cloud.html" class="btn btn-neutral float-right" title="cloud Module (stx.cloud)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/audio.html b/src/scitex/_sphinx_html/modules/audio.html
new file mode 100644
index 000000000..551fb4cd3
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/audio.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>audio Module (stx.audio) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="notify Module (stx.notify)" href="notify.html" />
+    <link rel="prev" title="capture Module (stx.capture)" href="capture.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
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+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</li>
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+           <div itemprop="articleBody">
+             
+  <section id="audio-module-stx-audio">
+<h1>audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)<a class="headerlink" href="#audio-module-stx-audio" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.audio</span> for the auto-generated Python API.</p>
+</section>
+
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+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+    </div>
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diff --git a/src/scitex/_sphinx_html/modules/audit.html b/src/scitex/_sphinx_html/modules/audit.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/audit.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>audit Module (stx.audit) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="events Module (stx.events)" href="events.html" />
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+</head>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
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+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/audit.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="audit-module-stx-audit">
+<h1>audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)<a class="headerlink" href="#audit-module-stx-audit" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.audit</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="dev.html" class="btn btn-neutral float-left" title="dev Module (stx.dev)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="events.html" class="btn btn-neutral float-right" title="events Module (stx.events)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/benchmark.html b/src/scitex/_sphinx_html/modules/benchmark.html
new file mode 100644
index 000000000..d79cc2003
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/benchmark.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>benchmark Module (stx.benchmark) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="PD Module (stx.pd)" href="pd.html" />
+    <link rel="prev" title="cv Module (stx.cv)" href="cv.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/benchmark.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="benchmark-module-stx-benchmark">
+<h1>benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)<a class="headerlink" href="#benchmark-module-stx-benchmark" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.benchmark</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="cv.html" class="btn btn-neutral float-left" title="cv Module (stx.cv)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="pd.html" class="btn btn-neutral float-right" title="PD Module (stx.pd)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/bridge.html b/src/scitex/_sphinx_html/modules/bridge.html
new file mode 100644
index 000000000..78448f88f
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/bridge.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>bridge Module (stx.bridge) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="compat Module (stx.compat)" href="compat.html" />
+    <link rel="prev" title="tex Module (stx.tex)" href="tex.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
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+<li class="toctree-l2 current"><a class="current reference internal" href="#">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/bridge.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
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+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="bridge-module-stx-bridge">
+<h1>bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)<a class="headerlink" href="#bridge-module-stx-bridge" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.bridge</span> for the auto-generated Python API.</p>
+</section>
+
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+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="tex.html" class="btn btn-neutral float-left" title="tex Module (stx.tex)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="compat.html" class="btn btn-neutral float-right" title="compat Module (stx.compat)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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diff --git a/src/scitex/_sphinx_html/modules/browser.html b/src/scitex/_sphinx_html/modules/browser.html
new file mode 100644
index 000000000..4aa483ffd
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/browser.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>browser Module (stx.browser) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="capture Module (stx.capture)" href="capture.html" />
+    <link rel="prev" title="cli Module (stx.cli)" href="cli.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
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+<p>See <span class="xref std std-doc">/api/scitex.browser</span> for the auto-generated Python API.</p>
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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diff --git a/src/scitex/_sphinx_html/modules/canvas.html b/src/scitex/_sphinx_html/modules/canvas.html
new file mode 100644
index 000000000..5b2a3a317
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/canvas.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>canvas Module (stx.canvas) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
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+      <script src="../_static/jquery.js?v=5d32c60e"></script>
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Scholar Module (stx.scholar)" href="scholar.html" />
+    <link rel="prev" title="Diagram Module (stx.diagram)" href="diagram.html" /> 
+</head>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
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+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/canvas.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="canvas-module-stx-canvas">
+<h1>canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)<a class="headerlink" href="#canvas-module-stx-canvas" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.canvas</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="diagram.html" class="btn btn-neutral float-left" title="Diagram Module (stx.diagram)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="scholar.html" class="btn btn-neutral float-right" title="Scholar Module (stx.scholar)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/capture.html b/src/scitex/_sphinx_html/modules/capture.html
new file mode 100644
index 000000000..dc3e00fc2
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/capture.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>capture Module (stx.capture) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="audio Module (stx.audio)" href="audio.html" />
+    <link rel="prev" title="browser Module (stx.browser)" href="browser.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/capture.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="capture-module-stx-capture">
+<h1>capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)<a class="headerlink" href="#capture-module-stx-capture" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.capture</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="browser.html" class="btn btn-neutral float-left" title="browser Module (stx.browser)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="audio.html" class="btn btn-neutral float-right" title="audio Module (stx.audio)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/clew.html b/src/scitex/_sphinx_html/modules/clew.html
new file mode 100644
index 000000000..2445ffcdb
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/clew.html
@@ -0,0 +1,768 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Clew Module (stx.clew) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Stats Module (stx.stats)" href="stats.html" />
+    <link rel="prev" title="Repro Module (stx.repro)" href="repro.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/clew.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="clew-module-stx-clew">
+<h1>Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)<a class="headerlink" href="#clew-module-stx-clew" title="Link to this heading"></a></h1>
+<p>Hash-based provenance tracking for reproducible science. Clew (Ariadne’s
+thread) records file hashes during <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> runs and traces
+dependency chains back to source.</p>
+<section id="how-it-works">
+<h2>How It Works<a class="headerlink" href="#how-it-works" title="Link to this heading"></a></h2>
+<ol class="arabic simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> starts a tracking session</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.io.load()</span></code> records input file hashes</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.io.save()</span></code> records output file hashes</p></li>
+<li><p>Session close computes a combined hash of all inputs/outputs</p></li>
+<li><p>Later, <code class="docutils literal notranslate"><span class="pre">stx.clew</span></code> can verify nothing has changed</p></li>
+</ol>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Automatic -- just use @stx.session + stx.io</span>
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">():</span>
+    <span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;input.csv&quot;</span><span class="p">)</span>      <span class="c1"># Tracked as input</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">process</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="s2">&quot;output.png&quot;</span><span class="p">)</span>     <span class="c1"># Tracked as output</span>
+    <span class="k">return</span> <span class="mi">0</span>
+
+<span class="c1"># Verify later</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">status</span><span class="p">()</span>                         <span class="c1"># Like git status</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="s2">&quot;session_id&quot;</span><span class="p">)</span>                <span class="c1"># Verify by hash</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="s2">&quot;output.png&quot;</span><span class="p">)</span>              <span class="c1"># Trace to source</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-commands">
+<h2>CLI Commands<a class="headerlink" href="#cli-commands" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>clew<span class="w"> </span>status<span class="w">                  </span><span class="c1"># Show changed files</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>list<span class="w">                    </span><span class="c1"># List all tracked runs</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>run<span class="w"> </span>&lt;session_id&gt;<span class="w">        </span><span class="c1"># Verify a specific run</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>chain<span class="w"> </span>&lt;file&gt;<span class="w">            </span><span class="c1"># Trace dependency chain</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>stats<span class="w">                   </span><span class="c1"># Database statistics</span>
+</pre></div>
+</div>
+</section>
+<section id="verification-levels">
+<h2>Verification Levels<a class="headerlink" href="#verification-levels" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>CACHE</strong> – Hash comparison only (fast). Checks if files match stored hashes.</p></li>
+<li><p><strong>RERUN</strong> – Re-execute scripts and compare outputs (thorough). Catches logic errors.</p></li>
+</ul>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Fast: hash comparison</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="s2">&quot;session_id&quot;</span><span class="p">)</span>
+
+<span class="c1"># Thorough: re-execute and compare</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="s2">&quot;session_id&quot;</span><span class="p">,</span> <span class="n">from_scratch</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="dependency-chains">
+<h2>Dependency Chains<a class="headerlink" href="#dependency-chains" title="Link to this heading"></a></h2>
+<p>Clew traces <code class="docutils literal notranslate"><span class="pre">parent_session</span></code> links to build a DAG from final output
+back to original source:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">chain</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="s2">&quot;final_figure.png&quot;</span><span class="p">)</span>
+<span class="c1"># Shows: source.py → intermediate.csv → analysis.py → final_figure.png</span>
+
+<span class="c1"># Visualize as Mermaid DAG</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">mermaid</span><span class="p">(</span><span class="s2">&quot;session_id&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="verification-statuses">
+<h2>Verification Statuses<a class="headerlink" href="#verification-statuses" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">VERIFIED</span></code> – Files match expected hashes</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">MISMATCH</span></code> – Files differ from stored hashes</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">MISSING</span></code> – Files no longer exist</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">UNKNOWN</span></code> – No prior tracking data</p></li>
+</ul>
+</section>
+<section id="key-functions">
+<h2>Key Functions<a class="headerlink" href="#key-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">status()</span></code> – Show changed items (like <code class="docutils literal notranslate"><span class="pre">git</span> <span class="pre">status</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">run(session_id)</span></code> – Verify a specific run</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">chain(target_file)</span></code> – Trace dependency chain</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">list_runs(limit,</span> <span class="pre">status)</span></code> – List tracked runs</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stats()</span></code> – Database statistics</p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.clew.html"><span class="doc">scitex.clew API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="repro.html" class="btn btn-neutral float-left" title="Repro Module (stx.repro)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="stats.html" class="btn btn-neutral float-right" title="Stats Module (stx.stats)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/cli.html b/src/scitex/_sphinx_html/modules/cli.html
new file mode 100644
index 000000000..d10420179
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/cli.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>cli Module (stx.cli) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="browser Module (stx.browser)" href="browser.html" />
+    <link rel="prev" title="tunnel Module (stx.tunnel)" href="tunnel.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/cli.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="cli-module-stx-cli">
+<h1>cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)<a class="headerlink" href="#cli-module-stx-cli" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.cli</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="tunnel.html" class="btn btn-neutral float-left" title="tunnel Module (stx.tunnel)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="browser.html" class="btn btn-neutral float-right" title="browser Module (stx.browser)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/cloud.html b/src/scitex/_sphinx_html/modules/cloud.html
new file mode 100644
index 000000000..c4bd5d74f
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/cloud.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>cloud Module (stx.cloud) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="container Module (stx.container)" href="container.html" />
+    <link rel="prev" title="app Module (stx.app)" href="app.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
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+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/cloud.rst" class="fa fa-github"> Edit on GitHub</a>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="cloud-module-stx-cloud">
+<h1>cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)<a class="headerlink" href="#cloud-module-stx-cloud" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.cloud</span> for the auto-generated Python API.</p>
+</section>
+
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+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="app.html" class="btn btn-neutral float-left" title="app Module (stx.app)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="container.html" class="btn btn-neutral float-right" title="container Module (stx.container)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
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diff --git a/src/scitex/_sphinx_html/modules/compat.html b/src/scitex/_sphinx_html/modules/compat.html
new file mode 100644
index 000000000..e5b5b5f77
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/compat.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>compat Module (stx.compat) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="module Module (stx.module)" href="module.html" />
+    <link rel="prev" title="bridge Module (stx.bridge)" href="bridge.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
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+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/compat.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="compat-module-stx-compat">
+<h1>compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)<a class="headerlink" href="#compat-module-stx-compat" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.compat</span> for the auto-generated Python API.</p>
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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diff --git a/src/scitex/_sphinx_html/modules/config.html b/src/scitex/_sphinx_html/modules/config.html
new file mode 100644
index 000000000..cfeb85715
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/config.html
@@ -0,0 +1,758 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Config Module (stx.config) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Logging Module (stx.logging)" href="logging.html" />
+    <link rel="prev" title="IO Module (stx.io)" href="io.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+        <div class="wy-side-nav-search" >
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+          <a href="../index.html" class="icon icon-home">
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/config.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="config-module-stx-config">
+<h1>Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)<a class="headerlink" href="#config-module-stx-config" title="Link to this heading"></a></h1>
+<p>YAML-based configuration with priority resolution and path management.</p>
+<section id="priority-resolution">
+<h2>Priority Resolution<a class="headerlink" href="#priority-resolution" title="Link to this heading"></a></h2>
+<p>All config values follow the same precedence:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>direct argument &gt; config/YAML &gt; environment variable &gt; default
+</pre></div>
+</div>
+</section>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Get global config (reads ~/.scitex/config.yaml)</span>
+<span class="n">config</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get_config</span><span class="p">()</span>
+
+<span class="c1"># Resolve with precedence</span>
+<span class="n">log_level</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;logging.level&quot;</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="s2">&quot;INFO&quot;</span><span class="p">)</span>
+<span class="c1"># Checks: direct → YAML → SCITEX_LOGGING_LEVEL env → &quot;INFO&quot;</span>
+
+<span class="c1"># Access nested values</span>
+<span class="n">config</span><span class="o">.</span><span class="n">get_nested</span><span class="p">(</span><span class="s2">&quot;scholar&quot;</span><span class="p">,</span> <span class="s2">&quot;crossref_email&quot;</span><span class="p">)</span>
+
+<span class="c1"># Path management</span>
+<span class="n">paths</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get_paths</span><span class="p">()</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">scholar</span>        <span class="c1"># ~/.scitex/scholar</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">cache</span>          <span class="c1"># ~/.scitex/cache</span>
+</pre></div>
+</div>
+</section>
+<section id="yaml-configuration">
+<h2>YAML Configuration<a class="headerlink" href="#yaml-configuration" title="Link to this heading"></a></h2>
+<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="c1"># ~/.scitex/config.yaml (or ./config/*.yaml for projects)</span>
+<span class="nt">logging</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">level</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">INFO</span>
+
+<span class="nt">scholar</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">crossref_email</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">${CROSSREF_EMAIL:-user@example.com}</span>
+</pre></div>
+</div>
+<p>Environment variable substitution with <code class="docutils literal notranslate"><span class="pre">${VAR:-default}</span></code> syntax is
+supported in YAML files.</p>
+</section>
+<section id="key-classes">
+<h2>Key Classes<a class="headerlink" href="#key-classes" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code> – YAML-based config with env var substitution and precedence resolution</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code> – Dict-based config resolver for programmatic use</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code> – Centralized path manager (all paths derive from <code class="docutils literal notranslate"><span class="pre">~/.scitex/</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">EnvVar</span></code> – Environment variable definition dataclass</p></li>
+</ul>
+</section>
+<section id="path-management">
+<h2>Path Management<a class="headerlink" href="#path-management" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code> manages all SciTeX directories:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">paths</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get_paths</span><span class="p">()</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">base</span>       <span class="c1"># ~/.scitex (SCITEX_DIR)</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">logs</span>       <span class="c1"># ~/.scitex/logs</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">cache</span>      <span class="c1"># ~/.scitex/cache</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">scholar</span>    <span class="c1"># ~/.scitex/scholar</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">rng</span>        <span class="c1"># ~/.scitex/rng</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">capture</span>    <span class="c1"># ~/.scitex/capture</span>
+</pre></div>
+</div>
+</section>
+<section id="utility-functions">
+<h2>Utility Functions<a class="headerlink" href="#utility-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get_config(path)</span></code> – Get singleton ScitexConfig instance</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_paths(base_dir)</span></code> – Get singleton ScitexPaths instance</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">load_yaml(path)</span></code> – Load YAML with env var substitution</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">load_dotenv(path)</span></code> – Load <code class="docutils literal notranslate"><span class="pre">.env</span></code> file</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code> – Get SCITEX_DIR with precedence</p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.config.html"><span class="doc">scitex.config API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
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+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="io.html" class="btn btn-neutral float-left" title="IO Module (stx.io)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="logging.html" class="btn btn-neutral float-right" title="Logging Module (stx.logging)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+  </script> 
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+</html>
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diff --git a/src/scitex/_sphinx_html/modules/container.html b/src/scitex/_sphinx_html/modules/container.html
new file mode 100644
index 000000000..52dda4a58
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/container.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>container Module (stx.container) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="tunnel Module (stx.tunnel)" href="tunnel.html" />
+    <link rel="prev" title="cloud Module (stx.cloud)" href="cloud.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
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+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/container.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="container-module-stx-container">
+<h1>container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)<a class="headerlink" href="#container-module-stx-container" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.container</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="cloud.html" class="btn btn-neutral float-left" title="cloud Module (stx.cloud)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="tunnel.html" class="btn btn-neutral float-right" title="tunnel Module (stx.tunnel)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/context.html b/src/scitex/_sphinx_html/modules/context.html
new file mode 100644
index 000000000..9625abb59
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/context.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>context Module (stx.context) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="resource Module (stx.resource)" href="resource.html" />
+    <link rel="prev" title="rng Module (stx.rng)" href="rng.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
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+          
+          
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+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/context.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="context-module-stx-context">
+<h1>context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)<a class="headerlink" href="#context-module-stx-context" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.context</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="rng.html" class="btn btn-neutral float-left" title="rng Module (stx.rng)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="resource.html" class="btn btn-neutral float-right" title="resource Module (stx.resource)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/cv.html b/src/scitex/_sphinx_html/modules/cv.html
new file mode 100644
index 000000000..49e243330
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/cv.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>cv Module (stx.cv) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="benchmark Module (stx.benchmark)" href="benchmark.html" />
+    <link rel="prev" title="torch Module (stx.torch)" href="torch.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
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+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/cv.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="cv-module-stx-cv">
+<h1>cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)<a class="headerlink" href="#cv-module-stx-cv" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.cv</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="torch.html" class="btn btn-neutral float-left" title="torch Module (stx.torch)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="benchmark.html" class="btn btn-neutral float-right" title="benchmark Module (stx.benchmark)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
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+</body>
+</html>
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diff --git a/src/scitex/_sphinx_html/modules/dataset.html b/src/scitex/_sphinx_html/modules/dataset.html
new file mode 100644
index 000000000..1316e5c59
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/dataset.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>dataset Module (stx.dataset) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="schema Module (stx.schema)" href="schema.html" />
+    <link rel="prev" title="db Module (stx.db)" href="db.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l2 current"><a class="current reference internal" href="#">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
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+
+        </div>
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+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</li>
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+             
+  <section id="dataset-module-stx-dataset">
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+<p>See <span class="xref std std-doc">/api/scitex.dataset</span> for the auto-generated Python API.</p>
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+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+        <a href="schema.html" class="btn btn-neutral float-right" title="schema Module (stx.schema)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
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diff --git a/src/scitex/_sphinx_html/modules/datetime.html b/src/scitex/_sphinx_html/modules/datetime.html
new file mode 100644
index 000000000..ae6d1eac9
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/datetime.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>datetime Module (stx.datetime) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="types Module (stx.types)" href="types.html" />
+    <link rel="prev" title="linalg Module (stx.linalg)" href="linalg.html" /> 
+</head>
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+    <input type="hidden" name="check_keywords" value="yes" />
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/datetime.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="datetime-module-stx-datetime">
+<h1>datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)<a class="headerlink" href="#datetime-module-stx-datetime" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.datetime</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="linalg.html" class="btn btn-neutral float-left" title="linalg Module (stx.linalg)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="types.html" class="btn btn-neutral float-right" title="types Module (stx.types)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/db.html b/src/scitex/_sphinx_html/modules/db.html
new file mode 100644
index 000000000..141ae2050
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/db.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>db Module (stx.db) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="dataset Module (stx.dataset)" href="dataset.html" />
+    <link rel="prev" title="PD Module (stx.pd)" href="pd.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
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+          
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+          <a href="../index.html" class="icon icon-home">
+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/db.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="db-module-stx-db">
+<h1>db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)<a class="headerlink" href="#db-module-stx-db" title="Link to this heading"></a></h1>
+<p>See <a class="reference internal" href="../api/scitex.db.html"><span class="doc">scitex.db API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="pd.html" class="btn btn-neutral float-left" title="PD Module (stx.pd)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="dataset.html" class="btn btn-neutral float-right" title="dataset Module (stx.dataset)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+      jQuery(function () {
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diff --git a/src/scitex/_sphinx_html/modules/decorators.html b/src/scitex/_sphinx_html/modules/decorators.html
new file mode 100644
index 000000000..59cea2278
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/decorators.html
@@ -0,0 +1,756 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Decorators Module (stx.decorators) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Introspect Module (stx.introspect)" href="introspect.html" />
+    <link rel="prev" title="Template Module (stx.template)" href="template.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/decorators.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="decorators-module-stx-decorators">
+<h1>Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)<a class="headerlink" href="#decorators-module-stx-decorators" title="Link to this heading"></a></h1>
+<p>Function decorators for type conversion, batching, caching, and more.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.decorators</span><span class="w"> </span><span class="kn">import</span> <span class="n">torch_fn</span><span class="p">,</span> <span class="n">batch_fn</span><span class="p">,</span> <span class="n">cache_disk</span><span class="p">,</span> <span class="n">timeout</span>
+
+<span class="nd">@torch_fn</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">process</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Auto-converts inputs to torch tensors, outputs back.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">x</span> <span class="o">*</span> <span class="mi">2</span>
+
+<span class="nd">@batch_fn</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">predict</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">batch_size</span><span class="o">=</span><span class="mi">32</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Process data in batches with progress bar.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">model</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+
+<span class="nd">@cache_disk</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">expensive_computation</span><span class="p">(</span><span class="n">params</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Results cached to disk for reuse.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">heavy_compute</span><span class="p">(</span><span class="n">params</span><span class="p">)</span>
+
+<span class="nd">@timeout</span><span class="p">(</span><span class="n">seconds</span><span class="o">=</span><span class="mi">30</span><span class="p">)</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">risky_call</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raises TimeoutError if exceeds 30s.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">external_api</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="type-conversion">
+<h2>Type Conversion<a class="headerlink" href="#type-conversion" title="Link to this heading"></a></h2>
+<p>Auto-convert between data frameworks:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;torch_fn</span></code> – Inputs to PyTorch tensors, outputs back to original type</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;numpy_fn</span></code> – Inputs to NumPy arrays</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;pandas_fn</span></code> – Inputs to pandas objects</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;xarray_fn</span></code> – Inputs to xarray objects</p></li>
+</ul>
+</section>
+<section id="batch-processing">
+<h2>Batch Processing<a class="headerlink" href="#batch-processing" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;batch_fn</span></code> – Split input into batches with tqdm progress</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;batch_numpy_fn</span></code> – NumPy conversion + batching</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;batch_torch_fn</span></code> – PyTorch conversion + batching</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;batch_pandas_fn</span></code> – Pandas conversion + batching</p></li>
+</ul>
+</section>
+<section id="caching">
+<h2>Caching<a class="headerlink" href="#caching" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;cache_mem</span></code> – In-memory function result caching</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;cache_disk</span></code> – Persistent disk-based caching</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;cache_disk_async</span></code> – Async disk caching</p></li>
+</ul>
+</section>
+<section id="utilities">
+<h2>Utilities<a class="headerlink" href="#utilities" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;deprecated(reason,</span> <span class="pre">forward_to)</span></code> – Mark functions as deprecated</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;not_implemented</span></code> – Mark as not yet implemented</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;timeout(seconds)</span></code> – Enforce execution time limits</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;preserve_doc</span></code> – Preserve docstrings when wrapping</p></li>
+</ul>
+</section>
+<section id="auto-ordering">
+<h2>Auto-Ordering<a class="headerlink" href="#auto-ordering" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.decorators</span><span class="w"> </span><span class="kn">import</span> <span class="n">enable_auto_order</span>
+
+<span class="n">enable_auto_order</span><span class="p">()</span>
+<span class="c1"># Now decorators are applied in optimal order regardless of code order</span>
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.decorators.html"><span class="doc">scitex.decorators API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="template.html" class="btn btn-neutral float-left" title="Template Module (stx.template)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="introspect.html" class="btn btn-neutral float-right" title="Introspect Module (stx.introspect)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
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+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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+</html>
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diff --git a/src/scitex/_sphinx_html/modules/dev.html b/src/scitex/_sphinx_html/modules/dev.html
new file mode 100644
index 000000000..c60783aa5
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/dev.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>dev Module (stx.dev) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="audit Module (stx.audit)" href="audit.html" />
+    <link rel="prev" title="ui Module (stx.ui)" href="ui.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+          
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+            SciTeX
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/dev.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="dev-module-stx-dev">
+<h1>dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)<a class="headerlink" href="#dev-module-stx-dev" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.dev</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="ui.html" class="btn btn-neutral float-left" title="ui Module (stx.ui)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="audit.html" class="btn btn-neutral float-right" title="audit Module (stx.audit)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/diagram.html b/src/scitex/_sphinx_html/modules/diagram.html
new file mode 100644
index 000000000..dde45cf27
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/diagram.html
@@ -0,0 +1,775 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Diagram Module (stx.diagram) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="canvas Module (stx.canvas)" href="canvas.html" />
+    <link rel="prev" title="DSP Module (stx.dsp)" href="dsp.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/diagram.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="diagram-module-stx-diagram">
+<h1>Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)<a class="headerlink" href="#diagram-module-stx-diagram" title="Link to this heading"></a></h1>
+<p>Paper-optimized diagram generation with Mermaid and Graphviz backends.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.diagram</span><span class="w"> </span><span class="kn">import</span> <span class="n">Diagram</span>
+
+<span class="c1"># Create from Python</span>
+<span class="n">d</span> <span class="o">=</span> <span class="n">Diagram</span><span class="p">(</span><span class="nb">type</span><span class="o">=</span><span class="s2">&quot;workflow&quot;</span><span class="p">,</span> <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Analysis Pipeline&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="s2">&quot;load&quot;</span><span class="p">,</span> <span class="s2">&quot;Load Data&quot;</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="s2">&quot;stadium&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="s2">&quot;proc&quot;</span><span class="p">,</span> <span class="s2">&quot;Process&quot;</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="s2">&quot;rounded&quot;</span><span class="p">,</span> <span class="n">emphasis</span><span class="o">=</span><span class="s2">&quot;primary&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="s2">&quot;save&quot;</span><span class="p">,</span> <span class="s2">&quot;Save Results&quot;</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="s2">&quot;stadium&quot;</span><span class="p">,</span> <span class="n">emphasis</span><span class="o">=</span><span class="s2">&quot;success&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="s2">&quot;load&quot;</span><span class="p">,</span> <span class="s2">&quot;proc&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="s2">&quot;proc&quot;</span><span class="p">,</span> <span class="s2">&quot;save&quot;</span><span class="p">)</span>
+
+<span class="c1"># Export</span>
+<span class="n">d</span><span class="o">.</span><span class="n">to_mermaid</span><span class="p">(</span><span class="s2">&quot;pipeline.mmd&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">to_graphviz</span><span class="p">(</span><span class="s2">&quot;pipeline.dot&quot;</span><span class="p">)</span>
+
+<span class="c1"># Or from YAML specification</span>
+<span class="n">d</span> <span class="o">=</span> <span class="n">Diagram</span><span class="o">.</span><span class="n">from_yaml</span><span class="p">(</span><span class="s2">&quot;pipeline.diagram.yaml&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="yaml-specification">
+<h2>YAML Specification<a class="headerlink" href="#yaml-specification" title="Link to this heading"></a></h2>
+<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="nt">type</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">workflow</span>
+<span class="nt">title</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">SciTeX Analysis Pipeline</span>
+
+<span class="nt">paper</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">column</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">single</span><span class="w">          </span><span class="c1"># single or double</span>
+<span class="w">  </span><span class="nt">mode</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">publication</span><span class="w">       </span><span class="c1"># draft or publication</span>
+<span class="w">  </span><span class="nt">reading_direction</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">left_to_right</span>
+
+<span class="nt">layout</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">groups</span><span class="p">:</span>
+<span class="w">    </span><span class="nt">Input</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">[</span><span class="nv">load</span><span class="p p-Indicator">,</span><span class="w"> </span><span class="nv">preprocess</span><span class="p p-Indicator">]</span>
+<span class="w">    </span><span class="nt">Analysis</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">[</span><span class="nv">analyze</span><span class="p p-Indicator">,</span><span class="w"> </span><span class="nv">test</span><span class="p p-Indicator">]</span>
+
+<span class="nt">nodes</span><span class="p">:</span>
+<span class="w">  </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="nt">id</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">load</span>
+<span class="w">    </span><span class="nt">label</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">Load Data</span>
+<span class="w">    </span><span class="nt">shape</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">stadium</span>
+<span class="w">  </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="nt">id</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">analyze</span>
+<span class="w">    </span><span class="nt">label</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">Statistical Test</span>
+<span class="w">    </span><span class="nt">shape</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">rounded</span>
+<span class="w">    </span><span class="nt">emphasis</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">primary</span>
+
+<span class="nt">edges</span><span class="p">:</span>
+<span class="w">  </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="nt">from</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">load</span>
+<span class="w">    </span><span class="nt">to</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">analyze</span>
+</pre></div>
+</div>
+</section>
+<section id="node-shapes">
+<h2>Node Shapes<a class="headerlink" href="#node-shapes" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">box</span></code>, <code class="docutils literal notranslate"><span class="pre">rounded</span></code>, <code class="docutils literal notranslate"><span class="pre">stadium</span></code>, <code class="docutils literal notranslate"><span class="pre">diamond</span></code>, <code class="docutils literal notranslate"><span class="pre">circle</span></code>, <code class="docutils literal notranslate"><span class="pre">codeblock</span></code></p>
+</section>
+<section id="node-emphasis">
+<h2>Node Emphasis<a class="headerlink" href="#node-emphasis" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">normal</span></code> – Default (dark)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">primary</span></code> – Key nodes (blue)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">success</span></code> – Positive outcomes (green)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">warning</span></code> – Issues (red)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">muted</span></code> – Secondary (gray)</p></li>
+</ul>
+</section>
+<section id="diagram-types">
+<h2>Diagram Types<a class="headerlink" href="#diagram-types" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">workflow</span></code> – Left-to-right sequential processes</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">decision</span></code> – Top-to-bottom decision trees</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pipeline</span></code> – Data pipeline stages</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">hierarchy</span></code> – Tree structures</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">comparison</span></code> – Side-by-side comparison</p></li>
+</ul>
+</section>
+<section id="paper-modes">
+<h2>Paper Modes<a class="headerlink" href="#paper-modes" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>draft</strong> – Full arrows, medium spacing, all edges visible</p></li>
+<li><p><strong>publication</strong> – Tight spacing, return edges invisible, optimized for column width</p></li>
+</ul>
+</section>
+<section id="backends">
+<h2>Backends<a class="headerlink" href="#backends" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>Mermaid</strong> (<code class="docutils literal notranslate"><span class="pre">.mmd</span></code>) – Web/markdown rendering</p></li>
+<li><p><strong>Graphviz DOT</strong> (<code class="docutils literal notranslate"><span class="pre">.dot</span></code>) – Tighter layouts, render with <code class="docutils literal notranslate"><span class="pre">dot</span> <span class="pre">-Tpng</span></code></p></li>
+<li><p><strong>YAML</strong> (<code class="docutils literal notranslate"><span class="pre">.diagram.yaml</span></code>) – Semantic spec, human/LLM-readable</p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.diagram.html"><span class="doc">scitex.diagram API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="dsp.html" class="btn btn-neutral float-left" title="DSP Module (stx.dsp)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="canvas.html" class="btn btn-neutral float-right" title="canvas Module (stx.canvas)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/dict.html b/src/scitex/_sphinx_html/modules/dict.html
new file mode 100644
index 000000000..169999324
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/dict.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>dict Module (stx.dict) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="path Module (stx.path)" href="path.html" />
+    <link rel="prev" title="str Module (stx.str)" href="str.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/dict.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="dict-module-stx-dict">
+<h1>dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)<a class="headerlink" href="#dict-module-stx-dict" title="Link to this heading"></a></h1>
+<p>See <a class="reference internal" href="../api/scitex.dict.html"><span class="doc">scitex.dict API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="str.html" class="btn btn-neutral float-left" title="str Module (stx.str)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="path.html" class="btn btn-neutral float-right" title="path Module (stx.path)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/dsp.html b/src/scitex/_sphinx_html/modules/dsp.html
new file mode 100644
index 000000000..1adfda81d
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/dsp.html
@@ -0,0 +1,749 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>DSP Module (stx.dsp) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Diagram Module (stx.diagram)" href="diagram.html" />
+    <link rel="prev" title="PLT Module (stx.plt)" href="plt.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
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+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/dsp.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="dsp-module-stx-dsp">
+<h1>DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)<a class="headerlink" href="#dsp-module-stx-dsp" title="Link to this heading"></a></h1>
+<p>Digital signal processing tools for filtering, spectral analysis,
+and time-frequency decomposition.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="c1"># Generate test signal</span>
+<span class="n">fs</span> <span class="o">=</span> <span class="mi">1000</span>  <span class="c1"># Hz</span>
+<span class="n">t</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="o">/</span><span class="n">fs</span><span class="p">)</span>
+<span class="n">signal</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="mi">10</span> <span class="o">*</span> <span class="n">t</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="mi">50</span> <span class="o">*</span> <span class="n">t</span><span class="p">)</span>
+
+<span class="c1"># Filtering</span>
+<span class="n">filtered</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">filt</span><span class="o">.</span><span class="n">bandpass</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">low</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">high</span><span class="o">=</span><span class="mi">30</span><span class="p">)</span>
+<span class="n">low_pass</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">filt</span><span class="o">.</span><span class="n">lowpass</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">cutoff</span><span class="o">=</span><span class="mi">20</span><span class="p">)</span>
+<span class="n">high_pass</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">filt</span><span class="o">.</span><span class="n">highpass</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">cutoff</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+
+<span class="c1"># Power spectral density</span>
+<span class="n">freqs</span><span class="p">,</span> <span class="n">psd</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">psd</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">)</span>
+
+<span class="c1"># Band powers</span>
+<span class="n">powers</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">band_powers</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">bands</span><span class="o">=</span><span class="p">{</span>
+    <span class="s2">&quot;delta&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">),</span>
+    <span class="s2">&quot;theta&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">4</span><span class="p">,</span> <span class="mi">8</span><span class="p">),</span>
+    <span class="s2">&quot;alpha&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">13</span><span class="p">),</span>
+    <span class="s2">&quot;beta&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">13</span><span class="p">,</span> <span class="mi">30</span><span class="p">),</span>
+<span class="p">})</span>
+
+<span class="c1"># Hilbert transform (analytic signal)</span>
+<span class="n">analytic</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">hilbert</span><span class="p">(</span><span class="n">signal</span><span class="p">)</span>
+<span class="n">amplitude</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">analytic</span><span class="p">)</span>
+<span class="n">phase</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">angle</span><span class="p">(</span><span class="n">analytic</span><span class="p">)</span>
+
+<span class="c1"># Wavelet decomposition</span>
+<span class="n">coeffs</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">wavelet</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">freqs</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">50</span><span class="p">))</span>
+</pre></div>
+</div>
+</section>
+<section id="available-functions">
+<h2>Available Functions<a class="headerlink" href="#available-functions" title="Link to this heading"></a></h2>
+<p><strong>Filtering</strong> (<code class="docutils literal notranslate"><span class="pre">stx.dsp.filt</span></code>)</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">bandpass(signal,</span> <span class="pre">fs,</span> <span class="pre">low,</span> <span class="pre">high)</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">lowpass(signal,</span> <span class="pre">fs,</span> <span class="pre">cutoff)</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">highpass(signal,</span> <span class="pre">fs,</span> <span class="pre">cutoff)</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">notch(signal,</span> <span class="pre">fs,</span> <span class="pre">freq)</span></code></p></li>
+</ul>
+<p><strong>Spectral Analysis</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">psd(signal,</span> <span class="pre">fs)</span></code> – Power spectral density</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">band_powers(signal,</span> <span class="pre">fs,</span> <span class="pre">bands)</span></code> – Power in frequency bands</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">wavelet(signal,</span> <span class="pre">fs,</span> <span class="pre">freqs)</span></code> – Continuous wavelet transform</p></li>
+</ul>
+<p><strong>Time-Frequency</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">hilbert(signal)</span></code> – Analytic signal via Hilbert transform</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pac(signal,</span> <span class="pre">fs)</span></code> – Phase-amplitude coupling</p></li>
+</ul>
+<p><strong>Utilities</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">demo_sig(fs,</span> <span class="pre">duration)</span></code> – Generate demo signals for testing</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">crop(signal,</span> <span class="pre">start,</span> <span class="pre">end,</span> <span class="pre">fs)</span></code> – Crop signal to time range</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">detect_ripples(signal,</span> <span class="pre">fs)</span></code> – Detect sharp-wave ripples</p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.dsp.html"><span class="doc">scitex.dsp API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="plt.html" class="btn btn-neutral float-left" title="PLT Module (stx.plt)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/modules/etc.html b/src/scitex/_sphinx_html/modules/etc.html
new file mode 100644
index 000000000..dc4786908
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/etc.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>etc Module (stx.etc) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
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+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="web Module (stx.web)" href="web.html" />
+    <link rel="prev" title="utils Module (stx.utils)" href="utils.html" /> 
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/etc.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="etc-module-stx-etc">
+<h1>etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)<a class="headerlink" href="#etc-module-stx-etc" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.etc</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="utils.html" class="btn btn-neutral float-left" title="utils Module (stx.utils)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="web.html" class="btn btn-neutral float-right" title="web Module (stx.web)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/events.html b/src/scitex/_sphinx_html/modules/events.html
new file mode 100644
index 000000000..e556affd7
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/events.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>events Module (stx.events) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="project Module (stx.project)" href="project.html" />
+    <link rel="prev" title="audit Module (stx.audit)" href="audit.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
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+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/events.rst" class="fa fa-github"> Edit on GitHub</a>
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+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="events-module-stx-events">
+<h1>events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)<a class="headerlink" href="#events-module-stx-events" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.events</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="audit.html" class="btn btn-neutral float-left" title="audit Module (stx.audit)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="project.html" class="btn btn-neutral float-right" title="project Module (stx.project)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+      jQuery(function () {
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diff --git a/src/scitex/_sphinx_html/modules/gen.html b/src/scitex/_sphinx_html/modules/gen.html
new file mode 100644
index 000000000..41552d4e1
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/gen.html
@@ -0,0 +1,711 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Gen Module (stx.gen) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Template Module (stx.template)" href="template.html" />
+    <link rel="prev" title="social Module (stx.social)" href="social.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
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+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/gen.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="gen-module-stx-gen">
+<h1>Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)<a class="headerlink" href="#gen-module-stx-gen" title="Link to this heading"></a></h1>
+<p>General utilities for path management, shell commands, and system operations.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>Session management has moved to <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> (see <a class="reference internal" href="../core_concepts.html"><span class="doc">Core Concepts</span></a>).
+The <code class="docutils literal notranslate"><span class="pre">scitex.gen.start()</span></code> / <code class="docutils literal notranslate"><span class="pre">scitex.gen.close()</span></code> pattern is deprecated.</p>
+</div>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Timestamped output directories</span>
+<span class="n">path</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">mk_spath</span><span class="p">(</span><span class="s2">&quot;./results&quot;</span><span class="p">)</span>
+<span class="c1"># → ./results/20260213_143022/</span>
+
+<span class="c1"># Run shell commands</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="s2">&quot;ls -la&quot;</span><span class="p">)</span>
+
+<span class="c1"># Clipboard operations</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="s2">&quot;text to clipboard&quot;</span><span class="p">)</span>
+<span class="n">text</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">paste</span><span class="p">()</span>
+
+<span class="c1"># String to valid path</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">title2path</span><span class="p">(</span><span class="s2">&quot;My Experiment #1&quot;</span><span class="p">)</span>
+<span class="c1"># → &quot;my_experiment_1&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.gen.html"><span class="doc">scitex.gen API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="social.html" class="btn btn-neutral float-left" title="social Module (stx.social)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="template.html" class="btn btn-neutral float-right" title="Template Module (stx.template)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/gists.html b/src/scitex/_sphinx_html/modules/gists.html
new file mode 100644
index 000000000..82fd01e55
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/gists.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>gists Module (stx.gists) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="media Module (stx.media)" href="media.html" />
+    <link rel="prev" title="module Module (stx.module)" href="module.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/gists.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="gists-module-stx-gists">
+<h1>gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)<a class="headerlink" href="#gists-module-stx-gists" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.gists</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="module.html" class="btn btn-neutral float-left" title="module Module (stx.module)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="media.html" class="btn btn-neutral float-right" title="media Module (stx.media)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/git.html b/src/scitex/_sphinx_html/modules/git.html
new file mode 100644
index 000000000..9a066bca7
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/git.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>git Module (stx.git) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l2 current"><a class="current reference internal" href="#">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/git.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="git-module-stx-git">
+<h1>git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)<a class="headerlink" href="#git-module-stx-git" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.git</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="sh.html" class="btn btn-neutral float-left" title="sh Module (stx.sh)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="parallel.html" class="btn btn-neutral float-right" title="parallel Module (stx.parallel)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/index.html b/src/scitex/_sphinx_html/modules/index.html
new file mode 100644
index 000000000..27283cf3c
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/index.html
@@ -0,0 +1,946 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Module Overview &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Session Decorator (@stx.session)" href="session.html" />
+    <link rel="prev" title="SciTeX – Modular Python Toolkit for Researchers and AI Agents" href="../index.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Module Overview</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/index.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-overview">
+<h1>Module Overview<a class="headerlink" href="#module-overview" title="Link to this heading"></a></h1>
+<p>SciTeX is organized into focused modules.
+All modules are accessible via <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex</span> <span class="pre">as</span> <span class="pre">stx</span></code> followed by <code class="docutils literal notranslate"><span class="pre">stx.&lt;module&gt;</span></code>.</p>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Core</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Science &amp; Analysis</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Literature &amp; Writing</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Machine Learning</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Data &amp; I/O</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Infrastructure</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Utilities</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Other</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</div>
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+        <a href="../index.html" class="btn btn-neutral float-left" title="SciTeX – Modular Python Toolkit for Researchers and AI Agents" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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diff --git a/src/scitex/_sphinx_html/modules/introspect.html b/src/scitex/_sphinx_html/modules/introspect.html
new file mode 100644
index 000000000..a7c86382a
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/introspect.html
@@ -0,0 +1,746 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Introspect Module (stx.introspect) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
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+      <script src="../_static/jquery.js?v=5d32c60e"></script>
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+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="str Module (stx.str)" href="str.html" />
+    <link rel="prev" title="Decorators Module (stx.decorators)" href="decorators.html" /> 
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/introspect.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="introspect-module-stx-introspect">
+<h1>Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)<a class="headerlink" href="#introspect-module-stx-introspect" title="Link to this heading"></a></h1>
+<p>IPython-like code inspection for exploring Python packages.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Function signature (like IPython&#39;s func?)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">q</span><span class="p">(</span><span class="s2">&quot;scitex.stats.test_ttest_ind&quot;</span><span class="p">)</span>
+<span class="c1"># → name, signature, parameters, return type</span>
+
+<span class="c1"># Full source code (like IPython&#39;s func??)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">qq</span><span class="p">(</span><span class="s2">&quot;scitex.stats.test_ttest_ind&quot;</span><span class="p">)</span>
+<span class="c1"># → complete source with line numbers</span>
+
+<span class="c1"># List module members (like enhanced dir())</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">dir</span><span class="p">(</span><span class="s2">&quot;scitex.plt&quot;</span><span class="p">,</span> <span class="nb">filter</span><span class="o">=</span><span class="s2">&quot;public&quot;</span><span class="p">,</span> <span class="n">kind</span><span class="o">=</span><span class="s2">&quot;functions&quot;</span><span class="p">)</span>
+
+<span class="c1"># Recursive API tree</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">list_api</span><span class="p">(</span><span class="s2">&quot;scitex&quot;</span><span class="p">,</span> <span class="n">max_depth</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="ipython-style-shortcuts">
+<h2>IPython-Style Shortcuts<a class="headerlink" href="#ipython-style-shortcuts" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">q(dotted_path)</span></code> – Signature and parameters (like <code class="docutils literal notranslate"><span class="pre">func?</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">qq(dotted_path)</span></code> – Full source code (like <code class="docutils literal notranslate"><span class="pre">func??</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">dir(dotted_path,</span> <span class="pre">filter,</span> <span class="pre">kind)</span></code> – List members with filtering</p></li>
+</ul>
+<p>Filters: <code class="docutils literal notranslate"><span class="pre">&quot;public&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;private&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;dunder&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;all&quot;</span></code></p>
+<p>Kinds: <code class="docutils literal notranslate"><span class="pre">&quot;functions&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;classes&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;data&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;modules&quot;</span></code></p>
+</section>
+<section id="documentation">
+<h2>Documentation<a class="headerlink" href="#documentation" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get_docstring(path,</span> <span class="pre">format)</span></code> – Extract docstrings (<code class="docutils literal notranslate"><span class="pre">&quot;raw&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;parsed&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;summary&quot;</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_exports(path)</span></code> – Get <code class="docutils literal notranslate"><span class="pre">__all__</span></code> exports</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">find_examples(path)</span></code> – Find usage examples in tests/examples</p></li>
+</ul>
+</section>
+<section id="type-analysis">
+<h2>Type Analysis<a class="headerlink" href="#type-analysis" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get_type_hints_detailed(path)</span></code> – Full type annotation analysis</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_class_hierarchy(path)</span></code> – Inheritance tree (MRO + subclasses)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_class_annotations(path)</span></code> – Class variable annotations</p></li>
+</ul>
+</section>
+<section id="code-analysis">
+<h2>Code Analysis<a class="headerlink" href="#code-analysis" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get_imports(path,</span> <span class="pre">categorize)</span></code> – All imports (AST-based, grouped by stdlib/third-party/local)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_dependencies(path,</span> <span class="pre">recursive)</span></code> – Module dependency tree</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_call_graph(path,</span> <span class="pre">max_depth)</span></code> – Function call graph (with timeout protection)</p></li>
+</ul>
+</section>
+<section id="api-tree">
+<h2>API Tree<a class="headerlink" href="#api-tree" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Generate full module tree as DataFrame</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">list_api</span><span class="p">(</span><span class="s2">&quot;scitex&quot;</span><span class="p">,</span> <span class="n">max_depth</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span> <span class="n">docstring</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.introspect.html"><span class="doc">scitex.introspect API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="decorators.html" class="btn btn-neutral float-left" title="Decorators Module (stx.decorators)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="str.html" class="btn btn-neutral float-right" title="str Module (stx.str)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
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diff --git a/src/scitex/_sphinx_html/modules/io.html b/src/scitex/_sphinx_html/modules/io.html
new file mode 100644
index 000000000..ad3e91ca9
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/io.html
@@ -0,0 +1,803 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>IO Module (stx.io) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Config Module (stx.config)" href="config.html" />
+    <link rel="prev" title="Session Decorator (@stx.session)" href="session.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/io.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="io-module-stx-io">
+<h1>IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)<a class="headerlink" href="#io-module-stx-io" title="Link to this heading"></a></h1>
+<p>Universal file I/O through <code class="docutils literal notranslate"><span class="pre">stx.io.save()</span></code> and <code class="docutils literal notranslate"><span class="pre">stx.io.load()</span></code>.
+Format is determined by file extension.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Save</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;output.csv&quot;</span><span class="p">)</span>       <span class="c1"># DataFrame → CSV</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="s2">&quot;output.npy&quot;</span><span class="p">)</span>        <span class="c1"># ndarray → NumPy</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;output.png&quot;</span><span class="p">)</span>        <span class="c1"># Figure → PNG + CSV + YAML recipe</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s2">&quot;output.pkl&quot;</span><span class="p">)</span>        <span class="c1"># any object → pickle</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="s2">&quot;output.yaml&quot;</span><span class="p">)</span>         <span class="c1"># dict → YAML</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="s2">&quot;output.json&quot;</span><span class="p">)</span>         <span class="c1"># dict → JSON</span>
+
+<span class="c1"># Load</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;input.csv&quot;</span><span class="p">)</span>       <span class="c1"># → DataFrame</span>
+<span class="n">arr</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;input.npy&quot;</span><span class="p">)</span>        <span class="c1"># → ndarray</span>
+<span class="n">obj</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;input.pkl&quot;</span><span class="p">)</span>        <span class="c1"># → original object</span>
+<span class="n">d</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;input.yaml&quot;</span><span class="p">)</span>         <span class="c1"># → dict</span>
+</pre></div>
+</div>
+</section>
+<section id="supported-formats">
+<h2>Supported Formats<a class="headerlink" href="#supported-formats" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Extension</p></th>
+<th class="head"><p>Save Type</p></th>
+<th class="head"><p>Load Return</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.csv</span></code></p></td>
+<td><p>DataFrame, dict, ndarray</p></td>
+<td><p>DataFrame</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.npy</span></code></p></td>
+<td><p>ndarray</p></td>
+<td><p>ndarray</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.npz</span></code></p></td>
+<td><p>dict of ndarrays</p></td>
+<td><p>NpzFile</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.pkl</span></code> / <code class="docutils literal notranslate"><span class="pre">.pickle</span></code></p></td>
+<td><p>any Python object</p></td>
+<td><p>original object</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.yaml</span></code> / <code class="docutils literal notranslate"><span class="pre">.yml</span></code></p></td>
+<td><p>dict</p></td>
+<td><p>dict</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.json</span></code></p></td>
+<td><p>dict, list</p></td>
+<td><p>dict or list</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.png</span></code> / <code class="docutils literal notranslate"><span class="pre">.jpg</span></code> / <code class="docutils literal notranslate"><span class="pre">.svg</span></code> / <code class="docutils literal notranslate"><span class="pre">.pdf</span></code> / <code class="docutils literal notranslate"><span class="pre">.tiff</span></code></p></td>
+<td><p>matplotlib Figure</p></td>
+<td><p>ndarray (image) or Figure</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.hdf5</span></code> / <code class="docutils literal notranslate"><span class="pre">.h5</span></code></p></td>
+<td><p>dict, ndarray</p></td>
+<td><p>dict or ndarray</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.mat</span></code></p></td>
+<td><p>dict</p></td>
+<td><p>dict</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.pth</span></code> / <code class="docutils literal notranslate"><span class="pre">.pt</span></code></p></td>
+<td><p>PyTorch state_dict</p></td>
+<td><p>dict</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">.parquet</span></code></p></td>
+<td><p>DataFrame</p></td>
+<td><p>DataFrame</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">.txt</span></code></p></td>
+<td><p>str</p></td>
+<td><p>str</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="figure-saving">
+<h2>Figure Saving<a class="headerlink" href="#figure-saving" title="Link to this heading"></a></h2>
+<p>When saving a matplotlib Figure, <code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code> automatically:</p>
+<ol class="arabic simple">
+<li><p>Saves the image file (<code class="docutils literal notranslate"><span class="pre">.png</span></code>, <code class="docutils literal notranslate"><span class="pre">.svg</span></code>, etc.)</p></li>
+<li><p>Exports a <code class="docutils literal notranslate"><span class="pre">.csv</span></code> with the plotted data extracted from axes</p></li>
+<li><p>Exports a <code class="docutils literal notranslate"><span class="pre">.yaml</span></code> recipe for reproducing the figure</p></li>
+</ol>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s2">&quot;signal&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;results/plot.png&quot;</span><span class="p">)</span>
+<span class="c1"># Creates:</span>
+<span class="c1">#   results/plot.png       (the figure)</span>
+<span class="c1">#   results/plot.csv       (x, y data)</span>
+<span class="c1">#   results/plot.yaml      (recipe for stx.plt.reproduce)</span>
+</pre></div>
+</div>
+</section>
+<section id="provenance-tracking">
+<h2>Provenance Tracking<a class="headerlink" href="#provenance-tracking" title="Link to this heading"></a></h2>
+<p>Inside <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>, every <code class="docutils literal notranslate"><span class="pre">save</span></code> and <code class="docutils literal notranslate"><span class="pre">load</span></code> records file hashes
+to a local SQLite database for reproducibility verification.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">logger</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span> <span class="o">**</span><span class="n">kw</span><span class="p">):</span>
+    <span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;input.csv&quot;</span><span class="p">)</span>    <span class="c1"># hash recorded as input</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="s2">&quot;output.csv&quot;</span><span class="p">)</span>   <span class="c1"># hash recorded as output</span>
+</pre></div>
+</div>
+</section>
+<section id="other-functions">
+<h2>Other Functions<a class="headerlink" href="#other-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.io.glob(pattern)</span></code> – Find files matching a glob pattern</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.io.load_configs(config_dir)</span></code> – Load and merge YAML config files</p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.io.html"><span class="doc">scitex.io API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="session.html" class="btn btn-neutral float-left" title="Session Decorator (@stx.session)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="config.html" class="btn btn-neutral float-right" title="Config Module (stx.config)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
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+</html>
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--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/linalg.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/linalg.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="linalg-module-stx-linalg">
+<h1>linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)<a class="headerlink" href="#linalg-module-stx-linalg" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.linalg</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="parallel.html" class="btn btn-neutral float-left" title="parallel Module (stx.parallel)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="datetime.html" class="btn btn-neutral float-right" title="datetime Module (stx.datetime)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/linter.html b/src/scitex/_sphinx_html/modules/linter.html
new file mode 100644
index 000000000..3d8eb940e
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/linter.html
@@ -0,0 +1,802 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Linter Module (stx.linter) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Linter Module (<code class="docutils literal notranslate"><span class="pre">stx.linter</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/linter.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="linter-module-stx-linter">
+<h1>Linter Module (<code class="docutils literal notranslate"><span class="pre">stx.linter</span></code>)<a class="headerlink" href="#linter-module-stx-linter" title="Link to this heading"></a></h1>
+<p>AST-based Python linter enforcing SciTeX conventions for reproducible
+scientific code.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">stx.linter</span></code> wraps the standalone
+<a class="reference external" href="https://github.com/ywatanabe1989/scitex-linter">scitex-linter</a> package.
+Install with: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-linter</span></code>.</p>
+</div>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Check a file</span>
+scitex<span class="w"> </span>linter<span class="w"> </span>check<span class="w"> </span>my_script.py
+
+<span class="c1"># Check with specific severity</span>
+scitex<span class="w"> </span>linter<span class="w"> </span>check<span class="w"> </span>my_script.py<span class="w"> </span>--severity<span class="w"> </span>warning
+
+<span class="c1"># List all rules</span>
+scitex<span class="w"> </span>linter<span class="w"> </span>list-rules
+
+<span class="c1"># Filter by category</span>
+scitex<span class="w"> </span>linter<span class="w"> </span>list-rules<span class="w"> </span>--category<span class="w"> </span>session
+</pre></div>
+</div>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_linter</span><span class="w"> </span><span class="kn">import</span> <span class="n">check_file</span><span class="p">,</span> <span class="n">list_rules</span>
+
+<span class="c1"># Check a file</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">check_file</span><span class="p">(</span><span class="s2">&quot;my_script.py&quot;</span><span class="p">)</span>
+
+<span class="c1"># List available rules</span>
+<span class="n">rules</span> <span class="o">=</span> <span class="n">list_rules</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="rule-categories">
+<h2>Rule Categories<a class="headerlink" href="#rule-categories" title="Link to this heading"></a></h2>
+<p>45 rules across 8 categories:</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 15.0%" />
+<col style="width: 25.0%" />
+<col style="width: 60.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Prefix</p></th>
+<th class="head"><p>Category</p></th>
+<th class="head"><p>Examples</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">STX-S</span></code></p></td>
+<td><p><strong>Session</strong></p></td>
+<td><p>Missing <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>, missing <code class="docutils literal notranslate"><span class="pre">if</span> <span class="pre">__name__</span></code> guard, missing return</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">STX-I</span></code></p></td>
+<td><p><strong>Import</strong></p></td>
+<td><p>Using <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">mngs</span></code> instead of <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex</span></code>, bare <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">numpy</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">STX-IO</span></code></p></td>
+<td><p><strong>I/O</strong></p></td>
+<td><p>Using <code class="docutils literal notranslate"><span class="pre">open()</span></code> instead of <code class="docutils literal notranslate"><span class="pre">stx.io</span></code>, hardcoded paths</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">STX-P</span></code></p></td>
+<td><p><strong>Plotting</strong></p></td>
+<td><p>Using <code class="docutils literal notranslate"><span class="pre">plt.show()</span></code> instead of <code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code>, missing <code class="docutils literal notranslate"><span class="pre">set_xyt</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">STX-ST</span></code></p></td>
+<td><p><strong>Statistics</strong></p></td>
+<td><p>Using <code class="docutils literal notranslate"><span class="pre">scipy.stats</span></code> directly instead of <code class="docutils literal notranslate"><span class="pre">stx.stats</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">STX-PA</span></code></p></td>
+<td><p><strong>Path</strong></p></td>
+<td><p>Hardcoded absolute paths, missing <code class="docutils literal notranslate"><span class="pre">stx.gen.mk_spath</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">STX-FM</span></code></p></td>
+<td><p><strong>Format</strong></p></td>
+<td><p>Non-snake_case names, magic numbers, missing docstrings</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="severity-levels">
+<h2>Severity Levels<a class="headerlink" href="#severity-levels" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>error</strong> – Must fix (breaks reproducibility or correctness)</p></li>
+<li><p><strong>warning</strong> – Should fix (best practice violations)</p></li>
+<li><p><strong>info</strong> – Suggestions for improvement</p></li>
+</ul>
+</section>
+<section id="interfaces">
+<h2>Interfaces<a class="headerlink" href="#interfaces" title="Link to this heading"></a></h2>
+<p>The linter is available through multiple interfaces:</p>
+<p><strong>CLI:</strong></p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>linter<span class="w"> </span>check<span class="w"> </span>script.py
+scitex-linter<span class="w"> </span>check<span class="w"> </span>script.py<span class="w">    </span><span class="c1"># standalone CLI</span>
+</pre></div>
+</div>
+<p><strong>Python API:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_linter</span><span class="w"> </span><span class="kn">import</span> <span class="n">check_file</span><span class="p">,</span> <span class="n">check_source</span>
+
+<span class="n">results</span> <span class="o">=</span> <span class="n">check_file</span><span class="p">(</span><span class="s2">&quot;script.py&quot;</span><span class="p">)</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">check_source</span><span class="p">(</span><span class="s2">&quot;import numpy as np</span><span class="se">\n</span><span class="s2">...&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><strong>Flake8 Plugin:</strong></p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>flake8<span class="w"> </span>--select<span class="o">=</span>STX<span class="w"> </span>script.py
+</pre></div>
+</div>
+<p><strong>MCP Tools:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Available as MCP tools for AI agents</span>
+<span class="n">linter_check</span><span class="p">(</span><span class="n">path</span><span class="o">=</span><span class="s2">&quot;script.py&quot;</span><span class="p">,</span> <span class="n">severity</span><span class="o">=</span><span class="s2">&quot;warning&quot;</span><span class="p">)</span>
+<span class="n">linter_list_rules</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s2">&quot;session&quot;</span><span class="p">)</span>
+<span class="n">linter_check_source</span><span class="p">(</span><span class="n">source</span><span class="o">=</span><span class="s2">&quot;...&quot;</span><span class="p">,</span> <span class="n">filepath</span><span class="o">=</span><span class="s2">&quot;&lt;stdin&gt;&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="configuration">
+<h2>Configuration<a class="headerlink" href="#configuration" title="Link to this heading"></a></h2>
+<p>Configure via <code class="docutils literal notranslate"><span class="pre">pyproject.toml</span></code>:</p>
+<div class="highlight-toml notranslate"><div class="highlight"><pre><span></span><span class="k">[tool.scitex-linter]</span>
+<span class="n">severity</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s2">&quot;warning&quot;</span>
+<span class="n">ignore</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">[</span><span class="s2">&quot;STX-S002&quot;</span><span class="p">,</span><span class="w"> </span><span class="s2">&quot;STX-FM001&quot;</span><span class="p">]</span>
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.linter.html"><span class="doc">scitex.linter</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/logging.html b/src/scitex/_sphinx_html/modules/logging.html
new file mode 100644
index 000000000..dec7a1dde
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/logging.html
@@ -0,0 +1,795 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Logging Module (stx.logging) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
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+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Repro Module (stx.repro)" href="repro.html" />
+    <link rel="prev" title="Config Module (stx.config)" href="config.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/logging.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="logging-module-stx-logging">
+<h1>Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)<a class="headerlink" href="#logging-module-stx-logging" title="Link to this heading"></a></h1>
+<p>Unified logging with file/console output, custom warnings, exception
+hierarchy, and stream redirection.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="kn">import</span> <span class="n">logging</span>
+
+<span class="c1"># Get a logger</span>
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+<span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;Processing data&quot;</span><span class="p">)</span>
+<span class="n">logger</span><span class="o">.</span><span class="n">success</span><span class="p">(</span><span class="s2">&quot;Analysis complete&quot;</span><span class="p">)</span>   <span class="c1"># Custom level (31)</span>
+<span class="n">logger</span><span class="o">.</span><span class="n">fail</span><span class="p">(</span><span class="s2">&quot;Model diverged&quot;</span><span class="p">)</span>         <span class="c1"># Custom level (35)</span>
+
+<span class="c1"># Configure globally</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">configure</span><span class="p">(</span><span class="n">level</span><span class="o">=</span><span class="s2">&quot;DEBUG&quot;</span><span class="p">,</span> <span class="n">log_file</span><span class="o">=</span><span class="s2">&quot;./run.log&quot;</span><span class="p">)</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">set_level</span><span class="p">(</span><span class="s2">&quot;WARNING&quot;</span><span class="p">)</span>
+
+<span class="c1"># Temporary file logging</span>
+<span class="k">with</span> <span class="n">logging</span><span class="o">.</span><span class="n">log_to_file</span><span class="p">(</span><span class="s2">&quot;analysis.log&quot;</span><span class="p">):</span>
+    <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;This goes to both console and file&quot;</span><span class="p">)</span>
+
+<span class="c1"># Warnings</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Large dataset&quot;</span><span class="p">,</span> <span class="n">category</span><span class="o">=</span><span class="n">logging</span><span class="o">.</span><span class="n">PerformanceWarning</span><span class="p">)</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">warn_deprecated</span><span class="p">(</span><span class="s2">&quot;old_func&quot;</span><span class="p">,</span> <span class="s2">&quot;new_func&quot;</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;3.0&quot;</span><span class="p">)</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">filterwarnings</span><span class="p">(</span><span class="s2">&quot;ignore&quot;</span><span class="p">,</span> <span class="n">category</span><span class="o">=</span><span class="n">logging</span><span class="o">.</span><span class="n">UnitWarning</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="log-levels">
+<h2>Log Levels<a class="headerlink" href="#log-levels" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 15.0%" />
+<col style="width: 65.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Level</p></th>
+<th class="head"><p>Value</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">DEBUG</span></code></p></td>
+<td><p>10</p></td>
+<td><p>Detailed diagnostic information</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">INFO</span></code></p></td>
+<td><p>20</p></td>
+<td><p>General operational messages</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">WARNING</span></code></p></td>
+<td><p>30</p></td>
+<td><p>Something unexpected but not fatal</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">SUCCESS</span></code></p></td>
+<td><p>31</p></td>
+<td><p>Custom: operation completed successfully</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">FAIL</span></code></p></td>
+<td><p>35</p></td>
+<td><p>Custom: operation failed (non-fatal)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">ERROR</span></code></p></td>
+<td><p>40</p></td>
+<td><p>Serious problem</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">CRITICAL</span></code></p></td>
+<td><p>50</p></td>
+<td><p>Program may not continue</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="warning-categories">
+<h2>Warning Categories<a class="headerlink" href="#warning-categories" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code> – Base warning class</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code> – SI unit convention issues</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code> – Formatting issues</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code> – Deprecated features</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code> – Performance issues</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code> – Potential data loss</p></li>
+</ul>
+</section>
+<section id="exception-hierarchy">
+<h2>Exception Hierarchy<a class="headerlink" href="#exception-hierarchy" title="Link to this heading"></a></h2>
+<p>All inherit from <code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code>:</p>
+<ul class="simple">
+<li><p><strong>I/O</strong>: <code class="docutils literal notranslate"><span class="pre">IOError</span></code>, <code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code>, <code class="docutils literal notranslate"><span class="pre">SaveError</span></code>, <code class="docutils literal notranslate"><span class="pre">LoadError</span></code></p></li>
+<li><p><strong>Config</strong>: <code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code>, <code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code>, <code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></p></li>
+<li><p><strong>Path</strong>: <code class="docutils literal notranslate"><span class="pre">PathError</span></code>, <code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code>, <code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></p></li>
+<li><p><strong>Data</strong>: <code class="docutils literal notranslate"><span class="pre">DataError</span></code>, <code class="docutils literal notranslate"><span class="pre">ShapeError</span></code>, <code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></p></li>
+<li><p><strong>Plotting</strong>: <code class="docutils literal notranslate"><span class="pre">PlottingError</span></code>, <code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code>, <code class="docutils literal notranslate"><span class="pre">AxisError</span></code></p></li>
+<li><p><strong>Stats</strong>: <code class="docutils literal notranslate"><span class="pre">StatsError</span></code>, <code class="docutils literal notranslate"><span class="pre">TestError</span></code></p></li>
+<li><p><strong>Scholar</strong>: <code class="docutils literal notranslate"><span class="pre">ScholarError</span></code>, <code class="docutils literal notranslate"><span class="pre">SearchError</span></code>, <code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code>, <code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></p></li>
+<li><p><strong>NN</strong>: <code class="docutils literal notranslate"><span class="pre">NNError</span></code>, <code class="docutils literal notranslate"><span class="pre">ModelError</span></code></p></li>
+<li><p><strong>Template</strong>: <code class="docutils literal notranslate"><span class="pre">TemplateError</span></code>, <code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></p></li>
+</ul>
+</section>
+<section id="stream-redirection">
+<h2>Stream Redirection<a class="headerlink" href="#stream-redirection" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="kn">import</span> <span class="n">tee</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+
+<span class="c1"># Redirect stdout/stderr to log files</span>
+<span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span> <span class="o">=</span> <span class="n">tee</span><span class="p">(</span><span class="n">sys</span><span class="p">,</span> <span class="n">sdir</span><span class="o">=</span><span class="s2">&quot;./output&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>The <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> decorator handles this automatically.</p>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.logging.html"><span class="doc">scitex.logging API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="config.html" class="btn btn-neutral float-left" title="Config Module (stx.config)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/modules/media.html b/src/scitex/_sphinx_html/modules/media.html
new file mode 100644
index 000000000..f41af4de4
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/media.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>media Module (stx.media) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="security Module (stx.security)" href="security.html" />
+    <link rel="prev" title="gists Module (stx.gists)" href="gists.html" /> 
+</head>
+
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+        <div class="wy-side-nav-search" >
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+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/media.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="media-module-stx-media">
+<h1>media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)<a class="headerlink" href="#media-module-stx-media" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.media</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="gists.html" class="btn btn-neutral float-left" title="gists Module (stx.gists)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="security.html" class="btn btn-neutral float-right" title="security Module (stx.security)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/module.html b/src/scitex/_sphinx_html/modules/module.html
new file mode 100644
index 000000000..a25df5f31
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/module.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>module Module (stx.module) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="gists Module (stx.gists)" href="gists.html" />
+    <link rel="prev" title="compat Module (stx.compat)" href="compat.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/module.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-module-stx-module">
+<h1>module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)<a class="headerlink" href="#module-module-stx-module" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.module</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="compat.html" class="btn btn-neutral float-left" title="compat Module (stx.compat)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="gists.html" class="btn btn-neutral float-right" title="gists Module (stx.gists)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/msword.html b/src/scitex/_sphinx_html/modules/msword.html
new file mode 100644
index 000000000..a11d138b3
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/msword.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>msword Module (stx.msword) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="tex Module (stx.tex)" href="tex.html" />
+    <link rel="prev" title="web Module (stx.web)" href="web.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/msword.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="msword-module-stx-msword">
+<h1>msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)<a class="headerlink" href="#msword-module-stx-msword" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.msword</span> for the auto-generated Python API.</p>
+</section>
+
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+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="web.html" class="btn btn-neutral float-left" title="web Module (stx.web)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="tex.html" class="btn btn-neutral float-right" title="tex Module (stx.tex)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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diff --git a/src/scitex/_sphinx_html/modules/nn.html b/src/scitex/_sphinx_html/modules/nn.html
new file mode 100644
index 000000000..d1fd86ad4
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/nn.html
@@ -0,0 +1,757 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>NN Module (stx.nn) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="torch Module (stx.torch)" href="torch.html" />
+    <link rel="prev" title="AI Module (stx.ai)" href="ai.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
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+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
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+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</li>
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+             
+  <section id="nn-module-stx-nn">
+<h1>NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)<a class="headerlink" href="#nn-module-stx-nn" title="Link to this heading"></a></h1>
+<p>PyTorch neural network layers for signal processing and neuroscience
+applications.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">torch</span>
+
+<span class="c1"># Bandpass filtering as a differentiable layer</span>
+<span class="n">bpf</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">nn</span><span class="o">.</span><span class="n">BandPassFilter</span><span class="p">(</span>
+    <span class="n">bands</span><span class="o">=</span><span class="p">[[</span><span class="mi">4</span><span class="p">,</span> <span class="mi">8</span><span class="p">],</span> <span class="p">[</span><span class="mi">8</span><span class="p">,</span> <span class="mi">13</span><span class="p">],</span> <span class="p">[</span><span class="mi">13</span><span class="p">,</span> <span class="mi">30</span><span class="p">]],</span>  <span class="c1"># theta, alpha, beta</span>
+    <span class="n">fs</span><span class="o">=</span><span class="mi">256</span><span class="p">,</span> <span class="n">seq_len</span><span class="o">=</span><span class="mi">1024</span>
+<span class="p">)</span>
+<span class="n">filtered</span> <span class="o">=</span> <span class="n">bpf</span><span class="p">(</span><span class="n">signal</span><span class="p">)</span>  <span class="c1"># (batch, channels, 3, 1024)</span>
+
+<span class="c1"># Power spectral density</span>
+<span class="n">psd</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">nn</span><span class="o">.</span><span class="n">PSD</span><span class="p">(</span><span class="n">sample_rate</span><span class="o">=</span><span class="mi">256</span><span class="p">)</span>
+<span class="n">power</span><span class="p">,</span> <span class="n">freqs</span> <span class="o">=</span> <span class="n">psd</span><span class="p">(</span><span class="n">signal</span><span class="p">)</span>
+
+<span class="c1"># Phase-amplitude coupling</span>
+<span class="n">pac</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">nn</span><span class="o">.</span><span class="n">PAC</span><span class="p">(</span><span class="n">seq_len</span><span class="o">=</span><span class="mi">1024</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="mi">256</span><span class="p">)</span>
+<span class="n">coupling</span> <span class="o">=</span> <span class="n">pac</span><span class="p">(</span><span class="n">signal</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="signal-processing-layers">
+<h2>Signal Processing Layers<a class="headerlink" href="#signal-processing-layers" title="Link to this heading"></a></h2>
+<p><strong>Filtering</strong> (all differentiable):</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">BandPassFilter(bands,</span> <span class="pre">fs,</span> <span class="pre">seq_len)</span></code> – Multi-band frequency filtering</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">BandStopFilter(bands,</span> <span class="pre">fs,</span> <span class="pre">seq_len)</span></code> – Reject frequency bands</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">LowPassFilter(cutoffs_hz,</span> <span class="pre">fs,</span> <span class="pre">seq_len)</span></code> – Anti-aliasing / smoothing</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">HighPassFilter(cutoffs_hz,</span> <span class="pre">fs,</span> <span class="pre">seq_len)</span></code> – High-frequency emphasis</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">GaussianFilter(sigma)</span></code> – Gaussian kernel smoothing</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">DifferentiableBandPassFilter(...)</span></code> – Learnable bandpass parameters</p></li>
+</ul>
+<p><strong>Spectral Analysis</strong>:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">Spectrogram(sampling_rate,</span> <span class="pre">n_fft)</span></code> – STFT-based magnitude spectrogram</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">PSD(sample_rate,</span> <span class="pre">prob)</span></code> – FFT-based power spectral density</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">Wavelet(samp_rate,</span> <span class="pre">freq_scale)</span></code> – Continuous wavelet transform</p></li>
+</ul>
+<p><strong>Phase &amp; Coupling</strong>:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">Hilbert(seq_len)</span></code> – Analytic signal (phase + amplitude)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ModulationIndex(n_bins)</span></code> – Phase-amplitude coupling metric</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">PAC(seq_len,</span> <span class="pre">fs,</span> <span class="pre">...)</span></code> – Complete PAC analysis pipeline</p></li>
+</ul>
+</section>
+<section id="channel-manipulation">
+<h2>Channel Manipulation<a class="headerlink" href="#channel-manipulation" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">SwapChannels()</span></code> – Random channel permutation (training augmentation)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">DropoutChannels(dropout)</span></code> – Drop entire channels</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ChannelGainChanger(n_chs)</span></code> – Learnable per-channel scaling</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">FreqGainChanger(n_bands,</span> <span class="pre">fs)</span></code> – Learnable per-band scaling</p></li>
+</ul>
+</section>
+<section id="attention-shape">
+<h2>Attention &amp; Shape<a class="headerlink" href="#attention-shape" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">SpatialAttention(n_chs_in)</span></code> – Adaptive channel weighting</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">TransposeLayer(axis1,</span> <span class="pre">axis2)</span></code> – Dimension permutation</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">AxiswiseDropout(dropout_prob,</span> <span class="pre">dim)</span></code> – Drop entire axis</p></li>
+</ul>
+</section>
+<section id="architectures">
+<h2>Architectures<a class="headerlink" href="#architectures" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">ResNet1D(n_chs,</span> <span class="pre">n_out,</span> <span class="pre">n_blks)</span></code> – 1D residual network</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">BNet</span></code> / <code class="docutils literal notranslate"><span class="pre">BNet_Res</span></code> – Multi-head EEG classifier</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">MNet1000</span></code> – 2D CNN feature extractor</p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.nn.html"><span class="doc">scitex.nn API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
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+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
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+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/notebook.rst" class="fa fa-github"> Edit on GitHub</a>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
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+             
+  <section id="notebook-module-stx-notebook">
+<h1>notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)<a class="headerlink" href="#notebook-module-stx-notebook" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.notebook</span> for the auto-generated Python API.</p>
+</section>
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+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="writer.html" class="btn btn-neutral float-left" title="Writer Module (stx.writer)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="ai.html" class="btn btn-neutral float-right" title="AI Module (stx.ai)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
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+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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diff --git a/src/scitex/_sphinx_html/modules/notify.html b/src/scitex/_sphinx_html/modules/notify.html
new file mode 100644
index 000000000..760aa1039
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/notify.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>notify Module (stx.notify) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="social Module (stx.social)" href="social.html" />
+    <link rel="prev" title="audio Module (stx.audio)" href="audio.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+<p>See <span class="xref std std-doc">/api/scitex.notify</span> for the auto-generated Python API.</p>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/os.html b/src/scitex/_sphinx_html/modules/os.html
new file mode 100644
index 000000000..caa75a462
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/os.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>os Module (stx.os) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="sh Module (stx.sh)" href="sh.html" />
+    <link rel="prev" title="path Module (stx.path)" href="path.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/os.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="os-module-stx-os">
+<h1>os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)<a class="headerlink" href="#os-module-stx-os" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.os</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="path.html" class="btn btn-neutral float-left" title="path Module (stx.path)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="sh.html" class="btn btn-neutral float-right" title="sh Module (stx.sh)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/parallel.html b/src/scitex/_sphinx_html/modules/parallel.html
new file mode 100644
index 000000000..0112e810b
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/parallel.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>parallel Module (stx.parallel) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="linalg Module (stx.linalg)" href="linalg.html" />
+    <link rel="prev" title="git Module (stx.git)" href="git.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l2 current"><a class="current reference internal" href="#">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/parallel.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="parallel-module-stx-parallel">
+<h1>parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)<a class="headerlink" href="#parallel-module-stx-parallel" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.parallel</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="git.html" class="btn btn-neutral float-left" title="git Module (stx.git)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="linalg.html" class="btn btn-neutral float-right" title="linalg Module (stx.linalg)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/path.html b/src/scitex/_sphinx_html/modules/path.html
new file mode 100644
index 000000000..3a026291b
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/path.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>path Module (stx.path) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="os Module (stx.os)" href="os.html" />
+    <link rel="prev" title="dict Module (stx.dict)" href="dict.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
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+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/path.rst" class="fa fa-github"> Edit on GitHub</a>
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+  </ul>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="path-module-stx-path">
+<h1>path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)<a class="headerlink" href="#path-module-stx-path" title="Link to this heading"></a></h1>
+<p>See <a class="reference internal" href="../api/scitex.path.html"><span class="doc">scitex.path API Reference</span></a> for the auto-generated Python API.</p>
+</section>
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+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="dict.html" class="btn btn-neutral float-left" title="dict Module (stx.dict)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="os.html" class="btn btn-neutral float-right" title="os Module (stx.os)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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diff --git a/src/scitex/_sphinx_html/modules/pd.html b/src/scitex/_sphinx_html/modules/pd.html
new file mode 100644
index 000000000..05e14ab26
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/pd.html
@@ -0,0 +1,721 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>PD Module (stx.pd) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="db Module (stx.db)" href="db.html" />
+    <link rel="prev" title="benchmark Module (stx.benchmark)" href="benchmark.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
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+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
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+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/pd.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="pd-module-stx-pd">
+<h1>PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)<a class="headerlink" href="#pd-module-stx-pd" title="Link to this heading"></a></h1>
+<p>Pandas DataFrame helper functions for common transformations.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+
+<span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">({</span>
+    <span class="s2">&quot;subject&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;A&quot;</span><span class="p">,</span> <span class="s2">&quot;A&quot;</span><span class="p">,</span> <span class="s2">&quot;B&quot;</span><span class="p">,</span> <span class="s2">&quot;B&quot;</span><span class="p">],</span>
+    <span class="s2">&quot;condition&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;ctrl&quot;</span><span class="p">,</span> <span class="s2">&quot;exp&quot;</span><span class="p">,</span> <span class="s2">&quot;ctrl&quot;</span><span class="p">,</span> <span class="s2">&quot;exp&quot;</span><span class="p">],</span>
+    <span class="s2">&quot;score&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">10</span><span class="p">,</span> <span class="mi">15</span><span class="p">,</span> <span class="mi">12</span><span class="p">,</span> <span class="mi">18</span><span class="p">],</span>
+<span class="p">})</span>
+
+<span class="c1"># Find individual (unique) values</span>
+<span class="n">subjects</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">pd</span><span class="o">.</span><span class="n">find_indi</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="s2">&quot;subject&quot;</span><span class="p">)</span>
+
+<span class="c1"># Convert to long format</span>
+<span class="n">melted</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">pd</span><span class="o">.</span><span class="n">melt_cols</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">id_vars</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;subject&quot;</span><span class="p">])</span>
+
+<span class="c1"># Merge columns</span>
+<span class="n">merged</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">pd</span><span class="o">.</span><span class="n">merge_cols</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">cols</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;subject&quot;</span><span class="p">,</span> <span class="s2">&quot;condition&quot;</span><span class="p">],</span> <span class="n">sep</span><span class="o">=</span><span class="s2">&quot;_&quot;</span><span class="p">)</span>
+
+<span class="c1"># Force to DataFrame</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">pd</span><span class="o">.</span><span class="n">force_df</span><span class="p">({</span><span class="s2">&quot;a&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">],</span> <span class="s2">&quot;b&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">]})</span>
+</pre></div>
+</div>
+</section>
+<section id="available-functions">
+<h2>Available Functions<a class="headerlink" href="#available-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">find_indi(df,</span> <span class="pre">col)</span></code> – Find unique individual identifiers</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">find_pval(df)</span></code> – Find p-value columns in a DataFrame</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">force_df(data)</span></code> – Convert any data to a DataFrame</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">melt_cols(df,</span> <span class="pre">id_vars)</span></code> – Melt columns to long format</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">merge_cols(df,</span> <span class="pre">cols,</span> <span class="pre">sep)</span></code> – Merge multiple columns into one</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">to_xyz(df,</span> <span class="pre">x,</span> <span class="pre">y,</span> <span class="pre">z)</span></code> – Reshape to x, y, z pivot format</p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.pd.html"><span class="doc">scitex.pd API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
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+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
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+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/plt.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="plt-module-stx-plt">
+<h1>PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)<a class="headerlink" href="#plt-module-stx-plt" title="Link to this heading"></a></h1>
+<p>Publication-ready figures powered by <a class="reference external" href="https://github.com/ywatanabe1989/figrecipe">figrecipe</a>.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">stx.plt</span></code> wraps matplotlib via the <strong>figrecipe</strong> package, adding
+mm-based layout, data-tracking axes, auto CSV export, and reproducible
+YAML recipes. The standalone package can also be used directly:
+<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">figrecipe</span></code>.</p>
+</div>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Create figure (returns FigWrapper, AxisWrapper)</span>
+<span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+<span class="n">fig</span><span class="p">,</span> <span class="n">axes</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
+
+<span class="c1"># Data-tracking plot methods (all record data for CSV export)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s2">&quot;signal&quot;</span><span class="p">)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_scatter</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.5</span><span class="p">)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_bar</span><span class="p">(</span><span class="n">labels</span><span class="p">,</span> <span class="n">values</span><span class="p">)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_heatmap</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_violin</span><span class="p">(</span><span class="n">groups</span><span class="p">)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_box</span><span class="p">(</span><span class="n">groups</span><span class="p">)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_kde</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+
+<span class="c1"># Axis helper (xlabel, ylabel, title in one call)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Time (s)&quot;</span><span class="p">,</span> <span class="s2">&quot;Amplitude (mV)&quot;</span><span class="p">,</span> <span class="s2">&quot;EEG Signal&quot;</span><span class="p">)</span>
+
+<span class="c1"># Save (auto-exports CSV + YAML recipe)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;figure.png&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="plot-types-47">
+<h2>Plot Types (47)<a class="headerlink" href="#plot-types-47" title="Link to this heading"></a></h2>
+<p>All <code class="docutils literal notranslate"><span class="pre">ax.plot_*</span></code> methods track their input data so it can be exported as CSV.</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 25.0%" />
+<col style="width: 75.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Category</p></th>
+<th class="head"><p>Types</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><strong>Line &amp; Curve</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">plot</span></code>, <code class="docutils literal notranslate"><span class="pre">step</span></code>, <code class="docutils literal notranslate"><span class="pre">fill</span></code>, <code class="docutils literal notranslate"><span class="pre">fill_between</span></code>, <code class="docutils literal notranslate"><span class="pre">fill_betweenx</span></code>, <code class="docutils literal notranslate"><span class="pre">errorbar</span></code>, <code class="docutils literal notranslate"><span class="pre">stackplot</span></code>, <code class="docutils literal notranslate"><span class="pre">stairs</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><strong>Scatter &amp; Points</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scatter</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><strong>Bar &amp; Categorical</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">bar</span></code>, <code class="docutils literal notranslate"><span class="pre">barh</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><strong>Distribution</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">hist</span></code>, <code class="docutils literal notranslate"><span class="pre">hist2d</span></code>, <code class="docutils literal notranslate"><span class="pre">boxplot</span></code>, <code class="docutils literal notranslate"><span class="pre">violinplot</span></code>, <code class="docutils literal notranslate"><span class="pre">ecdf</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><strong>2D Image &amp; Matrix</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">imshow</span></code>, <code class="docutils literal notranslate"><span class="pre">matshow</span></code>, <code class="docutils literal notranslate"><span class="pre">pcolor</span></code>, <code class="docutils literal notranslate"><span class="pre">pcolormesh</span></code>, <code class="docutils literal notranslate"><span class="pre">hexbin</span></code>, <code class="docutils literal notranslate"><span class="pre">spy</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><strong>Contour &amp; Surface</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">contour</span></code>, <code class="docutils literal notranslate"><span class="pre">contourf</span></code>, <code class="docutils literal notranslate"><span class="pre">tricontour</span></code>, <code class="docutils literal notranslate"><span class="pre">tricontourf</span></code>, <code class="docutils literal notranslate"><span class="pre">tripcolor</span></code>, <code class="docutils literal notranslate"><span class="pre">triplot</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><strong>Spectral &amp; Signal</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">specgram</span></code>, <code class="docutils literal notranslate"><span class="pre">psd</span></code>, <code class="docutils literal notranslate"><span class="pre">csd</span></code>, <code class="docutils literal notranslate"><span class="pre">cohere</span></code>, <code class="docutils literal notranslate"><span class="pre">angle_spectrum</span></code>, <code class="docutils literal notranslate"><span class="pre">magnitude_spectrum</span></code>, <code class="docutils literal notranslate"><span class="pre">phase_spectrum</span></code>, <code class="docutils literal notranslate"><span class="pre">acorr</span></code>, <code class="docutils literal notranslate"><span class="pre">xcorr</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><strong>Vector &amp; Flow</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">quiver</span></code>, <code class="docutils literal notranslate"><span class="pre">barbs</span></code>, <code class="docutils literal notranslate"><span class="pre">streamplot</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><strong>Special</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pie</span></code>, <code class="docutils literal notranslate"><span class="pre">stem</span></code>, <code class="docutils literal notranslate"><span class="pre">eventplot</span></code>, <code class="docutils literal notranslate"><span class="pre">loglog</span></code>, <code class="docutils literal notranslate"><span class="pre">semilogx</span></code>, <code class="docutils literal notranslate"><span class="pre">semilogy</span></code>, <code class="docutils literal notranslate"><span class="pre">graph</span></code></p></td>
+</tr>
+</tbody>
+</table>
+<p>Standard matplotlib methods (<code class="docutils literal notranslate"><span class="pre">ax.plot</span></code>, <code class="docutils literal notranslate"><span class="pre">ax.scatter</span></code>, etc.) also work
+and are tracked.</p>
+</section>
+<section id="mm-based-layout">
+<h2>MM-Based Layout<a class="headerlink" href="#mm-based-layout" title="Link to this heading"></a></h2>
+<p>Figures use millimeter dimensions for precise control:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">(</span>
+    <span class="n">axes_width_mm</span><span class="o">=</span><span class="mi">80</span><span class="p">,</span>
+    <span class="n">axes_height_mm</span><span class="o">=</span><span class="mi">60</span><span class="p">,</span>
+<span class="p">)</span>
+
+<span class="c1"># Multi-panel with exact spacing</span>
+<span class="n">fig</span><span class="p">,</span> <span class="n">axes</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">(</span>
+    <span class="n">nrows</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">ncols</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span>
+    <span class="n">axes_width_mm</span><span class="o">=</span><span class="mi">50</span><span class="p">,</span>
+    <span class="n">axes_height_mm</span><span class="o">=</span><span class="mi">40</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="axis-helpers">
+<h2>Axis Helpers<a class="headerlink" href="#axis-helpers" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Set xlabel, ylabel, title in one call</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;X Label&quot;</span><span class="p">,</span> <span class="s2">&quot;Y Label&quot;</span><span class="p">,</span> <span class="s2">&quot;Title&quot;</span><span class="p">)</span>
+
+<span class="c1"># Automatic axis label formatting with units</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Frequency (Hz)&quot;</span><span class="p">,</span> <span class="s2">&quot;Power (dB)&quot;</span><span class="p">,</span> <span class="s2">&quot;Power Spectrum&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="figure-composition">
+<h2>Figure Composition<a class="headerlink" href="#figure-composition" title="Link to this heading"></a></h2>
+<p>Combine multiple figures into panels:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Compose panels A, B, C</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">compose</span><span class="p">(</span>
+    <span class="n">sources</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;fig_a.png&quot;</span><span class="p">,</span> <span class="s2">&quot;fig_b.png&quot;</span><span class="p">,</span> <span class="s2">&quot;fig_c.png&quot;</span><span class="p">],</span>
+    <span class="n">output_path</span><span class="o">=</span><span class="s2">&quot;combined.png&quot;</span><span class="p">,</span>
+    <span class="n">layout</span><span class="o">=</span><span class="s2">&quot;horizontal&quot;</span><span class="p">,</span>
+    <span class="n">panel_labels</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="statistical-annotations">
+<h2>Statistical Annotations<a class="headerlink" href="#statistical-annotations" title="Link to this heading"></a></h2>
+<p>Add significance brackets to figures:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># In the declarative spec</span>
+<span class="n">stat_annotations</span><span class="p">:</span>
+  <span class="o">-</span> <span class="n">x1</span><span class="p">:</span> <span class="mi">0</span>
+    <span class="n">x2</span><span class="p">:</span> <span class="mi">1</span>
+    <span class="n">y</span><span class="p">:</span> <span class="mf">5.5</span>
+    <span class="n">text</span><span class="p">:</span> <span class="s2">&quot;***&quot;</span>
+  <span class="o">-</span> <span class="n">x1</span><span class="p">:</span> <span class="mi">0</span>
+    <span class="n">x2</span><span class="p">:</span> <span class="mi">2</span>
+    <span class="n">y</span><span class="p">:</span> <span class="mf">6.5</span>
+    <span class="n">p_value</span><span class="p">:</span> <span class="mf">0.02</span>
+    <span class="n">style</span><span class="p">:</span> <span class="n">stars</span>
+</pre></div>
+</div>
+</section>
+<section id="reproducible-figures">
+<h2>Reproducible Figures<a class="headerlink" href="#reproducible-figures" title="Link to this heading"></a></h2>
+<p>When saved via <code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code>, figures get a <code class="docutils literal notranslate"><span class="pre">.yaml</span></code> recipe.
+Reproduce any figure from its recipe:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">reproduce</span><span class="p">(</span><span class="s2">&quot;figure.yaml&quot;</span><span class="p">,</span> <span class="n">output_path</span><span class="o">=</span><span class="s2">&quot;reproduced.png&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="style-presets">
+<h2>Style Presets<a class="headerlink" href="#style-presets" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">figrecipe</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">fr</span>
+
+<span class="n">fr</span><span class="o">.</span><span class="n">load_style</span><span class="p">(</span><span class="s2">&quot;SCITEX&quot;</span><span class="p">)</span>       <span class="c1"># Publication defaults</span>
+<span class="n">fr</span><span class="o">.</span><span class="n">load_style</span><span class="p">(</span><span class="s2">&quot;MATPLOTLIB&quot;</span><span class="p">)</span>   <span class="c1"># Standard matplotlib</span>
+</pre></div>
+</div>
+<p>See the <a class="reference internal" href="../gallery.html"><span class="doc">Plot Gallery</span></a> for visual examples.</p>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.plt.html"><span class="doc">scitex.plt API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="stats.html" class="btn btn-neutral float-left" title="Stats Module (stx.stats)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="dsp.html" class="btn btn-neutral float-right" title="DSP Module (stx.dsp)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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diff --git a/src/scitex/_sphinx_html/modules/project.html b/src/scitex/_sphinx_html/modules/project.html
new file mode 100644
index 000000000..dbf77acaf
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/project.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>project Module (stx.project) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+      <script src="../_static/jquery.js?v=5d32c60e"></script>
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Installation" href="../installation.html" />
+    <link rel="prev" title="events Module (stx.events)" href="events.html" /> 
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+
+<body class="wy-body-for-nav"> 
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/project.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="project-module-stx-project">
+<h1>project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)<a class="headerlink" href="#project-module-stx-project" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.project</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="events.html" class="btn btn-neutral float-left" title="events Module (stx.events)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../installation.html" class="btn btn-neutral float-right" title="Installation" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/repro.html b/src/scitex/_sphinx_html/modules/repro.html
new file mode 100644
index 000000000..71eb82b30
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/repro.html
@@ -0,0 +1,743 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Repro Module (stx.repro) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Clew Module (stx.clew)" href="clew.html" />
+    <link rel="prev" title="Logging Module (stx.logging)" href="logging.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/repro.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="repro-module-stx-repro">
+<h1>Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)<a class="headerlink" href="#repro-module-stx-repro" title="Link to this heading"></a></h1>
+<p>Reproducibility utilities: random state management, ID generation,
+timestamps, and array hashing.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Fix all random seeds (numpy, torch, random, ...)</span>
+<span class="n">rng</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">get</span><span class="p">()</span>           <span class="c1"># Global manager (seed=42)</span>
+<span class="n">rng</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">reset</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">123</span><span class="p">)</span> <span class="c1"># Reset with new seed</span>
+
+<span class="c1"># Named generators for deterministic results</span>
+<span class="n">data_gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">data_gen</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>  <span class="c1"># Same seed+name = same result</span>
+
+<span class="c1"># Unique identifiers</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">gen_id</span><span class="p">()</span>
+<span class="c1"># → &quot;2026Y-02M-13D-14h30m15s_a3Bc9xY2&quot;</span>
+
+<span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">gen_timestamp</span><span class="p">()</span>
+<span class="c1"># → &quot;2026-0213-1430&quot;</span>
+
+<span class="c1"># Verify reproducibility</span>
+<span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># First: caches hash</span>
+<span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># Later: verifies match</span>
+</pre></div>
+</div>
+</section>
+<section id="randomstatemanager">
+<h2>RandomStateManager<a class="headerlink" href="#randomstatemanager" title="Link to this heading"></a></h2>
+<p>Central class for managing random states across libraries.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">rng</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">RandomStateManager</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">42</span><span class="p">)</span>
+
+<span class="c1"># Named generators (same name + seed = deterministic)</span>
+<span class="n">np_gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;experiment&quot;</span><span class="p">)</span>
+<span class="n">torch_gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_torch_generator</span><span class="p">(</span><span class="s2">&quot;model&quot;</span><span class="p">)</span>
+
+<span class="c1"># Checkpoint and restore</span>
+<span class="n">rng</span><span class="o">.</span><span class="n">checkpoint</span><span class="p">(</span><span class="s2">&quot;before_training&quot;</span><span class="p">)</span>
+<span class="n">rng</span><span class="o">.</span><span class="n">restore</span><span class="p">(</span><span class="s2">&quot;before_training.pkl&quot;</span><span class="p">)</span>
+
+<span class="c1"># Temporary seed change</span>
+<span class="k">with</span> <span class="n">rng</span><span class="o">.</span><span class="n">temporary_seed</span><span class="p">(</span><span class="mi">999</span><span class="p">):</span>
+    <span class="n">noise</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;noise&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">10</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>Automatically fixes seeds for: <code class="docutils literal notranslate"><span class="pre">random</span></code>, <code class="docutils literal notranslate"><span class="pre">numpy</span></code>, <code class="docutils literal notranslate"><span class="pre">torch</span></code> (+ CUDA),
+<code class="docutils literal notranslate"><span class="pre">tensorflow</span></code>, <code class="docutils literal notranslate"><span class="pre">jax</span></code>.</p>
+</section>
+<section id="available-functions">
+<h2>Available Functions<a class="headerlink" href="#available-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get(verbose)</span></code> – Get or create global RandomStateManager singleton</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">reset(seed,</span> <span class="pre">verbose)</span></code> – Reset global instance with new seed</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">fix_seeds(seed,</span> <span class="pre">...)</span></code> – Legacy function (use RandomStateManager instead)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">gen_id(time_format,</span> <span class="pre">N)</span></code> – Generate unique timestamp + random ID</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code> – Generate timestamp string for file naming</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">hash_array(array_data)</span></code> – SHA256 hash of numpy array (16 chars)</p></li>
+</ul>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.repro.html"><span class="doc">scitex.repro API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="logging.html" class="btn btn-neutral float-left" title="Logging Module (stx.logging)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="clew.html" class="btn btn-neutral float-right" title="Clew Module (stx.clew)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/resource.html b/src/scitex/_sphinx_html/modules/resource.html
new file mode 100644
index 000000000..a5bc7db46
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/resource.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>resource Module (stx.resource) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="utils Module (stx.utils)" href="utils.html" />
+    <link rel="prev" title="context Module (stx.context)" href="context.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
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+          
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/resource.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="resource-module-stx-resource">
+<h1>resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)<a class="headerlink" href="#resource-module-stx-resource" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.resource</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="context.html" class="btn btn-neutral float-left" title="context Module (stx.context)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="utils.html" class="btn btn-neutral float-right" title="utils Module (stx.utils)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+        </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/rng.html b/src/scitex/_sphinx_html/modules/rng.html
new file mode 100644
index 000000000..b2d30b22a
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/rng.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>rng Module (stx.rng) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="context Module (stx.context)" href="context.html" />
+    <link rel="prev" title="types Module (stx.types)" href="types.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
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+<p>See <span class="xref std std-doc">/api/scitex.rng</span> for the auto-generated Python API.</p>
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diff --git a/src/scitex/_sphinx_html/modules/schema.html b/src/scitex/_sphinx_html/modules/schema.html
new file mode 100644
index 000000000..b25f5360d
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/schema.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>schema Module (stx.schema) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
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+      <script src="../_static/jquery.js?v=5d32c60e"></script>
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="app Module (stx.app)" href="app.html" />
+    <link rel="prev" title="dataset Module (stx.dataset)" href="dataset.html" /> 
+</head>
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+    <input type="hidden" name="check_keywords" value="yes" />
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/schema.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="schema-module-stx-schema">
+<h1>schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)<a class="headerlink" href="#schema-module-stx-schema" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.schema</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="dataset.html" class="btn btn-neutral float-left" title="dataset Module (stx.dataset)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="app.html" class="btn btn-neutral float-right" title="app Module (stx.app)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/scholar.html b/src/scitex/_sphinx_html/modules/scholar.html
new file mode 100644
index 000000000..b65443bd8
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/scholar.html
@@ -0,0 +1,801 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Scholar Module (stx.scholar) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Writer Module (stx.writer)" href="writer.html" />
+    <link rel="prev" title="canvas Module (stx.canvas)" href="canvas.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/scholar.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="scholar-module-stx-scholar">
+<h1>Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)<a class="headerlink" href="#scholar-module-stx-scholar" title="Link to this heading"></a></h1>
+<p>Literature management: search papers, download PDFs, enrich BibTeX,
+and organize a local library across multiple projects.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.scholar</span><span class="w"> </span><span class="kn">import</span> <span class="n">Scholar</span>
+
+<span class="n">scholar</span> <span class="o">=</span> <span class="n">Scholar</span><span class="p">(</span><span class="n">project</span><span class="o">=</span><span class="s2">&quot;my_research&quot;</span><span class="p">)</span>
+
+<span class="c1"># Load and enrich BibTeX</span>
+<span class="n">papers</span> <span class="o">=</span> <span class="n">scholar</span><span class="o">.</span><span class="n">load_bibtex</span><span class="p">(</span><span class="s2">&quot;references.bib&quot;</span><span class="p">)</span>
+<span class="n">enriched</span> <span class="o">=</span> <span class="n">scholar</span><span class="o">.</span><span class="n">enrich_papers</span><span class="p">(</span><span class="n">papers</span><span class="p">)</span>
+<span class="c1"># Adds: DOIs, abstracts, citation counts, impact factors</span>
+
+<span class="c1"># Save to library and export</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">save_papers_to_library</span><span class="p">(</span><span class="n">enriched</span><span class="p">)</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">save_papers_as_bibtex</span><span class="p">(</span><span class="n">enriched</span><span class="p">,</span> <span class="s2">&quot;enriched.bib&quot;</span><span class="p">)</span>
+
+<span class="c1"># Search your library</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">scholar</span><span class="o">.</span><span class="n">search_library</span><span class="p">(</span><span class="s2">&quot;neural oscillations&quot;</span><span class="p">)</span>
+
+<span class="c1"># Download PDFs</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">download_pdfs</span><span class="p">(</span><span class="n">dois</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-usage">
+<h2>CLI Usage<a class="headerlink" href="#cli-usage" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Full pipeline from BibTeX</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>bibtex<span class="w"> </span>refs.bib<span class="w"> </span>--project<span class="w"> </span>myresearch<span class="w"> </span>--num-workers<span class="w"> </span><span class="m">8</span>
+
+<span class="c1"># Search papers</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>search<span class="w"> </span><span class="s2">&quot;deep learning EEG&quot;</span>
+
+<span class="c1"># Download PDFs</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>download<span class="w"> </span>--doi<span class="w"> </span><span class="m">10</span>.1038/nature12373
+
+<span class="c1"># Institutional authentication</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>auth<span class="w"> </span>--method<span class="w"> </span>openathens
+scitex<span class="w"> </span>scholar<span class="w"> </span>auth<span class="w"> </span>--method<span class="w"> </span>shibboleth<span class="w"> </span>--institution<span class="w"> </span><span class="s2">&quot;MIT&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="data-sources">
+<h2>Data Sources<a class="headerlink" href="#data-sources" title="Link to this heading"></a></h2>
+<p>Searches and enriches from:</p>
+<ul class="simple">
+<li><p><strong>CrossRef</strong> (167M+ papers) – DOI resolution, citation counts</p></li>
+<li><p><strong>Semantic Scholar</strong> – Abstracts, references, influence scores</p></li>
+<li><p><strong>PubMed</strong> – Biomedical literature</p></li>
+<li><p><strong>arXiv</strong> – Preprints</p></li>
+<li><p><strong>OpenAlex</strong> (284M+ works) – Open metadata</p></li>
+</ul>
+</section>
+<section id="key-classes">
+<h2>Key Classes<a class="headerlink" href="#key-classes" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">Scholar</span></code> – Main entry point (search, enrich, download, organize)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">Paper</span></code> – Type-safe metadata container (Pydantic model)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">Papers</span></code> – Collection with filtering, sorting, and export</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScholarConfig</span></code> – YAML-based configuration</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScholarLibrary</span></code> – Local library storage and caching</p></li>
+</ul>
+</section>
+<section id="paper-metadata">
+<h2>Paper Metadata<a class="headerlink" href="#paper-metadata" title="Link to this heading"></a></h2>
+<p>Each <code class="docutils literal notranslate"><span class="pre">Paper</span></code> contains structured metadata sections:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">basic</span>          <span class="c1"># title, authors, year, abstract, keywords</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">id</span>             <span class="c1"># DOI, arXiv, PMID, Semantic Scholar ID</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">publication</span>    <span class="c1"># journal, impact factor, volume, issue</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">citation_count</span> <span class="c1"># total + yearly breakdown (2015--2024)</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">url</span>            <span class="c1"># DOI URL, publisher, arXiv, PDFs</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">access</span>         <span class="c1"># open access status, license</span>
+</pre></div>
+</div>
+</section>
+<section id="filtering-and-sorting">
+<h2>Filtering and Sorting<a class="headerlink" href="#filtering-and-sorting" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Criteria-based filtering</span>
+<span class="n">recent</span> <span class="o">=</span> <span class="n">papers</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">year_min</span><span class="o">=</span><span class="mi">2020</span><span class="p">,</span> <span class="n">has_doi</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="n">elite</span> <span class="o">=</span> <span class="n">papers</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">min_impact_factor</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">min_citations</span><span class="o">=</span><span class="mi">500</span><span class="p">)</span>
+
+<span class="c1"># Lambda filtering</span>
+<span class="n">custom</span> <span class="o">=</span> <span class="n">papers</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">p</span><span class="p">:</span> <span class="s2">&quot;EEG&quot;</span> <span class="ow">in</span> <span class="p">(</span><span class="n">p</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">basic</span><span class="o">.</span><span class="n">title</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span><span class="p">))</span>
+
+<span class="c1"># Sorting</span>
+<span class="n">papers</span><span class="o">.</span><span class="n">sort_by</span><span class="p">(</span><span class="s2">&quot;year&quot;</span><span class="p">,</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="n">papers</span><span class="o">.</span><span class="n">sort_by</span><span class="p">(</span><span class="s2">&quot;citation_count&quot;</span><span class="p">,</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+<span class="c1"># Chaining</span>
+<span class="n">top_recent</span> <span class="o">=</span> <span class="n">papers</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">year_min</span><span class="o">=</span><span class="mi">2020</span><span class="p">)</span><span class="o">.</span><span class="n">sort_by</span><span class="p">(</span><span class="s2">&quot;citation_count&quot;</span><span class="p">,</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="project-organization">
+<h2>Project Organization<a class="headerlink" href="#project-organization" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">scholar</span> <span class="o">=</span> <span class="n">Scholar</span><span class="p">(</span><span class="n">project</span><span class="o">=</span><span class="s2">&quot;review_paper&quot;</span><span class="p">)</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">list_projects</span><span class="p">()</span>
+<span class="n">papers</span> <span class="o">=</span> <span class="n">scholar</span><span class="o">.</span><span class="n">load_project</span><span class="p">()</span>
+
+<span class="c1"># Export to multiple formats</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">save_papers_as_bibtex</span><span class="p">(</span><span class="n">papers</span><span class="p">,</span> <span class="s2">&quot;output.bib&quot;</span><span class="p">)</span>
+<span class="n">papers</span><span class="o">.</span><span class="n">to_dataframe</span><span class="p">()</span>  <span class="c1"># pandas DataFrame</span>
+</pre></div>
+</div>
+</section>
+<section id="storage-architecture">
+<h2>Storage Architecture<a class="headerlink" href="#storage-architecture" title="Link to this heading"></a></h2>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>~/.scitex/scholar/library/
++-- MASTER/                     # Centralized master storage
+|   +-- 8DIGIT01/              # Hash-based unique ID from DOI
+|   |   +-- metadata.json
+|   |   +-- paper.pdf
++-- project_name/               # Project-specific symlinks
+    +-- Author-Year-Journal -&gt; ../MASTER/8DIGIT01
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.scholar.html"><span class="doc">scitex.scholar API Reference</span></a> for the auto-generated Python API.</p>
+</section>
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diff --git a/src/scitex/_sphinx_html/modules/security.html b/src/scitex/_sphinx_html/modules/security.html
new file mode 100644
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
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+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/security.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="security-module-stx-security">
+<h1>security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)<a class="headerlink" href="#security-module-stx-security" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.security</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="media.html" class="btn btn-neutral float-left" title="media Module (stx.media)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="ui.html" class="btn btn-neutral float-right" title="ui Module (stx.ui)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/session.html b/src/scitex/_sphinx_html/modules/session.html
new file mode 100644
index 000000000..7f6f2f044
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/session.html
@@ -0,0 +1,890 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Session Decorator (@stx.session) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/session.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="session-decorator-stx-session">
+<h1>Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)<a class="headerlink" href="#session-decorator-stx-session" title="Link to this heading"></a></h1>
+<p>The <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> decorator is the primary entry point for SciTeX
+scripts. It wraps a function to provide automatic CLI generation,
+output directory management, configuration injection, and provenance tracking.</p>
+<section id="basic-usage">
+<h2>Basic Usage<a class="headerlink" href="#basic-usage" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span>
+    <span class="n">data_path</span><span class="o">=</span><span class="s2">&quot;data.csv&quot;</span><span class="p">,</span>       <span class="c1"># CLI: --data-path data.csv</span>
+    <span class="n">threshold</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span>              <span class="c1"># CLI: --threshold 0.7</span>
+    <span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>        <span class="c1"># Auto-injected session config</span>
+    <span class="n">plt</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>           <span class="c1"># Pre-configured matplotlib</span>
+    <span class="n">logger</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>        <span class="c1"># Session logger</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Analyze experimental data.&quot;&quot;&quot;</span>
+    <span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">data_path</span><span class="p">)</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">process</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">threshold</span><span class="p">)</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="s2">&quot;output.csv&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="mi">0</span>  <span class="c1"># exit code (0 = success)</span>
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="n">main</span><span class="p">()</span>  <span class="c1"># No arguments triggers CLI mode</span>
+</pre></div>
+</div>
+<p>Run from the command line:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python<span class="w"> </span>my_script.py<span class="w"> </span>--data-path<span class="w"> </span>experiment.csv<span class="w"> </span>--threshold<span class="w"> </span><span class="m">0</span>.3
+python<span class="w"> </span>my_script.py<span class="w"> </span>--help<span class="w">  </span><span class="c1"># Shows all parameters with defaults</span>
+</pre></div>
+</div>
+</section>
+<section id="how-it-works">
+<h2>How It Works<a class="headerlink" href="#how-it-works" title="Link to this heading"></a></h2>
+<a class="reference internal image-reference" href="_static/session_lifecycle.png"><img alt="Session lifecycle: main() → Parse CLI → Create dir → Load config → Execute → SUCCESS or ERROR" class="align-center" src="_static/session_lifecycle.png" style="width: 60%;" />
+</a>
+<p>When <code class="docutils literal notranslate"><span class="pre">main()</span></code> is called <strong>without arguments</strong>, the decorator:</p>
+<ol class="arabic simple">
+<li><p><strong>Parses CLI arguments</strong> from the function signature (type hints and defaults become <code class="docutils literal notranslate"><span class="pre">argparse</span></code> options)</p></li>
+<li><p><strong>Creates a session directory</strong> under <code class="docutils literal notranslate"><span class="pre">script_out/RUNNING/{session_id}/</span></code></p></li>
+<li><p><strong>Loads configuration</strong> from <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code> files into <code class="docutils literal notranslate"><span class="pre">CONFIG</span></code></p></li>
+<li><p><strong>Injects globals</strong> (<code class="docutils literal notranslate"><span class="pre">CONFIG</span></code>, <code class="docutils literal notranslate"><span class="pre">plt</span></code>, <code class="docutils literal notranslate"><span class="pre">COLORS</span></code>, <code class="docutils literal notranslate"><span class="pre">logger</span></code>, <code class="docutils literal notranslate"><span class="pre">rngg</span></code>) into the function</p></li>
+<li><p><strong>Redirects stdout/stderr</strong> to log files</p></li>
+<li><p><strong>Executes the function</strong> with parsed arguments</p></li>
+<li><p><strong>Moves output</strong> from <code class="docutils literal notranslate"><span class="pre">RUNNING/</span></code> to <code class="docutils literal notranslate"><span class="pre">FINISHED_SUCCESS/</span></code> (or <code class="docutils literal notranslate"><span class="pre">FINISHED_ERROR/</span></code>)</p></li>
+</ol>
+<p>When called <strong>with arguments</strong> (e.g., <code class="docutils literal notranslate"><span class="pre">main(data_path=&quot;x.csv&quot;)</span></code>), the decorator
+is bypassed and the function runs directly – useful for testing and notebooks.</p>
+</section>
+<section id="output-directory-structure">
+<h2>Output Directory Structure<a class="headerlink" href="#output-directory-structure" title="Link to this heading"></a></h2>
+<p>Each run produces a self-contained output directory:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>my_script_out/
++-- FINISHED_SUCCESS/
+|   +-- 2026Y-02M-13D-14h30m15s_Z5MR/
+|       +-- CONFIGS/
+|       |   +-- CONFIG.yaml     # Frozen configuration
+|       |   +-- CONFIG.pkl      # Pickled config
+|       +-- logs/
+|       |   +-- stdout.log      # Captured stdout
+|       |   +-- stderr.log      # Captured stderr
+|       +-- output.csv          # Your saved files
+|       +-- sine.png            # Your saved figures
+|       +-- sine.csv            # Auto-exported figure data
++-- FINISHED_ERROR/
+|   +-- ...                     # Runs that returned non-zero
++-- RUNNING/
+    +-- ...                     # Currently active sessions
+</pre></div>
+</div>
+<p>The session ID format is <code class="docutils literal notranslate"><span class="pre">YYYY-MM-DD-HH:MM:SS_XXXX</span></code> where <code class="docutils literal notranslate"><span class="pre">XXXX</span></code> is
+a random 4-character suffix for uniqueness.</p>
+</section>
+<section id="injected-parameters">
+<h2>Injected Parameters<a class="headerlink" href="#injected-parameters" title="Link to this heading"></a></h2>
+<p>Use <code class="docutils literal notranslate"><span class="pre">stx.INJECTED</span></code> as the default value to receive auto-injected objects:</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 20.0%" />
+<col style="width: 60.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Parameter Name</p></th>
+<th class="head"><p>Type</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">CONFIG</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">DotDict</span></code></p></td>
+<td><p>Session config with <code class="docutils literal notranslate"><span class="pre">ID</span></code>, <code class="docutils literal notranslate"><span class="pre">SDIR_RUN</span></code>, <code class="docutils literal notranslate"><span class="pre">FILE</span></code>, <code class="docutils literal notranslate"><span class="pre">ARGS</span></code>, plus all <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code> values</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">plt</span></code></p></td>
+<td><p>module</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">matplotlib.pyplot</span></code> configured for the session (Agg backend, style settings)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">COLORS</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">DotDict</span></code></p></td>
+<td><p>Color palette for consistent plotting</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">logger</span></code></p></td>
+<td><p>Logger</p></td>
+<td><p>SciTeX logger writing to session log files</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">rngg</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></p></td>
+<td><p>Reproducibility manager (seeds fixed by default)</p></td>
+</tr>
+</tbody>
+</table>
+<p>Only request the parameters you need:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">n</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Minimal example -- only CONFIG injected.&quot;&quot;&quot;</span>
+    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Session ID: </span><span class="si">{</span><span class="n">CONFIG</span><span class="o">.</span><span class="n">ID</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Output dir: </span><span class="si">{</span><span class="n">CONFIG</span><span class="o">.</span><span class="n">SDIR_RUN</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="mi">0</span>
+</pre></div>
+</div>
+</section>
+<section id="config-object">
+<h2>CONFIG Object<a class="headerlink" href="#config-object" title="Link to this heading"></a></h2>
+<p>The injected <code class="docutils literal notranslate"><span class="pre">CONFIG</span></code> is a <code class="docutils literal notranslate"><span class="pre">DotDict</span></code> supporting both dictionary and
+dot-notation access:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">CONFIG</span><span class="p">[</span><span class="s2">&quot;MODEL&quot;</span><span class="p">][</span><span class="s2">&quot;hidden_size&quot;</span><span class="p">]</span>   <span class="c1"># dict-style</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">MODEL</span><span class="o">.</span><span class="n">hidden_size</span>         <span class="c1"># dot-style (equivalent)</span>
+</pre></div>
+</div>
+<p>It contains:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">CONFIG</span><span class="o">.</span><span class="n">ID</span>             <span class="c1"># &quot;2026Y-02M-13D-14h30m15s_Z5MR&quot;</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">PID</span>            <span class="c1"># Process ID</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">FILE</span>           <span class="c1"># Path to the script</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">SDIR_OUT</span>       <span class="c1"># Base output directory</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">SDIR_RUN</span>       <span class="c1"># Current session&#39;s output directory</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">START_DATETIME</span> <span class="c1"># When the session started</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">ARGS</span>           <span class="c1"># Parsed CLI arguments as dict</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">EXIT_STATUS</span>    <span class="c1"># 0 (success), 1 (error), or None</span>
+</pre></div>
+</div>
+<p>Any YAML files in <code class="docutils literal notranslate"><span class="pre">./config/</span></code> are merged into CONFIG:</p>
+<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="c1"># ./config/EXPERIMENT.yaml</span>
+<span class="nt">learning_rate</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">0.001</span>
+<span class="nt">batch_size</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">32</span>
+</pre></div>
+</div>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Accessible as:</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">EXPERIMENT</span><span class="o">.</span><span class="n">learning_rate</span>  <span class="c1"># 0.001</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">EXPERIMENT</span><span class="o">.</span><span class="n">batch_size</span>     <span class="c1"># 32</span>
+</pre></div>
+</div>
+</section>
+<section id="decorator-options">
+<h2>Decorator Options<a class="headerlink" href="#decorator-options" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="nd">@stx</span><span class="o">.</span><span class="n">session</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">agg</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">notify</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">sdir_suffix</span><span class="o">=</span><span class="s2">&quot;v2&quot;</span><span class="p">)</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="o">...</span><span class="p">):</span>
+    <span class="o">...</span>
+</pre></div>
+</div>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 15.0%" />
+<col style="width: 15.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Option</p></th>
+<th class="head"><p>Type</p></th>
+<th class="head"><p>Default</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">verbose</span></code></p></td>
+<td><p>bool</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">False</span></code></p></td>
+<td><p>Enable verbose logging</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">agg</span></code></p></td>
+<td><p>bool</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">True</span></code></p></td>
+<td><p>Use matplotlib Agg backend (set <code class="docutils literal notranslate"><span class="pre">False</span></code> for interactive plots)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">notify</span></code></p></td>
+<td><p>bool</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">False</span></code></p></td>
+<td><p>Send notification when session completes</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">sdir_suffix</span></code></p></td>
+<td><p>str</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">None</span></code></p></td>
+<td><p>Append suffix to output directory name</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="best-practices">
+<h2>Best Practices<a class="headerlink" href="#best-practices" title="Link to this heading"></a></h2>
+<ol class="arabic simple">
+<li><p><strong>One session per script</strong> – each <code class="docutils literal notranslate"><span class="pre">.py</span></code> file should have one <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> function</p></li>
+<li><p><strong>Return 0 for success</strong> – the return value becomes the exit status</p></li>
+<li><p><strong>Save outputs with</strong> <code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code> – files go into the session directory and are provenance-tracked</p></li>
+<li><p><strong>Put config in YAML</strong> – use <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code> instead of hardcoding parameters</p></li>
+<li><p><strong>Use</strong> <code class="docutils literal notranslate"><span class="pre">stx.repro.fix_seeds()</span></code> – already called by default via <code class="docutils literal notranslate"><span class="pre">rngg</span></code></p></li>
+</ol>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.session.html"><span class="doc">scitex.session API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="index.html" class="btn btn-neutral float-left" title="Module Overview" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="io.html" class="btn btn-neutral float-right" title="IO Module (stx.io)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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diff --git a/src/scitex/_sphinx_html/modules/sh.html b/src/scitex/_sphinx_html/modules/sh.html
new file mode 100644
index 000000000..22e39316d
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/sh.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>sh Module (stx.sh) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
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+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="git Module (stx.git)" href="git.html" />
+    <link rel="prev" title="os Module (stx.os)" href="os.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/sh.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="sh-module-stx-sh">
+<h1>sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)<a class="headerlink" href="#sh-module-stx-sh" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.sh</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="os.html" class="btn btn-neutral float-left" title="os Module (stx.os)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="git.html" class="btn btn-neutral float-right" title="git Module (stx.git)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/social.html b/src/scitex/_sphinx_html/modules/social.html
new file mode 100644
index 000000000..90a7cece7
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/social.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>social Module (stx.social) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Gen Module (stx.gen)" href="gen.html" />
+    <link rel="prev" title="notify Module (stx.notify)" href="notify.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/social.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="social-module-stx-social">
+<h1>social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)<a class="headerlink" href="#social-module-stx-social" title="Link to this heading"></a></h1>
+<p>See <a class="reference internal" href="../api/scitex.social.html"><span class="doc">scitex.social API Reference</span></a> for the auto-generated Python API.</p>
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diff --git a/src/scitex/_sphinx_html/modules/stats.html b/src/scitex/_sphinx_html/modules/stats.html
new file mode 100644
index 000000000..7b2b03668
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/stats.html
@@ -0,0 +1,820 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Stats Module (stx.stats) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="PLT Module (stx.plt)" href="plt.html" />
+    <link rel="prev" title="Clew Module (stx.clew)" href="clew.html" /> 
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/stats.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="stats-module-stx-stats">
+<h1>Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)<a class="headerlink" href="#stats-module-stx-stats" title="Link to this heading"></a></h1>
+<p>23 statistical tests with effect sizes, confidence intervals, and
+publication-ready formatting.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="n">g1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">50</span><span class="p">)</span>
+<span class="n">g2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mf">0.5</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">50</span><span class="p">)</span>
+
+<span class="c1"># Run a test</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">)</span>
+
+<span class="c1"># Result is a flat dict with all details</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;statistic&quot;</span><span class="p">])</span>     <span class="c1"># t-statistic</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;pvalue&quot;</span><span class="p">])</span>        <span class="c1"># p-value</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;effect_size&quot;</span><span class="p">])</span>   <span class="c1"># Cohen&#39;s d</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;stars&quot;</span><span class="p">])</span>         <span class="c1"># Significance stars</span>
+
+<span class="c1"># Get as DataFrame or LaTeX</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;dataframe&quot;</span><span class="p">)</span>
+<span class="n">tex</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;latex&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="available-tests">
+<h2>Available Tests<a class="headerlink" href="#available-tests" title="Link to this heading"></a></h2>
+<p><strong>Parametric</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ttest_1samp(data,</span> <span class="pre">popmean)</span></code> – One-sample t-test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ttest_ind(g1,</span> <span class="pre">g2)</span></code> – Independent two-sample t-test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ttest_rel(g1,</span> <span class="pre">g2)</span></code> – Paired t-test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_anova(*groups)</span></code> – One-way ANOVA</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_anova_2way(data,</span> <span class="pre">factor1,</span> <span class="pre">factor2)</span></code> – Two-way ANOVA</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_anova_rm(data,</span> <span class="pre">groups)</span></code> – Repeated measures ANOVA</p></li>
+</ul>
+<p><strong>Non-parametric</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_mannwhitneyu(g1,</span> <span class="pre">g2)</span></code> – Mann-Whitney U test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_wilcoxon(g1,</span> <span class="pre">g2)</span></code> – Wilcoxon signed-rank test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_kruskal(*groups)</span></code> – Kruskal-Wallis H test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_friedman(*groups)</span></code> – Friedman test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_brunner_munzel(g1,</span> <span class="pre">g2)</span></code> – Brunner-Munzel test</p></li>
+</ul>
+<p><strong>Correlation</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_pearson(x,</span> <span class="pre">y)</span></code> – Pearson correlation</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_spearman(x,</span> <span class="pre">y)</span></code> – Spearman rank correlation</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_kendall(x,</span> <span class="pre">y)</span></code> – Kendall tau correlation</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_theilsen(x,</span> <span class="pre">y)</span></code> – Theil-Sen robust regression</p></li>
+</ul>
+<p><strong>Categorical</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_chi2(observed)</span></code> – Chi-squared test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_fisher(table)</span></code> – Fisher’s exact test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_mcnemar(table)</span></code> – McNemar test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_cochran_q(*groups)</span></code> – Cochran’s Q test</p></li>
+</ul>
+<p><strong>Normality</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_shapiro(data)</span></code> – Shapiro-Wilk test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ks_1samp(data)</span></code> – One-sample Kolmogorov-Smirnov test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ks_2samp(x,</span> <span class="pre">y)</span></code> – Two-sample Kolmogorov-Smirnov test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_normality(*samples)</span></code> – Multi-sample normality check</p></li>
+</ul>
+</section>
+<section id="seaborn-style-data-parameter">
+<h2>Seaborn-Style Data Parameter<a class="headerlink" href="#seaborn-style-data-parameter" title="Link to this heading"></a></h2>
+<p>All two-sample and one-sample tests accept an optional <code class="docutils literal notranslate"><span class="pre">data</span></code> parameter
+for DataFrame/CSV column resolution (like seaborn):</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+
+<span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="s2">&quot;experiment.csv&quot;</span><span class="p">)</span>
+
+<span class="c1"># Two-sample: column names as x/y</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="s2">&quot;before&quot;</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="s2">&quot;after&quot;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="n">df</span><span class="p">)</span>
+
+<span class="c1"># One-sample: column name as x</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_shapiro</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="s2">&quot;scores&quot;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="n">df</span><span class="p">)</span>
+
+<span class="c1"># Multi-group: value + group columns</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_anova</span><span class="p">(</span><span class="n">data</span><span class="o">=</span><span class="n">df</span><span class="p">,</span> <span class="n">value_col</span><span class="o">=</span><span class="s2">&quot;score&quot;</span><span class="p">,</span> <span class="n">group_col</span><span class="o">=</span><span class="s2">&quot;treatment&quot;</span><span class="p">)</span>
+
+<span class="c1"># Also works with CSV path</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="s2">&quot;col1&quot;</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="s2">&quot;col2&quot;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="test-recommendation">
+<h2>Test Recommendation<a class="headerlink" href="#test-recommendation" title="Link to this heading"></a></h2>
+<p>Not sure which test to use? Let SciTeX recommend:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">recommendations</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">recommend_tests</span><span class="p">(</span>
+    <span class="n">n_groups</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="n">sample_sizes</span><span class="o">=</span><span class="p">[</span><span class="mi">30</span><span class="p">,</span> <span class="mi">35</span><span class="p">],</span>
+    <span class="n">outcome_type</span><span class="o">=</span><span class="s2">&quot;continuous&quot;</span><span class="p">,</span>
+    <span class="n">paired</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="output-formats">
+<h2>Output Formats<a class="headerlink" href="#output-formats" title="Link to this heading"></a></h2>
+<p>Every test supports <code class="docutils literal notranslate"><span class="pre">return_as</span></code> parameter:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&quot;dict&quot;</span></code> (default) – Returns plain dict with all results</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&quot;dataframe&quot;</span></code> – Returns pandas DataFrame</p></li>
+</ul>
+</section>
+<section id="descriptive-statistics">
+<h2>Descriptive Statistics<a class="headerlink" href="#descriptive-statistics" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">describe</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>                    <span class="c1"># mean, std, median, IQR, etc.</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">effect_sizes</span><span class="o">.</span><span class="n">cohens_d</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">)</span>     <span class="c1"># Cohen&#39;s d</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_normality</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">)</span>            <span class="c1"># Multi-sample normality</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">p_to_stars</span><span class="p">(</span><span class="mf">0.003</span><span class="p">)</span>                 <span class="c1"># &quot;**&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="multiple-comparison-correction">
+<h2>Multiple Comparison Correction<a class="headerlink" href="#multiple-comparison-correction" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">corrected</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">correct_pvalues</span><span class="p">(</span>
+    <span class="p">[</span><span class="mf">0.01</span><span class="p">,</span> <span class="mf">0.03</span><span class="p">,</span> <span class="mf">0.05</span><span class="p">,</span> <span class="mf">0.001</span><span class="p">],</span>
+    <span class="n">method</span><span class="o">=</span><span class="s2">&quot;fdr_bh&quot;</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="post-hoc-tests">
+<h2>Post-hoc Tests<a class="headerlink" href="#post-hoc-tests" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">posthoc_test</span><span class="p">(</span>
+    <span class="p">[</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">,</span> <span class="n">g3</span><span class="p">],</span>
+    <span class="n">group_names</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;Control&quot;</span><span class="p">,</span> <span class="s2">&quot;Treatment A&quot;</span><span class="p">,</span> <span class="s2">&quot;Treatment B&quot;</span><span class="p">],</span>
+    <span class="n">method</span><span class="o">=</span><span class="s2">&quot;tukey&quot;</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.stats.html"><span class="doc">scitex.stats API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="clew.html" class="btn btn-neutral float-left" title="Clew Module (stx.clew)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="plt.html" class="btn btn-neutral float-right" title="PLT Module (stx.plt)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
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+  <hr/>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/modules/str.html b/src/scitex/_sphinx_html/modules/str.html
new file mode 100644
index 000000000..dc2d1604f
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/str.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>str Module (stx.str) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+      <script src="../_static/jquery.js?v=5d32c60e"></script>
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="dict Module (stx.dict)" href="dict.html" />
+    <link rel="prev" title="Introspect Module (stx.introspect)" href="introspect.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
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+
+          
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+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/str.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="str-module-stx-str">
+<h1>str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)<a class="headerlink" href="#str-module-stx-str" title="Link to this heading"></a></h1>
+<p>See <a class="reference internal" href="../api/scitex.str.html"><span class="doc">scitex.str API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="introspect.html" class="btn btn-neutral float-left" title="Introspect Module (stx.introspect)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="dict.html" class="btn btn-neutral float-right" title="dict Module (stx.dict)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/template.html b/src/scitex/_sphinx_html/modules/template.html
new file mode 100644
index 000000000..7f874c284
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/template.html
@@ -0,0 +1,779 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Template Module (stx.template) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="Decorators Module (stx.decorators)" href="decorators.html" />
+    <link rel="prev" title="Gen Module (stx.gen)" href="gen.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
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+</li>
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+<li class="toctree-l3"><a class="reference internal" href="#project-templates">Project Templates</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/template.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="template-module-stx-template">
+<h1>Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)<a class="headerlink" href="#template-module-stx-template" title="Link to this heading"></a></h1>
+<p>Project scaffolding and code snippet templates for quick starts.</p>
+<section id="project-templates">
+<h2>Project Templates<a class="headerlink" href="#project-templates" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Clone a project template</span>
+scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>research<span class="w"> </span>my_project
+scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>pip_project<span class="w"> </span>my_package
+scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>paper<span class="w"> </span>my_paper
+</pre></div>
+</div>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 80.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Template</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">research</span></code></p></td>
+<td><p>Full scientific workflow (scripts, data, docs, config)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">research_minimal</span></code></p></td>
+<td><p>Essential modules only</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">pip_project</span></code></p></td>
+<td><p>Distributable Python package for PyPI</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">singularity</span></code></p></td>
+<td><p>Reproducible containerized environment</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">paper_directory</span></code></p></td>
+<td><p>Academic paper with LaTeX/BibTeX structure</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="git-strategies">
+<h2>Git Strategies<a class="headerlink" href="#git-strategies" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 80.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Strategy</p></th>
+<th class="head"><p>Behavior</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">child</span></code> (default)</p></td>
+<td><p>Fresh git repo, isolated from template</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">parent</span></code></p></td>
+<td><p>Use parent repo if available</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">origin</span></code></p></td>
+<td><p>Preserve template’s git history</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">None</span></code></p></td>
+<td><p>No git initialization</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="code-templates">
+<h2>Code Templates<a class="headerlink" href="#code-templates" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># List available code templates</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>list
+
+<span class="c1"># Get a template</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session<span class="w">           </span><span class="c1"># Full @stx.session script</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session-minimal<span class="w">   </span><span class="c1"># Lightweight session</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session-plot<span class="w">      </span><span class="c1"># Figure-focused session</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session-stats<span class="w">     </span><span class="c1"># Statistics-focused session</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>io<span class="w">                </span><span class="c1"># I/O operations</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>plt<span class="w">               </span><span class="c1"># Plotting patterns</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>stats<span class="w">             </span><span class="c1"># Statistical analysis</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>scholar<span class="w">           </span><span class="c1"># Literature management</span>
+</pre></div>
+</div>
+</section>
+<section id="python-api">
+<h2>Python API<a class="headerlink" href="#python-api" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.template</span><span class="w"> </span><span class="kn">import</span> <span class="n">clone_template</span><span class="p">,</span> <span class="n">get_code_template</span>
+
+<span class="c1"># Clone project</span>
+<span class="n">clone_template</span><span class="p">(</span><span class="s2">&quot;research&quot;</span><span class="p">,</span> <span class="s2">&quot;my_experiment&quot;</span><span class="p">,</span> <span class="n">git_strategy</span><span class="o">=</span><span class="s2">&quot;child&quot;</span><span class="p">)</span>
+
+<span class="c1"># Get code snippet</span>
+<span class="n">code</span> <span class="o">=</span> <span class="n">get_code_template</span><span class="p">(</span><span class="s2">&quot;session&quot;</span><span class="p">,</span> <span class="n">filepath</span><span class="o">=</span><span class="s2">&quot;analyze.py&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.template.html"><span class="doc">scitex.template API Reference</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="gen.html" class="btn btn-neutral float-left" title="Gen Module (stx.gen)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="decorators.html" class="btn btn-neutral float-right" title="Decorators Module (stx.decorators)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+      jQuery(function () {
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diff --git a/src/scitex/_sphinx_html/modules/tex.html b/src/scitex/_sphinx_html/modules/tex.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/tex.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>tex Module (stx.tex) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="bridge Module (stx.bridge)" href="bridge.html" />
+    <link rel="prev" title="msword Module (stx.msword)" href="msword.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
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+<p>See <span class="xref std std-doc">/api/scitex.tex</span> for the auto-generated Python API.</p>
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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diff --git a/src/scitex/_sphinx_html/modules/torch.html b/src/scitex/_sphinx_html/modules/torch.html
new file mode 100644
index 000000000..2cccfe919
--- /dev/null
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@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+  <title>torch Module (stx.torch) &mdash; SciTeX v0.0.0</title>
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
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+    <link rel="next" title="cv Module (stx.cv)" href="cv.html" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
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+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/torch.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="torch-module-stx-torch">
+<h1>torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)<a class="headerlink" href="#torch-module-stx-torch" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.torch</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="nn.html" class="btn btn-neutral float-left" title="NN Module (stx.nn)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="cv.html" class="btn btn-neutral float-right" title="cv Module (stx.cv)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/tunnel.html b/src/scitex/_sphinx_html/modules/tunnel.html
new file mode 100644
index 000000000..cbae132a2
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/tunnel.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>tunnel Module (stx.tunnel) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/tunnel.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="tunnel-module-stx-tunnel">
+<h1>tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)<a class="headerlink" href="#tunnel-module-stx-tunnel" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.tunnel</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="container.html" class="btn btn-neutral float-left" title="container Module (stx.container)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="cli.html" class="btn btn-neutral float-right" title="cli Module (stx.cli)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/types.html b/src/scitex/_sphinx_html/modules/types.html
new file mode 100644
index 000000000..ea14c604e
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/types.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>types Module (stx.types) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="rng Module (stx.rng)" href="rng.html" />
+    <link rel="prev" title="datetime Module (stx.datetime)" href="datetime.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/types.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="types-module-stx-types">
+<h1>types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)<a class="headerlink" href="#types-module-stx-types" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.types</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="datetime.html" class="btn btn-neutral float-left" title="datetime Module (stx.datetime)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="rng.html" class="btn btn-neutral float-right" title="rng Module (stx.rng)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/ui.html b/src/scitex/_sphinx_html/modules/ui.html
new file mode 100644
index 000000000..89c709623
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/ui.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>ui Module (stx.ui) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="dev Module (stx.dev)" href="dev.html" />
+    <link rel="prev" title="security Module (stx.security)" href="security.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
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+      <div class="wy-nav-content">
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+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</li>
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+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/ui.rst" class="fa fa-github"> Edit on GitHub</a>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="ui-module-stx-ui">
+<h1>ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)<a class="headerlink" href="#ui-module-stx-ui" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.ui</span> for the auto-generated Python API.</p>
+</section>
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+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="security.html" class="btn btn-neutral float-left" title="security Module (stx.security)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="dev.html" class="btn btn-neutral float-right" title="dev Module (stx.dev)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
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+  <hr/>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/modules/utils.html b/src/scitex/_sphinx_html/modules/utils.html
new file mode 100644
index 000000000..a309c28ea
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/utils.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>utils Module (stx.utils) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="etc Module (stx.etc)" href="etc.html" />
+    <link rel="prev" title="resource Module (stx.resource)" href="resource.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+        <div class="wy-side-nav-search" >
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+<p>See <span class="xref std std-doc">/api/scitex.utils</span> for the auto-generated Python API.</p>
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/web.html b/src/scitex/_sphinx_html/modules/web.html
new file mode 100644
index 000000000..b2d023c7e
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/web.html
@@ -0,0 +1,681 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>web Module (stx.web) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="msword Module (stx.msword)" href="msword.html" />
+    <link rel="prev" title="etc Module (stx.etc)" href="etc.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/web.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="web-module-stx-web">
+<h1>web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)<a class="headerlink" href="#web-module-stx-web" title="Link to this heading"></a></h1>
+<p>See <span class="xref std std-doc">/api/scitex.web</span> for the auto-generated Python API.</p>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="etc.html" class="btn btn-neutral float-left" title="etc Module (stx.etc)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="msword.html" class="btn btn-neutral float-right" title="msword Module (stx.msword)" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/modules/writer.html b/src/scitex/_sphinx_html/modules/writer.html
new file mode 100644
index 000000000..2563492b4
--- /dev/null
+++ b/src/scitex/_sphinx_html/modules/writer.html
@@ -0,0 +1,825 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Writer Module (stx.writer) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="notebook Module (stx.notebook)" href="notebook.html" />
+    <link rel="prev" title="Scholar Module (stx.scholar)" href="scholar.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Module Overview</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="diagram.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module Overview</a></li>
+      <li class="breadcrumb-item active">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/modules/writer.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="writer-module-stx-writer">
+<h1>Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)<a class="headerlink" href="#writer-module-stx-writer" title="Link to this heading"></a></h1>
+<p>LaTeX manuscript compilation, figure/table management, bibliography
+handling, and IMRAD writing guidelines.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">stx.writer</span></code> wraps the standalone
+<a class="reference external" href="https://github.com/ywatanabe1989/scitex-writer">scitex-writer</a> package.
+Install with: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-writer</span></code>.</p>
+</div>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.writer</span><span class="w"> </span><span class="kn">import</span> <span class="n">Writer</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+
+<span class="n">writer</span> <span class="o">=</span> <span class="n">Writer</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="s2">&quot;my_paper&quot;</span><span class="p">))</span>
+
+<span class="c1"># Compile manuscript → PDF</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_manuscript</span><span class="p">()</span>
+<span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;PDF: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+<span class="c1"># Compile supplementary materials</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_supplementary</span><span class="p">()</span>
+
+<span class="c1"># Compile revision with change tracking</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_revision</span><span class="p">(</span><span class="n">track_changes</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-usage">
+<h2>CLI Usage<a class="headerlink" href="#cli-usage" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Compile</span>
+scitex<span class="w"> </span>writer<span class="w"> </span>compile<span class="w"> </span>manuscript<span class="w"> </span>./my-paper
+scitex<span class="w"> </span>writer<span class="w"> </span>compile<span class="w"> </span>supplementary<span class="w"> </span>./my-paper
+scitex<span class="w"> </span>writer<span class="w"> </span>compile<span class="w"> </span>revision<span class="w"> </span>./my-paper<span class="w"> </span>--track-changes
+
+<span class="c1"># Bibliography</span>
+scitex<span class="w"> </span>writer<span class="w"> </span>bib<span class="w"> </span>list<span class="w"> </span>./my-paper
+scitex<span class="w"> </span>writer<span class="w"> </span>bib<span class="w"> </span>add<span class="w"> </span>./my-paper<span class="w"> </span><span class="s2">&quot;@article{...}&quot;</span>
+
+<span class="c1"># Tables and figures</span>
+scitex<span class="w"> </span>writer<span class="w"> </span>tables<span class="w"> </span>add<span class="w"> </span>./my-paper<span class="w"> </span>data.csv
+scitex<span class="w"> </span>writer<span class="w"> </span>figures<span class="w"> </span>list<span class="w"> </span>./my-paper
+
+<span class="c1"># Writing guidelines</span>
+scitex<span class="w"> </span>writer<span class="w"> </span>guidelines<span class="w"> </span>get<span class="w"> </span>abstract
+</pre></div>
+</div>
+</section>
+<section id="project-structure">
+<h2>Project Structure<a class="headerlink" href="#project-structure" title="Link to this heading"></a></h2>
+<p>A writer project follows this layout:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>my_paper/
++-- 00_shared/
+|   +-- bibliography.bib
+|   +-- figures/
+|   +-- tables/
++-- 01_manuscript/
+|   +-- main.tex
+|   +-- sections/
++-- 02_supplementary/
+|   +-- main.tex
++-- 03_revision/
+    +-- main.tex
+</pre></div>
+</div>
+<p>Create a new project:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>paper<span class="w"> </span>my_paper
+</pre></div>
+</div>
+</section>
+<section id="key-classes">
+<h2>Key Classes<a class="headerlink" href="#key-classes" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">Writer</span></code> – Main entry point for compilation and project management</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code> – Compilation outcome (success, output path, logs)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code> – Document tree for the main manuscript</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code> – Document tree for supplementary materials</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code> – Document tree for revision responses</p></li>
+</ul>
+</section>
+<section id="document-management">
+<h2>Document Management<a class="headerlink" href="#document-management" title="Link to this heading"></a></h2>
+<p><strong>Figures:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Add figure (copies image + creates caption file)</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">add_figure</span><span class="p">(</span><span class="s2">&quot;fig1&quot;</span><span class="p">,</span> <span class="s2">&quot;plot.png&quot;</span><span class="p">,</span> <span class="n">caption</span><span class="o">=</span><span class="s2">&quot;Results&quot;</span><span class="p">)</span>
+
+<span class="c1"># List figures</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">list_figures</span><span class="p">()</span>
+
+<span class="c1"># Convert between formats</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">convert_figure</span><span class="p">(</span><span class="s2">&quot;figure.pdf&quot;</span><span class="p">,</span> <span class="s2">&quot;figure.png&quot;</span><span class="p">,</span> <span class="n">dpi</span><span class="o">=</span><span class="mi">300</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><strong>Tables:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Add table from CSV</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">add_table</span><span class="p">(</span><span class="s2">&quot;tab1&quot;</span><span class="p">,</span> <span class="n">csv_content</span><span class="p">,</span> <span class="n">caption</span><span class="o">=</span><span class="s2">&quot;Demographics&quot;</span><span class="p">)</span>
+
+<span class="c1"># CSV ↔ LaTeX conversion</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">csv_to_latex</span><span class="p">(</span><span class="s2">&quot;data.csv&quot;</span><span class="p">,</span> <span class="s2">&quot;table.tex&quot;</span><span class="p">)</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">latex_to_csv</span><span class="p">(</span><span class="s2">&quot;table.tex&quot;</span><span class="p">,</span> <span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><strong>Bibliography:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Add BibTeX entry</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">add_bibentry</span><span class="p">(</span><span class="s1">&#39;@article{key, title={...}, ...}&#39;</span><span class="p">)</span>
+
+<span class="c1"># Merge multiple .bib files</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">merge_bibfiles</span><span class="p">(</span><span class="n">output_file</span><span class="o">=</span><span class="s2">&quot;bibliography.bib&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="writing-guidelines">
+<h2>Writing Guidelines<a class="headerlink" href="#writing-guidelines" title="Link to this heading"></a></h2>
+<p>IMRAD guidelines for each manuscript section:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>writer<span class="w"> </span>guidelines<span class="w"> </span>list
+scitex<span class="w"> </span>writer<span class="w"> </span>guidelines<span class="w"> </span>get<span class="w"> </span>introduction
+</pre></div>
+</div>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.writer</span><span class="w"> </span><span class="kn">import</span> <span class="n">guidelines</span>
+
+<span class="c1"># Get guideline for a section</span>
+<span class="n">guide</span> <span class="o">=</span> <span class="n">guidelines</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;methods&quot;</span><span class="p">)</span>
+
+<span class="c1"># Build editing prompt: guideline + draft</span>
+<span class="n">prompt</span> <span class="o">=</span> <span class="n">guidelines</span><span class="o">.</span><span class="n">build</span><span class="p">(</span><span class="s2">&quot;discussion&quot;</span><span class="p">,</span> <span class="n">draft_text</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="compilation-options">
+<h2>Compilation Options<a class="headerlink" href="#compilation-options" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_manuscript</span><span class="p">(</span>
+    <span class="n">timeout</span><span class="o">=</span><span class="mi">300</span><span class="p">,</span>        <span class="c1"># Max compilation time (seconds)</span>
+    <span class="n">no_figs</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>      <span class="c1"># Exclude figures</span>
+    <span class="n">no_tables</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>    <span class="c1"># Exclude tables</span>
+    <span class="n">draft</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>        <span class="c1"># Draft mode (fast, lower quality)</span>
+    <span class="n">dark_mode</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>    <span class="c1"># Dark color scheme</span>
+    <span class="n">quiet</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>        <span class="c1"># Suppress output</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+<p>See <a class="reference internal" href="../api/scitex.writer.html"><span class="doc">scitex.writer</span></a> for the auto-generated Python API.</p>
+</section>
+</section>
+
+
+           </div>
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+    </div>
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+  <hr/>
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+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/objects.inv b/src/scitex/_sphinx_html/objects.inv
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diff --git a/src/scitex/_sphinx_html/py-modindex.html b/src/scitex/_sphinx_html/py-modindex.html
new file mode 100644
index 000000000..c9c7ee16e
--- /dev/null
+++ b/src/scitex/_sphinx_html/py-modindex.html
@@ -0,0 +1,1015 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="./">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Python Module Index &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=7026087e"></script>
+      <script src="_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="genindex.html" />
+    <link rel="search" title="Search" href="search.html" />
+ 
+
+
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Python Module Index</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+
+   <h1>Python Module Index</h1>
+
+   <div class="modindex-jumpbox">
+   <a href="#cap-s"><strong>s</strong></a>
+   </div>
+
+   <table class="indextable modindextable">
+     <tr class="pcap"><td></td><td>&#160;</td><td></td></tr>
+     <tr class="cap" id="cap-s"><td></td><td>
+       <strong>s</strong></td><td></td></tr>
+     <tr>
+       <td><img src="_static/minus.png" class="toggler"
+              id="toggle-1" style="display: none" alt="-" /></td>
+       <td>
+       <code class="xref">scitex</code></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/ai.html#module-scitex.ai"><code class="xref">scitex.ai</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/app.html#module-scitex.app"><code class="xref">scitex.app</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/audio.html#module-scitex.audio"><code class="xref">scitex.audio</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/audit.html#module-scitex.audit"><code class="xref">scitex.audit</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/benchmark.html#module-scitex.benchmark"><code class="xref">scitex.benchmark</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/bridge.html#module-scitex.bridge"><code class="xref">scitex.bridge</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/browser.html#module-scitex.browser"><code class="xref">scitex.browser</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/canvas.html#module-scitex.canvas"><code class="xref">scitex.canvas</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/capture.html#module-scitex.capture"><code class="xref">scitex.capture</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/clew.html#module-scitex.clew"><code class="xref">scitex.clew</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/cli.html#module-scitex.cli"><code class="xref">scitex.cli</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/cloud.html#module-scitex.cloud"><code class="xref">scitex.cloud</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/compat.html#module-scitex.compat"><code class="xref">scitex.compat</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/config.html#module-scitex.config"><code class="xref">scitex.config</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/container.html#module-scitex.container"><code class="xref">scitex.container</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/context.html#module-scitex.context"><code class="xref">scitex.context</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/cv.html#module-scitex.cv"><code class="xref">scitex.cv</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/dataset.html#module-scitex.dataset"><code class="xref">scitex.dataset</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/datetime.html#module-scitex.datetime"><code class="xref">scitex.datetime</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/db.html#module-scitex.db"><code class="xref">scitex.db</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/decorators.html#module-scitex.decorators"><code class="xref">scitex.decorators</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/dev.html#module-scitex.dev"><code class="xref">scitex.dev</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/diagram.html#module-scitex.diagram"><code class="xref">scitex.diagram</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/dict.html#module-scitex.dict"><code class="xref">scitex.dict</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/dsp.html#module-scitex.dsp"><code class="xref">scitex.dsp</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/etc.html#module-scitex.etc"><code class="xref">scitex.etc</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/events.html#module-scitex.events"><code class="xref">scitex.events</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/gen.html#module-scitex.gen"><code class="xref">scitex.gen</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/gists.html#module-scitex.gists"><code class="xref">scitex.gists</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/git.html#module-scitex.git"><code class="xref">scitex.git</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/introspect.html#module-scitex.introspect"><code class="xref">scitex.introspect</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/io.html#module-scitex.io"><code class="xref">scitex.io</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/linalg.html#module-scitex.linalg"><code class="xref">scitex.linalg</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/logging.html#module-scitex.logging"><code class="xref">scitex.logging</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
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+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
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+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/msword.html#module-scitex.msword"><code class="xref">scitex.msword</code></a></td><td>
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+       <td></td>
+       <td>&#160;&#160;&#160;
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+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/notebook.html#module-scitex.notebook"><code class="xref">scitex.notebook</code></a></td><td>
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+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
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+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/os.html#module-scitex.os"><code class="xref">scitex.os</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/parallel.html#module-scitex.parallel"><code class="xref">scitex.parallel</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/path.html#module-scitex.path"><code class="xref">scitex.path</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
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+       <td></td>
+       <td>&#160;&#160;&#160;
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+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/project.html#module-scitex.project"><code class="xref">scitex.project</code></a></td><td>
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+       <td>&#160;&#160;&#160;
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+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
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+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/rng.html#module-scitex.rng"><code class="xref">scitex.rng</code></a></td><td>
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+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
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+       <em></em></td></tr>
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+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/scholar.html#module-scitex.scholar"><code class="xref">scitex.scholar</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/security.html#module-scitex.security"><code class="xref">scitex.security</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/session.html#module-scitex.session"><code class="xref">scitex.session</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/sh.html#module-scitex.sh"><code class="xref">scitex.sh</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/social.html#module-scitex.social"><code class="xref">scitex.social</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/stats.html#module-scitex.stats"><code class="xref">scitex.stats</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/str.html#module-scitex.str"><code class="xref">scitex.str</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/template.html#module-scitex.template"><code class="xref">scitex.template</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/tex.html#module-scitex.tex"><code class="xref">scitex.tex</code></a></td><td>
+       <em></em></td></tr>
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+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/torch.html#module-scitex.torch"><code class="xref">scitex.torch</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/tunnel.html#module-scitex.tunnel"><code class="xref">scitex.tunnel</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/types.html#module-scitex.types"><code class="xref">scitex.types</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/ui.html#module-scitex.ui"><code class="xref">scitex.ui</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/web.html#module-scitex.web"><code class="xref">scitex.web</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/api/writer.html#module-scitex.writer"><code class="xref">scitex.writer</code></a></td><td>
+       <em></em></td></tr>
+   </table>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/quickstart.html b/src/scitex/_sphinx_html/quickstart.html
new file mode 100644
index 000000000..d2948cf8e
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+++ b/src/scitex/_sphinx_html/quickstart.html
@@ -0,0 +1,907 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="./">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Quick Start &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=7026087e"></script>
+      <script src="_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="genindex.html" />
+    <link rel="search" title="Search" href="search.html" />
+    <link rel="next" title="Core Concepts" href="core_concepts.html" />
+    <link rel="prev" title="Installation" href="installation.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Quick Start</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/quickstart.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="quick-start">
+<h1>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h1>
+<section id="three-interfaces">
+<h2>Three Interfaces<a class="headerlink" href="#three-interfaces" title="Link to this heading"></a></h2>
+<p>SciTeX exposes the same capabilities through three interfaces:
+Python API, CLI commands, and MCP tools for AI agents.</p>
+<section id="python-api">
+<h3>Python API<a class="headerlink" href="#python-api" title="Link to this heading"></a></h3>
+<p><code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> – Reproducible Experiment Tracking</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">filename</span><span class="o">=</span><span class="s2">&quot;demo.jpg&quot;</span><span class="p">):</span>
+    <span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+    <span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">t</span><span class="p">,</span> <span class="n">signal</span><span class="p">)</span>
+    <span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Time (s)&quot;</span><span class="p">,</span> <span class="s2">&quot;Amplitude&quot;</span><span class="p">,</span> <span class="s2">&quot;Title&quot;</span><span class="p">)</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="n">filename</span><span class="p">)</span>
+    <span class="k">return</span> <span class="mi">0</span>
+</pre></div>
+</div>
+<p>Output:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>script_out/FINISHED_SUCCESS/2025-01-08_12-30-00_AbC1/
+|-- demo.jpg                    # Figure with embedded metadata
+|-- demo.csv                    # Auto-exported plot data
+|-- CONFIGS/CONFIG.yaml         # Reproducible parameters
++-- logs/{stdout,stderr}.log    # Execution logs
+</pre></div>
+</div>
+<p><code class="docutils literal notranslate"><span class="pre">stx.io</span></code> – Universal File I/O (30+ formats)</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="s2">&quot;output.csv&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;output.jpg&quot;</span><span class="p">)</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;output.csv&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><code class="docutils literal notranslate"><span class="pre">stx.stats</span></code> – Publication-Ready Statistics (23 tests)</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">group1</span><span class="p">,</span> <span class="n">group2</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;dataframe&quot;</span><span class="p">)</span>
+<span class="c1"># Includes: p-value, effect size, CI, normality check, power</span>
+</pre></div>
+</div>
+<p><code class="docutils literal notranslate"><span class="pre">stx.plt</span></code> – Publication-Ready Figures</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s2">&quot;signal&quot;</span><span class="p">)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Time (s)&quot;</span><span class="p">,</span> <span class="s2">&quot;Amplitude&quot;</span><span class="p">,</span> <span class="s2">&quot;Sine Wave&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;plot.png&quot;</span><span class="p">)</span>
+<span class="c1"># Creates: plot.png + plot.csv + plot.yaml (recipe for reproduction)</span>
+</pre></div>
+</div>
+<p><code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code> – Literature Management</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Enrich BibTeX with abstracts, DOIs, citation counts</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">scholar</span><span class="o">.</span><span class="n">enrich_bibtex</span><span class="p">(</span><span class="s2">&quot;refs.bib&quot;</span><span class="p">,</span> <span class="n">add_abstracts</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-commands">
+<h3>CLI Commands<a class="headerlink" href="#cli-commands" title="Link to this heading"></a></h3>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>--help-recursive<span class="w">              </span><span class="c1"># Show all commands</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>fetch<span class="w"> </span><span class="s2">&quot;10.1038/...&quot;</span><span class="w">   </span><span class="c1"># Download paper by DOI</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>bibtex<span class="w"> </span>refs.bib<span class="w">       </span><span class="c1"># Enrich BibTeX</span>
+scitex<span class="w"> </span>stats<span class="w"> </span>recommend<span class="w">               </span><span class="c1"># Suggest statistical tests</span>
+scitex<span class="w"> </span>audio<span class="w"> </span>speak<span class="w"> </span><span class="s2">&quot;Done&quot;</span><span class="w">            </span><span class="c1"># Text-to-speech</span>
+scitex<span class="w"> </span>capture<span class="w"> </span>snap<span class="w">                  </span><span class="c1"># Screenshot</span>
+</pre></div>
+</div>
+</section>
+<section id="mcp-tools-120-tools-for-ai-agents">
+<h3>MCP Tools (120+ tools for AI agents)<a class="headerlink" href="#mcp-tools-120-tools-for-ai-agents" title="Link to this heading"></a></h3>
+<p>Turn AI agents into autonomous scientific researchers.</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 10.0%" />
+<col style="width: 70.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Category</p></th>
+<th class="head"><p>Tools</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p>writer</p></td>
+<td><p>28</p></td>
+<td><p>LaTeX manuscript compilation</p></td>
+</tr>
+<tr class="row-odd"><td><p>scholar</p></td>
+<td><p>23</p></td>
+<td><p>PDF download, metadata enrichment</p></td>
+</tr>
+<tr class="row-even"><td><p>capture</p></td>
+<td><p>12</p></td>
+<td><p>Screen monitoring and capture</p></td>
+</tr>
+<tr class="row-odd"><td><p>introspect</p></td>
+<td><p>12</p></td>
+<td><p>Python code introspection</p></td>
+</tr>
+<tr class="row-even"><td><p>audio</p></td>
+<td><p>10</p></td>
+<td><p>Text-to-speech, audio playback</p></td>
+</tr>
+<tr class="row-odd"><td><p>stats</p></td>
+<td><p>10</p></td>
+<td><p>Automated statistical testing</p></td>
+</tr>
+<tr class="row-even"><td><p>plt</p></td>
+<td><p>9</p></td>
+<td><p>Matplotlib figure creation</p></td>
+</tr>
+<tr class="row-odd"><td><p>diagram</p></td>
+<td><p>9</p></td>
+<td><p>Mermaid and Graphviz diagrams</p></td>
+</tr>
+<tr class="row-even"><td><p>dataset</p></td>
+<td><p>8</p></td>
+<td><p>Neuroimaging/physiology datasets</p></td>
+</tr>
+<tr class="row-odd"><td><p>social</p></td>
+<td><p>7</p></td>
+<td><p>Social media posting</p></td>
+</tr>
+<tr class="row-even"><td><p>canvas</p></td>
+<td><p>7</p></td>
+<td><p>Figure composition</p></td>
+</tr>
+<tr class="row-odd"><td><p>template</p></td>
+<td><p>6</p></td>
+<td><p>Project scaffolding</p></td>
+</tr>
+<tr class="row-even"><td><p>verify</p></td>
+<td><p>6</p></td>
+<td><p>Reproducibility verification</p></td>
+</tr>
+<tr class="row-odd"><td><p>dev</p></td>
+<td><p>6</p></td>
+<td><p>Version checking</p></td>
+</tr>
+<tr class="row-even"><td><p>ui</p></td>
+<td><p>5</p></td>
+<td><p>Notifications</p></td>
+</tr>
+<tr class="row-odd"><td><p>linter</p></td>
+<td><p>3</p></td>
+<td><p>Code pattern checking</p></td>
+</tr>
+</tbody>
+</table>
+<p><strong>Claude Code Setup</strong> — add <code class="docutils literal notranslate"><span class="pre">.mcp.json</span></code> to your project root. Use <code class="docutils literal notranslate"><span class="pre">SCITEX_ENV_SRC</span></code>
+to load all configuration from a <code class="docutils literal notranslate"><span class="pre">.src</span></code> file — this keeps <code class="docutils literal notranslate"><span class="pre">.mcp.json</span></code> static
+across environments:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span>
+<span class="w">  </span><span class="nt">&quot;mcpServers&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span>
+<span class="w">    </span><span class="nt">&quot;scitex&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span>
+<span class="w">      </span><span class="nt">&quot;command&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;scitex&quot;</span><span class="p">,</span>
+<span class="w">      </span><span class="nt">&quot;args&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span><span class="s2">&quot;mcp&quot;</span><span class="p">,</span><span class="w"> </span><span class="s2">&quot;start&quot;</span><span class="p">],</span>
+<span class="w">      </span><span class="nt">&quot;env&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span>
+<span class="w">        </span><span class="nt">&quot;SCITEX_ENV_SRC&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;${SCITEX_ENV_SRC}&quot;</span>
+<span class="w">      </span><span class="p">}</span>
+<span class="w">    </span><span class="p">}</span>
+<span class="w">  </span><span class="p">}</span>
+<span class="p">}</span>
+</pre></div>
+</div>
+<p>Switch environments via your shell profile:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Local machine</span>
+<span class="nb">export</span><span class="w"> </span><span class="nv">SCITEX_ENV_SRC</span><span class="o">=</span>~/.scitex/scitex/local.src
+
+<span class="c1"># Remote server</span>
+<span class="nb">export</span><span class="w"> </span><span class="nv">SCITEX_ENV_SRC</span><span class="o">=</span>~/.scitex/scitex/remote.src
+</pre></div>
+</div>
+<p>Generate a template <code class="docutils literal notranslate"><span class="pre">.src</span></code> file:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>env-template<span class="w"> </span>-o<span class="w"> </span>~/.scitex/scitex/local.src
+</pre></div>
+</div>
+<p>Or install globally:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>mcp<span class="w"> </span>install
+</pre></div>
+</div>
+</section>
+</section>
+<section id="complete-example">
+<h2>Complete Example<a class="headerlink" href="#complete-example" title="Link to this heading"></a></h2>
+<p>A typical research script combining session, I/O, plotting, and statistics:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span>
+    <span class="n">n</span><span class="o">=</span><span class="mi">200</span><span class="p">,</span>
+    <span class="n">noise</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span>
+    <span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>
+    <span class="n">plt</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>
+    <span class="n">logger</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Analyze noisy sine wave.&quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+    <span class="c1"># Generate data</span>
+    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">4</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span><span class="p">,</span> <span class="n">n</span><span class="p">)</span>
+    <span class="n">y_clean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+    <span class="n">y_noisy</span> <span class="o">=</span> <span class="n">y_clean</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">noise</span><span class="p">,</span> <span class="n">n</span><span class="p">)</span>
+
+    <span class="c1"># Save raw data</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">({</span><span class="s2">&quot;x&quot;</span><span class="p">:</span> <span class="n">x</span><span class="p">,</span> <span class="s2">&quot;y_clean&quot;</span><span class="p">:</span> <span class="n">y_clean</span><span class="p">,</span> <span class="s2">&quot;y_noisy&quot;</span><span class="p">:</span> <span class="n">y_noisy</span><span class="p">},</span> <span class="s2">&quot;data.npz&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Visualize</span>
+    <span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+    <span class="n">ax</span><span class="o">.</span><span class="n">plot_scatter</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y_noisy</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.3</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s2">&quot;Noisy&quot;</span><span class="p">)</span>
+    <span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y_clean</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s2">&quot;red&quot;</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s2">&quot;True&quot;</span><span class="p">)</span>
+    <span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="s2">&quot;y&quot;</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;Sine Wave (noise=</span><span class="si">{</span><span class="n">noise</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;sine.png&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Correlation between noisy and clean</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_pearson</span><span class="p">(</span><span class="n">y_clean</span><span class="p">,</span> <span class="n">y_noisy</span><span class="p">)</span>
+    <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Pearson r=</span><span class="si">{</span><span class="n">result</span><span class="p">[</span><span class="s1">&#39;effect_size&#39;</span><span class="p">]</span><span class="si">:</span><span class="s2">.3f</span><span class="si">}</span><span class="s2">, p=</span><span class="si">{</span><span class="n">result</span><span class="p">[</span><span class="s1">&#39;pvalue&#39;</span><span class="p">]</span><span class="si">:</span><span class="s2">.1e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Save summary</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">({</span><span class="s2">&quot;r&quot;</span><span class="p">:</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;effect_size&quot;</span><span class="p">],</span> <span class="s2">&quot;p&quot;</span><span class="p">:</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;pvalue&quot;</span><span class="p">]},</span> <span class="s2">&quot;stats.yaml&quot;</span><span class="p">)</span>
+
+    <span class="k">return</span> <span class="mi">0</span>
+</pre></div>
+</div>
+</section>
+<section id="next-steps">
+<h2>Next Steps<a class="headerlink" href="#next-steps" title="Link to this heading"></a></h2>
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+<li class="toctree-l2"><a class="reference internal" href="modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/searchindex.js b/src/scitex/_sphinx_html/searchindex.js
new file mode 100644
index 000000000..5a6437809
--- /dev/null
+++ b/src/scitex/_sphinx_html/searchindex.js
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/ai.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="ai-module-stx-ai">
+<h1>AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)<a class="headerlink" href="#ai-module-stx-ai" title="Link to this heading"></a></h1>
+<p>Machine learning utilities for training, classification, and metrics
+with PyTorch and scikit-learn.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Training utilities</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">scitex.ai</span><span class="w"> </span><span class="kn">import</span> <span class="n">LearningCurveLogger</span><span class="p">,</span> <span class="n">EarlyStopping</span>
+
+<span class="n">logger</span> <span class="o">=</span> <span class="n">LearningCurveLogger</span><span class="p">()</span>
+<span class="n">stopper</span> <span class="o">=</span> <span class="n">EarlyStopping</span><span class="p">(</span><span class="n">patience</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">direction</span><span class="o">=</span><span class="s2">&quot;minimize&quot;</span><span class="p">)</span>
+
+<span class="k">for</span> <span class="n">epoch</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
+    <span class="c1"># ... training loop ...</span>
+    <span class="n">logger</span><span class="p">({</span><span class="s2">&quot;loss&quot;</span><span class="p">:</span> <span class="n">loss</span><span class="p">,</span> <span class="s2">&quot;acc&quot;</span><span class="p">:</span> <span class="n">acc</span><span class="p">},</span> <span class="n">step</span><span class="o">=</span><span class="s2">&quot;Training&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">stopper</span><span class="p">(</span><span class="n">val_loss</span><span class="p">,</span> <span class="p">{</span><span class="s2">&quot;model&quot;</span><span class="p">:</span> <span class="n">model_path</span><span class="p">},</span> <span class="n">epoch</span><span class="p">):</span>
+        <span class="k">break</span>
+
+<span class="n">logger</span><span class="o">.</span><span class="n">plot_learning_curves</span><span class="p">(</span><span class="n">spath</span><span class="o">=</span><span class="s2">&quot;curves.png&quot;</span><span class="p">)</span>
+
+<span class="c1"># Classification</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">scitex.ai</span><span class="w"> </span><span class="kn">import</span> <span class="n">ClassificationReporter</span><span class="p">,</span> <span class="n">Classifier</span>
+
+<span class="n">clf</span> <span class="o">=</span> <span class="n">Classifier</span><span class="p">()(</span><span class="s2">&quot;SVC&quot;</span><span class="p">)</span>
+<span class="n">reporter</span> <span class="o">=</span> <span class="n">ClassificationReporter</span><span class="p">(</span><span class="n">output_dir</span><span class="o">=</span><span class="s2">&quot;./results&quot;</span><span class="p">)</span>
+<span class="n">reporter</span><span class="o">.</span><span class="n">calculate_metrics</span><span class="p">(</span><span class="n">y_true</span><span class="p">,</span> <span class="n">y_pred</span><span class="p">,</span> <span class="n">y_proba</span><span class="p">)</span>
+<span class="n">reporter</span><span class="o">.</span><span class="n">save_summary</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="training">
+<h2>Training<a class="headerlink" href="#training" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">LearningCurveLogger</span></code> – Track and visualize training/validation/test metrics across epochs</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">EarlyStopping</span></code> – Monitor validation metrics and stop when improvement plateaus</p></li>
+</ul>
+</section>
+<section id="classification">
+<h2>Classification<a class="headerlink" href="#classification" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">ClassificationReporter</span></code> – Unified reporter for single/multi-task classification (balanced accuracy, MCC, ROC-AUC, confusion matrices)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">Classifier</span></code> – Factory for scikit-learn classifiers (SVC, KNN, Logistic Regression, AdaBoost, …)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">CrossValidationExperiment</span></code> – Cross-validation framework</p></li>
+</ul>
+</section>
+<section id="metrics">
+<h2>Metrics<a class="headerlink" href="#metrics" title="Link to this heading"></a></h2>
+<p>Standardized <code class="docutils literal notranslate"><span class="pre">calc_*</span></code> functions:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_bacc</span></code> – Balanced accuracy</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_mcc</span></code> – Matthews Correlation Coefficient</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_conf_mat</span></code> – Confusion matrix</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_roc_auc</span></code> – ROC-AUC score</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_pre_rec_auc</span></code> – Precision-Recall AUC</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">calc_feature_importance</span></code> – Feature importance scores</p></li>
+</ul>
+</section>
+<section id="visualization">
+<h2>Visualization<a class="headerlink" href="#visualization" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">plot_learning_curve</span></code> – Training/validation curves</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx_conf_mat</span></code> – Confusion matrix heatmap</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">plot_roc_curve</span></code> – ROC curve</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">plot_pre_rec_curve</span></code> – Precision-Recall curve</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">plot_feature_importance</span></code> – Feature importance bar plots</p></li>
+</ul>
+</section>
+<section id="other">
+<h2>Other<a class="headerlink" href="#other" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">MultiTaskLoss</span></code> – Multi-task learning loss weighting</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_optimizer</span></code> / <code class="docutils literal notranslate"><span class="pre">set_optimizer</span></code> – Optimizer management</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">GenAI</span></code> – Generative AI wrapper (lazy-loaded)</p></li>
+<li><p>Clustering: <code class="docutils literal notranslate"><span class="pre">pca</span></code>, <code class="docutils literal notranslate"><span class="pre">umap</span></code></p></li>
+</ul>
+</section>
+<section id="module-scitex.ai">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.ai" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
+
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/app.html b/src/scitex/_sphinx_html/source/api/app.html
new file mode 100644
index 000000000..af7ae4b3b
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/app.html
@@ -0,0 +1,1094 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>App Module (stx.app) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">App Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/app.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="app-module-stx-app">
+<h1>App Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)<a class="headerlink" href="#app-module-stx-app" title="Link to this heading"></a></h1>
+<p>Runtime SDK for SciTeX applications. Provides a unified interface for
+file storage, configuration, and lifecycle management that works
+identically in local and cloud environments.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">stx.app</span></code> delegates to the standalone
+<a class="reference external" href="https://github.com/ywatanabe1989/scitex-app">scitex-app</a> package.
+Install with: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-app</span></code>.</p>
+</div>
+<section id="overview">
+<h2>Overview<a class="headerlink" href="#overview" title="Link to this heading"></a></h2>
+<p>SciTeX applications are self-contained scientific tools that can run
+locally or on the SciTeX cloud platform. The <code class="docutils literal notranslate"><span class="pre">stx.app</span></code> module
+provides the runtime SDK that each application uses to interact with
+its environment.</p>
+</section>
+<section id="quick-start">
+<h2>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Get current application info</span>
+<span class="n">info</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">get_info</span><span class="p">()</span>
+
+<span class="c1"># Access application preferences</span>
+<span class="n">prefs</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">get_prefs</span><span class="p">()</span>
+
+<span class="c1"># Check dependencies</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">check_deps</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="key-features">
+<h2>Key Features<a class="headerlink" href="#key-features" title="Link to this heading"></a></h2>
+<dl>
+<dt><strong>Unified File Storage</strong></dt><dd><p>Read and write files through a single API that abstracts local
+filesystem and cloud storage.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># These work identically locally and in the cloud</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">write_file</span><span class="p">(</span><span class="s2">&quot;results/output.csv&quot;</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span>
+<span class="n">content</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">read_file</span><span class="p">(</span><span class="s2">&quot;config/settings.yaml&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</dd>
+<dt><strong>Configuration Management</strong></dt><dd><p>Application preferences are stored in a standard location and
+accessible via dot-notation.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">prefs</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">get_prefs</span><span class="p">()</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">prefs</span><span class="o">.</span><span class="n">theme</span><span class="p">)</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">prefs</span><span class="o">.</span><span class="n">default_format</span><span class="p">)</span>
+
+<span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">set_prefs</span><span class="p">(</span><span class="n">theme</span><span class="o">=</span><span class="s2">&quot;dark&quot;</span><span class="p">,</span> <span class="n">default_format</span><span class="o">=</span><span class="s2">&quot;pdf&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</dd>
+<dt><strong>Application Lifecycle</strong></dt><dd><p>Query and manage the running application.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">info</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">get_info</span><span class="p">()</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">info</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">info</span><span class="o">.</span><span class="n">version</span><span class="p">)</span>
+
+<span class="n">current</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">get_current</span><span class="p">()</span>    <span class="c1"># Currently active app</span>
+</pre></div>
+</div>
+</dd>
+<dt><strong>Dependency Checking</strong></dt><dd><p>Verify that all required packages are available.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">missing</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">check_deps</span><span class="p">()</span>
+<span class="k">if</span> <span class="n">missing</span><span class="p">:</span>
+    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Missing: </span><span class="si">{</span><span class="n">missing</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</dd>
+</dl>
+</section>
+<section id="creating-an-application">
+<h2>Creating an Application<a class="headerlink" href="#creating-an-application" title="Link to this heading"></a></h2>
+<p>Scaffold a new SciTeX application from a template:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>app<span class="w"> </span>my_tool
+</pre></div>
+</div>
+<p>This creates a project with bridge-init configuration, MountPoint
+definitions, and EventBus integration pre-configured.</p>
+</section>
+<section id="module-scitex.app">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.app" title="Link to this heading"></a></h2>
+<p>scitex-app — Write-once interface for local + cloud SciTeX apps.</p>
+<p>Standalone package. Zero dependencies (pure stdlib).
+When used with scitex, integration is automatic via scitex.app.</p>
+<p>Public API (3 functions):</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_app.sdk</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_files</span><span class="p">,</span> <span class="n">register_backend</span><span class="p">,</span> <span class="n">FilesBackend</span>
+
+<span class="c1"># Get a file backend (auto-detects local vs cloud)</span>
+<span class="n">files</span> <span class="o">=</span> <span class="n">get_files</span><span class="p">(</span><span class="s2">&quot;./project&quot;</span><span class="p">)</span>
+
+<span class="c1"># Read/write files</span>
+<span class="n">content</span> <span class="o">=</span> <span class="n">files</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="s2">&quot;data/config.yaml&quot;</span><span class="p">)</span>
+<span class="n">files</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">&quot;output/result.csv&quot;</span><span class="p">,</span> <span class="n">csv_text</span><span class="p">)</span>
+
+<span class="c1"># Register a custom backend</span>
+<span class="n">register_backend</span><span class="p">(</span><span class="s2">&quot;s3&quot;</span><span class="p">,</span> <span class="n">my_s3_factory</span><span class="p">)</span>
+</pre></div>
+</div>
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.app.FilesBackend">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">FilesBackend</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_protocol.html#FilesBackend"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.FilesBackend" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Protocol" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Protocol</span></code></a></p>
+<p>File storage backend protocol.</p>
+<p>Implementations must provide these 7 methods.
+Uses <code class="docutils literal notranslate"><span class="pre">typing.Protocol</span></code> for structural subtyping — backends
+just implement the methods, no inheritance required.</p>
+<section id="implementations">
+<h3>Implementations<a class="headerlink" href="#implementations" title="Link to this heading"></a></h3>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">FileSystemBackend</span></code> — local pathlib (ships with scitex-app)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">CloudFilesBackend</span></code> — HTTP via scitex_cloud (provided at runtime)</p></li>
+</ul>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.app.FilesBackend.read">
+<span class="sig-name descname"><span class="pre">read</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">binary</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_protocol.html#FilesBackend.read"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.FilesBackend.read" title="Link to this definition"></a></dt>
+<dd><p>Read file content.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Relative path within the backend’s namespace.</p></li>
+<li><p><strong>binary</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, return bytes; otherwise return str.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If the file does not exist.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#bytes" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bytes</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.app.FilesBackend.write">
+<span class="sig-name descname"><span class="pre">write</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">content</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_protocol.html#FilesBackend.write"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.FilesBackend.write" title="Link to this definition"></a></dt>
+<dd><p>Write content to a file, creating parent dirs as needed.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Relative path within the backend’s namespace.</p></li>
+<li><p><strong>content</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#bytes" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bytes</span></code></a>]</span>) – Text or binary content.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.app.FilesBackend.list">
+<span class="sig-name descname"><span class="pre">list</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">directory</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">extensions</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_protocol.html#FilesBackend.list"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.FilesBackend.list" title="Link to this definition"></a></dt>
+<dd><p>List file paths in a directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>directory</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Relative directory path (”” = root).</p></li>
+<li><p><strong>extensions</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – Filter by extension, e.g. [“.yaml”, “.png”].</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Relative file paths.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.app.FilesBackend.exists">
+<span class="sig-name descname"><span class="pre">exists</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_protocol.html#FilesBackend.exists"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.FilesBackend.exists" title="Link to this definition"></a></dt>
+<dd><p>Check if a file exists.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.app.FilesBackend.delete">
+<span class="sig-name descname"><span class="pre">delete</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_protocol.html#FilesBackend.delete"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.FilesBackend.delete" title="Link to this definition"></a></dt>
+<dd><p>Delete a file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Raises<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If the file does not exist.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.app.FilesBackend.rename">
+<span class="sig-name descname"><span class="pre">rename</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">old_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">new_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_protocol.html#FilesBackend.rename"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.FilesBackend.rename" title="Link to this definition"></a></dt>
+<dd><p>Rename/move a file within the namespace.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Raises<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If old_path does not exist.</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileExistsError" title="(in Python v3.14)"><strong>FileExistsError</strong></a> – If new_path already exists.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.app.FilesBackend.copy">
+<span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dest_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_protocol.html#FilesBackend.copy"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.FilesBackend.copy" title="Link to this definition"></a></dt>
+<dd><p>Copy a file within the namespace.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Raises<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If src_path does not exist.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.get_files">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">get_files</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">backend</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk.html#get_files"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.get_files" title="Link to this definition"></a></dt>
+<dd><p>Get a files backend instance.</p>
+<p>Auto-detection logic:</p>
+<ol class="arabic simple">
+<li><p>If <code class="docutils literal notranslate"><span class="pre">backend</span></code> is specified, use that.</p></li>
+<li><p>If <code class="docutils literal notranslate"><span class="pre">SCITEX_API_TOKEN</span></code> env var is set and “cloud” backend
+is registered, use cloud.</p></li>
+<li><p>Otherwise, use filesystem (default).</p></li>
+</ol>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>root</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Root directory for filesystem backend. Defaults to cwd.</p></li>
+<li><p><strong>backend</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Explicit backend name. If None, auto-detected.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>A backend instance.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.app.FilesBackend" title="scitex_app.sdk._protocol.FilesBackend"><code class="xref py py-class docutils literal notranslate"><span class="pre">FilesBackend</span></code></a></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#KeyError" title="(in Python v3.14)"><strong>KeyError</strong></a> – If the requested backend is not registered.</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.register_backend">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">register_backend</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">factory</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk.html#register_backend"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.register_backend" title="Link to this definition"></a></dt>
+<dd><p>Register a files backend factory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Backend identifier (e.g., “cloud”, “s3”).</p></li>
+<li><p><strong>factory</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/constants.html#Ellipsis" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">...</span></code></a>, <a class="reference internal" href="#scitex.app.FilesBackend" title="scitex_app.sdk._protocol.FilesBackend"><code class="xref py py-class docutils literal notranslate"><span class="pre">FilesBackend</span></code></a>]</span>) – Callable(root, <code class="docutils literal notranslate"><span class="pre">**kwargs</span></code>) -&gt; <code class="docutils literal notranslate"><span class="pre">FilesBackend</span></code> instance.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.build_tree">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">build_tree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">backend</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">directory</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">extensions</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">skip_hidden</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_depth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/sdk/_tree.html#build_tree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.build_tree" title="Link to this definition"></a></dt>
+<dd><p>Build a nested tree structure from a FilesBackend.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>backend</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – A file storage backend implementing the FilesBackend protocol.</p></li>
+<li><p><strong>directory</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Starting directory (relative to backend root). Default: root.</p></li>
+<li><p><strong>extensions</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – Filter files by extension (e.g., [“.yaml”, “.png”]).
+Directories are always included for traversal.</p></li>
+<li><p><strong>skip_hidden</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Skip files/directories starting with “.”. Default: True.</p></li>
+<li><p><strong>max_depth</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum recursion depth to prevent runaway traversal. Default: 10.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><p>Nested tree structure:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">[</span>
+    <span class="p">{</span><span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="s2">&quot;subdir&quot;</span><span class="p">,</span> <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="s2">&quot;subdir&quot;</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;directory&quot;</span><span class="p">,</span>
+     <span class="s2">&quot;children&quot;</span><span class="p">:</span> <span class="p">[</span><span class="o">...</span><span class="p">]},</span>
+    <span class="p">{</span><span class="s2">&quot;path&quot;</span><span class="p">:</span> <span class="s2">&quot;file.yaml&quot;</span><span class="p">,</span> <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="s2">&quot;file.yaml&quot;</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;file&quot;</span><span class="p">},</span>
+<span class="p">]</span>
+</pre></div>
+</div>
+</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.read_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">read_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">binary</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#read_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.read_file" title="Link to this definition"></a></dt>
+<dd><p>Read a single file via the resolved <a class="reference internal" href="#scitex.app.FilesBackend" title="scitex.app.FilesBackend"><code class="xref py py-class docutils literal notranslate"><span class="pre">FilesBackend</span></code></a>.</p>
+<p>Equivalent to <code class="docutils literal notranslate"><span class="pre">get_files(root).read(path,</span> <span class="pre">binary=binary)</span></code>;
+mirrors the <code class="docutils literal notranslate"><span class="pre">app_read_file</span></code> MCP tool.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#bytes" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bytes</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.write_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">write_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">content</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#write_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.write_file" title="Link to this definition"></a></dt>
+<dd><p>Write a file via the resolved <a class="reference internal" href="#scitex.app.FilesBackend" title="scitex.app.FilesBackend"><code class="xref py py-class docutils literal notranslate"><span class="pre">FilesBackend</span></code></a>.</p>
+<p>Mirrors the <code class="docutils literal notranslate"><span class="pre">app_write_file</span></code> MCP tool.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.list_files">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">list_files</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">directory</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extensions</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#list_files"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.list_files" title="Link to this definition"></a></dt>
+<dd><p>List file paths under <em>directory</em>.</p>
+<p>Mirrors the <code class="docutils literal notranslate"><span class="pre">app_list_files</span></code> MCP tool.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.file_exists">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">file_exists</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#file_exists"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.file_exists" title="Link to this definition"></a></dt>
+<dd><p>Return whether <em>path</em> exists in the resolved backend.</p>
+<p>Mirrors the <code class="docutils literal notranslate"><span class="pre">app_file_exists</span></code> MCP tool.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.delete_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">delete_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#delete_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.delete_file" title="Link to this definition"></a></dt>
+<dd><p>Delete <em>path</em> in the resolved backend.</p>
+<p>Mirrors the <code class="docutils literal notranslate"><span class="pre">app_delete_file</span></code> MCP tool.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.copy_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">copy_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dest_path</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#copy_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.copy_file" title="Link to this definition"></a></dt>
+<dd><p>Copy <em>src_path</em> to <em>dest_path</em> within the resolved backend.</p>
+<p>Mirrors the <code class="docutils literal notranslate"><span class="pre">app_copy_file</span></code> MCP tool.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.rename_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">rename_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">old_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">new_path</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#rename_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.rename_file" title="Link to this definition"></a></dt>
+<dd><p>Rename <em>old_path</em> to <em>new_path</em> within the resolved backend.</p>
+<p>Mirrors the <code class="docutils literal notranslate"><span class="pre">app_rename_file</span></code> MCP tool.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.scaffold">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">scaffold</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">label</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">icon</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'fas</span> <span class="pre">fa-puzzle-piece'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">frontend</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'html'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#scaffold"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.scaffold" title="Link to this definition"></a></dt>
+<dd><p>Generate a new SciTeX workspace app skeleton.</p>
+<p>Mirrors the <code class="docutils literal notranslate"><span class="pre">app_scaffold</span></code> MCP tool. Auto-appends <code class="docutils literal notranslate"><span class="pre">_app</span></code> /
+<code class="docutils literal notranslate"><span class="pre">-app</span></code> to <em>name</em> (matching the MCP tool’s behaviour) so
+Python and MCP callers see the same result for the same inputs.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.app.validate">
+<span class="sig-prename descclassname"><span class="pre">scitex.app.</span></span><span class="sig-name descname"><span class="pre">validate</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">app_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_app/_files_api.html#validate"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.app.validate" title="Link to this definition"></a></dt>
+<dd><p>Audit a SciTeX app for cloud-submission readiness.</p>
+<p>Mirrors the <code class="docutils literal notranslate"><span class="pre">app_validate</span></code> MCP tool. Returns the list of
+errors (empty when the app is ready).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/audio.html b/src/scitex/_sphinx_html/source/api/audio.html
new file mode 100644
index 000000000..7c35e7e0b
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/audio.html
@@ -0,0 +1,735 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Audio Module (stx.audio) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
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+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/audio.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="audio-module-stx-audio">
+<h1>Audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)<a class="headerlink" href="#audio-module-stx-audio" title="Link to this heading"></a></h1>
+<p>Text-to-speech synthesis and audio file playback. Supports multiple
+TTS backends with automatic fallback.</p>
+<section id="quick-start">
+<h2>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Text-to-speech</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">audio</span><span class="o">.</span><span class="n">speak</span><span class="p">(</span><span class="s2">&quot;Analysis complete. 42 significant results found.&quot;</span><span class="p">)</span>
+
+<span class="c1"># Play an audio file</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">audio</span><span class="o">.</span><span class="n">play</span><span class="p">(</span><span class="s2">&quot;notification.wav&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="key-functions">
+<h2>Key Functions<a class="headerlink" href="#key-functions" title="Link to this heading"></a></h2>
+<section id="speak-text-backend-none-kwargs">
+<h3><code class="docutils literal notranslate"><span class="pre">speak(text,</span> <span class="pre">backend=None,</span> <span class="pre">**kwargs)</span></code><a class="headerlink" href="#speak-text-backend-none-kwargs" title="Link to this heading"></a></h3>
+<p>Convert text to speech and play it through the default audio output.
+If no backend is specified, the first available backend is used.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Use default backend</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">audio</span><span class="o">.</span><span class="n">speak</span><span class="p">(</span><span class="s2">&quot;Hello from SciTeX&quot;</span><span class="p">)</span>
+
+<span class="c1"># Specify a backend</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">audio</span><span class="o">.</span><span class="n">speak</span><span class="p">(</span><span class="s2">&quot;Hello&quot;</span><span class="p">,</span> <span class="n">backend</span><span class="o">=</span><span class="s2">&quot;espeak&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="play-path">
+<h3><code class="docutils literal notranslate"><span class="pre">play(path)</span></code><a class="headerlink" href="#play-path" title="Link to this heading"></a></h3>
+<p>Play an audio file (WAV, MP3, etc.).</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">audio</span><span class="o">.</span><span class="n">play</span><span class="p">(</span><span class="s2">&quot;alert.wav&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">audio</span><span class="o">.</span><span class="n">play</span><span class="p">(</span><span class="s2">&quot;recording.mp3&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="list-backends">
+<h3><code class="docutils literal notranslate"><span class="pre">list_backends()</span></code><a class="headerlink" href="#list-backends" title="Link to this heading"></a></h3>
+<p>List available TTS backends on the current system.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">backends</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">audio</span><span class="o">.</span><span class="n">list_backends</span><span class="p">()</span>
+<span class="c1"># e.g., [&#39;espeak&#39;, &#39;festival&#39;, &#39;pyttsx3&#39;]</span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="use-cases">
+<h2>Use Cases<a class="headerlink" href="#use-cases" title="Link to this heading"></a></h2>
+<p>Audible notifications are useful for long-running experiments:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">):</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">train_model</span><span class="p">()</span>  <span class="c1"># Takes hours</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">audio</span><span class="o">.</span><span class="n">speak</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Training done. Accuracy: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">accuracy</span><span class="si">:</span><span class="s2">.1%</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="mi">0</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.audio">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.audio" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/audit.html b/src/scitex/_sphinx_html/source/api/audit.html
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+++ b/src/scitex/_sphinx_html/source/api/audit.html
@@ -0,0 +1,705 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>audit Module (stx.audit) &mdash; SciTeX v0.0.0</title>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/audit.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.audit">
+<span id="audit-module-stx-audit"></span><h1>audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)<a class="headerlink" href="#module-scitex.audit" title="Link to this heading"></a></h1>
+<p>SciTeX Audit Module</p>
+<p>Unified security scanning by orchestrating bandit (Python), shellcheck (shell),
+pip-audit (deps), and GitHub alerts.</p>
+<dl>
+<dt>Usage:</dt><dd><p>from scitex_audit import audit</p>
+<p>results = audit(“.”)
+results = audit(“.”, checks=[“python”, “shell”])</p>
+</dd>
+</dl>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.audit.audit">
+<span class="sig-prename descclassname"><span class="pre">scitex.audit.</span></span><span class="sig-name descname"><span class="pre">audit</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'.'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">checks</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_audit/_runner.html#audit"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.audit.audit" title="Link to this definition"></a></dt>
+<dd><p>Run security audit across multiple tools.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Directory to scan. Defaults to current directory.</p></li>
+<li><p><strong>checks</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – Which checks to run. Options: “python”, “shell”, “deps”, “github”.
+None means run all available checks.</p></li>
+<li><p><strong>output_file</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – If given, write JSON report to this path.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Keys are check names, values have {status, findings, summary}.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+      jQuery(function () {
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/benchmark.html b/src/scitex/_sphinx_html/source/api/benchmark.html
new file mode 100644
index 000000000..1426179c0
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/benchmark.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>benchmark Module (stx.benchmark) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+  
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+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
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+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/benchmark.rst" class="fa fa-github"> Edit on GitHub</a>
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+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.benchmark">
+<span id="benchmark-module-stx-benchmark"></span><h1>benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)<a class="headerlink" href="#module-scitex.benchmark" title="Link to this heading"></a></h1>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
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+  <hr/>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/source/api/bridge.html b/src/scitex/_sphinx_html/source/api/bridge.html
new file mode 100644
index 000000000..4345516bc
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/bridge.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>bridge Module (stx.bridge) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+      <li class="breadcrumb-item active">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</li>
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+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/bridge.rst" class="fa fa-github"> Edit on GitHub</a>
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+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.bridge">
+<span id="bridge-module-stx-bridge"></span><h1>bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)<a class="headerlink" href="#module-scitex.bridge" title="Link to this heading"></a></h1>
+</section>
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diff --git a/src/scitex/_sphinx_html/source/api/browser.html b/src/scitex/_sphinx_html/source/api/browser.html
new file mode 100644
index 000000000..eff167ff1
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/browser.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>browser Module (stx.browser) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
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+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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diff --git a/src/scitex/_sphinx_html/source/api/canvas.html b/src/scitex/_sphinx_html/source/api/canvas.html
new file mode 100644
index 000000000..713e001ff
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+
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+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
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+        </div>
+      </div>
+    </nav>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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diff --git a/src/scitex/_sphinx_html/source/api/capture.html b/src/scitex/_sphinx_html/source/api/capture.html
new file mode 100644
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--- /dev/null
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/capture.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="capture-module-stx-capture">
+<h1>Capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)<a class="headerlink" href="#capture-module-stx-capture" title="Link to this heading"></a></h1>
+<p>Screenshot capture and screen monitoring utilities. Useful for
+documenting GUI states, recording experiment progress, and
+automated visual testing.</p>
+<section id="quick-start">
+<h2>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Take a screenshot</span>
+<span class="n">img</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">capture</span><span class="o">.</span><span class="n">snap</span><span class="p">()</span>
+
+<span class="c1"># Save it</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="s2">&quot;screenshot.png&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="key-functions">
+<h2>Key Functions<a class="headerlink" href="#key-functions" title="Link to this heading"></a></h2>
+<section id="snap-region-none">
+<h3><code class="docutils literal notranslate"><span class="pre">snap(region=None)</span></code><a class="headerlink" href="#snap-region-none" title="Link to this heading"></a></h3>
+<p>Capture a screenshot of the entire screen or a specific region.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Full screen</span>
+<span class="n">img</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">capture</span><span class="o">.</span><span class="n">snap</span><span class="p">()</span>
+
+<span class="c1"># Specific region (x, y, width, height)</span>
+<span class="n">img</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">capture</span><span class="o">.</span><span class="n">snap</span><span class="p">(</span><span class="n">region</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">800</span><span class="p">,</span> <span class="mi">600</span><span class="p">))</span>
+</pre></div>
+</div>
+</section>
+<section id="monitor-interval-1-0-duration-none-output-dir">
+<h3><code class="docutils literal notranslate"><span class="pre">monitor(interval=1.0,</span> <span class="pre">duration=None,</span> <span class="pre">output_dir=&quot;.&quot;)</span></code><a class="headerlink" href="#monitor-interval-1-0-duration-none-output-dir" title="Link to this heading"></a></h3>
+<p>Capture screenshots at regular intervals. Useful for monitoring
+long-running GUI processes.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Capture every 5 seconds for 1 minute</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">capture</span><span class="o">.</span><span class="n">monitor</span><span class="p">(</span><span class="n">interval</span><span class="o">=</span><span class="mf">5.0</span><span class="p">,</span> <span class="n">duration</span><span class="o">=</span><span class="mi">60</span><span class="p">,</span> <span class="n">output_dir</span><span class="o">=</span><span class="s2">&quot;./captures&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="crop-image-region">
+<h3><code class="docutils literal notranslate"><span class="pre">crop(image,</span> <span class="pre">region)</span></code><a class="headerlink" href="#crop-image-region" title="Link to this heading"></a></h3>
+<p>Crop a captured image to a specific region.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">img</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">capture</span><span class="o">.</span><span class="n">snap</span><span class="p">()</span>
+<span class="n">cropped</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">capture</span><span class="o">.</span><span class="n">crop</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">region</span><span class="o">=</span><span class="p">(</span><span class="mi">100</span><span class="p">,</span> <span class="mi">100</span><span class="p">,</span> <span class="mi">400</span><span class="p">,</span> <span class="mi">300</span><span class="p">))</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">cropped</span><span class="p">,</span> <span class="s2">&quot;cropped.png&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="use-cases">
+<h2>Use Cases<a class="headerlink" href="#use-cases" title="Link to this heading"></a></h2>
+<p>Documenting experiment results displayed in a GUI:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">):</span>
+    <span class="n">run_experiment_gui</span><span class="p">()</span>
+    <span class="n">img</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">capture</span><span class="o">.</span><span class="n">snap</span><span class="p">()</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="s2">&quot;final_state.png&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="mi">0</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.capture">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.capture" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+
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diff --git a/src/scitex/_sphinx_html/source/api/clew.html b/src/scitex/_sphinx_html/source/api/clew.html
new file mode 100644
index 000000000..6ff70ae92
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/clew.html
@@ -0,0 +1,1281 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Clew Module (stx.clew) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
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+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/clew.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="clew-module-stx-clew">
+<h1>Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)<a class="headerlink" href="#clew-module-stx-clew" title="Link to this heading"></a></h1>
+<p>Hash-based provenance tracking for reproducible science. Clew (Ariadne’s
+thread) records file hashes during <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> runs and traces
+dependency chains back to source.</p>
+<section id="how-it-works">
+<h2>How It Works<a class="headerlink" href="#how-it-works" title="Link to this heading"></a></h2>
+<ol class="arabic simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> starts a tracking session</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.io.load()</span></code> records input file hashes</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stx.io.save()</span></code> records output file hashes</p></li>
+<li><p>Session close computes a combined hash of all inputs/outputs</p></li>
+<li><p>Later, <code class="docutils literal notranslate"><span class="pre">stx.clew</span></code> can verify nothing has changed</p></li>
+</ol>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Automatic -- just use @stx.session + stx.io</span>
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">():</span>
+    <span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;input.csv&quot;</span><span class="p">)</span>      <span class="c1"># Tracked as input</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">process</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="s2">&quot;output.png&quot;</span><span class="p">)</span>     <span class="c1"># Tracked as output</span>
+    <span class="k">return</span> <span class="mi">0</span>
+
+<span class="c1"># Verify later</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">status</span><span class="p">()</span>                         <span class="c1"># Like git status</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="s2">&quot;session_id&quot;</span><span class="p">)</span>                <span class="c1"># Verify by hash</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="s2">&quot;output.png&quot;</span><span class="p">)</span>              <span class="c1"># Trace to source</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-commands">
+<h2>CLI Commands<a class="headerlink" href="#cli-commands" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>clew<span class="w"> </span>status<span class="w">                  </span><span class="c1"># Show changed files</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>list<span class="w">                    </span><span class="c1"># List all tracked runs</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>run<span class="w"> </span>&lt;session_id&gt;<span class="w">        </span><span class="c1"># Verify a specific run</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>chain<span class="w"> </span>&lt;file&gt;<span class="w">            </span><span class="c1"># Trace dependency chain</span>
+scitex<span class="w"> </span>clew<span class="w"> </span>stats<span class="w">                   </span><span class="c1"># Database statistics</span>
+</pre></div>
+</div>
+</section>
+<section id="verification-levels">
+<h2>Verification Levels<a class="headerlink" href="#verification-levels" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>CACHE</strong> – Hash comparison only (fast). Checks if files match stored hashes.</p></li>
+<li><p><strong>RERUN</strong> – Re-execute scripts and compare outputs (thorough). Catches logic errors.</p></li>
+</ul>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Fast: hash comparison</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="s2">&quot;session_id&quot;</span><span class="p">)</span>
+
+<span class="c1"># Thorough: re-execute and compare</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="s2">&quot;session_id&quot;</span><span class="p">,</span> <span class="n">from_scratch</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="dependency-chains">
+<h2>Dependency Chains<a class="headerlink" href="#dependency-chains" title="Link to this heading"></a></h2>
+<p>Clew traces <code class="docutils literal notranslate"><span class="pre">parent_session</span></code> links to build a DAG from final output
+back to original source:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">chain</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="s2">&quot;final_figure.png&quot;</span><span class="p">)</span>
+<span class="c1"># Shows: source.py → intermediate.csv → analysis.py → final_figure.png</span>
+
+<span class="c1"># Visualize as Mermaid DAG</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">clew</span><span class="o">.</span><span class="n">mermaid</span><span class="p">(</span><span class="s2">&quot;session_id&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="verification-statuses">
+<h2>Verification Statuses<a class="headerlink" href="#verification-statuses" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">VERIFIED</span></code> – Files match expected hashes</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">MISMATCH</span></code> – Files differ from stored hashes</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">MISSING</span></code> – Files no longer exist</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">UNKNOWN</span></code> – No prior tracking data</p></li>
+</ul>
+</section>
+<section id="key-functions">
+<h2>Key Functions<a class="headerlink" href="#key-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">status()</span></code> – Show changed items (like <code class="docutils literal notranslate"><span class="pre">git</span> <span class="pre">status</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">run(session_id)</span></code> – Verify a specific run</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">chain(target_file)</span></code> – Trace dependency chain</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">list_runs(limit,</span> <span class="pre">status)</span></code> – List tracked runs</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">stats()</span></code> – Database statistics</p></li>
+</ul>
+</section>
+<section id="module-scitex.clew">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.clew" title="Link to this heading"></a></h2>
+<p>scitex-clew — Hash-based verification for reproducible science.</p>
+<p>Standalone package. Zero dependencies (pure stdlib + sqlite3).
+When used with scitex, integration is automatic via &#64;stx.session + stx.io.</p>
+<p>Public API:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex_clew</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">clew</span>
+
+<span class="c1"># Verification</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">status</span><span class="p">()</span>                      <span class="c1"># git-status-like overview</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span>               <span class="c1"># verify one run (hash check)</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="n">target_file</span><span class="p">)</span>            <span class="c1"># trace file → source chain</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">dag</span><span class="p">(</span><span class="n">targets</span><span class="p">)</span>                  <span class="c1"># verify full DAG</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">rerun</span><span class="p">(</span><span class="n">target</span><span class="p">)</span>                 <span class="c1"># re-execute &amp; compare (sandbox)</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">rerun_dag</span><span class="p">(</span><span class="n">targets</span><span class="p">)</span>            <span class="c1"># rerun full DAG in topo order</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">rerun_claims</span><span class="p">()</span>                <span class="c1"># rerun all claim-backing sessions</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">list_runs</span><span class="p">(</span><span class="n">limit</span><span class="o">=</span><span class="mi">100</span><span class="p">)</span>          <span class="c1"># list tracked runs</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">stats</span><span class="p">()</span>                       <span class="c1"># database statistics</span>
+
+<span class="c1"># Claims</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">add_claim</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>                <span class="c1"># register manuscript assertion</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">list_claims</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>              <span class="c1"># list registered claims</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">verify_claim</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>             <span class="c1"># verify a specific claim</span>
+
+<span class="c1"># Stamping</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">stamp</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>                    <span class="c1"># create temporal proof</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">list_stamps</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>              <span class="c1"># list stamps</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">check_stamp</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>              <span class="c1"># verify a stamp</span>
+
+<span class="c1"># Hashing</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">hash_file</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>               <span class="c1"># SHA256 of a file</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">hash_directory</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>          <span class="c1"># SHA256 of all files in dir</span>
+
+<span class="c1"># Visualization</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">mermaid</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>                  <span class="c1"># generate Mermaid DAG diagram</span>
+
+<span class="c1"># Examples</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">init_examples</span><span class="p">(</span><span class="n">dest</span><span class="p">)</span>           <span class="c1"># scaffold example pipeline</span>
+
+<span class="c1"># Session lifecycle hooks (invoked by @scitex.session)</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">on_session_start</span><span class="p">(</span><span class="n">session_id</span><span class="p">)</span>  <span class="c1"># open a tracked run</span>
+<span class="n">clew</span><span class="o">.</span><span class="n">on_session_close</span><span class="p">(</span><span class="n">status</span><span class="o">=...</span><span class="p">)</span>  <span class="c1"># finalize run + combined hash</span>
+</pre></div>
+</div>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.status">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">status</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew.html#status"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.status" title="Link to this definition"></a></dt>
+<dd><p>Get verification status summary (like git status).</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.run">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">run</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">session_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">from_scratch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew.html#run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.run" title="Link to this definition"></a></dt>
+<dd><p>Verify a specific run.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>session_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Session identifier</p></li>
+<li><p><strong>from_scratch</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, re-execute the script and verify outputs (slow but thorough).
+If False, only compare hashes (fast).</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.chain">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">chain</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew.html#chain"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.chain" title="Link to this definition"></a></dt>
+<dd><p>Verify the dependency chain for a target file.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.dag">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">dag</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">targets</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claims</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew.html#dag"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.dag" title="Link to this definition"></a></dt>
+<dd><p>Verify the DAG for multiple targets or all claims.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>targets</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><em>list</em></a><em> of </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em> or </em><em>Path</em><em>, </em><em>optional</em>) – Target files to verify (mutually exclusive with <code class="docutils literal notranslate"><span class="pre">claims</span></code>).</p></li>
+<li><p><strong>claims</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a><em>, </em><em>optional</em>) – If True, build the DAG from every registered claim.</p></li>
+<li><p><strong>strict</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a><em>, </em><em>optional</em>) – If True (F2), return a failure-attribution dict with
+<code class="docutils literal notranslate"><span class="pre">failed_node</span></code> / <code class="docutils literal notranslate"><span class="pre">root_cause</span></code> / <code class="docutils literal notranslate"><span class="pre">invalidated_claims</span></code> /
+<code class="docutils literal notranslate"><span class="pre">still_valid_claims</span></code> instead of a <code class="docutils literal notranslate"><span class="pre">DAGVerification</span></code>.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.rerun">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">rerun</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cleanup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew.html#rerun"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.rerun" title="Link to this definition"></a></dt>
+<dd><p>Re-execute a session in a sandbox and compare outputs.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>target</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><em>list</em></a><em>[</em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>]</em>) – Session ID, script path, or artifact path.</p></li>
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum execution time in seconds (default: 300).</p></li>
+<li><p><strong>cleanup</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Remove sandbox outputs after verification (default: True).</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.rerun_dag">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">rerun_dag</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">targets</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cleanup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_rerun.html#rerun_dag"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.rerun_dag" title="Link to this definition"></a></dt>
+<dd><p>Rerun-verify an entire DAG in topological order.</p>
+<p>Each session is re-executed in a sandbox against its ORIGINAL stored
+inputs (not freshly rerun outputs from upstream), then compared to
+the original outputs.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>targets</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Target output files whose upstream DAG should be rerun.
+If None, all runs in the database are used and their output
+files become the targets.</p></li>
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum execution time per session in seconds (default: 300).</p></li>
+<li><p><strong>cleanup</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to remove sandbox output directories after each rerun.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unified verification result for the entire DAG.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DAGVerification</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.rerun_claims">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">rerun_claims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cleanup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_rerun.html#rerun_claims"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.rerun_claims" title="Link to this definition"></a></dt>
+<dd><p>Rerun-verify all sessions that produced files referenced by claims.</p>
+<p>Collects unique source files from matching claims, then delegates
+to <code class="docutils literal notranslate"><span class="pre">rerun_dag</span></code> with those files as targets.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Filter claims by manuscript file path.</p></li>
+<li><p><strong>claim_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Filter claims by type (statistic, figure, table, text, value).</p></li>
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum execution time per session in seconds (default: 300).</p></li>
+<li><p><strong>cleanup</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to remove sandbox output directories after each rerun.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unified verification result for the upstream DAG of all
+source files referenced by the matching claims.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DAGVerification</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.list_runs">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">list_runs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">limit</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">status</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew.html#list_runs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.list_runs" title="Link to this definition"></a></dt>
+<dd><p>List tracked runs.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.stats">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">stats</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew.html#stats"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.stats" title="Link to this definition"></a></dt>
+<dd><p>Get database statistics.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.add_claim">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">add_claim</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">line_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">source_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">source_session</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_claim.html#add_claim"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.add_claim" title="Link to this definition"></a></dt>
+<dd><p>Register a claim linking a manuscript assertion to the verification chain.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Path to the manuscript file (e.g., paper.tex).</p></li>
+<li><p><strong>claim_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – One of: statistic, figure, table, text, value.</p></li>
+<li><p><strong>line_number</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Line number in the manuscript.</p></li>
+<li><p><strong>claim_value</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – The asserted value (e.g., “p = 0.003”).</p></li>
+<li><p><strong>source_file</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Path to the source file that produced this claim.</p></li>
+<li><p><strong>source_session</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Session ID that produced the source.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The registered claim object.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Claim</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.list_claims">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">list_claims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">status</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">limit</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_claim.html#list_claims"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.list_claims" title="Link to this definition"></a></dt>
+<dd><p>List registered claims with optional filters.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Filter by manuscript file path.</p></li>
+<li><p><strong>claim_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Filter by claim type.</p></li>
+<li><p><strong>status</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Filter by verification status.</p></li>
+<li><p><strong>limit</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum number of claims to return.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<code class="xref py py-class docutils literal notranslate"><span class="pre">Claim</span></code>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.verify_claim">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">verify_claim</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">claim_id_or_location</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_claim.html#verify_claim"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.verify_claim" title="Link to this definition"></a></dt>
+<dd><p>Verify a specific claim by checking its source against the verification chain.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>claim_id_or_location</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Either a claim_id or a location string like “paper.tex:L42”.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Verification result with claim details and chain status.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.export_claims_json">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">export_claims_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">file_path_filter</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">read_only</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_claim.html#export_claims_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.export_claims_json" title="Link to this definition"></a></dt>
+<dd><p>Export every registered claim to a canonical JSON artifact.</p>
+<p>The exported file is the single human-readable + machine-consumable
+view of the claims table in <code class="docutils literal notranslate"><span class="pre">db.sqlite</span></code>. The DB remains the
+source of truth; this JSON is a regenerable artifact.</p>
+<p>Path resolution (mirrors <code class="xref py py-func docutils literal notranslate"><span class="pre">scitex_clew._db._core._default_db_path()</span></code>):</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>1. Explicit ``path`` argument.
+2. ``$SCITEX_CLEW_CLAIMS_JSON`` env var (escape hatch).
+3. ``&lt;project_root&gt;/.scitex/clew/runtime/claims.json``
+   (project root = nearest ancestor dir with ``.git`` or
+   ``pyproject.toml``; falls back to cwd if none found).
+</pre></div>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Override the resolved path. Useful for tests / one-off dumps.</p></li>
+<li><p><strong>file_path_filter</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – When set, only claims registered against this manuscript file
+path are exported. Default: every claim in the DB.</p></li>
+<li><p><strong>read_only</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – After writing, <code class="docutils literal notranslate"><span class="pre">chmod</span> <span class="pre">0o444</span></code> the file so accidental edits
+fail loudly at the OS layer. Default True (the file IS
+derived). Set False for tests that need to mutate the file.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The path the artifact was written to (absolute).</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex_clew</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">clew</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">clew</span><span class="o">.</span><span class="n">add_claim</span><span class="p">(</span><span class="s2">&quot;paper.tex&quot;</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">,</span> <span class="mi">42</span><span class="p">,</span> <span class="s2">&quot;0.94&quot;</span><span class="p">,</span> <span class="n">source_file</span><span class="o">=</span><span class="s2">&quot;r.csv&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># claims.json now auto-exported under ./.scitex/clew/runtime/</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">clew</span><span class="o">.</span><span class="n">export_claims_json</span><span class="p">()</span>  <span class="c1"># idempotent — re-emit on demand</span>
+<span class="go">PosixPath(&#39;.../.scitex/clew/runtime/claims.json&#39;)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.register_intermediate">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">register_intermediate</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">supports</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">session_id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claim_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'value'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_register_intermediate.html#register_intermediate"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.register_intermediate" title="Link to this definition"></a></dt>
+<dd><p>Register a computed intermediate as a Clew claim.</p>
+<p>Use this from inside a <cite>&#64;stx.session</cite> script (or from an agent loop) to
+record any non-trivial intermediate value with explicit upstream support.
+The claim becomes part of the DAG and can be queried via <cite>clew.chain</cite>,
+<cite>clew.dag</cite>, or the MCP <cite>clew_chain</cite> / <cite>clew_dag</cite> tools.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Descriptive identifier (e.g. <cite>“acute_n_sig_pathways”</cite>). Avoid generic
+names like <cite>“result_3”</cite> — the id is the only handle a future inspector
+has on the value.</p></li>
+<li><p><strong>value</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – The computed result. Coerced to string for storage; the hash chain
+sees <cite>repr(value)</cite> so types matter.</p></li>
+<li><p><strong>supports</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – List of upstream claim ids or session ids that this value depends on.
+Stored as JSON in the claim’s value field for retrieval. None means
+no explicit upstream (use sparingly).</p></li>
+<li><p><strong>session_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – The session this value belongs to. If None, read from the
+<cite>SCITEX_SESSION_ID</cite> env var that <cite>&#64;stx.session</cite> sets at start.</p></li>
+<li><p><strong>claim_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – One of <cite>statistic</cite>, <cite>figure</cite>, <cite>table</cite>, <cite>text</cite>, <cite>value</cite>. Defaults to
+<cite>value</cite> since intermediates are usually scalar / categorical results.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The registered claim object.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Claim</span></code></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ValueError" title="(in Python v3.14)"><strong>ValueError</strong></a> – If no session_id can be determined (env var unset and not passed).</p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<p>Inside a <cite>&#64;stx.session</cite> script:</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_clew</span><span class="w"> </span><span class="kn">import</span> <span class="n">register_intermediate</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">n_sig</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="mi">1</span> <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">pathways</span> <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">padj</span> <span class="o">&lt;</span> <span class="mf">0.05</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">register_intermediate</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="n">name</span><span class="o">=</span><span class="s2">&quot;chronic_r2_n_sig_pathways&quot;</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">value</span><span class="o">=</span><span class="n">n_sig</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">supports</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;chronic_r2_min_pvals&quot;</span><span class="p">,</span> <span class="s2">&quot;reactome_pathways_v2024&quot;</span><span class="p">],</span>
+<span class="gp">... </span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.stamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">stamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">backend</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'file'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">service_url</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">session_ids</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_stamp.html#stamp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.stamp" title="Link to this definition"></a></dt>
+<dd><p>Record root hash with external timestamp.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>backend</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – One of: file, rfc3161, zenodo.</p></li>
+<li><p><strong>service_url</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – URL for RFC 3161 TSA or Zenodo API.</p></li>
+<li><p><strong>session_ids</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – Specific sessions to stamp. If None, stamps all successful runs.</p></li>
+<li><p><strong>output_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Directory for file-based stamps (default: &lt;db_dir&gt;/stamps, i.e. .scitex/clew/runtime/stamps/).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The timestamp proof record.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Stamp</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.list_stamps">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">list_stamps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">limit</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_stamp.html#list_stamps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.list_stamps" title="Link to this definition"></a></dt>
+<dd><p>List all stamps.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<code class="xref py py-class docutils literal notranslate"><span class="pre">Stamp</span></code>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.check_stamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">check_stamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">stamp_id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_stamp.html#check_stamp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.check_stamp" title="Link to this definition"></a></dt>
+<dd><p>Verify a stamp against current verification state.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>stamp_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific stamp to check. If None, checks the latest stamp.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{stamp, current_root_hash, matches, details}</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.hash_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">hash_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">algorithm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sha256'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">chunk_size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">8192</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_hash.html#hash_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.hash_file" title="Link to this definition"></a></dt>
+<dd><p>Compute hash of a file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to the file to hash</p></li>
+<li><p><strong>algorithm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Hash algorithm (default: sha256)</p></li>
+<li><p><strong>chunk_size</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Size of chunks to read (default: 8192)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Hexadecimal hash string (first 32 characters)</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">hash_file</span><span class="p">(</span><span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+<span class="go">&#39;a1b2c3d4e5f6...&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.hash_directory">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">hash_directory</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pattern</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'*'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recursive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">algorithm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sha256'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_hash.html#hash_directory"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.hash_directory" title="Link to this definition"></a></dt>
+<dd><p>Compute hashes for all files in a directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Directory path</p></li>
+<li><p><strong>pattern</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Glob pattern for files (default: “*”)</p></li>
+<li><p><strong>recursive</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to search recursively (default: True)</p></li>
+<li><p><strong>algorithm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Hash algorithm (default: sha256)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Mapping of relative paths to hashes</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">hash_directory</span><span class="p">(</span><span class="s2">&quot;./data/&quot;</span><span class="p">)</span>
+<span class="go">{&#39;input.csv&#39;: &#39;a1b2...&#39;, &#39;config.yaml&#39;: &#39;c3d4...&#39;}</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.mermaid">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">mermaid</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">session_id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_files</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">claims</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">grouper</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew.html#mermaid"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.mermaid" title="Link to this definition"></a></dt>
+<dd><p>Generate a Mermaid DAG diagram.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>session_id</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Start from this session.</p></li>
+<li><p><strong>target_file</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Start from the session that produced this file.</p></li>
+<li><p><strong>target_files</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><em>list</em></a><em> of </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Multiple target files (multi-target DAG).</p></li>
+<li><p><strong>claims</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a><em>, </em><em>optional</em>) – If True, build DAG from all registered claims.</p></li>
+<li><p><strong>grouper</strong> (<em>callable</em><em> | </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><em>dict</em></a><em> | </em><em>None</em><em>, </em><em>optional</em>) – File grouping strategy. Callable or JSON/dict spec (see
+<code class="docutils literal notranslate"><span class="pre">scitex_clew.groupers.resolve_spec</span></code>). If <code class="docutils literal notranslate"><span class="pre">None</span></code>, falls back to
+<code class="docutils literal notranslate"><span class="pre">.scitex/clew/config.yaml</span></code> (key <code class="docutils literal notranslate"><span class="pre">grouper</span></code>) if present.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.init_examples">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">init_examples</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dest</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">variant</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sequential'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">find_examples_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;function</span> <span class="pre">_find_examples_dir&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_examples.html#init_examples"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.init_examples" title="Link to this definition"></a></dt>
+<dd><p>Copy Clew example scripts to a destination directory.</p>
+<p>Copies only the runnable scripts (.py, .sh) and README — not
+the output directories.  Users run <code class="docutils literal notranslate"><span class="pre">00_run_all.sh</span></code> themselves
+to generate outputs and populate the verification database.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dest</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Destination directory.  Created if it does not exist.
+Existing script files are overwritten.</p></li>
+<li><p><strong>variant</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Example variant: “sequential” (default) or “multi_parent”.</p></li>
+<li><p><strong>find_examples_dir</strong> (<em>callable</em><em>, </em><em>optional</em>) – Locator callable <code class="docutils literal notranslate"><span class="pre">(variant:</span> <span class="pre">str)</span> <span class="pre">-&gt;</span> <span class="pre">Optional[Path]</span></code> used to
+resolve the bundled examples source. Production callers should
+not pass this; it is the canonical PA-306 §1 DI seam — tests
+inject a hand-rolled fake that returns a <code class="docutils literal notranslate"><span class="pre">tmp_path</span></code>-rooted
+directory or <code class="docutils literal notranslate"><span class="pre">None</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><code class="docutils literal notranslate"><span class="pre">{&quot;path&quot;:</span> <span class="pre">str,</span> <span class="pre">&quot;files&quot;:</span> <span class="pre">list[str],</span> <span class="pre">&quot;file_count&quot;:</span> <span class="pre">int,</span> <span class="pre">&quot;variant&quot;:</span> <span class="pre">str}</span></code></p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If the bundled examples cannot be located.</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ValueError" title="(in Python v3.14)"><strong>ValueError</strong></a> – If variant is not recognized.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.on_session_start">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">on_session_start</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">session_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">script_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parent_session</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_observers/_session.html#on_session_start"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.on_session_start" title="Link to this definition"></a></dt>
+<dd><p>Hook called when a session starts.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>session_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Unique session identifier</p></li>
+<li><p><strong>script_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Path to the script being run</p></li>
+<li><p><strong>parent_session</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Parent session ID for chain tracking</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to log status messages</p></li>
+<li><p><strong>metadata</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>]</span>) – Additional metadata (e.g. notebook_path, cell_index)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.clew.on_session_close">
+<span class="sig-prename descclassname"><span class="pre">scitex.clew.</span></span><span class="sig-name descname"><span class="pre">on_session_close</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">status</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'success'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exit_code</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">register</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_clew/_observers/_session.html#on_session_close"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.clew.on_session_close" title="Link to this definition"></a></dt>
+<dd><p>Hook called when a session closes.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>status</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Final status (success, failed, error)</p></li>
+<li><p><strong>exit_code</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Exit code of the script</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to log status messages</p></li>
+<li><p><strong>register</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>]</span>) – If True, register session hashes with remote Clew Registry.
+If None, checks SCITEX_AUTO_REGISTER environment variable.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/cli.html b/src/scitex/_sphinx_html/source/api/cli.html
new file mode 100644
index 000000000..48970167e
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/cli.html
@@ -0,0 +1,737 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>cli Module (stx.cli) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/cli.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.cli">
+<span id="cli-module-stx-cli"></span><h1>cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)<a class="headerlink" href="#module-scitex.cli" title="Link to this heading"></a></h1>
+<p>SciTeX CLI - Command-line interface for SciTeX platform</p>
+<p>Provides unified interface for:
+- Cloud operations (wraps tea for Gitea)
+- Scholar operations (Django API)
+- Code operations (Django API)
+- Viz operations (Django API)
+- Writer operations (Django API)
+- Project operations (integrated workflows)</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cli.print_help_recursive">
+<span class="sig-prename descclassname"><span class="pre">scitex.cli.</span></span><span class="sig-name descname"><span class="pre">print_help_recursive</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ctx</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex/cli.html#print_help_recursive"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cli.print_help_recursive" title="Link to this definition"></a></dt>
+<dd><p>Print help for a group and all its subcommands.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>ctx</strong> – The click context</p></li>
+<li><p><strong>group</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Group</span></code></span>) – The click group to print help for</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cli.format_python_signature">
+<span class="sig-prename descclassname"><span class="pre">scitex.cli.</span></span><span class="sig-name descname"><span class="pre">format_python_signature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">func</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">multiline</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">indent</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'</span>&#160; <span class="pre">'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex/cli.html#format_python_signature"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cli.format_python_signature" title="Link to this definition"></a></dt>
+<dd><p>Format Python function signature with colors matching mcp list-tools.</p>
+<p>Returns (name_colored, signature_colored)</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cli.group_to_json">
+<span class="sig-prename descclassname"><span class="pre">scitex.cli.</span></span><span class="sig-name descname"><span class="pre">group_to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ctx</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex/cli.html#group_to_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cli.group_to_json" title="Link to this definition"></a></dt>
+<dd><p>Output a group’s subcommands as Result JSON and exit.</p>
+<p>Provides <code class="docutils literal notranslate"><span class="pre">--json</span></code> behavior for group-level commands, listing
+available subcommands with their short help text.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cli.help_recursive_to_json">
+<span class="sig-prename descclassname"><span class="pre">scitex.cli.</span></span><span class="sig-name descname"><span class="pre">help_recursive_to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ctx</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex/cli.html#help_recursive_to_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cli.help_recursive_to_json" title="Link to this definition"></a></dt>
+<dd><p>Output recursive help for a group and all subcommands as Result JSON.</p>
+<p>Walks the entire command tree and outputs structured JSON with
+command names, help text, options, and nested subcommands.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/cloud.html b/src/scitex/_sphinx_html/source/api/cloud.html
new file mode 100644
index 000000000..fb755980f
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/cloud.html
@@ -0,0 +1,778 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Cloud Module (stx.cloud) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/cloud.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="cloud-module-stx-cloud">
+<h1>Cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)<a class="headerlink" href="#cloud-module-stx-cloud" title="Link to this heading"></a></h1>
+<p>Cloud platform integration for the SciTeX ecosystem. Provides
+programmatic access to remote execution, file storage, job management,
+and repository operations.</p>
+<section id="overview">
+<h2>Overview<a class="headerlink" href="#overview" title="Link to this heading"></a></h2>
+<p>The cloud module connects local SciTeX workflows to the cloud platform,
+enabling remote computation, shared storage, and collaborative
+features. All operations are available through Python API, CLI, and
+MCP tools.</p>
+</section>
+<section id="quick-start">
+<h2>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Check cloud connection</span>
+<span class="n">status</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">status</span><span class="p">()</span>
+
+<span class="c1"># Submit a job</span>
+<span class="n">job_id</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">jobs</span><span class="o">.</span><span class="n">submit</span><span class="p">(</span><span class="n">script</span><span class="o">=</span><span class="s2">&quot;train.py&quot;</span><span class="p">,</span> <span class="n">resources</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;gpu&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">})</span>
+
+<span class="c1"># Check job status</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">jobs</span><span class="o">.</span><span class="n">status</span><span class="p">(</span><span class="n">job_id</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="key-features">
+<h2>Key Features<a class="headerlink" href="#key-features" title="Link to this heading"></a></h2>
+<section id="job-management">
+<h3>Job Management<a class="headerlink" href="#job-management" title="Link to this heading"></a></h3>
+<p>Submit, monitor, and retrieve results from remote compute jobs.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Submit a job</span>
+<span class="n">job_id</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">jobs</span><span class="o">.</span><span class="n">submit</span><span class="p">(</span>
+    <span class="n">script</span><span class="o">=</span><span class="s2">&quot;train.py&quot;</span><span class="p">,</span>
+    <span class="n">resources</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;gpu&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;memory&quot;</span><span class="p">:</span> <span class="s2">&quot;16G&quot;</span><span class="p">},</span>
+<span class="p">)</span>
+
+<span class="c1"># Poll status</span>
+<span class="n">status</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">jobs</span><span class="o">.</span><span class="n">status</span><span class="p">(</span><span class="n">job_id</span><span class="p">)</span>
+
+<span class="c1"># List all jobs</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">jobs</span><span class="o">.</span><span class="n">list</span><span class="p">()</span>
+
+<span class="c1"># Cancel a running job</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">jobs</span><span class="o">.</span><span class="n">cancel</span><span class="p">(</span><span class="n">job_id</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="file-storage">
+<h3>File Storage<a class="headerlink" href="#file-storage" title="Link to this heading"></a></h3>
+<p>Upload and download files to/from cloud storage.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Upload a file</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">files</span><span class="o">.</span><span class="n">upload</span><span class="p">(</span><span class="s2">&quot;local_data.h5&quot;</span><span class="p">,</span> <span class="n">remote</span><span class="o">=</span><span class="s2">&quot;data/experiment.h5&quot;</span><span class="p">)</span>
+
+<span class="c1"># Download a file</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">files</span><span class="o">.</span><span class="n">download</span><span class="p">(</span><span class="s2">&quot;data/experiment.h5&quot;</span><span class="p">,</span> <span class="n">local</span><span class="o">=</span><span class="s2">&quot;./downloaded.h5&quot;</span><span class="p">)</span>
+
+<span class="c1"># List remote files</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">files</span><span class="o">.</span><span class="n">list</span><span class="p">(</span><span class="s2">&quot;data/&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="data-api">
+<h3>Data API<a class="headerlink" href="#data-api" title="Link to this heading"></a></h3>
+<p>CRUD operations on structured data stored in the cloud.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Create a record</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">collection</span><span class="o">=</span><span class="s2">&quot;results&quot;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;accuracy&quot;</span><span class="p">:</span> <span class="mf">0.95</span><span class="p">})</span>
+
+<span class="c1"># Search records</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">collection</span><span class="o">=</span><span class="s2">&quot;results&quot;</span><span class="p">,</span> <span class="n">query</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;accuracy&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;$gt&quot;</span><span class="p">:</span> <span class="mf">0.9</span><span class="p">}})</span>
+
+<span class="c1"># List collections</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">list</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="repository-operations">
+<h3>Repository Operations<a class="headerlink" href="#repository-operations" title="Link to this heading"></a></h3>
+<p>Manage git repositories through the cloud API.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">repo</span><span class="o">.</span><span class="n">list</span><span class="p">()</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">repo</span><span class="o">.</span><span class="n">status</span><span class="p">(</span><span class="s2">&quot;my-project&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">cloud</span><span class="o">.</span><span class="n">repo</span><span class="o">.</span><span class="n">push</span><span class="p">(</span><span class="s2">&quot;my-project&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="cli-access">
+<h2>CLI Access<a class="headerlink" href="#cli-access" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Job management</span>
+scitex<span class="w"> </span>cloud<span class="w"> </span><span class="nb">jobs</span><span class="w"> </span>submit<span class="w"> </span>train.py<span class="w"> </span>--gpu<span class="w"> </span><span class="m">1</span>
+scitex<span class="w"> </span>cloud<span class="w"> </span><span class="nb">jobs</span><span class="w"> </span>status<span class="w"> </span>JOB_ID
+scitex<span class="w"> </span>cloud<span class="w"> </span><span class="nb">jobs</span><span class="w"> </span>list
+
+<span class="c1"># File operations</span>
+scitex<span class="w"> </span>cloud<span class="w"> </span>files<span class="w"> </span>upload<span class="w"> </span>data.h5
+scitex<span class="w"> </span>cloud<span class="w"> </span>files<span class="w"> </span>list
+
+<span class="c1"># Status</span>
+scitex<span class="w"> </span>cloud<span class="w"> </span>status
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.cloud">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.cloud" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/source/api/compat.html b/src/scitex/_sphinx_html/source/api/compat.html
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+++ b/src/scitex/_sphinx_html/source/api/compat.html
@@ -0,0 +1,702 @@
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/compat.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.compat">
+<span id="compat-module-stx-compat"></span><h1>compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)<a class="headerlink" href="#module-scitex.compat" title="Link to this heading"></a></h1>
+<p>SciTeX Backward Compatibility Module.</p>
+<p>This module provides aliases and wrappers for deprecated APIs.
+Import from here to use old function names that delegate to new implementations.</p>
+<p>Deprecation Timeline:
+- v1.x: Old APIs work with deprecation warnings
+- v2.x: Old APIs removed, use new APIs directly</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.compat.deprecated">
+<span class="sig-prename descclassname"><span class="pre">scitex.compat.</span></span><span class="sig-name descname"><span class="pre">deprecated</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">new_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">removal_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'2.0'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_compat/_compat.html#deprecated"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.compat.deprecated" title="Link to this definition"></a></dt>
+<dd><p>Decorator to mark functions as deprecated.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.compat.notify">
+<span class="sig-prename descclassname"><span class="pre">scitex.compat.</span></span><span class="sig-name descname"><span class="pre">notify</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_compat/_compat.html#notify"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.compat.notify" title="Link to this definition"></a></dt>
+<dd><p>Deprecated: Use scitex.notify.alert() instead.</p>
+<p>In standalone mode, this only emits a deprecation warning.
+The actual notification requires scitex.notify to be installed.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.compat.notify_async">
+<span class="property"><span class="k"><span class="pre">async</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.compat.</span></span><span class="sig-name descname"><span class="pre">notify_async</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_compat/_compat.html#notify_async"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.compat.notify_async" title="Link to this definition"></a></dt>
+<dd><p>Deprecated: Use scitex.notify.alert_async() instead.</p>
+<p>In standalone mode, this only emits a deprecation warning.
+The actual notification requires scitex.notify to be installed.</p>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/config.html b/src/scitex/_sphinx_html/source/api/config.html
new file mode 100644
index 000000000..95a16240b
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/config.html
@@ -0,0 +1,1403 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Config Module (stx.config) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
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+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#project-templates">Project Templates</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/config.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="config-module-stx-config">
+<h1>Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)<a class="headerlink" href="#config-module-stx-config" title="Link to this heading"></a></h1>
+<p>YAML-based configuration with priority resolution and path management.</p>
+<section id="priority-resolution">
+<h2>Priority Resolution<a class="headerlink" href="#priority-resolution" title="Link to this heading"></a></h2>
+<p>All config values follow the same precedence:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>direct argument &gt; config/YAML &gt; environment variable &gt; default
+</pre></div>
+</div>
+</section>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Get global config (reads ~/.scitex/config.yaml)</span>
+<span class="n">config</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get_config</span><span class="p">()</span>
+
+<span class="c1"># Resolve with precedence</span>
+<span class="n">log_level</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;logging.level&quot;</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="s2">&quot;INFO&quot;</span><span class="p">)</span>
+<span class="c1"># Checks: direct → YAML → SCITEX_LOGGING_LEVEL env → &quot;INFO&quot;</span>
+
+<span class="c1"># Access nested values</span>
+<span class="n">config</span><span class="o">.</span><span class="n">get_nested</span><span class="p">(</span><span class="s2">&quot;scholar&quot;</span><span class="p">,</span> <span class="s2">&quot;crossref_email&quot;</span><span class="p">)</span>
+
+<span class="c1"># Path management</span>
+<span class="n">paths</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get_paths</span><span class="p">()</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">scholar</span>        <span class="c1"># ~/.scitex/scholar</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">cache</span>          <span class="c1"># ~/.scitex/cache</span>
+</pre></div>
+</div>
+</section>
+<section id="yaml-configuration">
+<h2>YAML Configuration<a class="headerlink" href="#yaml-configuration" title="Link to this heading"></a></h2>
+<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="c1"># ~/.scitex/config.yaml (or ./config/*.yaml for projects)</span>
+<span class="nt">logging</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">level</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">INFO</span>
+
+<span class="nt">scholar</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">crossref_email</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">${CROSSREF_EMAIL:-user@example.com}</span>
+</pre></div>
+</div>
+<p>Environment variable substitution with <code class="docutils literal notranslate"><span class="pre">${VAR:-default}</span></code> syntax is
+supported in YAML files.</p>
+</section>
+<section id="key-classes">
+<h2>Key Classes<a class="headerlink" href="#key-classes" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code> – YAML-based config with env var substitution and precedence resolution</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code> – Dict-based config resolver for programmatic use</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code> – Centralized path manager (all paths derive from <code class="docutils literal notranslate"><span class="pre">~/.scitex/</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">EnvVar</span></code> – Environment variable definition dataclass</p></li>
+</ul>
+</section>
+<section id="path-management">
+<h2>Path Management<a class="headerlink" href="#path-management" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code> manages all SciTeX directories:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">paths</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get_paths</span><span class="p">()</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">base</span>       <span class="c1"># ~/.scitex (SCITEX_DIR)</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">logs</span>       <span class="c1"># ~/.scitex/logs</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">cache</span>      <span class="c1"># ~/.scitex/cache</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">scholar</span>    <span class="c1"># ~/.scitex/scholar</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">rng</span>        <span class="c1"># ~/.scitex/rng</span>
+<span class="n">paths</span><span class="o">.</span><span class="n">capture</span>    <span class="c1"># ~/.scitex/capture</span>
+</pre></div>
+</div>
+</section>
+<section id="utility-functions">
+<h2>Utility Functions<a class="headerlink" href="#utility-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get_config(path)</span></code> – Get singleton ScitexConfig instance</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_paths(base_dir)</span></code> – Get singleton ScitexPaths instance</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">load_yaml(path)</span></code> – Load YAML with env var substitution</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">load_dotenv(path)</span></code> – Load <code class="docutils literal notranslate"><span class="pre">.env</span></code> file</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code> – Get SCITEX_DIR with precedence</p></li>
+</ul>
+</section>
+<section id="module-scitex.config">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.config" title="Link to this heading"></a></h2>
+<p>scitex-config — configuration helpers (YAML + dotenv) — standalone.</p>
+<p>Two distinct API surfaces:</p>
+<p><strong>Public</strong> (top-level <code class="docutils literal notranslate"><span class="pre">scitex_config.*</span></code>) — convention-free generic
+primitives usable by any Python project:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code> — direct → config_dict → env → default cascade</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code>, <code class="docutils literal notranslate"><span class="pre">get_config</span></code>, <code class="docutils literal notranslate"><span class="pre">load_yaml</span></code> — YAML-based config</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code>, <code class="docutils literal notranslate"><span class="pre">get_paths</span></code> — centralized path manager</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">load_dotenv</span></code>, <code class="docutils literal notranslate"><span class="pre">get_scitex_dir</span></code> — utilities</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">parse_src_file</span></code>, <code class="docutils literal notranslate"><span class="pre">load_env_from_path</span></code>, <code class="docutils literal notranslate"><span class="pre">load_scitex_env</span></code> — bash-style
+<code class="docutils literal notranslate"><span class="pre">.src</span></code>/<code class="docutils literal notranslate"><span class="pre">.env</span></code> parsing (canonical line/value parser; <code class="docutils literal notranslate"><span class="pre">load_dotenv</span></code> delegates)</p></li>
+</ul>
+<p><strong>SciTeX-ecosystem internals</strong> (<code class="docutils literal notranslate"><span class="pre">scitex_config._ecosystem.*</span></code>) — helpers
+that embed SciTeX conventions (<cite>pkg-short</cite> naming, project-scope walk to
+<code class="docutils literal notranslate"><span class="pre">.git/</span></code>, <code class="docutils literal notranslate"><span class="pre">_skills/&lt;pkg&gt;/</span></code> layout, <code class="docutils literal notranslate"><span class="pre">SCITEX_&lt;MODULE&gt;_*</span></code> env prefix).
+For scitex-* package authors only; <strong>not a stable public API</strong>:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_config._ecosystem</span><span class="w"> </span><span class="kn">import</span> <span class="n">local_state</span><span class="p">,</span> <span class="n">env_registry</span>
+</pre></div>
+</div>
+<dl>
+<dt><strong>Priority Order</strong> (same for <code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code> and <code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code>):</dt><dd><p>direct → config (YAML/dict) → env → default</p>
+</dd>
+<dt>Usage:</dt><dd><p>from scitex_config import ScitexConfig, ScitexPaths, get_config, get_paths</p>
+<p># YAML-based configuration (Scholar pattern)
+config = get_config()
+log_level = config.resolve(“logging.level”, default=”INFO”)</p>
+<p># Centralized path manager
+paths = get_paths()
+print(paths.logs)      # ~/.scitex/logs
+print(paths.cache)     # ~/.scitex/cache</p>
+<p># Use resolve() pattern in modules
+cache_dir = paths.resolve(“cache”, user_provided_path)</p>
+</dd>
+</dl>
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">ScitexConfig</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'SCITEX_'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_ScitexConfig.html#ScitexConfig"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig" title="Link to this definition"></a></dt>
+<dd><p>YAML-based configuration manager for SciTeX.</p>
+<p>Loads configuration from YAML files with environment variable substitution.
+Values can be resolved with priority: direct → config → env → default.</p>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.config</span><span class="w"> </span><span class="kn">import</span> <span class="n">ScitexConfig</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">config</span> <span class="o">=</span> <span class="n">ScitexConfig</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;logging.level&quot;</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="s2">&quot;INFO&quot;</span><span class="p">)</span>
+<span class="go">&#39;INFO&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;debug.enabled&quot;</span><span class="p">)</span>
+<span class="go">False</span>
+</pre></div>
+</div>
+</div>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'SCITEX_'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize ScitexConfig.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>config_path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Path to custom YAML config file. If None, uses default.yaml.</p></li>
+<li><p><strong>env_prefix</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Prefix for environment variables (default: “<a href="#id1"><span class="problematic" id="id2">SCITEX_</span></a>”)</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.get">
+<span class="sig-name descname"><span class="pre">get</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.get"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.get" title="Link to this definition"></a></dt>
+<dd><p>Get value from config directly (no precedence resolution).</p>
+<p>Supports dot notation for nested keys.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>key</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Configuration key (e.g., “logging.level” or “debug.enabled”)</p></li>
+<li><p><strong>default</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Default value if key not found</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Configuration value</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.resolve">
+<span class="sig-name descname"><span class="pre">resolve</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">direct_val</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;class</span> <span class="pre">'str'&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.resolve"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.resolve" title="Link to this definition"></a></dt>
+<dd><p>Resolve value with precedence: direct → config → env → default.</p>
+<p>This follows the Scholar module’s CascadeConfig pattern where
+YAML config takes higher priority than environment variables.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>key</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Configuration key (e.g., “logging.level”)</p></li>
+<li><p><strong>direct_val</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Direct value (highest precedence)</p></li>
+<li><p><strong>default</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Default value (lowest precedence)</p></li>
+<li><p><strong>type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Type" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Type</span></code></a></span>) – Type conversion (str, int, float, bool, list)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resolved value</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.get_nested">
+<span class="sig-name descname"><span class="pre">get_nested</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">keys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.get_nested"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.get_nested" title="Link to this definition"></a></dt>
+<dd><p>Get nested value from original config structure.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>*keys</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Keys to traverse (e.g., “browser”, “screenshots_dir”)</p></li>
+<li><p><strong>default</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Default value if not found</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Nested value</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.config_path">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">config_path</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexConfig.config_path" title="Link to this definition"></a></dt>
+<dd><p>Get the path to the loaded config file.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.raw">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">raw</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><span class="pre">dict</span></a></span><a class="headerlink" href="#scitex.config.ScitexConfig.raw" title="Link to this definition"></a></dt>
+<dd><p>Get raw configuration data (original nested structure).</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.flat">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">flat</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><span class="pre">dict</span></a></span><a class="headerlink" href="#scitex.config.ScitexConfig.flat" title="Link to this definition"></a></dt>
+<dd><p>Get flattened configuration data.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexConfig.print">
+<span class="sig-name descname"><span class="pre">print</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_ScitexConfig.html#ScitexConfig.print"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexConfig.print" title="Link to this definition"></a></dt>
+<dd><p>Print configuration resolution log.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.get_config">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">get_config</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_ScitexConfig.html#get_config"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.get_config" title="Link to this definition"></a></dt>
+<dd><p>Get ScitexConfig instance.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>config_path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Path to custom config. If None, returns cached default instance.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Configuration instance</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.config.ScitexConfig" title="scitex_config._ScitexConfig.ScitexConfig"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.load_yaml">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">load_yaml</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_ScitexConfig.html#load_yaml"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.load_yaml" title="Link to this definition"></a></dt>
+<dd><p>Load YAML file with environment variable substitution.</p>
+<p>Supports ${VAR:-default} syntax for environment variable expansion.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to YAML file</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Parsed YAML with environment variables substituted</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">ScitexPaths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">base_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_paths.html#ScitexPaths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths" title="Link to this definition"></a></dt>
+<dd><p>Centralized path manager for SciTeX directories.</p>
+<p>All paths are derived from SCITEX_DIR (default: ~/.scitex).
+Priority: direct_val → SCITEX_DIR env → .env file → default</p>
+<dl class="simple">
+<dt>Directory Structure:</dt><dd><p>$SCITEX_DIR/
+├── browser/              # Browser profiles and data
+│   ├── screenshots/      # Browser debugging screenshots
+│   ├── sessions/         # Shared browser sessions
+│   └── persistent/       # Persistent browser profiles
+├── cache/                # General cache
+│   └── functions/        # Function cache (joblib)
+├── capture/              # Screen captures
+├── impact_factor_cache/  # Impact factor data cache
+├── logs/                 # Log files
+├── openathens_cache/     # OpenAthens auth cache
+├── rng/                  # Random number generator state
+├── scholar/              # Scholar module data
+│   ├── cache/            # Scholar-specific cache
+│   └── library/          # PDF library
+├── screenshots/          # General screenshots
+├── test_monitor/         # Test monitoring screenshots
+└── writer/               # Writer module data</p>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">base_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_paths.html#ScitexPaths.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize ScitexPaths.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>base_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Explicit base directory. If None, uses SCITEX_DIR env var
+or falls back to ~/.scitex.</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.base">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">base</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.base" title="Link to this definition"></a></dt>
+<dd><p>Base SciTeX directory ($SCITEX_DIR or ~/.scitex).</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.logs">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">logs</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.logs" title="Link to this definition"></a></dt>
+<dd><p>Log files directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.cache" title="Link to this definition"></a></dt>
+<dd><p>General cache directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.capture">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">capture</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.capture" title="Link to this definition"></a></dt>
+<dd><p>Screen capture directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.screenshots">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">screenshots</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.screenshots" title="Link to this definition"></a></dt>
+<dd><p>General screenshots directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.rng">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">rng</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.rng" title="Link to this definition"></a></dt>
+<dd><p>Random number generator state directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.browser">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">browser</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.browser" title="Link to this definition"></a></dt>
+<dd><p>Browser module base directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.browser_screenshots">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">browser_screenshots</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.browser_screenshots" title="Link to this definition"></a></dt>
+<dd><p>Browser debugging screenshots.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.browser_sessions">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">browser_sessions</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.browser_sessions" title="Link to this definition"></a></dt>
+<dd><p>Shared browser sessions.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.browser_persistent">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">browser_persistent</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.browser_persistent" title="Link to this definition"></a></dt>
+<dd><p>Persistent browser profiles.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.test_monitor">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">test_monitor</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.test_monitor" title="Link to this definition"></a></dt>
+<dd><p>Test monitoring screenshots directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.function_cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">function_cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.function_cache" title="Link to this definition"></a></dt>
+<dd><p>Function cache (joblib memory).</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.impact_factor_cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">impact_factor_cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.impact_factor_cache" title="Link to this definition"></a></dt>
+<dd><p>Impact factor data cache.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.openathens_cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">openathens_cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.openathens_cache" title="Link to this definition"></a></dt>
+<dd><p>OpenAthens authentication cache.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.scholar">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">scholar</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.scholar" title="Link to this definition"></a></dt>
+<dd><p>Scholar module base directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.scholar_cache">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">scholar_cache</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.scholar_cache" title="Link to this definition"></a></dt>
+<dd><p>Scholar-specific cache directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.scholar_library">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">scholar_library</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.scholar_library" title="Link to this definition"></a></dt>
+<dd><p>Scholar PDF library directory.</p>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.writer">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">writer</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.config.ScitexPaths.writer" title="Link to this definition"></a></dt>
+<dd><p>Writer module directory.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.resolve">
+<span class="sig-name descname"><span class="pre">resolve</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">direct_val</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_paths.html#ScitexPaths.resolve"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.resolve" title="Link to this definition"></a></dt>
+<dd><p>Resolve a path with priority: direct_val → default from SCITEX_DIR.</p>
+<p>This is the recommended method for modules that accept optional path
+parameters. It follows the same pattern as PriorityConfig.resolve().</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path_name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Name of the path property (e.g., “cache”, “logs”, “scholar_library”)</p></li>
+<li><p><strong>direct_val</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Direct value (highest precedence). If None, uses default.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resolved path</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">paths</span> <span class="o">=</span> <span class="n">ScitexPaths</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># User didn&#39;t provide path -&gt; use default</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">cache_dir</span> <span class="o">=</span> <span class="n">paths</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;cache&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># User provided custom path -&gt; use it</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">cache_dir</span> <span class="o">=</span> <span class="n">paths</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;cache&quot;</span><span class="p">,</span> <span class="s2">&quot;/custom/cache&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>Usage in modules:
+&gt;&gt;&gt; class MyModule:
+…     def __init__(self, cache_dir=None):
+…         self.cache_dir = get_paths().resolve(“cache”, cache_dir)</p>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.ensure_dir">
+<span class="sig-name descname"><span class="pre">ensure_dir</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_paths.html#ScitexPaths.ensure_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.ensure_dir" title="Link to this definition"></a></dt>
+<dd><p>Ensure directory exists, creating if necessary.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Directory path to ensure exists.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same path, guaranteed to exist.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.ensure_all">
+<span class="sig-name descname"><span class="pre">ensure_all</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_paths.html#ScitexPaths.ensure_all"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.ensure_all" title="Link to this definition"></a></dt>
+<dd><p>Create all standard directories.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.ScitexPaths.list_all">
+<span class="sig-name descname"><span class="pre">list_all</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_paths.html#ScitexPaths.list_all"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.ScitexPaths.list_all" title="Link to this definition"></a></dt>
+<dd><p>List all configured paths.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Dictionary of path names to Path objects.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.get_paths">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">get_paths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">base_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_paths.html#get_paths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.get_paths" title="Link to this definition"></a></dt>
+<dd><p>Get ScitexPaths instance.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>base_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Explicit base directory. If None, returns cached default instance.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Path manager instance.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.config.ScitexPaths" title="scitex_config._paths.ScitexPaths"><code class="xref py py-class docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">PriorityConfig</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_dict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auto_uppercase</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_PriorityConfig.html#PriorityConfig"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig" title="Link to this definition"></a></dt>
+<dd><p>Universal config resolver with precedence: direct → config_dict → env → default</p>
+<p>Config dict (from YAML or passed dict) takes priority over env variables.
+This follows the Scholar module’s CascadeConfig pattern.</p>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_config</span><span class="w"> </span><span class="kn">import</span> <span class="n">PriorityConfig</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">config</span> <span class="o">=</span> <span class="n">PriorityConfig</span><span class="p">(</span><span class="n">config_dict</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;port&quot;</span><span class="p">:</span> <span class="mi">3000</span><span class="p">},</span> <span class="n">env_prefix</span><span class="o">=</span><span class="s2">&quot;SCITEX_&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">port</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;port&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="mi">8000</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
+<span class="go">3000  # from config_dict (highest after direct)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># With env: SCITEX_PORT=5000 python script.py</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">port</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;port&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="mi">8000</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
+<span class="go">3000  # config_dict takes precedence over env</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">port</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">resolve</span><span class="p">(</span><span class="s2">&quot;port&quot;</span><span class="p">,</span> <span class="mi">9000</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="mi">8000</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
+<span class="go">9000  # direct value takes highest precedence</span>
+</pre></div>
+</div>
+</div>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS">
+<span class="sig-name descname"><span class="pre">SENSITIVE_EXPRESSIONS</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">['API',</span> <span class="pre">'PASSWORD',</span> <span class="pre">'SECRET',</span> <span class="pre">'TOKEN',</span> <span class="pre">'KEY',</span> <span class="pre">'PASS',</span> <span class="pre">'AUTH',</span> <span class="pre">'CREDENTIAL',</span> <span class="pre">'PRIVATE',</span> <span class="pre">'CERT']</span></span><a class="headerlink" href="#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">config_dict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auto_uppercase</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize PriorityConfig.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>config_dict</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]</span>) – Dictionary with configuration values</p></li>
+<li><p><strong>env_prefix</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Prefix for environment variables (e.g., “<a href="#id3"><span class="problematic" id="id4">SCITEX_</span></a>”)</p></li>
+<li><p><strong>auto_uppercase</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to uppercase keys for env lookup</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.resolution_log">
+<span class="sig-name descname"><span class="pre">resolution_log</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><span class="pre">Dict</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">,</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><span class="pre">Any</span></a><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#scitex.config.PriorityConfig.resolution_log" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.get">
+<span class="sig-name descname"><span class="pre">get</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.get"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.get" title="Link to this definition"></a></dt>
+<dd><p>Get value from config dict only.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.resolve">
+<span class="sig-name descname"><span class="pre">resolve</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">direct_val</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;class</span> <span class="pre">'str'&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.resolve"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.resolve" title="Link to this definition"></a></dt>
+<dd><p>Get value with precedence hierarchy.</p>
+<p>Precedence: direct → config_dict → env → default</p>
+<p>This follows the Scholar module’s CascadeConfig pattern where
+config dict takes higher priority than environment variables.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>key</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Configuration key to resolve</p></li>
+<li><p><strong>direct_val</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Direct value (highest precedence)</p></li>
+<li><p><strong>default</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Default value if not found elsewhere</p></li>
+<li><p><strong>type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Type" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Type</span></code></a></span>) – Type conversion (str, int, float, bool, list)</p></li>
+<li><p><strong>mask</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>]</span>) – Override automatic masking of sensitive values</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resolved configuration value</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.print_resolutions">
+<span class="sig-name descname"><span class="pre">print_resolutions</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.print_resolutions"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.print_resolutions" title="Link to this definition"></a></dt>
+<dd><p>Print how each config was resolved.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.config.PriorityConfig.clear_log">
+<span class="sig-name descname"><span class="pre">clear_log</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_PriorityConfig.html#PriorityConfig.clear_log"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.PriorityConfig.clear_log" title="Link to this definition"></a></dt>
+<dd><p>Clear resolution log.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.get_scitex_dir">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">get_scitex_dir</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">direct_val</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_PriorityConfig.html#get_scitex_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.get_scitex_dir" title="Link to this definition"></a></dt>
+<dd><p>Get SCITEX_DIR with priority: direct → env → default.</p>
+<p>This is a convenience function for the most common use case.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>direct_val</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Direct value (highest precedence)</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resolved SCITEX_DIR path</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.load_dotenv">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">load_dotenv</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dotenv_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">walk_up</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stop_at</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_PriorityConfig.html#load_dotenv"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.load_dotenv" title="Link to this definition"></a></dt>
+<dd><p>Load environment variables from .env file(s).</p>
+<dl>
+<dt>Default behavior (<code class="docutils literal notranslate"><span class="pre">walk_up=False</span></code>, backward compatible):</dt><dd><p>Searches for .env file in the following order, loading the first match:
+1. Explicit <code class="docutils literal notranslate"><span class="pre">dotenv_path</span></code> if provided
+2. Current working directory (<code class="docutils literal notranslate"><span class="pre">cwd/.env</span></code>)
+3. User home directory (<code class="docutils literal notranslate"><span class="pre">$HOME/.env</span></code>)</p>
+</dd>
+<dt>Parent-walking behavior (<code class="docutils literal notranslate"><span class="pre">walk_up=True</span></code>, opt-in):</dt><dd><p>Walks parent directories starting from <code class="docutils literal notranslate"><span class="pre">cwd</span></code>, looking for <code class="docutils literal notranslate"><span class="pre">.env</span></code>
+at each level. Stops when reaching <code class="docutils literal notranslate"><span class="pre">stop_at</span></code> (or <code class="docutils literal notranslate"><span class="pre">$HOME</span></code> if not
+given) or the filesystem root. <strong>All</strong> <code class="docutils literal notranslate"><span class="pre">.env</span></code> files found are loaded,
+with the most-distant parent loaded first so that closer-to-cwd values
+take precedence (closer .env wins). An existing process env var is
+never overridden by any .env (process env &gt; closest .env &gt; … &gt; root .env).</p>
+<p>Note: <code class="docutils literal notranslate"><span class="pre">walk_up=True</span></code> is ignored if <code class="docutils literal notranslate"><span class="pre">dotenv_path</span></code> is explicitly given.</p>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dotenv_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Path to .env file. If None, searches default locations.</p></li>
+<li><p><strong>walk_up</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True (and <code class="docutils literal notranslate"><span class="pre">dotenv_path</span></code> not given), walk parent dirs from cwd.
+Default False for backward compatibility — new callers should pass True.</p></li>
+<li><p><strong>stop_at</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Directory at which to stop the upward walk (inclusive — its <code class="docutils literal notranslate"><span class="pre">.env</span></code>
+is considered). If None, stops at <code class="docutils literal notranslate"><span class="pre">$HOME</span></code> (or filesystem root if
+<code class="docutils literal notranslate"><span class="pre">$HOME</span></code> is not a parent of cwd). Only used when <code class="docutils literal notranslate"><span class="pre">walk_up=True</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>True if at least one .env file was found and loaded, False otherwise.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.parse_src_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">parse_src_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_env_loader.html#parse_src_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.parse_src_file" title="Link to this definition"></a></dt>
+<dd><p>Parse a bash-compatible <code class="docutils literal notranslate"><span class="pre">.src</span></code>/<code class="docutils literal notranslate"><span class="pre">.env</span></code> file and extract env variables.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>filepath</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to the file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Dictionary of variable names to values.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.load_env_from_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">load_env_from_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_env_loader.html#load_env_from_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.load_env_from_path" title="Link to this definition"></a></dt>
+<dd><p>Load environment variables from a file or directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Path to a <code class="docutils literal notranslate"><span class="pre">.src</span></code> file or directory containing <code class="docutils literal notranslate"><span class="pre">*.src</span></code> files.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>All loaded environment variables.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.config.load_scitex_env">
+<span class="sig-prename descclassname"><span class="pre">scitex.config.</span></span><span class="sig-name descname"><span class="pre">load_scitex_env</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_config/_env_loader.html#load_scitex_env"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.config.load_scitex_env" title="Link to this definition"></a></dt>
+<dd><p>Load environment variables from <code class="docutils literal notranslate"><span class="pre">$SCITEX_ENV_SRC</span></code> if set.</p>
+<p>This function should be called early in the MCP server startup.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Number of environment variables loaded.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/container.html b/src/scitex/_sphinx_html/source/api/container.html
new file mode 100644
index 000000000..01987d762
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/container.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>container Module (stx.container) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
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new file mode 100644
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/context.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.context">
+<span id="context-module-stx-context"></span><h1>context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)<a class="headerlink" href="#module-scitex.context" title="Link to this heading"></a></h1>
+<p>scitex-context — execution-context detection (script vs notebook vs IPython) + output suppression.</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.detect_environment">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">detect_environment</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_detect_environment.html#detect_environment"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.detect_environment" title="Link to this definition"></a></dt>
+<dd><p>Detect the current execution environment.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>One of: ‘script’, ‘jupyter’, ‘ipython’, ‘interactive’, ‘unknown’</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Literal" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Literal</span></code></a>[<code class="docutils literal notranslate"><span class="pre">'script'</span></code>, <code class="docutils literal notranslate"><span class="pre">'jupyter'</span></code>, <code class="docutils literal notranslate"><span class="pre">'ipython'</span></code>, <code class="docutils literal notranslate"><span class="pre">'interactive'</span></code>, <code class="docutils literal notranslate"><span class="pre">'unknown'</span></code>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">env</span> <span class="o">=</span> <span class="n">detect_environment</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Running in: </span><span class="si">{</span><span class="n">env</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+<span class="go">Running in: script</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.get_notebook_directory">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">get_notebook_directory</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_get_notebook_path.html#get_notebook_directory"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.get_notebook_directory" title="Link to this definition"></a></dt>
+<dd><p>Get the directory containing the current notebook.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Directory path, or None if not in a notebook</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.get_notebook_info_simple">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">get_notebook_info_simple</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_get_notebook_path.html#get_notebook_info_simple"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.get_notebook_info_simple" title="Link to this definition"></a></dt>
+<dd><p>Simple method to get notebook info using current working directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>(notebook_name, notebook_directory)</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.get_notebook_name">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">get_notebook_name</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_get_notebook_path.html#get_notebook_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.get_notebook_name" title="Link to this definition"></a></dt>
+<dd><p>Get just the name of the current notebook (without path).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Notebook filename, or None if not in a notebook</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">name</span> <span class="o">=</span> <span class="n">get_notebook_name</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="k">if</span> <span class="n">name</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Notebook: </span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.get_notebook_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">get_notebook_path</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_get_notebook_path.html#get_notebook_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.get_notebook_path" title="Link to this definition"></a></dt>
+<dd><p>Get the full path of the current Jupyter notebook.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Full path to the notebook file, or None if not in a notebook</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">path</span> <span class="o">=</span> <span class="n">get_notebook_path</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="k">if</span> <span class="n">path</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Running in notebook: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.get_output_directory">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">get_output_directory</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">specified_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">env_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_detect_environment.html#get_output_directory"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.get_output_directory" title="Link to this definition"></a></dt>
+<dd><p>Get the appropriate output directory based on environment.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>specified_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – The path specified by the user</p></li>
+<li><p><strong>env_type</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Literal" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Literal</span></code></a>[<code class="docutils literal notranslate"><span class="pre">'script'</span></code>, <code class="docutils literal notranslate"><span class="pre">'jupyter'</span></code>, <code class="docutils literal notranslate"><span class="pre">'ipython'</span></code>, <code class="docutils literal notranslate"><span class="pre">'interactive'</span></code>, <code class="docutils literal notranslate"><span class="pre">'unknown'</span></code>]</span>) – Override environment detection</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(output_directory, should_use_temp)</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">output_dir</span><span class="p">,</span> <span class="n">use_temp</span> <span class="o">=</span> <span class="n">get_output_directory</span><span class="p">(</span><span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Save to: </span><span class="si">{</span><span class="n">output_dir</span><span class="si">}</span><span class="s2">, Temp: </span><span class="si">{</span><span class="n">use_temp</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+<span class="go">Save to: ./script_out/data.csv, Temp: False</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.is_ipython">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">is_ipython</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_detect_environment.html#is_ipython"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.is_ipython" title="Link to this definition"></a></dt>
+<dd><p>Check if running in IPython (console or notebook).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.is_notebook">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">is_notebook</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_detect_environment.html#is_notebook"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.is_notebook" title="Link to this definition"></a></dt>
+<dd><p>Check if running in Jupyter notebook.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.is_script">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">is_script</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_detect_environment.html#is_script"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.is_script" title="Link to this definition"></a></dt>
+<dd><p>Check if running as a script.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.quiet">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">quiet</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">suppress</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.context.quiet" title="Link to this definition"></a></dt>
+<dd><p>A context manager that suppresses stdout and stderr.</p>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<dl class="simple">
+<dt>with suppress_output():</dt><dd><p>print(“This will not be printed to the console.”)</p>
+</dd>
+</dl>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.context.suppress_output">
+<span class="sig-prename descclassname"><span class="pre">scitex.context.</span></span><span class="sig-name descname"><span class="pre">suppress_output</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">suppress</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_context/_suppress_output.html#suppress_output"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.context.suppress_output" title="Link to this definition"></a></dt>
+<dd><p>A context manager that suppresses stdout and stderr.</p>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<dl class="simple">
+<dt>with suppress_output():</dt><dd><p>print(“This will not be printed to the console.”)</p>
+</dd>
+</dl>
+</div>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/cv.html b/src/scitex/_sphinx_html/source/api/cv.html
new file mode 100644
index 000000000..27dda161c
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/cv.html
@@ -0,0 +1,1147 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>cv Module (stx.cv) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/cv.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.cv">
+<span id="cv-module-stx-cv"></span><h1>cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)<a class="headerlink" href="#module-scitex.cv" title="Link to this heading"></a></h1>
+<p>scitex-cv — small cv2-based image utilities (standalone).</p>
+<p>Provides reusable cv2-based utilities for image processing:
+- I/O: load, save, color conversions
+- Transform: resize, rotate, flip, crop, pad
+- Filters: blur, sharpen, edge detection, threshold, denoise
+- Draw: rectangle, circle, line, text, polylines, arrow</p>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex.cv</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">cv</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Load and process an image</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">img</span> <span class="o">=</span> <span class="n">cv</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;input.png&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">img</span> <span class="o">=</span> <span class="n">cv</span><span class="o">.</span><span class="n">resize</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">scale</span><span class="o">=</span><span class="mf">0.5</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">img</span> <span class="o">=</span> <span class="n">cv</span><span class="o">.</span><span class="n">blur</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">ksize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">edges</span> <span class="o">=</span> <span class="n">cv</span><span class="o">.</span><span class="n">edge_detect</span><span class="p">(</span><span class="n">img</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;canny&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">cv</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">edges</span><span class="p">,</span> <span class="s2">&quot;edges.png&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.load">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">load</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_io.html#load"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.load" title="Link to this definition"></a></dt>
+<dd><p>Load an image from file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Image file path.</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, load as color (BGR). If False, load as grayscale.</p></li>
+<li><p><strong>alpha</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, preserve alpha channel (BGRA).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Image array in BGR or grayscale format.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.save">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">save</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">quality</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">95</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_io.html#save"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.save" title="Link to this definition"></a></dt>
+<dd><p>Save an image to file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Image array (BGR or grayscale).</p></li>
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Output file path.</p></li>
+<li><p><strong>quality</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – JPEG quality (0-100) or PNG compression (0-9).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Path to saved file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.to_rgb">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">to_rgb</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_io.html#to_rgb"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.to_rgb" title="Link to this definition"></a></dt>
+<dd><p>Convert BGR image to RGB.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – BGR image.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>RGB image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.to_bgr">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">to_bgr</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_io.html#to_bgr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.to_bgr" title="Link to this definition"></a></dt>
+<dd><p>Convert RGB image to BGR.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – RGB image.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>BGR image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.to_gray">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">to_gray</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_io.html#to_gray"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.to_gray" title="Link to this definition"></a></dt>
+<dd><p>Convert image to grayscale.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Color image (BGR or RGB).</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Grayscale image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.resize">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">resize</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scale</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">interpolation</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'linear'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_transform.html#resize"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.resize" title="Link to this definition"></a></dt>
+<dd><p>Resize an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>size</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]]</span>) – Target size as (width, height).</p></li>
+<li><p><strong>scale</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a>]</span>) – Scale factor (alternative to size).</p></li>
+<li><p><strong>interpolation</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Interpolation method: ‘nearest’, ‘linear’, ‘cubic’, ‘area’, ‘lanczos’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Resized image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.rotate">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">rotate</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">angle</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">center</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scale</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_transform.html#rotate"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.rotate" title="Link to this definition"></a></dt>
+<dd><p>Rotate an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>angle</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a></span>) – Rotation angle in degrees (counter-clockwise).</p></li>
+<li><p><strong>center</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]]</span>) – Rotation center. Defaults to image center.</p></li>
+<li><p><strong>scale</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a></span>) – Scale factor.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Rotated image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.flip">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">flip</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">direction</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'horizontal'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_transform.html#flip"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.flip" title="Link to this definition"></a></dt>
+<dd><p>Flip an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>direction</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Flip direction: ‘horizontal’, ‘vertical’, or ‘both’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Flipped image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.crop">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">crop</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">width</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_transform.html#crop"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.crop" title="Link to this definition"></a></dt>
+<dd><p>Crop a region from an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>x</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Top-left corner coordinates.</p></li>
+<li><p><strong>y</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Top-left corner coordinates.</p></li>
+<li><p><strong>width</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Crop dimensions.</p></li>
+<li><p><strong>height</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Crop dimensions.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Cropped image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.pad">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">pad</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">top</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bottom</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">left</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">right</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'constant'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_transform.html#pad"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.pad" title="Link to this definition"></a></dt>
+<dd><p>Pad an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>top</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Padding sizes.</p></li>
+<li><p><strong>bottom</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Padding sizes.</p></li>
+<li><p><strong>left</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Padding sizes.</p></li>
+<li><p><strong>right</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Padding sizes.</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#Ellipsis" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">...</span></code></a>]]</span>) – Padding color for constant mode.</p></li>
+<li><p><strong>mode</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Padding mode: ‘constant’, ‘reflect’, ‘replicate’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Padded image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.blur">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">blur</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ksize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'gaussian'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_filters.html#blur"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.blur" title="Link to this definition"></a></dt>
+<dd><p>Apply blur to an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>ksize</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Kernel size (must be odd).</p></li>
+<li><p><strong>method</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Blur method: ‘gaussian’, ‘median’, ‘box’, ‘bilateral’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Blurred image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.sharpen">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">sharpen</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strength</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_filters.html#sharpen"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.sharpen" title="Link to this definition"></a></dt>
+<dd><p>Sharpen an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>strength</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a></span>) – Sharpening strength.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Sharpened image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.edge_detect">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">edge_detect</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'canny'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">low</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">high</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">150</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_filters.html#edge_detect"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.edge_detect" title="Link to this definition"></a></dt>
+<dd><p>Detect edges in an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>method</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Edge detection method: ‘canny’, ‘sobel’, ‘laplacian’.</p></li>
+<li><p><strong>low</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Thresholds for Canny detector.</p></li>
+<li><p><strong>high</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Thresholds for Canny detector.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Edge image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.threshold">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">threshold</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thresh</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">127</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">maxval</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">255</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'binary'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_filters.html#threshold"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.threshold" title="Link to this definition"></a></dt>
+<dd><p>Apply thresholding to an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>thresh</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Threshold value.</p></li>
+<li><p><strong>maxval</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum value.</p></li>
+<li><p><strong>method</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Threshold method: ‘binary’, ‘binary_inv’, ‘trunc’, ‘tozero’,
+‘tozero_inv’, ‘otsu’, ‘adaptive_mean’, ‘adaptive_gaussian’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Thresholded image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.denoise">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">denoise</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strength</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'fastNl'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_filters.html#denoise"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.denoise" title="Link to this definition"></a></dt>
+<dd><p>Denoise an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image.</p></li>
+<li><p><strong>strength</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Denoising strength.</p></li>
+<li><p><strong>method</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Denoising method: ‘fastNl’, ‘bilateral’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Denoised image.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.rectangle">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">rectangle</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pt1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pt2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thickness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">filled</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_draw.html#rectangle"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.rectangle" title="Link to this definition"></a></dt>
+<dd><p>Draw a rectangle on an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image (modified in place).</p></li>
+<li><p><strong>pt1</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Top-left corner (x, y).</p></li>
+<li><p><strong>pt2</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Bottom-right corner (x, y).</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – BGR color.</p></li>
+<li><p><strong>thickness</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Line thickness (-1 for filled).</p></li>
+<li><p><strong>filled</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, fill the rectangle.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Image with rectangle.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.circle">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">circle</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">center</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thickness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">filled</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_draw.html#circle"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.circle" title="Link to this definition"></a></dt>
+<dd><p>Draw a circle on an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image (modified in place).</p></li>
+<li><p><strong>center</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Center coordinates (x, y).</p></li>
+<li><p><strong>radius</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Circle radius.</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – BGR color.</p></li>
+<li><p><strong>thickness</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Line thickness.</p></li>
+<li><p><strong>filled</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, fill the circle.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Image with circle.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.line">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">line</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pt1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pt2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thickness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_draw.html#line"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.line" title="Link to this definition"></a></dt>
+<dd><p>Draw a line on an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image (modified in place).</p></li>
+<li><p><strong>pt1</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Start point (x, y).</p></li>
+<li><p><strong>pt2</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – End point (x, y).</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – BGR color.</p></li>
+<li><p><strong>thickness</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Line thickness.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Image with line.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.text">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">text</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">text</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">position</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(255,</span> <span class="pre">255,</span> <span class="pre">255)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scale</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thickness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">font</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'simplex'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_draw.html#text"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.text" title="Link to this definition"></a></dt>
+<dd><p>Draw text on an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image (modified in place).</p></li>
+<li><p><strong>text</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Text to draw.</p></li>
+<li><p><strong>position</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Bottom-left corner of text (x, y).</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – BGR color.</p></li>
+<li><p><strong>scale</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a></span>) – Font scale.</p></li>
+<li><p><strong>thickness</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Text thickness.</p></li>
+<li><p><strong>font</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Font type: ‘simplex’, ‘plain’, ‘duplex’, ‘complex’, ‘triplex’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Image with text.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.polylines">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">polylines</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">points</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">closed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thickness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_draw.html#polylines"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.polylines" title="Link to this definition"></a></dt>
+<dd><p>Draw polylines on an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image (modified in place).</p></li>
+<li><p><strong>points</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Array of points with shape (N, 1, 2) or (N, 2).</p></li>
+<li><p><strong>closed</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to close the polyline.</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – BGR color.</p></li>
+<li><p><strong>thickness</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Line thickness.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Image with polylines.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.cv.arrow">
+<span class="sig-prename descclassname"><span class="pre">scitex.cv.</span></span><span class="sig-name descname"><span class="pre">arrow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">img</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pt1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pt2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thickness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tip_length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_cv/_draw.html#arrow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.cv.arrow" title="Link to this definition"></a></dt>
+<dd><p>Draw an arrowed line on an image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>img</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Input image (modified in place).</p></li>
+<li><p><strong>pt1</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Start point (x, y).</p></li>
+<li><p><strong>pt2</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – End point (arrow tip) (x, y).</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – BGR color.</p></li>
+<li><p><strong>thickness</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Line thickness.</p></li>
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+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Image with arrow.</p>
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diff --git a/src/scitex/_sphinx_html/source/api/dataset.html b/src/scitex/_sphinx_html/source/api/dataset.html
new file mode 100644
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/dataset.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="dataset-module-stx-dataset">
+<h1>Dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)<a class="headerlink" href="#dataset-module-stx-dataset" title="Link to this heading"></a></h1>
+<p>Unified access to public scientific datasets from major neuroscience
+and biomedical repositories. Search, browse, and fetch datasets
+without learning each repository’s API.</p>
+<section id="supported-sources">
+<h2>Supported Sources<a class="headerlink" href="#supported-sources" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 25.0%" />
+<col style="width: 75.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Source</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference external" href="https://dandiarchive.org">DANDI</a></p></td>
+<td><p>Neurophysiology data (NWB format) – electrophysiology, calcium imaging</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference external" href="https://openneuro.org">OpenNeuro</a></p></td>
+<td><p>Brain imaging data (BIDS format) – fMRI, EEG, MEG, PET</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference external" href="https://physionet.org">PhysioNet</a></p></td>
+<td><p>Physiological signal data – ECG, EEG, clinical waveforms</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="quick-start">
+<h2>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Search across all sources</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s2">&quot;epilepsy EEG&quot;</span><span class="p">)</span>
+
+<span class="c1"># Fetch a specific dataset</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">fetch</span><span class="p">(</span><span class="s2">&quot;dandi&quot;</span><span class="p">,</span> <span class="n">dandiset_id</span><span class="o">=</span><span class="s2">&quot;000003&quot;</span><span class="p">)</span>
+
+<span class="c1"># List available sources</span>
+<span class="n">sources</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">list_sources</span><span class="p">()</span>
+<span class="c1"># [&#39;dandi&#39;, &#39;openneuro&#39;, &#39;physionet&#39;]</span>
+</pre></div>
+</div>
+</section>
+<section id="key-functions">
+<h2>Key Functions<a class="headerlink" href="#key-functions" title="Link to this heading"></a></h2>
+<section id="search-query-source-none">
+<h3><code class="docutils literal notranslate"><span class="pre">search(query,</span> <span class="pre">source=None)</span></code><a class="headerlink" href="#search-query-source-none" title="Link to this heading"></a></h3>
+<p>Search for datasets across one or all supported repositories.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Search all sources</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s2">&quot;motor imagery BCI&quot;</span><span class="p">)</span>
+
+<span class="c1"># Search a specific source</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s2">&quot;sleep staging&quot;</span><span class="p">,</span> <span class="n">source</span><span class="o">=</span><span class="s2">&quot;physionet&quot;</span><span class="p">)</span>
+
+<span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">results</span><span class="p">:</span>
+    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">r</span><span class="o">.</span><span class="n">source</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">r</span><span class="o">.</span><span class="n">title</span><span class="si">}</span><span class="s2"> (</span><span class="si">{</span><span class="n">r</span><span class="o">.</span><span class="n">id</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="fetch-source-kwargs">
+<h3><code class="docutils literal notranslate"><span class="pre">fetch(source,</span> <span class="pre">**kwargs)</span></code><a class="headerlink" href="#fetch-source-kwargs" title="Link to this heading"></a></h3>
+<p>Download or stream a dataset from a specific source.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Fetch from DANDI</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">fetch</span><span class="p">(</span><span class="s2">&quot;dandi&quot;</span><span class="p">,</span> <span class="n">dandiset_id</span><span class="o">=</span><span class="s2">&quot;000003&quot;</span><span class="p">)</span>
+
+<span class="c1"># Fetch from OpenNeuro</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">fetch</span><span class="p">(</span><span class="s2">&quot;openneuro&quot;</span><span class="p">,</span> <span class="n">dataset_id</span><span class="o">=</span><span class="s2">&quot;ds000117&quot;</span><span class="p">)</span>
+
+<span class="c1"># Fetch from PhysioNet</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">fetch</span><span class="p">(</span><span class="s2">&quot;physionet&quot;</span><span class="p">,</span> <span class="n">database</span><span class="o">=</span><span class="s2">&quot;mimic-iv&quot;</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;2.0&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="list-sources">
+<h3><code class="docutils literal notranslate"><span class="pre">list_sources()</span></code><a class="headerlink" href="#list-sources" title="Link to this heading"></a></h3>
+<p>List all available dataset sources and their status.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">sources</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">list_sources</span><span class="p">()</span>
+<span class="c1"># [&#39;dandi&#39;, &#39;openneuro&#39;, &#39;physionet&#39;]</span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="local-database">
+<h2>Local Database<a class="headerlink" href="#local-database" title="Link to this heading"></a></h2>
+<p>Build a local search index for faster repeated queries:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Build/update the local database</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">db_build</span><span class="p">(</span><span class="n">sources</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;dandi&quot;</span><span class="p">,</span> <span class="s2">&quot;openneuro&quot;</span><span class="p">])</span>
+
+<span class="c1"># Search the local index (fast, offline)</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">db_search</span><span class="p">(</span><span class="s2">&quot;resting state fMRI&quot;</span><span class="p">)</span>
+
+<span class="c1"># Get database statistics</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">dataset</span><span class="o">.</span><span class="n">db_stats</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-access">
+<h2>CLI Access<a class="headerlink" href="#cli-access" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Search datasets</span>
+scitex<span class="w"> </span>dataset<span class="w"> </span>search<span class="w"> </span><span class="s2">&quot;epilepsy EEG&quot;</span>
+
+<span class="c1"># Fetch a dataset</span>
+scitex<span class="w"> </span>dataset<span class="w"> </span>fetch<span class="w"> </span>dandi<span class="w"> </span>--dandiset-id<span class="w"> </span><span class="m">000003</span>
+
+<span class="c1"># List sources</span>
+scitex<span class="w"> </span>dataset<span class="w"> </span>list-sources
+
+<span class="c1"># Build local database</span>
+scitex<span class="w"> </span>dataset<span class="w"> </span>db-build
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.dataset">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.dataset" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
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+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/source/api/datetime.html b/src/scitex/_sphinx_html/source/api/datetime.html
new file mode 100644
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+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <title>datetime Module (stx.datetime) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
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new file mode 100644
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+    </nav>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+      <li class="breadcrumb-item active">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</li>
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+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.db">
+<span id="db-module-stx-db"></span><h1>db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)<a class="headerlink" href="#module-scitex.db" title="Link to this heading"></a></h1>
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diff --git a/src/scitex/_sphinx_html/source/api/decorators.html b/src/scitex/_sphinx_html/source/api/decorators.html
new file mode 100644
index 000000000..10405d4df
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/decorators.html
@@ -0,0 +1,749 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Decorators Module (stx.decorators) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/decorators.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="decorators-module-stx-decorators">
+<h1>Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)<a class="headerlink" href="#decorators-module-stx-decorators" title="Link to this heading"></a></h1>
+<p>Function decorators for type conversion, batching, caching, and more.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.decorators</span><span class="w"> </span><span class="kn">import</span> <span class="n">torch_fn</span><span class="p">,</span> <span class="n">batch_fn</span><span class="p">,</span> <span class="n">cache_disk</span><span class="p">,</span> <span class="n">timeout</span>
+
+<span class="nd">@torch_fn</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">process</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Auto-converts inputs to torch tensors, outputs back.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">x</span> <span class="o">*</span> <span class="mi">2</span>
+
+<span class="nd">@batch_fn</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">predict</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">batch_size</span><span class="o">=</span><span class="mi">32</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Process data in batches with progress bar.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">model</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+
+<span class="nd">@cache_disk</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">expensive_computation</span><span class="p">(</span><span class="n">params</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Results cached to disk for reuse.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">heavy_compute</span><span class="p">(</span><span class="n">params</span><span class="p">)</span>
+
+<span class="nd">@timeout</span><span class="p">(</span><span class="n">seconds</span><span class="o">=</span><span class="mi">30</span><span class="p">)</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">risky_call</span><span class="p">():</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Raises TimeoutError if exceeds 30s.&quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">external_api</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="type-conversion">
+<h2>Type Conversion<a class="headerlink" href="#type-conversion" title="Link to this heading"></a></h2>
+<p>Auto-convert between data frameworks:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;torch_fn</span></code> – Inputs to PyTorch tensors, outputs back to original type</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;numpy_fn</span></code> – Inputs to NumPy arrays</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;pandas_fn</span></code> – Inputs to pandas objects</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;xarray_fn</span></code> – Inputs to xarray objects</p></li>
+</ul>
+</section>
+<section id="batch-processing">
+<h2>Batch Processing<a class="headerlink" href="#batch-processing" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;batch_fn</span></code> – Split input into batches with tqdm progress</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;batch_numpy_fn</span></code> – NumPy conversion + batching</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;batch_torch_fn</span></code> – PyTorch conversion + batching</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;batch_pandas_fn</span></code> – Pandas conversion + batching</p></li>
+</ul>
+</section>
+<section id="caching">
+<h2>Caching<a class="headerlink" href="#caching" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;cache_mem</span></code> – In-memory function result caching</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;cache_disk</span></code> – Persistent disk-based caching</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;cache_disk_async</span></code> – Async disk caching</p></li>
+</ul>
+</section>
+<section id="utilities">
+<h2>Utilities<a class="headerlink" href="#utilities" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;deprecated(reason,</span> <span class="pre">forward_to)</span></code> – Mark functions as deprecated</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;not_implemented</span></code> – Mark as not yet implemented</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;timeout(seconds)</span></code> – Enforce execution time limits</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&#64;preserve_doc</span></code> – Preserve docstrings when wrapping</p></li>
+</ul>
+</section>
+<section id="auto-ordering">
+<h2>Auto-Ordering<a class="headerlink" href="#auto-ordering" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.decorators</span><span class="w"> </span><span class="kn">import</span> <span class="n">enable_auto_order</span>
+
+<span class="n">enable_auto_order</span><span class="p">()</span>
+<span class="c1"># Now decorators are applied in optimal order regardless of code order</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.decorators">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.decorators" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+++ b/src/scitex/_sphinx_html/source/api/dev.html
@@ -0,0 +1,1800 @@
+
+
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/dev.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="dev-module-stx-dev">
+<h1>Dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)<a class="headerlink" href="#dev-module-stx-dev" title="Link to this heading"></a></h1>
+<p>Development tools and ecosystem management for the SciTeX package family.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">stx.dev</span></code> delegates to the standalone
+<a class="reference external" href="https://github.com/ywatanabe1989/scitex-dev">scitex-dev</a> package.
+Install with: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-dev</span></code>.</p>
+</div>
+<section id="overview">
+<h2>Overview<a class="headerlink" href="#overview" title="Link to this heading"></a></h2>
+<p>The dev module provides utilities for maintaining the SciTeX ecosystem of
+packages, building documentation, managing versions, and creating
+MCP/CLI wrappers for scientific tools. It is primarily used by package
+maintainers and contributors rather than end users.</p>
+</section>
+<section id="ecosystem-management">
+<h2>Ecosystem Management<a class="headerlink" href="#ecosystem-management" title="Link to this heading"></a></h2>
+<p>The SciTeX ecosystem comprises 14+ packages. <code class="docutils literal notranslate"><span class="pre">stx.dev</span></code> provides a
+unified registry and coordination tools.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># List all ecosystem packages</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">list_versions</span><span class="p">()</span>
+
+<span class="c1"># Check version consistency across the ecosystem</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">check_versions</span><span class="p">()</span>
+
+<span class="c1"># Synchronize local clones</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">ecosystem_sync</span><span class="p">()</span>
+
+<span class="c1"># Commit across multiple packages</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">ecosystem_commit</span><span class="p">(</span><span class="s2">&quot;fix: update shared constants&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<table class="docutils align-default" id="id1">
+<caption><span class="caption-text">Ecosystem Packages</span><a class="headerlink" href="#id1" title="Link to this table"></a></caption>
+<colgroup>
+<col style="width: 30.0%" />
+<col style="width: 70.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Package</p></th>
+<th class="head"><p>Purpose</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">scitex</span></code></p></td>
+<td><p>Hub package (re-exports all modules)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">scitex-io</span></code></p></td>
+<td><p>File I/O for 30+ formats</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">scitex-stats</span></code></p></td>
+<td><p>Statistical testing with auto-reporting</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">scitex-linter</span></code></p></td>
+<td><p>AST-based convention checker</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">scitex-clew</span></code></p></td>
+<td><p>Claim-evidence-workflow pipeline</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">figrecipe</span></code></p></td>
+<td><p>Publication-quality plotting</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">scitex-dev</span></code></p></td>
+<td><p>Development and ecosystem tools</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">scitex-notification</span></code></p></td>
+<td><p>Multi-backend notifications</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">scitex-app</span></code></p></td>
+<td><p>Runtime SDK for SciTeX applications</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="llm-friendly-types">
+<h2>LLM-friendly Types<a class="headerlink" href="#llm-friendly-types" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">stx.dev</span></code> provides structured return types designed for consumption
+by both humans and AI agents:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.dev</span><span class="w"> </span><span class="kn">import</span> <span class="n">Result</span><span class="p">,</span> <span class="n">ErrorCode</span>
+
+<span class="c1"># Wrap function results for consistent handling</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">Result</span><span class="p">(</span><span class="n">ok</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;accuracy&quot;</span><span class="p">:</span> <span class="mf">0.95</span><span class="p">})</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">Result</span><span class="p">(</span><span class="n">ok</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">error</span><span class="o">=</span><span class="n">ErrorCode</span><span class="o">.</span><span class="n">NOT_FOUND</span><span class="p">,</span> <span class="n">message</span><span class="o">=</span><span class="s2">&quot;File missing&quot;</span><span class="p">)</span>
+
+<span class="c1"># Decorator to add return_as= parameter</span>
+<span class="nd">@stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">supports_return_as</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">analyze</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+    <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;mean&quot;</span><span class="p">:</span> <span class="n">data</span><span class="o">.</span><span class="n">mean</span><span class="p">()}</span>
+
+<span class="n">analyze</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;json&quot;</span><span class="p">)</span>    <span class="c1"># JSON string</span>
+<span class="n">analyze</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;dict&quot;</span><span class="p">)</span>    <span class="c1"># Python dict</span>
+</pre></div>
+</div>
+</section>
+<section id="mcp-and-cli-wrappers">
+<h2>MCP and CLI Wrappers<a class="headerlink" href="#mcp-and-cli-wrappers" title="Link to this heading"></a></h2>
+<p>Convert Python functions into MCP tools or CLI commands:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.dev</span><span class="w"> </span><span class="kn">import</span> <span class="n">wrap_as_mcp</span><span class="p">,</span> <span class="n">wrap_as_cli</span>
+
+<span class="k">def</span><span class="w"> </span><span class="nf">my_tool</span><span class="p">(</span><span class="n">path</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">threshold</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Analyze a data file.&quot;&quot;&quot;</span>
+    <span class="o">...</span>
+
+<span class="c1"># Register as MCP tool (for AI agent access)</span>
+<span class="n">mcp_tool</span> <span class="o">=</span> <span class="n">wrap_as_mcp</span><span class="p">(</span><span class="n">my_tool</span><span class="p">)</span>
+
+<span class="c1"># Register as CLI command (for terminal access)</span>
+<span class="n">cli_cmd</span> <span class="o">=</span> <span class="n">wrap_as_cli</span><span class="p">(</span><span class="n">my_tool</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="documentation">
+<h2>Documentation<a class="headerlink" href="#documentation" title="Link to this heading"></a></h2>
+<p>Build and search unified documentation across the ecosystem:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Build Sphinx docs for a package</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">build_docs</span><span class="p">(</span><span class="s2">&quot;scitex-io&quot;</span><span class="p">)</span>
+
+<span class="c1"># Get docstring for any public function</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">get_docs</span><span class="p">(</span><span class="s2">&quot;stx.io.save&quot;</span><span class="p">)</span>
+
+<span class="c1"># Full-text search across all packages</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s2">&quot;load_configs&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="hot-reload">
+<h2>Hot Reload<a class="headerlink" href="#hot-reload" title="Link to this heading"></a></h2>
+<p>Reload modules during interactive development:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">reload</span><span class="p">(</span><span class="s2">&quot;scitex.io&quot;</span><span class="p">)</span>    <span class="c1"># Re-import scitex.io from disk</span>
+</pre></div>
+</div>
+</section>
+<section id="hpc-testing">
+<h2>HPC Testing<a class="headerlink" href="#hpc-testing" title="Link to this heading"></a></h2>
+<p>Submit test suites to HPC clusters and poll results:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>dev<span class="w"> </span>test-hpc<span class="w"> </span>--package<span class="w"> </span>scitex-io
+scitex<span class="w"> </span>dev<span class="w"> </span>test-hpc-poll<span class="w"> </span>--job-id<span class="w"> </span><span class="m">12345</span>
+</pre></div>
+</div>
+</section>
+<section id="bulk-rename">
+<h2>Bulk Rename<a class="headerlink" href="#bulk-rename" title="Link to this heading"></a></h2>
+<p>Rename symbols across an entire codebase safely:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">dev</span><span class="o">.</span><span class="n">bulk_rename</span><span class="p">(</span>
+    <span class="n">root</span><span class="o">=</span><span class="s2">&quot;./src&quot;</span><span class="p">,</span>
+    <span class="n">old</span><span class="o">=</span><span class="s2">&quot;old_function_name&quot;</span><span class="p">,</span>
+    <span class="n">new</span><span class="o">=</span><span class="s2">&quot;new_function_name&quot;</span><span class="p">,</span>
+    <span class="n">dry_run</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>    <span class="c1"># Preview changes first</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.dev">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.dev" title="Link to this heading"></a></h2>
+<p>scitex-dev: Shared developer utilities for the SciTeX ecosystem.</p>
+<p>Zero-dependency package providing:
+- Docs aggregation and serving across all scitex packages
+- Unified search across APIs, CLI, MCP tools, and documentation
+- Version management and ecosystem registry
+- Bulk rename with cross-reference updates
+- LLM-friendly types (Result, ErrorCode, &#64;supports_return_as)</p>
+<p>Public API (20 functions):</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># Docs</span>
+<span class="n">get_docs</span><span class="p">,</span> <span class="n">build_docs</span><span class="p">,</span> <span class="n">search_docs</span>
+
+<span class="c1"># Search</span>
+<span class="n">search</span>
+
+<span class="c1"># Versions</span>
+<span class="n">list_versions</span><span class="p">,</span> <span class="n">check_versions</span><span class="p">,</span> <span class="n">get_mismatches</span><span class="p">,</span> <span class="n">fix_mismatches</span>
+
+<span class="c1"># LLM-friendly types</span>
+<span class="n">Result</span><span class="p">,</span> <span class="n">ErrorCode</span><span class="p">,</span> <span class="n">supports_return_as</span><span class="p">,</span> <span class="n">SideEffect</span><span class="p">,</span>
+<span class="n">classify_exception</span><span class="p">,</span> <span class="n">handle_result</span><span class="p">,</span> <span class="n">run_as_cli</span><span class="p">,</span> <span class="n">run_as_mcp</span><span class="p">,</span>
+<span class="n">result_to_mcp</span><span class="p">,</span> <span class="n">wrap_as_mcp</span>
+</pre></div>
+</div>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.get_docs">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">get_docs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">package</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">page</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">_discover_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">_root_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">_sphinx_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_docs/docs.html#get_docs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.get_docs" title="Link to this definition"></a></dt>
+<dd><p>Get documentation for one, several, or all installed SciTeX packages.</p>
+<dl class="simple">
+<dt>Resolution chain per package:</dt><dd><ol class="arabic simple">
+<li><p>Pre-built _sphinx_html/ in installed package → fastest (production)</p></li>
+<li><p>Sphinx _build/ available → use existing build</p></li>
+<li><p>Neither → introspect from docstrings + signatures (always works)</p></li>
+</ol>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>package</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Single package name (returns unwrapped result).</p></li>
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – List of package names (returns dict keyed by name).</p></li>
+<li><p><strong>format</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Output format — None for manifest, “json” for structured,
+“html” for path to HTML directory.</p></li>
+<li><p><strong>page</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific page name (only with format=”html” or “json”).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>the doc result directly (unwrapped).
+- If packages=: dict mapping package name → doc result.
+- If neither: dict of all discovered packages → doc result.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ValueError" title="(in Python v3.14)"><strong>ValueError</strong></a> – If both package= and packages= are given.</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#LookupError" title="(in Python v3.14)"><strong>LookupError</strong></a> – If a requested package is not found.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.build_docs">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">build_docs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">package</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">formats</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">_discover_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">_sphinx_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_docs/docs.html#build_docs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.build_docs" title="Link to this definition"></a></dt>
+<dd><p>Build docs from Sphinx source for one or all packages.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>package</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Single package name. None = build all discovered.</p></li>
+<li><p><strong>output_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Override output directory. Default: in-place (_build/).</p></li>
+<li><p><strong>formats</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – List of builders (“html”, “json”). Default: [“html”].</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Dict mapping package name → build result (path or error).</p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#LookupError" title="(in Python v3.14)"><strong>LookupError</strong></a> – If package not found.</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#RuntimeError" title="(in Python v3.14)"><strong>RuntimeError</strong></a> – If Sphinx is not installed.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.search_docs">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">search_docs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">query</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">package</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_results</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">_discover_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">_get_one_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_docs/docs.html#search_docs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.search_docs" title="Link to this definition"></a></dt>
+<dd><p>Search documentation across one, several, or all SciTeX packages.</p>
+<p>Simple keyword search over page titles and introspected content.
+Stdlib only — no external search dependencies.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>query</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Search query string (case-insensitive keyword matching).</p></li>
+<li><p><strong>package</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Search within a single package.</p></li>
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – Search within specific packages.</p></li>
+<li><p><strong>max_results</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum number of results to return.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>package, name, title, score, match_type.
+Sorted by relevance score (descending).</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.search">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">search</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">query</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scope</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'all'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">package</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_results</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fuzzy</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_docs/search.html#search"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.search" title="Link to this definition"></a></dt>
+<dd><p>Search across the SciTeX ecosystem.</p>
+<dl class="simple">
+<dt>Query syntax:</dt><dd><p>“save figure”     → match any term
+‘“exact phrase”’  → match exact phrase
+“+required term”  → term must appear
+“-excluded”       → results with this term are removed</p>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>query</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Search query (supports +required, -excluded, “phrases”).</p></li>
+<li><p><strong>scope</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Literal" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Literal</span></code></a>[<code class="docutils literal notranslate"><span class="pre">'all'</span></code>, <code class="docutils literal notranslate"><span class="pre">'api'</span></code>, <code class="docutils literal notranslate"><span class="pre">'cli'</span></code>, <code class="docutils literal notranslate"><span class="pre">'mcp'</span></code>, <code class="docutils literal notranslate"><span class="pre">'docs'</span></code>]</span>) – What to search — “all”, “api”, “cli”, “mcp”, or “docs”.</p></li>
+<li><p><strong>package</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Limit to a single package.</p></li>
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – Limit to specific packages.</p></li>
+<li><p><strong>max_results</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum results to return.</p></li>
+<li><p><strong>fuzzy</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Enable fuzzy matching via difflib (default True).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>package, name, title, score, scope, match_type.
+Sorted by relevance (score descending).</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.list_versions">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">list_versions</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_release/versions.html#list_versions"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.list_versions" title="Link to this definition"></a></dt>
+<dd><p>List versions for all ecosystem packages.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – List of package names to check. If None, checks all ecosystem packages.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Version information for each package.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.check_versions">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">check_versions</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_release/versions.html#check_versions"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.check_versions" title="Link to this definition"></a></dt>
+<dd><p>Check version consistency and return detailed status.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – List of package names to check. If None, checks all ecosystem packages.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Detailed version check results with overall summary.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.get_mismatches">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">get_mismatches</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_release/versions.html#get_mismatches"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.get_mismatches" title="Link to this definition"></a></dt>
+<dd><p>Return packages with non-ok status and their issues.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names to check. None = all ecosystem packages.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{package_name: {status, issues, local, git, remote}} for non-ok packages.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.fix_mismatches">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">fix_mismatches</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">hosts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">local</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">remote</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">confirm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_release/fix.html#fix_mismatches"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.fix_mismatches" title="Link to this definition"></a></dt>
+<dd><p>Detect version mismatches and fix them.</p>
+<p>Combines detect + fix_local + fix_remote. Kept for backward compatibility.
+Prefer using the individual functions for clarity.</p>
+<p>Safety: defaults to preview only. Pass confirm=True to execute.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.get_ecosystem_versions">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">get_ecosystem_versions</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_release/versions.html#get_ecosystem_versions"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.get_ecosystem_versions" title="Link to this definition"></a></dt>
+<dd><p>Return a flat <cite>{pkg_name: installed_version}</cite> dict for the ecosystem.</p>
+<p>Thin wrapper over <cite>list_versions</cite> for consumers that just need the
+installed-version string (Django health endpoints, Docker HEALTHCHECK
+scripts, dashboards). Skips all the git / PyPI / pyproject cross-
+check detail.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names to check. None = all ecosystem packages.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><code class="docutils literal notranslate"><span class="pre">{&quot;scitex&quot;:</span> <span class="pre">&quot;2.27.3&quot;,</span> <span class="pre">&quot;figrecipe&quot;:</span> <span class="pre">&quot;0.28.1&quot;,</span> <span class="pre">&quot;scitex-io&quot;:</span> <span class="pre">None}</span></code>.
+None means the package is not installed.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_dev</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_ecosystem_versions</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">vers</span> <span class="o">=</span> <span class="n">get_ecosystem_versions</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">vers</span><span class="p">[</span><span class="s2">&quot;scitex&quot;</span><span class="p">]</span>
+<span class="go">&#39;2.27.3&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.dev.Result">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">Result</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">success</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">error</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">error_code</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">side_effects</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hints_on_success</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hints_on_warning</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hints_on_error</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">idempotent</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/types.html#Result"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.Result" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Generic" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Generic</span></code></a>[<code class="xref py py-obj docutils literal notranslate"><span class="pre">T</span></code>]</p>
+<p>Structured result wrapping function output with metadata.</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.success">
+<span class="sig-name descname"><span class="pre">success</span></span><a class="headerlink" href="#scitex.dev.Result.success" title="Link to this definition"></a></dt>
+<dd><p>Whether the operation succeeded.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)">bool</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.data">
+<span class="sig-name descname"><span class="pre">data</span></span><a class="headerlink" href="#scitex.dev.Result.data" title="Link to this definition"></a></dt>
+<dd><p>The return value on success; None on failure.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p>T | None</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.error">
+<span class="sig-name descname"><span class="pre">error</span></span><a class="headerlink" href="#scitex.dev.Result.error" title="Link to this definition"></a></dt>
+<dd><p>Human-readable error message on failure.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a> | None</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.error_code">
+<span class="sig-name descname"><span class="pre">error_code</span></span><a class="headerlink" href="#scitex.dev.Result.error_code" title="Link to this definition"></a></dt>
+<dd><p>Machine-readable error code (e.g. “E001”).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a> | None</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.context">
+<span class="sig-name descname"><span class="pre">context</span></span><a class="headerlink" href="#scitex.dev.Result.context" title="Link to this definition"></a></dt>
+<dd><p>Additional context (file paths, parameters, etc.).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)">dict</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.side_effects">
+<span class="sig-name descname"><span class="pre">side_effects</span></span><a class="headerlink" href="#scitex.dev.Result.side_effects" title="Link to this definition"></a></dt>
+<dd><p>Description of mutations performed.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.hints_on_success">
+<span class="sig-name descname"><span class="pre">hints_on_success</span></span><a class="headerlink" href="#scitex.dev.Result.hints_on_success" title="Link to this definition"></a></dt>
+<dd><p>Related tools the consumer might want (light, “see also” style).
+Reserved for future use — currently empty.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.hints_on_warning">
+<span class="sig-name descname"><span class="pre">hints_on_warning</span></span><a class="headerlink" href="#scitex.dev.Result.hints_on_warning" title="Link to this definition"></a></dt>
+<dd><p>Hints for partial success, deprecation, or approaching limits.
+Reserved for future use — currently empty.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.hints_on_error">
+<span class="sig-name descname"><span class="pre">hints_on_error</span></span><a class="headerlink" href="#scitex.dev.Result.hints_on_error" title="Link to this definition"></a></dt>
+<dd><p>Recovery guidance for expected failures (FAQ-style).
+Accepts None, “”, a single string, or a list.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.idempotent">
+<span class="sig-name descname"><span class="pre">idempotent</span></span><a class="headerlink" href="#scitex.dev.Result.idempotent" title="Link to this definition"></a></dt>
+<dd><p>Whether the operation is safe to retry.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)">bool</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.Result.version">
+<span class="sig-name descname"><span class="pre">version</span></span><a class="headerlink" href="#scitex.dev.Result.version" title="Link to this definition"></a></dt>
+<dd><p>API version for response schema evolution.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a> | None</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.dev.Result.__post_init__">
+<span class="sig-name descname"><span class="pre">__post_init__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/types.html#Result.__post_init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.Result.__post_init__" title="Link to this definition"></a></dt>
+<dd><p>Normalize hint fields (accept None, “”, single string, or list).</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.dev.Result.to_dict">
+<span class="sig-name descname"><span class="pre">to_dict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/types.html#Result.to_dict"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.Result.to_dict" title="Link to this definition"></a></dt>
+<dd><p>Convert to a plain dictionary, stripping None values.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.dev.Result.to_json">
+<span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">indent</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/types.html#Result.to_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.Result.to_json" title="Link to this definition"></a></dt>
+<dd><p>Serialize to a JSON string.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.dev.Result.exit_code">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">exit_code</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><span class="pre">int</span></a></span><a class="headerlink" href="#scitex.dev.Result.exit_code" title="Link to this definition"></a></dt>
+<dd><p>Map error_code to a CLI exit code.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.dev.Result.json_schema">
+<span class="property"><span class="k"><span class="pre">classmethod</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">json_schema</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/types.html#Result.json_schema"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.Result.json_schema" title="Link to this definition"></a></dt>
+<dd><p>Return JSON Schema describing the Result envelope.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.dev.ErrorCode">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">ErrorCode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">values</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/errors.html#ErrorCode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.ErrorCode" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/enum.html#enum.Enum" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Enum</span></code></a></p>
+<p>Machine-readable error codes for structured error responses.</p>
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.dev.ErrorCode.exit_code">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">exit_code</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><span class="pre">int</span></a></span><a class="headerlink" href="#scitex.dev.ErrorCode.exit_code" title="Link to this definition"></a></dt>
+<dd><p>POSIX-style exit code for this error category.</p>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.dev.ScitexError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">ScitexError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">code</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">ErrorCode.INTERNAL</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">remediation</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/errors.html#ScitexError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.ScitexError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/exceptions.html#Exception" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Exception</span></code></a></p>
+<p>Canonical SciTeX exception for structured failures.</p>
+<p>Use when the failure crosses an MCP / CLI / HTTP boundary and the caller
+(often an LLM agent) needs a machine-readable category plus a human
+remediation hint. For plain Python errors raised inside a script,
+prefer the standard library exceptions (<code class="docutils literal notranslate"><span class="pre">ValueError</span></code>, <code class="docutils literal notranslate"><span class="pre">FileNotFoundError</span></code>,
+etc.) — see <code class="docutils literal notranslate"><span class="pre">general/03_interface/01_python-api/09_error-handling.md</span></code>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>message</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Human-readable description of the failure.</p></li>
+<li><p><strong>code</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.dev.ErrorCode" title="scitex_dev._core.errors.ErrorCode"><code class="xref py py-class docutils literal notranslate"><span class="pre">ErrorCode</span></code></a></span>) – Machine-readable category. Defaults to <code class="docutils literal notranslate"><span class="pre">ErrorCode.INTERNAL</span></code>.</p></li>
+<li><p><strong>remediation</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – How to fix it (e.g. <code class="docutils literal notranslate"><span class="pre">&quot;pip</span> <span class="pre">install</span> <span class="pre">scitex-io[h5]&quot;</span></code>).</p></li>
+</ul>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="k">raise</span> <span class="n">ScitexError</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="s2">&quot;h5py not installed&quot;</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">code</span><span class="o">=</span><span class="n">ErrorCode</span><span class="o">.</span><span class="n">DEPENDENCY</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">remediation</span><span class="o">=</span><span class="s2">&quot;pip install scitex-io[h5]&quot;</span><span class="p">,</span>
+<span class="gp">... </span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.dev.ScitexError.to_dict">
+<span class="sig-name descname"><span class="pre">to_dict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/errors.html#ScitexError.to_dict"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.ScitexError.to_dict" title="Link to this definition"></a></dt>
+<dd><p>Serialize to the structured shape consumed by MCP tools and <cite>–json</cite>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.classify_exception">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">classify_exception</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">exc</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/errors.html#classify_exception"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.classify_exception" title="Link to this definition"></a></dt>
+<dd><p>Classify an exception into an ErrorCode.</p>
+<p>Checks for a <code class="docutils literal notranslate"><span class="pre">.error_code</span></code> attribute first (SciTeXError convention),
+then falls back to built-in exception type mapping.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.dev.ErrorCode" title="scitex_dev._core.errors.ErrorCode"><code class="xref py py-class docutils literal notranslate"><span class="pre">ErrorCode</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.try_import_optional">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">try_import_optional</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">module_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">attr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">extra</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pkg</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">package</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/imports.html#try_import_optional"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.try_import_optional" title="Link to this definition"></a></dt>
+<dd><p>Import <code class="docutils literal notranslate"><span class="pre">module_path</span></code>; return <code class="docutils literal notranslate"><span class="pre">None</span></code> on <code class="docutils literal notranslate"><span class="pre">ImportError</span></code>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>module_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Module to import. Leading <code class="docutils literal notranslate"><span class="pre">.</span></code> triggers relative resolution against
+<code class="docutils literal notranslate"><span class="pre">package</span></code> (mirrors <a class="reference external" href="https://docs.python.org/3/library/importlib.html#importlib.import_module" title="(in Python v3.14)"><code class="xref py py-func docutils literal notranslate"><span class="pre">importlib.import_module()</span></code></a>).</p></li>
+<li><p><strong>attr</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – If given, return <code class="docutils literal notranslate"><span class="pre">getattr(module,</span> <span class="pre">attr)</span></code> instead of the module.
+A missing attribute is treated identically to a failed import.</p></li>
+<li><p><strong>extra</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Name of the pip extra that pulls this dependency (used for the
+install hint surfaced via <a class="reference internal" href="#scitex.dev.last_install_hint" title="scitex.dev.last_install_hint"><code class="xref py py-func docutils literal notranslate"><span class="pre">last_install_hint()</span></code></a>).</p></li>
+<li><p><strong>pkg</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Distribution name owning the extra (e.g. <code class="docutils literal notranslate"><span class="pre">&quot;scitex-io&quot;</span></code>).</p></li>
+<li><p><strong>package</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Anchor for relative imports.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The imported module/attribute, or <code class="docutils literal notranslate"><span class="pre">None</span></code> on failure.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.last_install_hint">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">last_install_hint</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/imports.html#last_install_hint"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.last_install_hint" title="Link to this definition"></a></dt>
+<dd><p>Return the most recently recorded install hint for <code class="docutils literal notranslate"><span class="pre">name</span></code> (or <code class="docutils literal notranslate"><span class="pre">None</span></code>).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.dev.InstallHint" title="scitex_dev._core.imports.InstallHint"><code class="xref py py-class docutils literal notranslate"><span class="pre">InstallHint</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.dev.InstallHint">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">InstallHint</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">module</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extra</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pkg</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/imports.html#InstallHint"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.InstallHint" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Metadata to help a caller surface a useful install message.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.supports_return_as">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">supports_return_as</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fn</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/decorators.html#supports_return_as"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.supports_return_as" title="Link to this definition"></a></dt>
+<dd><p>Add <code class="docutils literal notranslate"><span class="pre">return_as=&quot;result&quot;</span></code> support to a function.</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">return_as=None</span></code> (default): data returned, exceptions raised.</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">return_as=&quot;result&quot;</span></code>: wrapped in <code class="docutils literal notranslate"><span class="pre">Result</span></code>.</p></li>
+<li><p>Any other value: passed through to the original function.</p></li>
+</ul>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="nd">@supports_return_as</span>
+<span class="gp">... </span><span class="k">def</span><span class="w"> </span><span class="nf">add</span><span class="p">(</span><span class="n">a</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">b</span><span class="p">:</span> <span class="nb">int</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="k">return</span> <span class="n">a</span> <span class="o">+</span> <span class="n">b</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">add</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
+<span class="go">3</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span> <span class="o">=</span> <span class="n">add</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;result&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span><span class="o">.</span><span class="n">success</span>
+<span class="go">True</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span><span class="o">.</span><span class="n">data</span>
+<span class="go">3</span>
+</pre></div>
+</div>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.dev.SideEffect">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">SideEffect</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">undoable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_core/side_effects.html#SideEffect"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.SideEffect" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>A declared side effect of a function.</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.SideEffect.type">
+<span class="sig-name descname"><span class="pre">type</span></span><a class="headerlink" href="#scitex.dev.SideEffect.type" title="Link to this definition"></a></dt>
+<dd><p>Category (file_create, file_modify, file_delete, network,
+state_change, cache_write).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.SideEffect.target">
+<span class="sig-name descname"><span class="pre">target</span></span><a class="headerlink" href="#scitex.dev.SideEffect.target" title="Link to this definition"></a></dt>
+<dd><p>What is affected (file path, URL, description).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.dev.SideEffect.undoable">
+<span class="sig-name descname"><span class="pre">undoable</span></span><a class="headerlink" href="#scitex.dev.SideEffect.undoable" title="Link to this definition"></a></dt>
+<dd><p>Whether the effect can be reversed.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)">bool</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.handle_result">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">handle_result</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">result</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">as_json</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_cli/_utils.html#handle_result"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.handle_result" title="Link to this definition"></a></dt>
+<dd><p>Format and print a Result, return the exit code.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>result</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.dev.Result" title="scitex_dev._core.types.Result"><code class="xref py py-class docutils literal notranslate"><span class="pre">Result</span></code></a></span>) – The structured result to display.</p></li>
+<li><p><strong>as_json</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, output full JSON. If False, human-friendly text.</p></li>
+<li><p><strong>file</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Output stream. Defaults to stdout/stderr based on success.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Exit code suitable for <code class="docutils literal notranslate"><span class="pre">sys.exit()</span></code>.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.run_as_cli">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">run_as_cli</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fn</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">as_json</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_cli/_utils.html#run_as_cli"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.run_as_cli" title="Link to this definition"></a></dt>
+<dd><p>Call a <code class="docutils literal notranslate"><span class="pre">&#64;supports_return_as</span></code> function and exit with proper code.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>fn</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span>) – A function decorated with <code class="docutils literal notranslate"><span class="pre">&#64;supports_return_as</span></code>.</p></li>
+<li><p><strong>as_json</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, output full JSON.</p></li>
+<li><p><strong>**kwargs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Arguments to pass to <code class="docutils literal notranslate"><span class="pre">fn</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.wrap_as_cli">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">wrap_as_cli</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fn</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">as_json</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_cli/_utils.html#wrap_as_cli"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.wrap_as_cli" title="Link to this definition"></a></dt>
+<dd><p>Call any function and display its result via CLI.</p>
+<p>Like <code class="docutils literal notranslate"><span class="pre">wrap_as_mcp</span></code> but for terminal output. Wraps any plain
+function in Result, formats based on <code class="docutils literal notranslate"><span class="pre">as_json</span></code>, and exits
+with proper exit code.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>fn</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span>) – Any callable returning data or raising exceptions.</p></li>
+<li><p><strong>as_json</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, output full JSON Result. If False, human-friendly text.</p></li>
+<li><p><strong>**kwargs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Arguments to pass to <code class="docutils literal notranslate"><span class="pre">fn</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.run_as_mcp">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">run_as_mcp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fn</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_ecosystem/_mcp/_utils.html#run_as_mcp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.run_as_mcp" title="Link to this definition"></a></dt>
+<dd><p>Call a <code class="docutils literal notranslate"><span class="pre">&#64;supports_return_as</span></code> function and return MCP-ready JSON.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>fn</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span>) – A function decorated with <code class="docutils literal notranslate"><span class="pre">&#64;supports_return_as</span></code>.</p></li>
+<li><p><strong>**kwargs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Arguments to pass to <code class="docutils literal notranslate"><span class="pre">fn</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>JSON string with the full Result structure.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.wrap_as_mcp">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">wrap_as_mcp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fn</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">side_effects</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hints_on_error</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">idempotent</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_ecosystem/_mcp/_utils.html#wrap_as_mcp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.wrap_as_mcp" title="Link to this definition"></a></dt>
+<dd><p>Call any function and wrap its return in Result JSON.</p>
+<p>Unlike <code class="docutils literal notranslate"><span class="pre">run_as_mcp</span></code> (which requires <code class="docutils literal notranslate"><span class="pre">&#64;supports_return_as</span></code>),
+this wraps any plain function. Use this to retrofit existing
+handlers without modifying the underlying function.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>fn</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span>) – Any callable returning data or raising exceptions.</p></li>
+<li><p><strong>side_effects</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Declared side effects (e.g. <code class="docutils literal notranslate"><span class="pre">[&quot;file_create:</span> <span class="pre">/tmp/out.csv&quot;]</span></code>).</p></li>
+<li><p><strong>hints_on_error</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Recovery guidance for expected failures (FAQ-style).</p></li>
+<li><p><strong>idempotent</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether the operation is safe to retry.</p></li>
+<li><p><strong>**kwargs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Arguments to pass to <code class="docutils literal notranslate"><span class="pre">fn</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>JSON string with Result structure.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.async_wrap_as_mcp">
+<span class="property"><span class="k"><span class="pre">async</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">async_wrap_as_mcp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">coro_fn</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">side_effects</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hints_on_error</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">idempotent</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_ecosystem/_mcp/_utils.html#async_wrap_as_mcp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.async_wrap_as_mcp" title="Link to this definition"></a></dt>
+<dd><p>Async version of <code class="docutils literal notranslate"><span class="pre">wrap_as_mcp</span></code> for async handlers.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>coro_fn</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span>) – Any async callable (coroutine function) returning data
+or raising exceptions.</p></li>
+<li><p><strong>side_effects</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Declared side effects.</p></li>
+<li><p><strong>hints_on_error</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Recovery guidance for expected failures (FAQ-style).</p></li>
+<li><p><strong>idempotent</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether the operation is safe to retry.</p></li>
+<li><p><strong>**kwargs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Arguments to pass to <code class="docutils literal notranslate"><span class="pre">coro_fn</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>JSON string with Result structure.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.result_to_mcp">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">result_to_mcp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">result</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_ecosystem/_mcp/_utils.html#result_to_mcp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.result_to_mcp" title="Link to this definition"></a></dt>
+<dd><p>Convert an existing Result to MCP-ready JSON.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.json_option">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">json_option</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fn</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_cli/_utils.html#json_option"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.json_option" title="Link to this definition"></a></dt>
+<dd><p>Click decorator: adds <code class="docutils literal notranslate"><span class="pre">--json</span></code> flag as <code class="docutils literal notranslate"><span class="pre">as_json</span></code> parameter.</p>
+<p>Uses lazy <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">click</span></code> so scitex-dev stays stdlib-only.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.dry_run_option">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">dry_run_option</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fn</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_cli/_utils.html#dry_run_option"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.dry_run_option" title="Link to this definition"></a></dt>
+<dd><p>Click decorator: adds <code class="docutils literal notranslate"><span class="pre">--dry-run</span></code> flag.</p>
+<p>Uses lazy <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">click</span></code> so scitex-dev stays stdlib-only.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.add_json_argument">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">add_json_argument</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parser</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_cli/_utils.html#add_json_argument"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.add_json_argument" title="Link to this definition"></a></dt>
+<dd><p>Add <code class="docutils literal notranslate"><span class="pre">--json</span></code> flag to an argparse parser.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.add_dry_run_argument">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">add_dry_run_argument</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parser</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_cli/_utils.html#add_dry_run_argument"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.add_dry_run_argument" title="Link to this definition"></a></dt>
+<dd><p>Add <code class="docutils literal notranslate"><span class="pre">--dry-run</span></code> flag to an argparse parser.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.sync_all">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">sync_all</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">hosts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stash</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">install</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">safe</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">confirm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">sync_host_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">enabled_hosts_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_sync/_local.html#sync_all"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.sync_all" title="Link to this definition"></a></dt>
+<dd><p>Sync packages across all enabled hosts.</p>
+<p>Safety: defaults to preview only. Pass confirm=True to execute.
+Parallel: hosts are synced concurrently by default.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>hosts</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Host names to sync. None = all enabled hosts.</p></li>
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names. None = host-specific defaults.</p></li>
+<li><p><strong>stash</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Git stash before pull.</p></li>
+<li><p><strong>install</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Pip install after pull.</p></li>
+<li><p><strong>safe</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True (default), skip packages whose remote working copy is
+ahead of / diverged from upstream (never clobber unpushed work).</p></li>
+<li><p><strong>confirm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If False (default), preview only (dry run).
+If True, execute the sync operation.</p></li>
+<li><p><strong>config</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DevConfig</span></code> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Configuration.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{host_name: {package: result}}.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.sync_host">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">sync_host</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">host</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stash</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">install</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">safe</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">confirm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">host_packages_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_sync/_local.html#sync_host"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.sync_host" title="Link to this definition"></a></dt>
+<dd><p>Sync packages to a remote host via SSH.</p>
+<p>Safety: defaults to preview only. Pass confirm=True to execute.</p>
+<p>Steps per package: ahead-check (if safe), git stash, git pull,
+pip install -e ., git stash pop.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>host</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">HostConfig</span></code></span>) – Target host configuration.</p></li>
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names to sync. None = use host’s configured packages.</p></li>
+<li><p><strong>stash</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Git stash before pull (default True).</p></li>
+<li><p><strong>install</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Pip install after pull (default True).</p></li>
+<li><p><strong>safe</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True (default), pre-check each remote working copy and skip
+packages whose HEAD is ahead of / diverged from upstream so we
+never clobber unpushed commits.</p></li>
+<li><p><strong>confirm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If False (default), preview only (dry run).
+If True, execute the sync operation.</p></li>
+<li><p><strong>config</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DevConfig</span></code> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Configuration. Loaded from default if None.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Per-package results: {package: {status, commands|output, error}}.
+<code class="docutils literal notranslate"><span class="pre">status</span></code> includes <code class="docutils literal notranslate"><span class="pre">ok</span></code>, <code class="docutils literal notranslate"><span class="pre">skipped_ahead</span></code>, <code class="docutils literal notranslate"><span class="pre">skipped_diverged</span></code>,
+<code class="docutils literal notranslate"><span class="pre">missing</span></code>, <code class="docutils literal notranslate"><span class="pre">error</span></code>, <code class="docutils literal notranslate"><span class="pre">timeout</span></code>, or <code class="docutils literal notranslate"><span class="pre">dry_run</span></code>.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.sync_local">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">sync_local</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">confirm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">jobs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">on_progress</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_sync/_local.html#sync_local"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.sync_local" title="Link to this definition"></a></dt>
+<dd><p>Install all local editable packages.</p>
+<p>Safety: defaults to preview only. Pass confirm=True to execute.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names. None = all configured packages.</p></li>
+<li><p><strong>confirm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If False (default), preview only.
+If True, execute pip install -e.</p></li>
+<li><p><strong>config</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DevConfig</span></code> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Configuration.</p></li>
+<li><p><strong>jobs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Parallel installs. 1 = serial (default). 0 or negative = all CPUs.</p></li>
+<li><p><strong>on_progress</strong> (<em>callable</em><em> | </em><em>None</em>) – Optional callback <code class="docutils literal notranslate"><span class="pre">f(idx,</span> <span class="pre">total,</span> <span class="pre">name,</span> <span class="pre">status,</span> <span class="pre">elapsed)</span></code> invoked
+as each package finishes.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{package: {status, output|commands}}.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.sync_tags">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">sync_tags</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">confirm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_sync/_tags.html#sync_tags"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.sync_tags" title="Link to this definition"></a></dt>
+<dd><p>Push local tags for all packages to origin.</p>
+<p>Safety: defaults to preview only. Pass confirm=True to execute.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names. None = all configured packages.</p></li>
+<li><p><strong>confirm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If False (default), preview only.
+If True, execute git push –tags.</p></li>
+<li><p><strong>config</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DevConfig</span></code> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Configuration.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{package: {status, tag, output|commands}}.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.remote_diff">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">remote_diff</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">host</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_sync/_remote.html#remote_diff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.remote_diff" title="Link to this definition"></a></dt>
+<dd><p>Show git diff on remote host(s). Read-only operation.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>host</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Host name. None = first enabled host.</p></li>
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names. None = host-configured defaults.</p></li>
+<li><p><strong>config</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DevConfig</span></code> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Configuration.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{host_name: {package: {status, files, diff_stat, diff}}}.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.remote_commit">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">remote_commit</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">host</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">message</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">push</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">confirm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_sync/_remote.html#remote_commit"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.remote_commit" title="Link to this definition"></a></dt>
+<dd><p>Commit dirty changes on a remote host and optionally push to origin.</p>
+<p>Safety: defaults to preview only. Pass confirm=True to execute.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>host</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Host name (required).</p></li>
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names. None = host-configured defaults.</p></li>
+<li><p><strong>message</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Commit message. Auto-generated if not provided.</p></li>
+<li><p><strong>push</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Push to origin after commit (default True).</p></li>
+<li><p><strong>confirm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If False (default), preview only (dry run).</p></li>
+<li><p><strong>config</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DevConfig</span></code> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Configuration.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{package: {status, commands|output}}.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.dev.pull_local">
+<span class="sig-prename descclassname"><span class="pre">scitex.dev.</span></span><span class="sig-name descname"><span class="pre">pull_local</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">packages</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">confirm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stash</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_dev/_sync/_remote.html#pull_local"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.dev.pull_local" title="Link to this definition"></a></dt>
+<dd><p>Pull latest from origin to local repos.</p>
+<p>Safety: defaults to preview only. Pass confirm=True to execute.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>packages</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Package names. None = all configured packages.</p></li>
+<li><p><strong>confirm</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If False (default), preview only.</p></li>
+<li><p><strong>stash</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True (default), stash local changes before pull and pop after.
+If False and repo is dirty, pull proceeds as-is (may fail).</p></li>
+<li><p><strong>config</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">DevConfig</span></code> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Configuration.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>{package: {status, output|commands, stashed}}.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
+      </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/diagram.html b/src/scitex/_sphinx_html/source/api/diagram.html
new file mode 100644
index 000000000..2de08e10e
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/diagram.html
@@ -0,0 +1,768 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Diagram Module (stx.diagram) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/diagram.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="diagram-module-stx-diagram">
+<h1>Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)<a class="headerlink" href="#diagram-module-stx-diagram" title="Link to this heading"></a></h1>
+<p>Paper-optimized diagram generation with Mermaid and Graphviz backends.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.diagram</span><span class="w"> </span><span class="kn">import</span> <span class="n">Diagram</span>
+
+<span class="c1"># Create from Python</span>
+<span class="n">d</span> <span class="o">=</span> <span class="n">Diagram</span><span class="p">(</span><span class="nb">type</span><span class="o">=</span><span class="s2">&quot;workflow&quot;</span><span class="p">,</span> <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Analysis Pipeline&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="s2">&quot;load&quot;</span><span class="p">,</span> <span class="s2">&quot;Load Data&quot;</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="s2">&quot;stadium&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="s2">&quot;proc&quot;</span><span class="p">,</span> <span class="s2">&quot;Process&quot;</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="s2">&quot;rounded&quot;</span><span class="p">,</span> <span class="n">emphasis</span><span class="o">=</span><span class="s2">&quot;primary&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="s2">&quot;save&quot;</span><span class="p">,</span> <span class="s2">&quot;Save Results&quot;</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="s2">&quot;stadium&quot;</span><span class="p">,</span> <span class="n">emphasis</span><span class="o">=</span><span class="s2">&quot;success&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="s2">&quot;load&quot;</span><span class="p">,</span> <span class="s2">&quot;proc&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="s2">&quot;proc&quot;</span><span class="p">,</span> <span class="s2">&quot;save&quot;</span><span class="p">)</span>
+
+<span class="c1"># Export</span>
+<span class="n">d</span><span class="o">.</span><span class="n">to_mermaid</span><span class="p">(</span><span class="s2">&quot;pipeline.mmd&quot;</span><span class="p">)</span>
+<span class="n">d</span><span class="o">.</span><span class="n">to_graphviz</span><span class="p">(</span><span class="s2">&quot;pipeline.dot&quot;</span><span class="p">)</span>
+
+<span class="c1"># Or from YAML specification</span>
+<span class="n">d</span> <span class="o">=</span> <span class="n">Diagram</span><span class="o">.</span><span class="n">from_yaml</span><span class="p">(</span><span class="s2">&quot;pipeline.diagram.yaml&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="yaml-specification">
+<h2>YAML Specification<a class="headerlink" href="#yaml-specification" title="Link to this heading"></a></h2>
+<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="nt">type</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">workflow</span>
+<span class="nt">title</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">SciTeX Analysis Pipeline</span>
+
+<span class="nt">paper</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">column</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">single</span><span class="w">          </span><span class="c1"># single or double</span>
+<span class="w">  </span><span class="nt">mode</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">publication</span><span class="w">       </span><span class="c1"># draft or publication</span>
+<span class="w">  </span><span class="nt">reading_direction</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">left_to_right</span>
+
+<span class="nt">layout</span><span class="p">:</span>
+<span class="w">  </span><span class="nt">groups</span><span class="p">:</span>
+<span class="w">    </span><span class="nt">Input</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">[</span><span class="nv">load</span><span class="p p-Indicator">,</span><span class="w"> </span><span class="nv">preprocess</span><span class="p p-Indicator">]</span>
+<span class="w">    </span><span class="nt">Analysis</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">[</span><span class="nv">analyze</span><span class="p p-Indicator">,</span><span class="w"> </span><span class="nv">test</span><span class="p p-Indicator">]</span>
+
+<span class="nt">nodes</span><span class="p">:</span>
+<span class="w">  </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="nt">id</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">load</span>
+<span class="w">    </span><span class="nt">label</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">Load Data</span>
+<span class="w">    </span><span class="nt">shape</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">stadium</span>
+<span class="w">  </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="nt">id</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">analyze</span>
+<span class="w">    </span><span class="nt">label</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">Statistical Test</span>
+<span class="w">    </span><span class="nt">shape</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">rounded</span>
+<span class="w">    </span><span class="nt">emphasis</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">primary</span>
+
+<span class="nt">edges</span><span class="p">:</span>
+<span class="w">  </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="nt">from</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">load</span>
+<span class="w">    </span><span class="nt">to</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">analyze</span>
+</pre></div>
+</div>
+</section>
+<section id="node-shapes">
+<h2>Node Shapes<a class="headerlink" href="#node-shapes" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">box</span></code>, <code class="docutils literal notranslate"><span class="pre">rounded</span></code>, <code class="docutils literal notranslate"><span class="pre">stadium</span></code>, <code class="docutils literal notranslate"><span class="pre">diamond</span></code>, <code class="docutils literal notranslate"><span class="pre">circle</span></code>, <code class="docutils literal notranslate"><span class="pre">codeblock</span></code></p>
+</section>
+<section id="node-emphasis">
+<h2>Node Emphasis<a class="headerlink" href="#node-emphasis" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">normal</span></code> – Default (dark)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">primary</span></code> – Key nodes (blue)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">success</span></code> – Positive outcomes (green)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">warning</span></code> – Issues (red)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">muted</span></code> – Secondary (gray)</p></li>
+</ul>
+</section>
+<section id="diagram-types">
+<h2>Diagram Types<a class="headerlink" href="#diagram-types" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">workflow</span></code> – Left-to-right sequential processes</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">decision</span></code> – Top-to-bottom decision trees</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pipeline</span></code> – Data pipeline stages</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">hierarchy</span></code> – Tree structures</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">comparison</span></code> – Side-by-side comparison</p></li>
+</ul>
+</section>
+<section id="paper-modes">
+<h2>Paper Modes<a class="headerlink" href="#paper-modes" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>draft</strong> – Full arrows, medium spacing, all edges visible</p></li>
+<li><p><strong>publication</strong> – Tight spacing, return edges invisible, optimized for column width</p></li>
+</ul>
+</section>
+<section id="backends">
+<h2>Backends<a class="headerlink" href="#backends" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>Mermaid</strong> (<code class="docutils literal notranslate"><span class="pre">.mmd</span></code>) – Web/markdown rendering</p></li>
+<li><p><strong>Graphviz DOT</strong> (<code class="docutils literal notranslate"><span class="pre">.dot</span></code>) – Tighter layouts, render with <code class="docutils literal notranslate"><span class="pre">dot</span> <span class="pre">-Tpng</span></code></p></li>
+<li><p><strong>YAML</strong> (<code class="docutils literal notranslate"><span class="pre">.diagram.yaml</span></code>) – Semantic spec, human/LLM-readable</p></li>
+</ul>
+</section>
+<section id="module-scitex.diagram">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.diagram" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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diff --git a/src/scitex/_sphinx_html/source/api/dict.html b/src/scitex/_sphinx_html/source/api/dict.html
new file mode 100644
index 000000000..153e63732
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/dict.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>dict Module (stx.dict) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
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+</head>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/dict.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.dict">
+<span id="dict-module-stx-dict"></span><h1>dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)<a class="headerlink" href="#module-scitex.dict" title="Link to this heading"></a></h1>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+  </script> 
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diff --git a/src/scitex/_sphinx_html/source/api/dsp.html b/src/scitex/_sphinx_html/source/api/dsp.html
new file mode 100644
index 000000000..a910a4fae
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/dsp.html
@@ -0,0 +1,742 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>DSP Module (stx.dsp) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/dsp.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="dsp-module-stx-dsp">
+<h1>DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)<a class="headerlink" href="#dsp-module-stx-dsp" title="Link to this heading"></a></h1>
+<p>Digital signal processing tools for filtering, spectral analysis,
+and time-frequency decomposition.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="c1"># Generate test signal</span>
+<span class="n">fs</span> <span class="o">=</span> <span class="mi">1000</span>  <span class="c1"># Hz</span>
+<span class="n">t</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="o">/</span><span class="n">fs</span><span class="p">)</span>
+<span class="n">signal</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="mi">10</span> <span class="o">*</span> <span class="n">t</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="mi">50</span> <span class="o">*</span> <span class="n">t</span><span class="p">)</span>
+
+<span class="c1"># Filtering</span>
+<span class="n">filtered</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">filt</span><span class="o">.</span><span class="n">bandpass</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">low</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">high</span><span class="o">=</span><span class="mi">30</span><span class="p">)</span>
+<span class="n">low_pass</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">filt</span><span class="o">.</span><span class="n">lowpass</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">cutoff</span><span class="o">=</span><span class="mi">20</span><span class="p">)</span>
+<span class="n">high_pass</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">filt</span><span class="o">.</span><span class="n">highpass</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">cutoff</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+
+<span class="c1"># Power spectral density</span>
+<span class="n">freqs</span><span class="p">,</span> <span class="n">psd</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">psd</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">)</span>
+
+<span class="c1"># Band powers</span>
+<span class="n">powers</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">band_powers</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">bands</span><span class="o">=</span><span class="p">{</span>
+    <span class="s2">&quot;delta&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">),</span>
+    <span class="s2">&quot;theta&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">4</span><span class="p">,</span> <span class="mi">8</span><span class="p">),</span>
+    <span class="s2">&quot;alpha&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">13</span><span class="p">),</span>
+    <span class="s2">&quot;beta&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">13</span><span class="p">,</span> <span class="mi">30</span><span class="p">),</span>
+<span class="p">})</span>
+
+<span class="c1"># Hilbert transform (analytic signal)</span>
+<span class="n">analytic</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">hilbert</span><span class="p">(</span><span class="n">signal</span><span class="p">)</span>
+<span class="n">amplitude</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">analytic</span><span class="p">)</span>
+<span class="n">phase</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">angle</span><span class="p">(</span><span class="n">analytic</span><span class="p">)</span>
+
+<span class="c1"># Wavelet decomposition</span>
+<span class="n">coeffs</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">dsp</span><span class="o">.</span><span class="n">wavelet</span><span class="p">(</span><span class="n">signal</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="n">fs</span><span class="p">,</span> <span class="n">freqs</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">50</span><span class="p">))</span>
+</pre></div>
+</div>
+</section>
+<section id="available-functions">
+<h2>Available Functions<a class="headerlink" href="#available-functions" title="Link to this heading"></a></h2>
+<p><strong>Filtering</strong> (<code class="docutils literal notranslate"><span class="pre">stx.dsp.filt</span></code>)</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">bandpass(signal,</span> <span class="pre">fs,</span> <span class="pre">low,</span> <span class="pre">high)</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">lowpass(signal,</span> <span class="pre">fs,</span> <span class="pre">cutoff)</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">highpass(signal,</span> <span class="pre">fs,</span> <span class="pre">cutoff)</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">notch(signal,</span> <span class="pre">fs,</span> <span class="pre">freq)</span></code></p></li>
+</ul>
+<p><strong>Spectral Analysis</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">psd(signal,</span> <span class="pre">fs)</span></code> – Power spectral density</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">band_powers(signal,</span> <span class="pre">fs,</span> <span class="pre">bands)</span></code> – Power in frequency bands</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">wavelet(signal,</span> <span class="pre">fs,</span> <span class="pre">freqs)</span></code> – Continuous wavelet transform</p></li>
+</ul>
+<p><strong>Time-Frequency</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">hilbert(signal)</span></code> – Analytic signal via Hilbert transform</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pac(signal,</span> <span class="pre">fs)</span></code> – Phase-amplitude coupling</p></li>
+</ul>
+<p><strong>Utilities</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">demo_sig(fs,</span> <span class="pre">duration)</span></code> – Generate demo signals for testing</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">crop(signal,</span> <span class="pre">start,</span> <span class="pre">end,</span> <span class="pre">fs)</span></code> – Crop signal to time range</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">detect_ripples(signal,</span> <span class="pre">fs)</span></code> – Detect sharp-wave ripples</p></li>
+</ul>
+</section>
+<section id="module-scitex.dsp">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.dsp" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
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diff --git a/src/scitex/_sphinx_html/source/api/etc.html b/src/scitex/_sphinx_html/source/api/etc.html
new file mode 100644
index 000000000..6723ab46d
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@@ -0,0 +1,777 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <title>etc Module (stx.etc) &mdash; SciTeX v0.0.0</title>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/etc.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.etc">
+<span id="etc-module-stx-etc"></span><h1>etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)<a class="headerlink" href="#module-scitex.etc" title="Link to this heading"></a></h1>
+<p>Utility functions for miscellaneous tasks.</p>
+<p>This module provides utility functions that don’t fit into other categories,
+such as keyboard input handling for interactive programs.</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.etc.count">
+<span class="sig-prename descclassname"><span class="pre">scitex.etc.</span></span><span class="sig-name descname"><span class="pre">count</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">printer</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;built-in</span> <span class="pre">function</span> <span class="pre">print&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sleeper</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;built-in</span> <span class="pre">function</span> <span class="pre">sleep&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_etc/wait_key.html#count"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.etc.count" title="Link to this definition"></a></dt>
+<dd><p>Print an incrementing counter forever, sleeping 1s between values.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>printer</strong> (<em>callable</em><em>, </em><em>optional</em>) – Output sink, defaults to the builtin <code class="docutils literal notranslate"><span class="pre">print</span></code>. Injectable test seam.</p></li>
+<li><p><strong>sleeper</strong> (<em>callable</em><em>, </em><em>optional</em>) – One-arg sleep callable, defaults to <code class="docutils literal notranslate"><span class="pre">time.sleep</span></code>. Injectable so
+tests can run without real delay and bound the loop.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.etc.count_grids">
+<span class="sig-prename descclassname"><span class="pre">scitex.etc.</span></span><span class="sig-name descname"><span class="pre">count_grids</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">params_grid</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_etc/_grid.html#count_grids"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.etc.count_grids" title="Link to this definition"></a></dt>
+<dd><p>Return the total number of combinations in a parameter grid.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>params_grid</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span>) – Mapping of parameter name -&gt; list of candidate values.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Product of the lengths of all value lists.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.etc.yield_grids">
+<span class="sig-prename descclassname"><span class="pre">scitex.etc.</span></span><span class="sig-name descname"><span class="pre">yield_grids</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">params_grid</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">random</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_etc/_grid.html#yield_grids"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.etc.yield_grids" title="Link to this definition"></a></dt>
+<dd><p>Yield every parameter combination from a grid as a dict.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>params_grid</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span>) – Mapping of parameter name -&gt; list of candidate values.</p></li>
+<li><p><strong>random</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, yield the combinations in shuffled order (default False).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Yields<span class="colon">:</span></dt>
+<dd class="field-even"><p><em>dict</em> – One combination, mapping each parameter name to a single value.</p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">grid</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;a&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">],</span> <span class="s2">&quot;b&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="s2">&quot;y&quot;</span><span class="p">]}</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">list</span><span class="p">(</span><span class="n">yield_grids</span><span class="p">(</span><span class="n">grid</span><span class="p">))</span>
+<span class="go">[{&#39;a&#39;: 1, &#39;b&#39;: &#39;x&#39;}, {&#39;a&#39;: 1, &#39;b&#39;: &#39;y&#39;}, {&#39;a&#39;: 2, &#39;b&#39;: &#39;x&#39;}, {&#39;a&#39;: 2, &#39;b&#39;: &#39;y&#39;}]</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.etc.search">
+<span class="sig-prename descclassname"><span class="pre">scitex.etc.</span></span><span class="sig-name descname"><span class="pre">search</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">patterns</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strings</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">only_perfect_match</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">as_bool</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ensure_one</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_etc/_search.html#search"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.etc.search" title="Link to this definition"></a></dt>
+<dd><p>Search for patterns in strings using regular expressions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>patterns</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><em>list</em></a><em> of </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – The pattern(s) to search for. A single string or a list of strings.</p></li>
+<li><p><strong>strings</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><em>list</em></a><em> of </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – The string(s) to search in. A single string or a list of strings.</p></li>
+<li><p><strong>only_perfect_match</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, only exact matches are considered (default False).</p></li>
+<li><p><strong>as_bool</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, return a boolean mask instead of indices (default False).</p></li>
+<li><p><strong>ensure_one</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, assert exactly one match is found (default False).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><ul class="simple">
+<li><p>If <code class="docutils literal notranslate"><span class="pre">as_bool</span></code> is False: <code class="docutils literal notranslate"><span class="pre">(indices,</span> <span class="pre">matched_strings)</span></code> where
+<code class="docutils literal notranslate"><span class="pre">indices</span></code> is a list of int positions of matches.</p></li>
+<li><p>If <code class="docutils literal notranslate"><span class="pre">as_bool</span></code> is True: <code class="docutils literal notranslate"><span class="pre">(mask,</span> <span class="pre">matched_strings)</span></code> where <code class="docutils literal notranslate"><span class="pre">mask</span></code> is
+a boolean sequence (numpy array when numpy is installed, else a list)
+flagging matched positions.</p></li>
+</ul>
+</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)">tuple</a></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">patterns</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;orange&#39;</span><span class="p">,</span> <span class="s1">&#39;banana&#39;</span><span class="p">]</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">strings</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;apple&#39;</span><span class="p">,</span> <span class="s1">&#39;orange&#39;</span><span class="p">,</span> <span class="s1">&#39;apple&#39;</span><span class="p">,</span> <span class="s1">&#39;apple_juice&#39;</span><span class="p">,</span> <span class="s1">&#39;banana&#39;</span><span class="p">,</span> <span class="s1">&#39;orange_juice&#39;</span><span class="p">]</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">search</span><span class="p">(</span><span class="n">patterns</span><span class="p">,</span> <span class="n">strings</span><span class="p">)</span>
+<span class="go">([1, 4, 5], [&#39;orange&#39;, &#39;banana&#39;, &#39;orange_juice&#39;])</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">search</span><span class="p">(</span><span class="s1">&#39;orange&#39;</span><span class="p">,</span> <span class="n">strings</span><span class="p">)</span>
+<span class="go">([1, 5], [&#39;orange&#39;, &#39;orange_juice&#39;])</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+</section>
+
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diff --git a/src/scitex/_sphinx_html/source/api/events.html b/src/scitex/_sphinx_html/source/api/events.html
new file mode 100644
index 000000000..60253984b
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+
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/events.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.events">
+<span id="events-module-stx-events"></span><h1>events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)<a class="headerlink" href="#module-scitex.events" title="Link to this heading"></a></h1>
+</section>
+
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diff --git a/src/scitex/_sphinx_html/source/api/gen.html b/src/scitex/_sphinx_html/source/api/gen.html
new file mode 100644
index 000000000..08f0d46ca
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@@ -0,0 +1,704 @@
+
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+<!DOCTYPE html>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
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+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/gen.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="gen-module-stx-gen">
+<h1>Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)<a class="headerlink" href="#gen-module-stx-gen" title="Link to this heading"></a></h1>
+<p>General utilities for path management, shell commands, and system operations.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>Session management has moved to <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> (see <a class="reference internal" href="../../core_concepts.html"><span class="doc">Core Concepts</span></a>).
+The <code class="docutils literal notranslate"><span class="pre">scitex.gen.start()</span></code> / <code class="docutils literal notranslate"><span class="pre">scitex.gen.close()</span></code> pattern is deprecated.</p>
+</div>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Timestamped output directories</span>
+<span class="n">path</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">mk_spath</span><span class="p">(</span><span class="s2">&quot;./results&quot;</span><span class="p">)</span>
+<span class="c1"># → ./results/20260213_143022/</span>
+
+<span class="c1"># Run shell commands</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="s2">&quot;ls -la&quot;</span><span class="p">)</span>
+
+<span class="c1"># Clipboard operations</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="s2">&quot;text to clipboard&quot;</span><span class="p">)</span>
+<span class="n">text</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">paste</span><span class="p">()</span>
+
+<span class="c1"># String to valid path</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">gen</span><span class="o">.</span><span class="n">title2path</span><span class="p">(</span><span class="s2">&quot;My Experiment #1&quot;</span><span class="p">)</span>
+<span class="c1"># → &quot;my_experiment_1&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.gen">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.gen" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/gists.html b/src/scitex/_sphinx_html/source/api/gists.html
new file mode 100644
index 000000000..28abe7150
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/gists.html
@@ -0,0 +1,701 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>gists Module (stx.gists) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
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+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+        <div class="rst-content">
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/gists.rst" class="fa fa-github"> Edit on GitHub</a>
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+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.gists">
+<span id="gists-module-stx-gists"></span><h1>gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)<a class="headerlink" href="#module-scitex.gists" title="Link to this heading"></a></h1>
+<p>SigmaPlot macro conversion utilities.</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.gists.SigMacro_processFigure_S">
+<span class="sig-prename descclassname"><span class="pre">scitex.gists.</span></span><span class="sig-name descname"><span class="pre">SigMacro_processFigure_S</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_gists/_SigMacro_processFigure_S.html#SigMacro_processFigure_S"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.gists.SigMacro_processFigure_S" title="Link to this definition"></a></dt>
+<dd><p>Deprecated: Use sigmacro_process_figure_s() instead.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.gists.SigMacro_toBlue">
+<span class="sig-prename descclassname"><span class="pre">scitex.gists.</span></span><span class="sig-name descname"><span class="pre">SigMacro_toBlue</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_gists/_SigMacro_toBlue.html#SigMacro_toBlue"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.gists.SigMacro_toBlue" title="Link to this definition"></a></dt>
+<dd><p>Deprecated: Use sigmacro_to_blue() instead.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.gists.sigmacro_process_figure_s">
+<span class="sig-prename descclassname"><span class="pre">scitex.gists.</span></span><span class="sig-name descname"><span class="pre">sigmacro_process_figure_s</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_gists/_SigMacro_processFigure_S.html#sigmacro_process_figure_s"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.gists.sigmacro_process_figure_s" title="Link to this definition"></a></dt>
+<dd><p>Print a macro for SigmaPlot (v12.0) to format a panel.</p>
+<p>Please refer to the ‘Automating Routine Tasks’ section of the official documentation.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.gists.sigmacro_to_blue">
+<span class="sig-prename descclassname"><span class="pre">scitex.gists.</span></span><span class="sig-name descname"><span class="pre">sigmacro_to_blue</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_gists/_SigMacro_toBlue.html#sigmacro_to_blue"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.gists.sigmacro_to_blue" title="Link to this definition"></a></dt>
+<dd><p>Print a macro for SigmaPlot (v12.0) that changes the color and style of the selected object.</p>
+<p>Please refer to the ‘Automating Routine Tasks’ section of the official documentation.</p>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
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diff --git a/src/scitex/_sphinx_html/source/api/git.html b/src/scitex/_sphinx_html/source/api/git.html
new file mode 100644
index 000000000..c6f246355
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/git.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>git Module (stx.git) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/git.rst" class="fa fa-github"> Edit on GitHub</a>
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+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.git">
+<span id="git-module-stx-git"></span><h1>git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)<a class="headerlink" href="#module-scitex.git" title="Link to this heading"></a></h1>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
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+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+  </script> 
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/index.html b/src/scitex/_sphinx_html/source/api/index.html
new file mode 100644
index 000000000..82b206122
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/index.html
@@ -0,0 +1,1181 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>API Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+          
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+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">API Reference</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/index.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="api-reference">
+<h1>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h1>
+<p>SciTeX is organized into focused modules.
+All modules are accessible via <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex</span> <span class="pre">as</span> <span class="pre">stx</span></code> followed by <code class="docutils literal notranslate"><span class="pre">stx.&lt;module&gt;</span></code>.</p>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Core</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l2"><a class="reference internal" href="session.html#module-scitex.session">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="io.html">I/O Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#quick-start">Quick Start</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#key-functions">Key Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#hdf5-and-zarr-exploration">HDF5 and Zarr Exploration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#format-registry">Format Registry</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#caching">Caching</a></li>
+<li class="toctree-l2"><a class="reference internal" href="io.html#module-scitex.io">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#path-management">Path Management</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="config.html#module-scitex.config">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l2"><a class="reference internal" href="logging.html#module-scitex.logging">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="repro.html#module-scitex.repro">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="clew.html#module-scitex.clew">API Reference</a></li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Science &amp; Analysis</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l2"><a class="reference internal" href="stats.html#module-scitex.stats">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="plt.html">scitex.plt</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#figure-and-axis-creation">Figure and Axis Creation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#gallery">Gallery</a></li>
+<li class="toctree-l2"><a class="reference internal" href="plt.html#axis-methods">Axis Methods</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dsp.html#module-scitex.dsp">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#backends">Backends</a></li>
+<li class="toctree-l2"><a class="reference internal" href="diagram.html#module-scitex.diagram">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Literature &amp; Writing</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scholar.html#module-scitex.scholar">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#document-management">Document Management</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l2"><a class="reference internal" href="writer.html#module-scitex.writer">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html#scitex.notebook.parse_notebook"><code class="docutils literal notranslate"><span class="pre">parse_notebook()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html#scitex.notebook.get_code_cells"><code class="docutils literal notranslate"><span class="pre">get_code_cells()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html#scitex.notebook.get_notebook_name"><code class="docutils literal notranslate"><span class="pre">get_notebook_name()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html#scitex.notebook.verify_notebook"><code class="docutils literal notranslate"><span class="pre">verify_notebook()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html#scitex.notebook.check_notebook"><code class="docutils literal notranslate"><span class="pre">check_notebook()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html#scitex.notebook.compile_notebook"><code class="docutils literal notranslate"><span class="pre">compile_notebook()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html#scitex.notebook.CompiledNotebook"><code class="docutils literal notranslate"><span class="pre">CompiledNotebook</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebook.html#scitex.notebook.convert_notebook"><code class="docutils literal notranslate"><span class="pre">convert_notebook()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Machine Learning</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#training">Training</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#classification">Classification</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#metrics">Metrics</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#visualization">Visualization</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#other">Other</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ai.html#module-scitex.ai">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#architectures">Architectures</a></li>
+<li class="toctree-l2"><a class="reference internal" href="nn.html#module-scitex.nn">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.load"><code class="docutils literal notranslate"><span class="pre">load()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.save"><code class="docutils literal notranslate"><span class="pre">save()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.to_rgb"><code class="docutils literal notranslate"><span class="pre">to_rgb()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.to_bgr"><code class="docutils literal notranslate"><span class="pre">to_bgr()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.to_gray"><code class="docutils literal notranslate"><span class="pre">to_gray()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.resize"><code class="docutils literal notranslate"><span class="pre">resize()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.rotate"><code class="docutils literal notranslate"><span class="pre">rotate()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.flip"><code class="docutils literal notranslate"><span class="pre">flip()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.crop"><code class="docutils literal notranslate"><span class="pre">crop()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.pad"><code class="docutils literal notranslate"><span class="pre">pad()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.blur"><code class="docutils literal notranslate"><span class="pre">blur()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.sharpen"><code class="docutils literal notranslate"><span class="pre">sharpen()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.edge_detect"><code class="docutils literal notranslate"><span class="pre">edge_detect()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.threshold"><code class="docutils literal notranslate"><span class="pre">threshold()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.denoise"><code class="docutils literal notranslate"><span class="pre">denoise()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.rectangle"><code class="docutils literal notranslate"><span class="pre">rectangle()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.circle"><code class="docutils literal notranslate"><span class="pre">circle()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.line"><code class="docutils literal notranslate"><span class="pre">line()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.text"><code class="docutils literal notranslate"><span class="pre">text()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.polylines"><code class="docutils literal notranslate"><span class="pre">polylines()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cv.html#scitex.cv.arrow"><code class="docutils literal notranslate"><span class="pre">arrow()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Data &amp; I/O</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pd.html#module-scitex.pd">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="dataset.html">Dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html#supported-sources">Supported Sources</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html#quick-start">Quick Start</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html#key-functions">Key Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html#local-database">Local Database</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html#cli-access">CLI Access</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataset.html#module-scitex.dataset">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Infrastructure</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="app.html">App Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="app.html#overview">Overview</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html#quick-start">Quick Start</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html#key-features">Key Features</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html#creating-an-application">Creating an Application</a></li>
+<li class="toctree-l2"><a class="reference internal" href="app.html#module-scitex.app">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="cloud.html">Cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html#overview">Overview</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html#quick-start">Quick Start</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html#key-features">Key Features</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html#cli-access">CLI Access</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cloud.html#module-scitex.cloud">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#scitex.cli.print_help_recursive"><code class="docutils literal notranslate"><span class="pre">print_help_recursive()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#scitex.cli.format_python_signature"><code class="docutils literal notranslate"><span class="pre">format_python_signature()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#scitex.cli.group_to_json"><code class="docutils literal notranslate"><span class="pre">group_to_json()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#scitex.cli.help_recursive_to_json"><code class="docutils literal notranslate"><span class="pre">help_recursive_to_json()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="capture.html">Capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="capture.html#quick-start">Quick Start</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html#key-functions">Key Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html#use-cases">Use Cases</a></li>
+<li class="toctree-l2"><a class="reference internal" href="capture.html#module-scitex.capture">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="audio.html">Audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="audio.html#quick-start">Quick Start</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html#key-functions">Key Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html#use-cases">Use Cases</a></li>
+<li class="toctree-l2"><a class="reference internal" href="audio.html#module-scitex.audio">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="notification.html">Notification Module (<code class="docutils literal notranslate"><span class="pre">stx.notification</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="notification.html#supported-backends">Supported Backends</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notification.html#quick-start">Quick Start</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notification.html#key-functions">Key Functions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notification.html#integration-with-stx-session">Integration with <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="notification.html#cli-access">CLI Access</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notification.html#module-scitex.notification">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Development</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="dev.html">Dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#overview">Overview</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#ecosystem-management">Ecosystem Management</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#llm-friendly-types">LLM-friendly Types</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#mcp-and-cli-wrappers">MCP and CLI Wrappers</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#documentation">Documentation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#hot-reload">Hot Reload</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#hpc-testing">HPC Testing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#bulk-rename">Bulk Rename</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dev.html#module-scitex.dev">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#python-api">Python API</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#mcp-interface">MCP Interface</a></li>
+<li class="toctree-l2"><a class="reference internal" href="template.html#module-scitex.template">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="linter.html">Linter Module (<code class="docutils literal notranslate"><span class="pre">stx.linter</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="linter.html#quick-start">Quick Start</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linter.html#rule-categories">Rule Categories</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linter.html#severity-levels">Severity Levels</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linter.html#plugin-architecture">Plugin Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linter.html#interfaces">Interfaces</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linter.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linter.html#example-output">Example Output</a></li>
+<li class="toctree-l2"><a class="reference internal" href="linter.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introspect.html#module-scitex.introspect">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="audit.html#scitex.audit.audit"><code class="docutils literal notranslate"><span class="pre">audit()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Utilities</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gen.html#module-scitex.gen">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#caching">Caching</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l2"><a class="reference internal" href="decorators.html#module-scitex.decorators">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="os.html#scitex.os.check_host"><code class="docutils literal notranslate"><span class="pre">check_host()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html#scitex.os.is_host"><code class="docutils literal notranslate"><span class="pre">is_host()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html#scitex.os.mv"><code class="docutils literal notranslate"><span class="pre">mv()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="os.html#scitex.os.verify_host"><code class="docutils literal notranslate"><span class="pre">verify_host()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html#scitex.parallel.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="rng.html#scitex.rng.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.detect_environment"><code class="docutils literal notranslate"><span class="pre">detect_environment()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.get_notebook_directory"><code class="docutils literal notranslate"><span class="pre">get_notebook_directory()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.get_notebook_info_simple"><code class="docutils literal notranslate"><span class="pre">get_notebook_info_simple()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.get_notebook_name"><code class="docutils literal notranslate"><span class="pre">get_notebook_name()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.get_notebook_path"><code class="docutils literal notranslate"><span class="pre">get_notebook_path()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.get_output_directory"><code class="docutils literal notranslate"><span class="pre">get_output_directory()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.is_ipython"><code class="docutils literal notranslate"><span class="pre">is_ipython()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.is_notebook"><code class="docutils literal notranslate"><span class="pre">is_notebook()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.is_script"><code class="docutils literal notranslate"><span class="pre">is_script()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.quiet"><code class="docutils literal notranslate"><span class="pre">quiet()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="context.html#scitex.context.suppress_output"><code class="docutils literal notranslate"><span class="pre">suppress_output()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.get_host_config"><code class="docutils literal notranslate"><span class="pre">get_host_config()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.get_host_name"><code class="docutils literal notranslate"><span class="pre">get_host_name()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.load_config"><code class="docutils literal notranslate"><span class="pre">load_config()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.get_machine_config"><code class="docutils literal notranslate"><span class="pre">get_machine_config()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.get_machine_name"><code class="docutils literal notranslate"><span class="pre">get_machine_name()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.get_metrics"><code class="docutils literal notranslate"><span class="pre">get_metrics()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.get_processor_usages"><code class="docutils literal notranslate"><span class="pre">get_processor_usages()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.get_specs"><code class="docutils literal notranslate"><span class="pre">get_specs()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.log_processor_usages"><code class="docutils literal notranslate"><span class="pre">log_processor_usages()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="resource.html#scitex.resource.main"><code class="docutils literal notranslate"><span class="pre">main()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="etc.html#scitex.etc.count"><code class="docutils literal notranslate"><span class="pre">count()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html#scitex.etc.count_grids"><code class="docutils literal notranslate"><span class="pre">count_grids()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html#scitex.etc.yield_grids"><code class="docutils literal notranslate"><span class="pre">yield_grids()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="etc.html#scitex.etc.search"><code class="docutils literal notranslate"><span class="pre">search()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#strategy">Strategy:</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#typical-usage">Typical usage:</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#available-profiles">Available profiles:</a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.load_docx"><code class="docutils literal notranslate"><span class="pre">load_docx()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.save_docx"><code class="docutils literal notranslate"><span class="pre">save_docx()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.convert_docx_to_tex"><code class="docutils literal notranslate"><span class="pre">convert_docx_to_tex()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.list_profiles"><code class="docutils literal notranslate"><span class="pre">list_profiles()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.get_profile"><code class="docutils literal notranslate"><span class="pre">get_profile()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.register_profile"><code class="docutils literal notranslate"><span class="pre">register_profile()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.BaseWordProfile"><code class="docutils literal notranslate"><span class="pre">BaseWordProfile</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.WordReader"><code class="docutils literal notranslate"><span class="pre">WordReader</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.WordWriter"><code class="docutils literal notranslate"><span class="pre">WordWriter</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.link_captions_to_images"><code class="docutils literal notranslate"><span class="pre">link_captions_to_images()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.link_captions_to_images_by_proximity"><code class="docutils literal notranslate"><span class="pre">link_captions_to_images_by_proximity()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.normalize_section_headings"><code class="docutils literal notranslate"><span class="pre">normalize_section_headings()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.validate_document"><code class="docutils literal notranslate"><span class="pre">validate_document()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.create_post_import_hook"><code class="docutils literal notranslate"><span class="pre">create_post_import_hook()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.diff_docx"><code class="docutils literal notranslate"><span class="pre">diff_docx()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.summarize_diff"><code class="docutils literal notranslate"><span class="pre">summarize_diff()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.mark_additions"><code class="docutils literal notranslate"><span class="pre">mark_additions()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.mark_modifications"><code class="docutils literal notranslate"><span class="pre">mark_modifications()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.extract_highlights"><code class="docutils literal notranslate"><span class="pre">extract_highlights()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.clear_highlights"><code class="docutils literal notranslate"><span class="pre">clear_highlights()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.preserve_bold_tokens"><code class="docutils literal notranslate"><span class="pre">preserve_bold_tokens()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.extract_comments"><code class="docutils literal notranslate"><span class="pre">extract_comments()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.apply_comments_as_edits"><code class="docutils literal notranslate"><span class="pre">apply_comments_as_edits()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.enable_track_changes"><code class="docutils literal notranslate"><span class="pre">enable_track_changes()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.is_track_changes_enabled"><code class="docutils literal notranslate"><span class="pre">is_track_changes_enabled()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.wrap_as_tracked_insertion"><code class="docutils literal notranslate"><span class="pre">wrap_as_tracked_insertion()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.wrap_as_tracked_deletion"><code class="docutils literal notranslate"><span class="pre">wrap_as_tracked_deletion()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.extract_tracked_changes"><code class="docutils literal notranslate"><span class="pre">extract_tracked_changes()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.accept_all_tracked_changes"><code class="docutils literal notranslate"><span class="pre">accept_all_tracked_changes()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="msword.html#scitex.msword.reject_all_tracked_changes"><code class="docutils literal notranslate"><span class="pre">reject_all_tracked_changes()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="compat.html#scitex.compat.deprecated"><code class="docutils literal notranslate"><span class="pre">deprecated()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html#scitex.compat.notify"><code class="docutils literal notranslate"><span class="pre">notify()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="compat.html#scitex.compat.notify_async"><code class="docutils literal notranslate"><span class="pre">notify_async()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gists.html#scitex.gists.SigMacro_processFigure_S"><code class="docutils literal notranslate"><span class="pre">SigMacro_processFigure_S()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html#scitex.gists.SigMacro_toBlue"><code class="docutils literal notranslate"><span class="pre">SigMacro_toBlue()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html#scitex.gists.sigmacro_process_figure_s"><code class="docutils literal notranslate"><span class="pre">sigmacro_process_figure_s()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="gists.html#scitex.gists.sigmacro_to_blue"><code class="docutils literal notranslate"><span class="pre">sigmacro_to_blue()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="security.html#scitex.security.check_github_alerts"><code class="docutils literal notranslate"><span class="pre">check_github_alerts()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html#scitex.security.save_alerts_to_file"><code class="docutils literal notranslate"><span class="pre">save_alerts_to_file()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html#scitex.security.get_latest_alerts_file"><code class="docutils literal notranslate"><span class="pre">get_latest_alerts_file()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html#scitex.security.format_alerts_report"><code class="docutils literal notranslate"><span class="pre">format_alerts_report()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="security.html#scitex.security.GitHubSecurityError"><code class="docutils literal notranslate"><span class="pre">GitHubSecurityError</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="ui.html#scitex.ui.get_component"><code class="docutils literal notranslate"><span class="pre">get_component()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html#scitex.ui.list_components"><code class="docutils literal notranslate"><span class="pre">list_components()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html#scitex.ui.get_static_dir"><code class="docutils literal notranslate"><span class="pre">get_static_dir()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="ui.html#scitex.ui.get_docs_path"><code class="docutils literal notranslate"><span class="pre">get_docs_path()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Other</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</div>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
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+  <hr/>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/introspect.html b/src/scitex/_sphinx_html/source/api/introspect.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/introspect.html
@@ -0,0 +1,739 @@
+
+
+<!DOCTYPE html>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/gen.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#utilities">Utilities</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/introspect.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="introspect-module-stx-introspect">
+<h1>Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)<a class="headerlink" href="#introspect-module-stx-introspect" title="Link to this heading"></a></h1>
+<p>IPython-like code inspection for exploring Python packages.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Function signature (like IPython&#39;s func?)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">q</span><span class="p">(</span><span class="s2">&quot;scitex.stats.test_ttest_ind&quot;</span><span class="p">)</span>
+<span class="c1"># → name, signature, parameters, return type</span>
+
+<span class="c1"># Full source code (like IPython&#39;s func??)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">qq</span><span class="p">(</span><span class="s2">&quot;scitex.stats.test_ttest_ind&quot;</span><span class="p">)</span>
+<span class="c1"># → complete source with line numbers</span>
+
+<span class="c1"># List module members (like enhanced dir())</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">dir</span><span class="p">(</span><span class="s2">&quot;scitex.plt&quot;</span><span class="p">,</span> <span class="nb">filter</span><span class="o">=</span><span class="s2">&quot;public&quot;</span><span class="p">,</span> <span class="n">kind</span><span class="o">=</span><span class="s2">&quot;functions&quot;</span><span class="p">)</span>
+
+<span class="c1"># Recursive API tree</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">list_api</span><span class="p">(</span><span class="s2">&quot;scitex&quot;</span><span class="p">,</span> <span class="n">max_depth</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="ipython-style-shortcuts">
+<h2>IPython-Style Shortcuts<a class="headerlink" href="#ipython-style-shortcuts" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">q(dotted_path)</span></code> – Signature and parameters (like <code class="docutils literal notranslate"><span class="pre">func?</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">qq(dotted_path)</span></code> – Full source code (like <code class="docutils literal notranslate"><span class="pre">func??</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">dir(dotted_path,</span> <span class="pre">filter,</span> <span class="pre">kind)</span></code> – List members with filtering</p></li>
+</ul>
+<p>Filters: <code class="docutils literal notranslate"><span class="pre">&quot;public&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;private&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;dunder&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;all&quot;</span></code></p>
+<p>Kinds: <code class="docutils literal notranslate"><span class="pre">&quot;functions&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;classes&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;data&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;modules&quot;</span></code></p>
+</section>
+<section id="documentation">
+<h2>Documentation<a class="headerlink" href="#documentation" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get_docstring(path,</span> <span class="pre">format)</span></code> – Extract docstrings (<code class="docutils literal notranslate"><span class="pre">&quot;raw&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;parsed&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">&quot;summary&quot;</span></code>)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_exports(path)</span></code> – Get <code class="docutils literal notranslate"><span class="pre">__all__</span></code> exports</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">find_examples(path)</span></code> – Find usage examples in tests/examples</p></li>
+</ul>
+</section>
+<section id="type-analysis">
+<h2>Type Analysis<a class="headerlink" href="#type-analysis" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get_type_hints_detailed(path)</span></code> – Full type annotation analysis</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_class_hierarchy(path)</span></code> – Inheritance tree (MRO + subclasses)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_class_annotations(path)</span></code> – Class variable annotations</p></li>
+</ul>
+</section>
+<section id="code-analysis">
+<h2>Code Analysis<a class="headerlink" href="#code-analysis" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get_imports(path,</span> <span class="pre">categorize)</span></code> – All imports (AST-based, grouped by stdlib/third-party/local)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_dependencies(path,</span> <span class="pre">recursive)</span></code> – Module dependency tree</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">get_call_graph(path,</span> <span class="pre">max_depth)</span></code> – Function call graph (with timeout protection)</p></li>
+</ul>
+</section>
+<section id="api-tree">
+<h2>API Tree<a class="headerlink" href="#api-tree" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Generate full module tree as DataFrame</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">introspect</span><span class="o">.</span><span class="n">list_api</span><span class="p">(</span><span class="s2">&quot;scitex&quot;</span><span class="p">,</span> <span class="n">max_depth</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span> <span class="n">docstring</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
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+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.introspect" title="Link to this heading"></a></h2>
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diff --git a/src/scitex/_sphinx_html/source/api/io.html b/src/scitex/_sphinx_html/source/api/io.html
new file mode 100644
index 000000000..026ee7adf
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+
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">I/O Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/io.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="i-o-module-stx-io">
+<h1>I/O Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)<a class="headerlink" href="#i-o-module-stx-io" title="Link to this heading"></a></h1>
+<p>Unified file I/O for 30+ scientific data formats. A single <code class="docutils literal notranslate"><span class="pre">save()</span></code>
+and <code class="docutils literal notranslate"><span class="pre">load()</span></code> interface handles format detection by file extension,
+so you never need to remember which library reads <code class="docutils literal notranslate"><span class="pre">.npy</span></code> vs <code class="docutils literal notranslate"><span class="pre">.h5</span></code>
+vs <code class="docutils literal notranslate"><span class="pre">.parquet</span></code>.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>Core format handlers are provided by the standalone
+<a class="reference external" href="https://github.com/ywatanabe1989/scitex-io">scitex-io</a> package.
+<code class="docutils literal notranslate"><span class="pre">stx.io</span></code> adds integration with <code class="docutils literal notranslate"><span class="pre">stx.session</span></code> (provenance tracking),
+<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code> (claim verification), and automatic CSV export for figures.</p>
+</div>
+<section id="supported-formats">
+<h2>Supported Formats<a class="headerlink" href="#supported-formats" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 25.0%" />
+<col style="width: 75.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Category</p></th>
+<th class="head"><p>Extensions</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><strong>Tabular</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">.csv</span></code>, <code class="docutils literal notranslate"><span class="pre">.tsv</span></code>, <code class="docutils literal notranslate"><span class="pre">.xlsx</span></code>, <code class="docutils literal notranslate"><span class="pre">.xls</span></code>, <code class="docutils literal notranslate"><span class="pre">.parquet</span></code>, <code class="docutils literal notranslate"><span class="pre">.feather</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><strong>Array</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">.npy</span></code>, <code class="docutils literal notranslate"><span class="pre">.npz</span></code>, <code class="docutils literal notranslate"><span class="pre">.mat</span></code>, <code class="docutils literal notranslate"><span class="pre">.zarr</span></code>, <code class="docutils literal notranslate"><span class="pre">.h5</span></code> / <code class="docutils literal notranslate"><span class="pre">.hdf5</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><strong>Config</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">.yaml</span></code>, <code class="docutils literal notranslate"><span class="pre">.yml</span></code>, <code class="docutils literal notranslate"><span class="pre">.json</span></code>, <code class="docutils literal notranslate"><span class="pre">.toml</span></code>, <code class="docutils literal notranslate"><span class="pre">.ini</span></code>, <code class="docutils literal notranslate"><span class="pre">.conf</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><strong>Figure</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">.png</span></code>, <code class="docutils literal notranslate"><span class="pre">.jpg</span></code>, <code class="docutils literal notranslate"><span class="pre">.jpeg</span></code>, <code class="docutils literal notranslate"><span class="pre">.svg</span></code>, <code class="docutils literal notranslate"><span class="pre">.pdf</span></code>, <code class="docutils literal notranslate"><span class="pre">.tiff</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><strong>Text</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">.txt</span></code>, <code class="docutils literal notranslate"><span class="pre">.log</span></code>, <code class="docutils literal notranslate"><span class="pre">.md</span></code>, <code class="docutils literal notranslate"><span class="pre">.rst</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><strong>Audio</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">.wav</span></code>, <code class="docutils literal notranslate"><span class="pre">.mp3</span></code>, <code class="docutils literal notranslate"><span class="pre">.flac</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><strong>Serialized</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">.pkl</span></code>, <code class="docutils literal notranslate"><span class="pre">.pickle</span></code>, <code class="docutils literal notranslate"><span class="pre">.joblib</span></code></p></td>
+</tr>
+<tr class="row-odd"><td><p><strong>Bibliography</strong></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">.bib</span></code></p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="quick-start">
+<h2>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="c1"># --- Save and load a DataFrame ---</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">({</span><span class="s2">&quot;x&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">],</span> <span class="s2">&quot;y&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">,</span> <span class="mi">6</span><span class="p">]})</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="s2">&quot;results.csv&quot;</span><span class="p">)</span>
+<span class="n">df_loaded</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;results.csv&quot;</span><span class="p">)</span>
+
+<span class="c1"># --- Save and load a NumPy array ---</span>
+<span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">100</span><span class="p">,</span> <span class="mi">3</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="s2">&quot;data.npy&quot;</span><span class="p">)</span>
+<span class="n">arr_loaded</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;data.npy&quot;</span><span class="p">)</span>
+
+<span class="c1"># --- Save a figure (PNG + CSV data export) ---</span>
+<span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">stx_line</span><span class="p">([</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">],</span> <span class="nb">id</span><span class="o">=</span><span class="s2">&quot;my_data&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;plot.png&quot;</span><span class="p">)</span>
+<span class="c1"># Creates: plot.png, plot.csv, plot.yaml</span>
+</pre></div>
+</div>
+</section>
+<section id="key-functions">
+<h2>Key Functions<a class="headerlink" href="#key-functions" title="Link to this heading"></a></h2>
+<section id="save-obj-path-kwargs">
+<h3><code class="docutils literal notranslate"><span class="pre">save(obj,</span> <span class="pre">path,</span> <span class="pre">**kwargs)</span></code><a class="headerlink" href="#save-obj-path-kwargs" title="Link to this heading"></a></h3>
+<p>Save any supported object to a file. The format is determined by the
+file extension. Built-in features beyond simple save:</p>
+<ul class="simple">
+<li><p><strong>Auto directory creation</strong> – no <code class="docutils literal notranslate"><span class="pre">os.makedirs()</span></code> needed</p></li>
+<li><p><strong>Path resolution</strong> – relative paths resolve to <code class="docutils literal notranslate"><span class="pre">&lt;script_name&gt;_out/&lt;path&gt;</span></code></p></li>
+<li><p><strong>Symlinks</strong> – <code class="docutils literal notranslate"><span class="pre">symlink_from_cwd=True</span></code> for short access paths</p></li>
+<li><p><strong>Save logging</strong> – prints file path and size on success</p></li>
+<li><p><strong>Clew hash tracking</strong> – file hashes recorded automatically for verification</p></li>
+<li><p><strong>Figure CSV export</strong> – saves plot data alongside image files</p></li>
+</ul>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Format detected from extension</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;figure.pdf&quot;</span><span class="p">)</span>       <span class="c1"># Also exports CSV + YAML recipe</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="s2">&quot;output.parquet&quot;</span><span class="p">)</span>    <span class="c1"># DataFrame</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">({</span><span class="s2">&quot;lr&quot;</span><span class="p">:</span> <span class="mf">0.001</span><span class="p">},</span> <span class="s2">&quot;config.yaml&quot;</span><span class="p">)</span>  <span class="c1"># Dict</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="s2">&quot;weights.npy&quot;</span><span class="p">)</span>      <span class="c1"># NumPy array</span>
+
+<span class="c1"># Symlink for convenient access</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="s2">&quot;results/data.csv&quot;</span><span class="p">,</span> <span class="n">symlink_from_cwd</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="load-path">
+<h3><code class="docutils literal notranslate"><span class="pre">load(path)</span></code><a class="headerlink" href="#load-path" title="Link to this heading"></a></h3>
+<p>Load data from a file. Returns the appropriate Python object
+(DataFrame, ndarray, dict, etc.).</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;results.csv&quot;</span><span class="p">)</span>          <span class="c1"># -&gt; pd.DataFrame</span>
+<span class="n">arr</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;weights.npy&quot;</span><span class="p">)</span>         <span class="c1"># -&gt; np.ndarray</span>
+<span class="n">cfg</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;config.yaml&quot;</span><span class="p">)</span>         <span class="c1"># -&gt; dict</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;experiment.h5&quot;</span><span class="p">)</span>      <span class="c1"># -&gt; dict of arrays</span>
+</pre></div>
+</div>
+</section>
+<section id="load-configs-pattern-config-yaml">
+<h3><code class="docutils literal notranslate"><span class="pre">load_configs(pattern=&quot;./config/*.yaml&quot;)</span></code><a class="headerlink" href="#load-configs-pattern-config-yaml" title="Link to this heading"></a></h3>
+<p>Load and merge multiple YAML configuration files into a single
+<code class="docutils literal notranslate"><span class="pre">DotDict</span></code>. Used internally by <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> to build the
+<code class="docutils literal notranslate"><span class="pre">CONFIG</span></code> object.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">CONF</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load_configs</span><span class="p">(</span><span class="s2">&quot;./config/*.yaml&quot;</span><span class="p">)</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">CONF</span><span class="o">.</span><span class="n">MODEL</span><span class="o">.</span><span class="n">hidden_size</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="list-formats">
+<h3><code class="docutils literal notranslate"><span class="pre">list_formats()</span></code><a class="headerlink" href="#list-formats" title="Link to this heading"></a></h3>
+<p>List all registered format handlers.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">fmts</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">list_formats</span><span class="p">()</span>
+<span class="c1"># [&#39;.csv&#39;, &#39;.h5&#39;, &#39;.hdf5&#39;, &#39;.json&#39;, &#39;.mat&#39;, &#39;.npy&#39;, ...]</span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="hdf5-and-zarr-exploration">
+<h2>HDF5 and Zarr Exploration<a class="headerlink" href="#hdf5-and-zarr-exploration" title="Link to this heading"></a></h2>
+<p>For hierarchical formats, use the explorer interface:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># HDF5</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">explore_h5</span><span class="p">(</span><span class="s2">&quot;data.h5&quot;</span><span class="p">)</span>            <span class="c1"># Print tree structure</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">has_h5_key</span><span class="p">(</span><span class="s2">&quot;data.h5&quot;</span><span class="p">,</span> <span class="s2">&quot;/group/dataset&quot;</span><span class="p">)</span>
+
+<span class="c1"># Zarr</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">explore_zarr</span><span class="p">(</span><span class="s2">&quot;data.zarr&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">has_zarr_key</span><span class="p">(</span><span class="s2">&quot;data.zarr&quot;</span><span class="p">,</span> <span class="s2">&quot;/group/array&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="format-registry">
+<h2>Format Registry<a class="headerlink" href="#format-registry" title="Link to this heading"></a></h2>
+<p>Register custom loaders and savers for new file extensions:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="nd">@stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">register_loader</span><span class="p">(</span><span class="s2">&quot;.custom&quot;</span><span class="p">)</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">load_custom</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">parse_custom</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">register_saver</span><span class="p">(</span><span class="s2">&quot;.custom&quot;</span><span class="p">)</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">save_custom</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">path</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s2">&quot;w&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+        <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">serialize_custom</span><span class="p">(</span><span class="n">obj</span><span class="p">))</span>
+</pre></div>
+</div>
+</section>
+<section id="caching">
+<h2>Caching<a class="headerlink" href="#caching" title="Link to this heading"></a></h2>
+<p>Built-in load caching for repeated reads of the same file:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">configure_cache</span><span class="p">(</span><span class="n">maxsize</span><span class="o">=</span><span class="mi">128</span><span class="p">)</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;big_file.h5&quot;</span><span class="p">)</span>    <span class="c1"># First call: reads from disk</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;big_file.h5&quot;</span><span class="p">)</span>    <span class="c1"># Second call: from cache</span>
+
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">get_cache_info</span><span class="p">()</span>               <span class="c1"># Cache hit/miss statistics</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">clear_load_cache</span><span class="p">()</span>             <span class="c1"># Flush the cache</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.io">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.io" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/src/scitex/_sphinx_html/source/api/linalg.html b/src/scitex/_sphinx_html/source/api/linalg.html
new file mode 100644
index 000000000..e40a9fc4e
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/linalg.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
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+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/linalg.rst" class="fa fa-github"> Edit on GitHub</a>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.linalg">
+<span id="linalg-module-stx-linalg"></span><h1>linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)<a class="headerlink" href="#module-scitex.linalg" title="Link to this heading"></a></h1>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/source/api/linter.html b/src/scitex/_sphinx_html/source/api/linter.html
new file mode 100644
index 000000000..41714b545
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/linter.html
@@ -0,0 +1,853 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Linter Module (stx.linter) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+          
+          
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+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Linter Module (<code class="docutils literal notranslate"><span class="pre">stx.linter</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/linter.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="linter-module-stx-linter">
+<h1>Linter Module (<code class="docutils literal notranslate"><span class="pre">stx.linter</span></code>)<a class="headerlink" href="#linter-module-stx-linter" title="Link to this heading"></a></h1>
+<p>AST-based Python linter enforcing SciTeX conventions for reproducible
+scientific code. Uses a plugin architecture where each downstream
+package contributes its own rules.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">stx.linter</span></code> wraps the standalone
+<a class="reference external" href="https://github.com/ywatanabe1989/scitex-linter">scitex-linter</a> package.
+Install with: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-linter</span></code>.</p>
+</div>
+<section id="quick-start">
+<h2>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Check a file</span>
+scitex<span class="w"> </span>linter<span class="w"> </span>check<span class="w"> </span>my_script.py
+
+<span class="c1"># Check with specific severity</span>
+scitex<span class="w"> </span>linter<span class="w"> </span>check<span class="w"> </span>my_script.py<span class="w"> </span>--severity<span class="w"> </span>warning
+
+<span class="c1"># List all rules</span>
+scitex<span class="w"> </span>linter<span class="w"> </span>list-rules
+
+<span class="c1"># Filter by category</span>
+scitex<span class="w"> </span>linter<span class="w"> </span>list-rules<span class="w"> </span>--category<span class="w"> </span>session
+</pre></div>
+</div>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_linter</span><span class="w"> </span><span class="kn">import</span> <span class="n">check_file</span><span class="p">,</span> <span class="n">list_rules</span>
+
+<span class="c1"># Check a file</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">check_file</span><span class="p">(</span><span class="s2">&quot;my_script.py&quot;</span><span class="p">)</span>
+
+<span class="c1"># List available rules</span>
+<span class="n">rules</span> <span class="o">=</span> <span class="n">list_rules</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="rule-categories">
+<h2>Rule Categories<a class="headerlink" href="#rule-categories" title="Link to this heading"></a></h2>
+<p>47+ rules across 7 categories, contributed by multiple packages:</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 10.0%" />
+<col style="width: 20.0%" />
+<col style="width: 15.0%" />
+<col style="width: 55.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Prefix</p></th>
+<th class="head"><p>Category</p></th>
+<th class="head"><p>Source</p></th>
+<th class="head"><p>Examples</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">STX-S</span></code></p></td>
+<td><p><strong>Session</strong></p></td>
+<td><p>scitex-linter</p></td>
+<td><p>Missing <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>, missing <code class="docutils literal notranslate"><span class="pre">if</span> <span class="pre">__name__</span></code> guard, missing return,
+<code class="docutils literal notranslate"><span class="pre">load_configs()</span></code> result not UPPER_CASE, magic numbers in module scope</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">STX-I</span></code></p></td>
+<td><p><strong>Import</strong></p></td>
+<td><p>scitex-linter</p></td>
+<td><p>Using <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">mngs</span></code> instead of <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex</span></code>, bare <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">numpy</span></code>,
+wildcard imports</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">STX-IO</span></code></p></td>
+<td><p><strong>I/O</strong></p></td>
+<td><p>scitex-io</p></td>
+<td><p>Using <code class="docutils literal notranslate"><span class="pre">open()</span></code> instead of <code class="docutils literal notranslate"><span class="pre">stx.io</span></code>, hardcoded paths,
+using <code class="docutils literal notranslate"><span class="pre">pd.read_csv</span></code> directly</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">STX-P</span></code></p></td>
+<td><p><strong>Plotting</strong></p></td>
+<td><p>figrecipe</p></td>
+<td><p>Using <code class="docutils literal notranslate"><span class="pre">plt.show()</span></code> instead of <code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code>, missing <code class="docutils literal notranslate"><span class="pre">set_xyt</span></code>,
+using raw matplotlib calls</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">STX-ST</span></code></p></td>
+<td><p><strong>Statistics</strong></p></td>
+<td><p>scitex-stats</p></td>
+<td><p>Using <code class="docutils literal notranslate"><span class="pre">scipy.stats</span></code> directly instead of <code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>,
+missing multiple comparison correction</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">STX-PA</span></code></p></td>
+<td><p><strong>Path</strong></p></td>
+<td><p>scitex-linter</p></td>
+<td><p>Hardcoded absolute paths, missing <code class="docutils literal notranslate"><span class="pre">stx.gen.mk_spath</span></code></p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">STX-FM</span></code></p></td>
+<td><p><strong>Format</strong></p></td>
+<td><p>figrecipe</p></td>
+<td><p>Non-snake_case names, magic numbers, missing docstrings</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="severity-levels">
+<h2>Severity Levels<a class="headerlink" href="#severity-levels" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>error</strong> – Must fix (breaks reproducibility or correctness)</p></li>
+<li><p><strong>warning</strong> – Should fix (best practice violations)</p></li>
+<li><p><strong>info</strong> – Suggestions for improvement</p></li>
+</ul>
+</section>
+<section id="plugin-architecture">
+<h2>Plugin Architecture<a class="headerlink" href="#plugin-architecture" title="Link to this heading"></a></h2>
+<p>Each downstream package defines its own linter rules via the
+<code class="docutils literal notranslate"><span class="pre">scitex_linter.plugins</span></code> entry point. The linter discovers and
+aggregates rules automatically at runtime.</p>
+<div class="highlight-toml notranslate"><div class="highlight"><pre><span></span><span class="c1"># In a downstream package&#39;s pyproject.toml</span>
+<span class="k">[project.entry-points.</span><span class="s2">&quot;scitex_linter.plugins&quot;</span><span class="k">]</span>
+<span class="n">my_package</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s2">&quot;my_package._linter_plugin:get_plugin&quot;</span>
+</pre></div>
+</div>
+<p>The plugin function returns a dictionary of rules, call patterns,
+axes hints, and AST checker classes:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="k">def</span><span class="w"> </span><span class="nf">get_plugin</span><span class="p">():</span>
+    <span class="kn">from</span><span class="w"> </span><span class="nn">._rules</span><span class="w"> </span><span class="kn">import</span> <span class="n">MyRule001</span><span class="p">,</span> <span class="n">MyRule002</span>
+    <span class="k">return</span> <span class="p">{</span>
+        <span class="s2">&quot;rules&quot;</span><span class="p">:</span> <span class="p">[</span><span class="n">MyRule001</span><span class="p">,</span> <span class="n">MyRule002</span><span class="p">],</span>
+        <span class="s2">&quot;call_rules&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;my_func&quot;</span><span class="p">:</span> <span class="s2">&quot;Use stx.my_func() instead&quot;</span><span class="p">},</span>
+        <span class="s2">&quot;axes_hints&quot;</span><span class="p">:</span> <span class="p">{},</span>
+        <span class="s2">&quot;checkers&quot;</span><span class="p">:</span> <span class="p">[],</span>
+    <span class="p">}</span>
+</pre></div>
+</div>
+</section>
+<section id="interfaces">
+<h2>Interfaces<a class="headerlink" href="#interfaces" title="Link to this heading"></a></h2>
+<p>The linter is available through four interfaces:</p>
+<p><strong>CLI (via scitex):</strong></p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>linter<span class="w"> </span>check<span class="w"> </span>script.py
+scitex<span class="w"> </span>linter<span class="w"> </span>list-rules<span class="w"> </span>--category<span class="w"> </span>io<span class="w"> </span>--severity<span class="w"> </span>warning
+</pre></div>
+</div>
+<p><strong>Standalone CLI:</strong></p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex-linter<span class="w"> </span>check<span class="w"> </span>script.py
+</pre></div>
+</div>
+<p><strong>Python API:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_linter</span><span class="w"> </span><span class="kn">import</span> <span class="n">check_file</span><span class="p">,</span> <span class="n">check_source</span><span class="p">,</span> <span class="n">list_rules</span>
+
+<span class="n">results</span> <span class="o">=</span> <span class="n">check_file</span><span class="p">(</span><span class="s2">&quot;script.py&quot;</span><span class="p">)</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">check_source</span><span class="p">(</span><span class="s2">&quot;import numpy as np</span><span class="se">\n</span><span class="s2">...&quot;</span><span class="p">)</span>
+<span class="n">rules</span> <span class="o">=</span> <span class="n">list_rules</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s2">&quot;io&quot;</span><span class="p">,</span> <span class="n">severity</span><span class="o">=</span><span class="s2">&quot;warning&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><strong>Flake8 Plugin:</strong></p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>flake8<span class="w"> </span>--select<span class="o">=</span>STX<span class="w"> </span>script.py
+</pre></div>
+</div>
+<p><strong>MCP Tools (for AI agents):</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">linter_check</span><span class="p">(</span><span class="n">path</span><span class="o">=</span><span class="s2">&quot;script.py&quot;</span><span class="p">,</span> <span class="n">severity</span><span class="o">=</span><span class="s2">&quot;warning&quot;</span><span class="p">)</span>
+<span class="n">linter_list_rules</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s2">&quot;session&quot;</span><span class="p">)</span>
+<span class="n">linter_check_source</span><span class="p">(</span><span class="n">source</span><span class="o">=</span><span class="s2">&quot;...&quot;</span><span class="p">,</span> <span class="n">filepath</span><span class="o">=</span><span class="s2">&quot;&lt;stdin&gt;&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="configuration">
+<h2>Configuration<a class="headerlink" href="#configuration" title="Link to this heading"></a></h2>
+<p>Configure via <code class="docutils literal notranslate"><span class="pre">pyproject.toml</span></code>:</p>
+<div class="highlight-toml notranslate"><div class="highlight"><pre><span></span><span class="k">[tool.scitex-linter]</span>
+<span class="n">severity</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s2">&quot;warning&quot;</span>
+<span class="n">ignore</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">[</span><span class="s2">&quot;STX-S002&quot;</span><span class="p">,</span><span class="w"> </span><span class="s2">&quot;STX-FM001&quot;</span><span class="p">]</span>
+</pre></div>
+</div>
+</section>
+<section id="example-output">
+<h2>Example Output<a class="headerlink" href="#example-output" title="Link to this heading"></a></h2>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>my_script.py:3:1: STX-I001 [warning] Use &#39;import scitex as stx&#39; instead of &#39;import mngs&#39;
+my_script.py:15:5: STX-IO003 [error] Use &#39;stx.io.load()&#39; instead of &#39;pd.read_csv()&#39;
+my_script.py:22:1: STX-S001 [warning] Missing &#39;@stx.session&#39; decorator on main()
+
+3 issues found (1 error, 2 warnings)
+</pre></div>
+</div>
+</section>
+<section id="api-reference">
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/logging.html b/src/scitex/_sphinx_html/source/api/logging.html
new file mode 100644
index 000000000..4e7c4458f
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/logging.html
@@ -0,0 +1,1341 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Logging Module (stx.logging) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/logging.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="logging-module-stx-logging">
+<h1>Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)<a class="headerlink" href="#logging-module-stx-logging" title="Link to this heading"></a></h1>
+<p>Unified logging with file/console output, custom warnings, exception
+hierarchy, and stream redirection.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="kn">import</span> <span class="n">logging</span>
+
+<span class="c1"># Get a logger</span>
+<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">)</span>
+<span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;Processing data&quot;</span><span class="p">)</span>
+<span class="n">logger</span><span class="o">.</span><span class="n">success</span><span class="p">(</span><span class="s2">&quot;Analysis complete&quot;</span><span class="p">)</span>   <span class="c1"># Custom level (31)</span>
+<span class="n">logger</span><span class="o">.</span><span class="n">fail</span><span class="p">(</span><span class="s2">&quot;Model diverged&quot;</span><span class="p">)</span>         <span class="c1"># Custom level (35)</span>
+
+<span class="c1"># Configure globally</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">configure</span><span class="p">(</span><span class="n">level</span><span class="o">=</span><span class="s2">&quot;DEBUG&quot;</span><span class="p">,</span> <span class="n">log_file</span><span class="o">=</span><span class="s2">&quot;./run.log&quot;</span><span class="p">)</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">set_level</span><span class="p">(</span><span class="s2">&quot;WARNING&quot;</span><span class="p">)</span>
+
+<span class="c1"># Temporary file logging</span>
+<span class="k">with</span> <span class="n">logging</span><span class="o">.</span><span class="n">log_to_file</span><span class="p">(</span><span class="s2">&quot;analysis.log&quot;</span><span class="p">):</span>
+    <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;This goes to both console and file&quot;</span><span class="p">)</span>
+
+<span class="c1"># Warnings</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Large dataset&quot;</span><span class="p">,</span> <span class="n">category</span><span class="o">=</span><span class="n">logging</span><span class="o">.</span><span class="n">PerformanceWarning</span><span class="p">)</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">warn_deprecated</span><span class="p">(</span><span class="s2">&quot;old_func&quot;</span><span class="p">,</span> <span class="s2">&quot;new_func&quot;</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;3.0&quot;</span><span class="p">)</span>
+<span class="n">logging</span><span class="o">.</span><span class="n">filterwarnings</span><span class="p">(</span><span class="s2">&quot;ignore&quot;</span><span class="p">,</span> <span class="n">category</span><span class="o">=</span><span class="n">logging</span><span class="o">.</span><span class="n">UnitWarning</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="log-levels">
+<h2>Log Levels<a class="headerlink" href="#log-levels" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 15.0%" />
+<col style="width: 65.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Level</p></th>
+<th class="head"><p>Value</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">DEBUG</span></code></p></td>
+<td><p>10</p></td>
+<td><p>Detailed diagnostic information</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">INFO</span></code></p></td>
+<td><p>20</p></td>
+<td><p>General operational messages</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">WARNING</span></code></p></td>
+<td><p>30</p></td>
+<td><p>Something unexpected but not fatal</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">SUCCESS</span></code></p></td>
+<td><p>31</p></td>
+<td><p>Custom: operation completed successfully</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">FAIL</span></code></p></td>
+<td><p>35</p></td>
+<td><p>Custom: operation failed (non-fatal)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">ERROR</span></code></p></td>
+<td><p>40</p></td>
+<td><p>Serious problem</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">CRITICAL</span></code></p></td>
+<td><p>50</p></td>
+<td><p>Program may not continue</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="warning-categories">
+<h2>Warning Categories<a class="headerlink" href="#warning-categories" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code> – Base warning class</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code> – SI unit convention issues</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code> – Formatting issues</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code> – Deprecated features</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code> – Performance issues</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code> – Potential data loss</p></li>
+</ul>
+</section>
+<section id="exception-hierarchy">
+<h2>Exception Hierarchy<a class="headerlink" href="#exception-hierarchy" title="Link to this heading"></a></h2>
+<p>All inherit from <code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code>:</p>
+<ul class="simple">
+<li><p><strong>I/O</strong>: <code class="docutils literal notranslate"><span class="pre">IOError</span></code>, <code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code>, <code class="docutils literal notranslate"><span class="pre">SaveError</span></code>, <code class="docutils literal notranslate"><span class="pre">LoadError</span></code></p></li>
+<li><p><strong>Config</strong>: <code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code>, <code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code>, <code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></p></li>
+<li><p><strong>Path</strong>: <code class="docutils literal notranslate"><span class="pre">PathError</span></code>, <code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code>, <code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></p></li>
+<li><p><strong>Data</strong>: <code class="docutils literal notranslate"><span class="pre">DataError</span></code>, <code class="docutils literal notranslate"><span class="pre">ShapeError</span></code>, <code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></p></li>
+<li><p><strong>Plotting</strong>: <code class="docutils literal notranslate"><span class="pre">PlottingError</span></code>, <code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code>, <code class="docutils literal notranslate"><span class="pre">AxisError</span></code></p></li>
+<li><p><strong>Stats</strong>: <code class="docutils literal notranslate"><span class="pre">StatsError</span></code>, <code class="docutils literal notranslate"><span class="pre">TestError</span></code></p></li>
+<li><p><strong>Scholar</strong>: <code class="docutils literal notranslate"><span class="pre">ScholarError</span></code>, <code class="docutils literal notranslate"><span class="pre">SearchError</span></code>, <code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code>, <code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></p></li>
+<li><p><strong>NN</strong>: <code class="docutils literal notranslate"><span class="pre">NNError</span></code>, <code class="docutils literal notranslate"><span class="pre">ModelError</span></code></p></li>
+<li><p><strong>Template</strong>: <code class="docutils literal notranslate"><span class="pre">TemplateError</span></code>, <code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></p></li>
+</ul>
+</section>
+<section id="stream-redirection">
+<h2>Stream Redirection<a class="headerlink" href="#stream-redirection" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="kn">import</span> <span class="n">tee</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+
+<span class="c1"># Redirect stdout/stderr to log files</span>
+<span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span> <span class="o">=</span> <span class="n">tee</span><span class="p">(</span><span class="n">sys</span><span class="p">,</span> <span class="n">sdir</span><span class="o">=</span><span class="s2">&quot;./output&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>The <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> decorator handles this automatically.</p>
+</section>
+<section id="module-scitex.logging">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.logging" title="Link to this heading"></a></h2>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.getLogger">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">getLogger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/logging.html#getLogger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.getLogger" title="Link to this definition"></a></dt>
+<dd><p>Return a logger with the specified name, creating it if necessary.</p>
+<p>If no name is specified, return the root logger.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.configure">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">configure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">level</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'info'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">enable_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">enable_console</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">capture_prints</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_file_size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10485760</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">backup_count</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">5</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_config.html#configure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.configure" title="Link to this definition"></a></dt>
+<dd><p>Configure logging for SciTeX with both console and file output.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>level</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Log level (string or logging constant)</p></li>
+<li><p><strong>log_file</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Path to log file (default: ~/.scitex/logs/scitex-YYYY-MM-DD.log)</p></li>
+<li><p><strong>enable_file</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to enable file logging</p></li>
+<li><p><strong>enable_console</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to enable console logging</p></li>
+<li><p><strong>capture_prints</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to capture print() statements to logs</p></li>
+<li><p><strong>max_file_size</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum size of log file before rotation (default: 10MB)</p></li>
+<li><p><strong>backup_count</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Number of backup files to keep (default: 5)</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.set_level">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">set_level</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">level</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_config.html#set_level"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.set_level" title="Link to this definition"></a></dt>
+<dd><p>Set global log level for all SciTeX loggers.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.get_level">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">get_level</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_config.html#get_level"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.get_level" title="Link to this definition"></a></dt>
+<dd><p>Get current global log level.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.enable_file_logging">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">enable_file_logging</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">enabled</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_config.html#enable_file_logging"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.enable_file_logging" title="Link to this definition"></a></dt>
+<dd><p>Enable or disable file logging globally.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.is_file_logging_enabled">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">is_file_logging_enabled</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_config.html#is_file_logging_enabled"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.is_file_logging_enabled" title="Link to this definition"></a></dt>
+<dd><p>Check if file logging is enabled.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.get_log_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">get_log_path</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_config.html#get_log_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.get_log_path" title="Link to this definition"></a></dt>
+<dd><p>Get the current log file path.</p>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.logging.Tee">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">Tee</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">stream</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_Tee.html#Tee"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee" title="Link to this definition"></a></dt>
+<dd><dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.write">
+<span class="sig-name descname"><span class="pre">write</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_Tee.html#Tee.write"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.write" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.flush">
+<span class="sig-name descname"><span class="pre">flush</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_Tee.html#Tee.flush"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.flush" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.isatty">
+<span class="sig-name descname"><span class="pre">isatty</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_Tee.html#Tee.isatty"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.isatty" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.fileno">
+<span class="sig-name descname"><span class="pre">fileno</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_Tee.html#Tee.fileno"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.fileno" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="scitex.logging.Tee.buffer">
+<span class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></span><span class="sig-name descname"><span class="pre">buffer</span></span><a class="headerlink" href="#scitex.logging.Tee.buffer" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.Tee.close">
+<span class="sig-name descname"><span class="pre">close</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_Tee.html#Tee.close"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.Tee.close" title="Link to this definition"></a></dt>
+<dd><p>Explicitly close the log file.</p>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.tee">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">tee</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sdir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_Tee.html#tee"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.tee" title="Link to this definition"></a></dt>
+<dd><p>Redirects stdout and stderr to both console and log files.</p>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">,</span> <span class="n">sys</span><span class="o">.</span><span class="n">stderr</span> <span class="o">=</span> <span class="n">tee</span><span class="p">(</span><span class="n">sys</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="s2">&quot;abc&quot;</span><span class="p">)</span>  <span class="c1"># stdout</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">0</span><span class="p">)</span>  <span class="c1"># stderr</span>
+</pre></div>
+</div>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>sys_module</strong> (<em>module</em>) – System module containing stdout and stderr</p></li>
+<li><p><strong>sdir</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Directory for log files</p></li>
+<li><p><strong>verbose</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a><em>, </em><em>default=True</em>) – Whether to print log file locations</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Wrapped stdout and stderr objects</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)">tuple</a>[Any, Any]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.log_to_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">log_to_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">level</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'w'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">formatter</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_context.html#log_to_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.log_to_file" title="Link to this definition"></a></dt>
+<dd><p>Context manager to temporarily log all output to a specific file.</p>
+<dl>
+<dt>Usage:</dt><dd><p>import scitex_logging as logging
+logger = logging.getLogger(__name__)</p>
+<dl class="simple">
+<dt>with logging.log_to_file(“/path/to/log.txt”):</dt><dd><p>logger.info(“This goes to both console and /path/to/log.txt”)
+logger.success(“This too!”)</p>
+</dd>
+</dl>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to log file</p></li>
+<li><p><strong>level</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Logging level for this handler (default: DEBUG)</p></li>
+<li><p><strong>mode</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – File mode (‘w’ for overwrite, ‘a’ for append)</p></li>
+<li><p><strong>formatter</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/logging.html#logging.Formatter" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Formatter</span></code></a>]</span>) – Custom formatter (default: SciTeXFileFormatter)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Yields<span class="colon">:</span></dt>
+<dd class="field-even"><p><em>The file handler (can be ignored)</em></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SciTeXWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SciTeXWarning</span></span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#SciTeXWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SciTeXWarning" title="Link to this definition"></a></dt>
+<dd><p>Base warning class for all SciTeX warnings.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.UnitWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">UnitWarning</span></span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#UnitWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.UnitWarning" title="Link to this definition"></a></dt>
+<dd><p>Warning for axis label unit issues (educational for SI conventions).</p>
+<p>Raised when:
+- Axis labels are missing units
+- Units use parentheses instead of brackets (SI prefers [])
+- Units use division instead of negative exponents (m/s vs m·s⁻¹)</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.StyleWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">StyleWarning</span></span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#StyleWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.StyleWarning" title="Link to this definition"></a></dt>
+<dd><p>Warning for style/formatting issues.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SciTeXDeprecationWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SciTeXDeprecationWarning</span></span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#SciTeXDeprecationWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SciTeXDeprecationWarning" title="Link to this definition"></a></dt>
+<dd><p>Warning for deprecated SciTeX features.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PerformanceWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PerformanceWarning</span></span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#PerformanceWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PerformanceWarning" title="Link to this definition"></a></dt>
+<dd><p>Warning for performance issues.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.DataLossWarning">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">DataLossWarning</span></span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#DataLossWarning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.DataLossWarning" title="Link to this definition"></a></dt>
+<dd><p>Warning for potential data loss.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.warn">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">warn</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">category</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;class</span> <span class="pre">'scitex_logging._warnings.SciTeXWarning'&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stacklevel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#warn"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.warn" title="Link to this definition"></a></dt>
+<dd><p>Emit a warning (like warnings.warn but integrated with scitex.logging).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>message</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Warning message</p></li>
+<li><p><strong>category</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Type" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Type</span></code></a>[<a class="reference internal" href="#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a>]</span>) – Warning category (default: SciTeXWarning)</p></li>
+<li><p><strong>stacklevel</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Stack level for source location (default: 2 = caller)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">logging</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="kn">import</span> <span class="n">UnitWarning</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">logging</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;X axis has no units&quot;</span><span class="p">,</span> <span class="n">UnitWarning</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.filterwarnings">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">filterwarnings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">action</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">category</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;class</span> <span class="pre">'scitex_logging._warnings.SciTeXWarning'&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">message</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#filterwarnings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.filterwarnings" title="Link to this definition"></a></dt>
+<dd><p>Control warning behavior (like warnings.filterwarnings).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>action</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – One of:
+- “ignore”: Never show this warning
+- “error”: Raise as exception
+- “always”: Always show
+- “default”: Show first occurrence per location
+- “once”: Show only once total
+- “module”: Show once per module</p></li>
+<li><p><strong>category</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Type" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Type</span></code></a>[<a class="reference internal" href="#scitex.logging.SciTeXWarning" title="scitex_logging._warnings.SciTeXWarning"><code class="xref py py-class docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a>]</span>) – Warning category (default: SciTeXWarning = all)</p></li>
+<li><p><strong>message</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Regex pattern to match warning message (not implemented yet)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">logging</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.logging</span><span class="w"> </span><span class="kn">import</span> <span class="n">UnitWarning</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">logging</span><span class="o">.</span><span class="n">filterwarnings</span><span class="p">(</span><span class="s2">&quot;ignore&quot;</span><span class="p">,</span> <span class="n">category</span><span class="o">=</span><span class="n">UnitWarning</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.resetwarnings">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">resetwarnings</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#resetwarnings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.resetwarnings" title="Link to this definition"></a></dt>
+<dd><p>Reset all warning filters to default behavior.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.warn_deprecated">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">warn_deprecated</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">old_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">new_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#warn_deprecated"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.warn_deprecated" title="Link to this definition"></a></dt>
+<dd><p>Issue a deprecation warning.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.warn_performance">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">warn_performance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">operation</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#warn_performance"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.warn_performance" title="Link to this definition"></a></dt>
+<dd><p>Issue a performance warning.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.warn_data_loss">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">warn_data_loss</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">operation</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">detail</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_warnings.html#warn_data_loss"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.warn_data_loss" title="Link to this definition"></a></dt>
+<dd><p>Issue a data loss warning.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SciTeXError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SciTeXError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#SciTeXError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SciTeXError" title="Link to this definition"></a></dt>
+<dd><p>Base Exception class for all SciTeX errors.</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.logging.SciTeXError.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#SciTeXError.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SciTeXError.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize SciTeX error with detailed information.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>message</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – The error message</p></li>
+<li><p><strong>context</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>]</span>) – Additional context information (e.g., file paths, variable values)</p></li>
+<li><p><strong>suggestion</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Suggested fix or action</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ConfigurationError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ConfigurationError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#ConfigurationError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ConfigurationError" title="Link to this definition"></a></dt>
+<dd><p>Raised when there are issues with SciTeX configuration.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ConfigFileNotFoundError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ConfigFileNotFoundError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#ConfigFileNotFoundError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ConfigFileNotFoundError" title="Link to this definition"></a></dt>
+<dd><p>Raised when a required configuration file is not found.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ConfigKeyError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ConfigKeyError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">key</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">available_keys</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#ConfigKeyError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ConfigKeyError" title="Link to this definition"></a></dt>
+<dd><p>Raised when a required configuration key is missing.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.IOError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">IOError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#IOError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.IOError" title="Link to this definition"></a></dt>
+<dd><p>Base class for input/output related errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.FileFormatError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">FileFormatError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">expected_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">actual_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#FileFormatError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.FileFormatError" title="Link to this definition"></a></dt>
+<dd><p>Raised when file format is not supported or incorrect.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SaveError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SaveError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#SaveError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SaveError" title="Link to this definition"></a></dt>
+<dd><p>Raised when saving data fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.LoadError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">LoadError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#LoadError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.LoadError" title="Link to this definition"></a></dt>
+<dd><p>Raised when loading data fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ScholarError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ScholarError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#ScholarError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ScholarError" title="Link to this definition"></a></dt>
+<dd><p>Base class for scholar module errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.SearchError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">SearchError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">query</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">source</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#SearchError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.SearchError" title="Link to this definition"></a></dt>
+<dd><p>Raised when paper search fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.EnrichmentError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">EnrichmentError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">paper_title</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#EnrichmentError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.EnrichmentError" title="Link to this definition"></a></dt>
+<dd><p>Raised when paper enrichment fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PDFDownloadError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PDFDownloadError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">url</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#PDFDownloadError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PDFDownloadError" title="Link to this definition"></a></dt>
+<dd><p>Raised when PDF download fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.DOIResolutionError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">DOIResolutionError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">doi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#DOIResolutionError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.DOIResolutionError" title="Link to this definition"></a></dt>
+<dd><p>Raised when DOI resolution fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PDFExtractionError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PDFExtractionError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#PDFExtractionError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PDFExtractionError" title="Link to this definition"></a></dt>
+<dd><p>Raised when PDF text extraction fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.BibTeXEnrichmentError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">BibTeXEnrichmentError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">bibtex_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#BibTeXEnrichmentError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.BibTeXEnrichmentError" title="Link to this definition"></a></dt>
+<dd><p>Raised when BibTeX enrichment fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.TranslatorError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">TranslatorError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">translator_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#TranslatorError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.TranslatorError" title="Link to this definition"></a></dt>
+<dd><p>Raised when Zotero translator operations fail.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.AuthenticationError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">AuthenticationError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">provider</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#AuthenticationError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.AuthenticationError" title="Link to this definition"></a></dt>
+<dd><p>Raised when authentication fails.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PlottingError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PlottingError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#PlottingError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PlottingError" title="Link to this definition"></a></dt>
+<dd><p>Base class for plotting-related errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.FigureNotFoundError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">FigureNotFoundError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fig_id</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#FigureNotFoundError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.FigureNotFoundError" title="Link to this definition"></a></dt>
+<dd><p>Raised when attempting to operate on a non-existent figure.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.AxisError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">AxisError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">axis_info</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#AxisError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.AxisError" title="Link to this definition"></a></dt>
+<dd><p>Raised when there are issues with plot axes.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.DataError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">DataError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#DataError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.DataError" title="Link to this definition"></a></dt>
+<dd><p>Base class for data processing errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ShapeError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ShapeError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">expected_shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">actual_shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">operation</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#ShapeError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ShapeError" title="Link to this definition"></a></dt>
+<dd><p>Raised when data shapes are incompatible.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.DTypeError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">DTypeError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">expected_dtype</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">actual_dtype</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">operation</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#DTypeError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.DTypeError" title="Link to this definition"></a></dt>
+<dd><p>Raised when data types are incompatible.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PathError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PathError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#PathError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PathError" title="Link to this definition"></a></dt>
+<dd><p>Base class for path-related errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.InvalidPathError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">InvalidPathError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#InvalidPathError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.InvalidPathError" title="Link to this definition"></a></dt>
+<dd><p>Raised when a path is invalid or doesn’t follow SciTeX conventions.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.PathNotFoundError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">PathNotFoundError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#PathNotFoundError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.PathNotFoundError" title="Link to this definition"></a></dt>
+<dd><p>Raised when a required path doesn’t exist.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.TemplateError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">TemplateError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#TemplateError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.TemplateError" title="Link to this definition"></a></dt>
+<dd><p>Base class for template-related errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.TemplateViolationError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">TemplateViolationError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">violation</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#TemplateViolationError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.TemplateViolationError" title="Link to this definition"></a></dt>
+<dd><p>Raised when SciTeX template is not followed.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.NNError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">NNError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#NNError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.NNError" title="Link to this definition"></a></dt>
+<dd><p>Base class for neural network module errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.ModelError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">ModelError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">model_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#ModelError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.ModelError" title="Link to this definition"></a></dt>
+<dd><p>Raised when there are issues with neural network models.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.StatsError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">StatsError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">suggestion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#StatsError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.StatsError" title="Link to this definition"></a></dt>
+<dd><p>Base class for statistics module errors.</p>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.logging.TestError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">TestError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">test_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reason</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#TestError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.TestError" title="Link to this definition"></a></dt>
+<dd><p>Raised when statistical tests fail.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.check_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">check_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#check_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.check_path" title="Link to this definition"></a></dt>
+<dd><p>Validate a path according to SciTeX conventions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.check_file_exists">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">check_file_exists</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filepath</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#check_file_exists"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.check_file_exists" title="Link to this definition"></a></dt>
+<dd><p>Check if a file exists.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.logging.check_shape_compatibility">
+<span class="sig-prename descclassname"><span class="pre">scitex.logging.</span></span><span class="sig-name descname"><span class="pre">check_shape_compatibility</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">shape1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shape2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">operation</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_logging/_errors.html#check_shape_compatibility"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.logging.check_shape_compatibility" title="Link to this definition"></a></dt>
+<dd><p>Check if two shapes are compatible for an operation.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/media.html b/src/scitex/_sphinx_html/source/api/media.html
new file mode 100644
index 000000000..ea32ec3d4
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/media.html
@@ -0,0 +1,686 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>media Module (stx.media) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/media.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.media">
+<span id="media-module-stx-media"></span><h1>media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)<a class="headerlink" href="#module-scitex.media" title="Link to this heading"></a></h1>
+<p>scitex_etc.media — Media handling (detection, rendering, display).</p>
+<dl>
+<dt>Submodules:</dt><dd><dl class="simple">
+<dt>render — Detect, classify, and format media for various targets</dt><dd><p>(chat pane, terminal overlay, markdown embed).</p>
+</dd>
+</dl>
+</dd>
+<dt>Usage:</dt><dd><p>from scitex_etc.media import render</p>
+<p>refs = render.detect(text, root_path=”/home/user/proj”)
+render.show(“figure.png”, target=”terminal”)</p>
+</dd>
+</dl>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/module.html b/src/scitex/_sphinx_html/source/api/module.html
new file mode 100644
index 000000000..a335a1579
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/module.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>module Module (stx.module) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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diff --git a/src/scitex/_sphinx_html/source/api/msword.html b/src/scitex/_sphinx_html/source/api/msword.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/msword.html
@@ -0,0 +1,1798 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>msword Module (stx.msword) &mdash; SciTeX v0.0.0</title>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
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+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/msword.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.msword">
+<span id="msword-module-stx-msword"></span><h1>msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)<a class="headerlink" href="#module-scitex.msword" title="Link to this heading"></a></h1>
+<p>MS Word (DOCX) import/export utilities for SciTeX.</p>
+<p>This module provides high-level functions to convert between
+MS Word .docx files and SciTeX’s internal writer document model.</p>
+<section id="strategy">
+<h2>Strategy:<a class="headerlink" href="#strategy" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p>Word users write text only (paragraphs, minimal formatting)</p></li>
+<li><p>SciTeX handles: figures, tables, references, LaTeX generation</p></li>
+<li><p>SciTeX JSON is the “source of truth”, Word is just a view/edit layer</p></li>
+</ul>
+</section>
+<section id="typical-usage">
+<h2>Typical usage:<a class="headerlink" href="#typical-usage" title="Link to this heading"></a></h2>
+<blockquote>
+<div><p>from scitex_msword import load_docx, save_docx, list_profiles</p>
+<p># Import from Word
+doc = load_docx(“input.docx”, profile=”generic”)</p>
+<p># Manipulate via scitex.writer…
+# doc.normalize()</p>
+<p># Export to Word (different journal template)
+save_docx(doc, “output.docx”, profile=”mdpi-ijerph”)</p>
+</div></blockquote>
+</section>
+<section id="available-profiles">
+<h2>Available profiles:<a class="headerlink" href="#available-profiles" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p>generic: Standard Word with Heading 1/2/3</p></li>
+<li><p>mdpi-ijerph: MDPI IJERPH journal template</p></li>
+<li><p>resna-2025: RESNA 2025 scientific paper template</p></li>
+<li><p>iop-double-anonymous: IOP double-anonymous template</p></li>
+</ul>
+</section>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.load_docx">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">load_docx</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">profile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extract_images</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword.html#load_docx"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.load_docx" title="Link to this definition"></a></dt>
+<dd><p>Load a DOCX file and convert it into a SciTeX writer document.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to the .docx file.</p></li>
+<li><p><strong>profile</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Optional profile name that specifies how to interpret Word styles
+(e.g., “mdpi-ijerph”, “resna-2025”). If None, “generic” is used.</p></li>
+<li><p><strong>extract_images</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, extract embedded images and store references.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>A SciTeX writer document structure containing:
+- blocks: List of document blocks (headings, paragraphs, captions, etc.)
+- metadata: Profile and source file information
+- images: Extracted image references (if extract_images=True)
+- references: Parsed reference entries</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword</span><span class="w"> </span><span class="kn">import</span> <span class="n">load_docx</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">doc</span> <span class="o">=</span> <span class="n">load_docx</span><span class="p">(</span><span class="s2">&quot;manuscript.docx&quot;</span><span class="p">,</span> <span class="n">profile</span><span class="o">=</span><span class="s2">&quot;mdpi-ijerph&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">doc</span><span class="p">[</span><span class="s2">&quot;metadata&quot;</span><span class="p">][</span><span class="s2">&quot;profile&quot;</span><span class="p">])</span>
+<span class="go">&#39;mdpi-ijerph&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.save_docx">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">save_docx</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">writer_doc</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">profile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword.html#save_docx"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.save_docx" title="Link to this definition"></a></dt>
+<dd><p>Save a SciTeX writer document as a DOCX file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>writer_doc</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>] | <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – SciTeX writer document instance to export.</p></li>
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Output path for the .docx file.</p></li>
+<li><p><strong>profile</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Optional profile name that controls how sections, headings,
+figures, tables and references are mapped to Word styles.
+If None, “generic” is used.</p></li>
+<li><p><strong>overwrite</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If False and the file already exists, raises FileExistsError.</p></li>
+<li><p><strong>template_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Optional path to a Word template (.dotx/.docx) to use as base.
+This allows using journal-specific formatting.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The path to the written .docx file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword</span><span class="w"> </span><span class="kn">import</span> <span class="n">save_docx</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">save_docx</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="s2">&quot;submission_resna_2025.docx&quot;</span><span class="p">,</span> <span class="n">profile</span><span class="o">=</span><span class="s2">&quot;resna-2025&quot;</span><span class="p">)</span>
+<span class="go">PosixPath(&#39;submission_resna_2025.docx&#39;)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.convert_docx_to_tex">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">convert_docx_to_tex</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">profile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">image_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">link_images</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">link_mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'by-number'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">normalize_headings</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">validate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword.html#convert_docx_to_tex"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.convert_docx_to_tex" title="Link to this definition"></a></dt>
+<dd><p>Convert a DOCX file directly to LaTeX.</p>
+<p>This is a convenience function that:
+1. Loads the DOCX file into SciTeX intermediate format
+2. (Optionally) normalizes headings
+3. (Optionally) links figure captions to images
+4. (Optionally) validates the document and adds warnings
+5. Exports to LaTeX (including figures via image_dir)</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>input_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to the input .docx file.</p></li>
+<li><p><strong>output_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path for the output .tex file.</p></li>
+<li><p><strong>profile</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Word profile for interpreting styles
+(e.g., “resna-2025”, “iop-double-anonymous”).</p></li>
+<li><p><strong>image_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Directory where extracted figure image files will be saved.
+If None, the LaTeX exporter will create “&lt;tex_stem&gt;_figures”
+next to <cite>output_path</cite>.</p></li>
+<li><p><strong>link_images</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to link figure captions to extracted images so that
+LaTeX can generate includegraphics inside figure environments.</p></li>
+<li><p><strong>link_mode</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – <p>Strategy for linking captions to images:
+- “by-number”: Figure 1 -&gt; first image, Figure 2 -&gt; second image…
+- “by-proximity”: assign images in document order, useful when</p>
+<blockquote>
+<div><p>figure numbers and image order don’t match.</p>
+</div></blockquote>
+</p></li>
+<li><p><strong>normalize_headings</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, apply common heading normalizations
+(e.g., “intro” -&gt; “Introduction”).</p></li>
+<li><p><strong>validate</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, run basic structural checks and populate
+doc[“warnings”] with any issues.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The path to the written .tex file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword</span><span class="w"> </span><span class="kn">import</span> <span class="n">convert_docx_to_tex</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">convert_docx_to_tex</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="s2">&quot;RESNA 2025 Scientific Paper Template.docx&quot;</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="s2">&quot;manuscript.tex&quot;</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">profile</span><span class="o">=</span><span class="s2">&quot;resna-2025&quot;</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">image_dir</span><span class="o">=</span><span class="s2">&quot;figures&quot;</span><span class="p">,</span>
+<span class="gp">... </span><span class="p">)</span>
+<span class="go">PosixPath(&#39;manuscript.tex&#39;)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.list_profiles">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">list_profiles</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/profiles.html#list_profiles"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.list_profiles" title="Link to this definition"></a></dt>
+<dd><p>List available MS Word profiles.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>List of profile names (e.g., [“generic”, “mdpi-ijerph”, …]).</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword</span><span class="w"> </span><span class="kn">import</span> <span class="n">list_profiles</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">profiles</span> <span class="o">=</span> <span class="n">list_profiles</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="s2">&quot;generic&quot;</span> <span class="ow">in</span> <span class="n">profiles</span>
+<span class="go">True</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.get_profile">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">get_profile</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/profiles.html#get_profile"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.get_profile" title="Link to this definition"></a></dt>
+<dd><p>Get a Word profile by name.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span>) – Profile name. If None, “generic” is used.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The requested profile.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.msword.BaseWordProfile" title="scitex_msword.profiles.BaseWordProfile"><code class="xref py py-class docutils literal notranslate"><span class="pre">BaseWordProfile</span></code></a></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#KeyError" title="(in Python v3.14)"><strong>KeyError</strong></a> – If the profile name is unknown.</p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_profile</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">profile</span> <span class="o">=</span> <span class="n">get_profile</span><span class="p">(</span><span class="s2">&quot;mdpi-ijerph&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">profile</span><span class="o">.</span><span class="n">columns</span>
+<span class="go">1</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.register_profile">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">register_profile</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">profile</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/profiles.html#register_profile"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.register_profile" title="Link to this definition"></a></dt>
+<dd><p>Register a custom Word profile.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>profile</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.msword.BaseWordProfile" title="scitex_msword.profiles.BaseWordProfile"><code class="xref py py-class docutils literal notranslate"><span class="pre">BaseWordProfile</span></code></a></span>) – The profile to register.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword</span><span class="w"> </span><span class="kn">import</span> <span class="n">BaseWordProfile</span><span class="p">,</span> <span class="n">register_profile</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">custom</span> <span class="o">=</span> <span class="n">BaseWordProfile</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="n">name</span><span class="o">=</span><span class="s2">&quot;my-journal&quot;</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">description</span><span class="o">=</span><span class="s2">&quot;My custom journal template&quot;</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">heading_styles</span><span class="o">=</span><span class="p">{</span><span class="mi">1</span><span class="p">:</span> <span class="s2">&quot;Title&quot;</span><span class="p">,</span> <span class="mi">2</span><span class="p">:</span> <span class="s2">&quot;Subtitle&quot;</span><span class="p">},</span>
+<span class="gp">... </span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">register_profile</span><span class="p">(</span><span class="n">custom</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="s2">&quot;my-journal&quot;</span> <span class="ow">in</span> <span class="n">list_profiles</span><span class="p">()</span>
+<span class="go">True</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">BaseWordProfile</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">heading_styles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">caption_style</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Caption'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">normal_style</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Normal'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference_section_titles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">figure_caption_prefixes</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">table_caption_prefixes</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">list_styles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">equation_style</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">columns</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">double_anonymous</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">body_font</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">body_font_size_pt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">heading_background_hex</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">line_spacing</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">post_import_hooks</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pre_export_hooks</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/profiles.html#BaseWordProfile"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.BaseWordProfile" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Base configuration for mapping between DOCX and SciTeX writer documents.</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.name">
+<span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.name" title="Link to this definition"></a></dt>
+<dd><p>Profile identifier (e.g., “mdpi-ijerph”).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.description">
+<span class="sig-name descname"><span class="pre">description</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.description" title="Link to this definition"></a></dt>
+<dd><p>Human-readable description.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.heading_styles">
+<span class="sig-name descname"><span class="pre">heading_styles</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.heading_styles" title="Link to this definition"></a></dt>
+<dd><p>Mapping from section depth (1, 2, 3…) to Word style names
+(e.g., {1: “Heading 1”, 2: “Heading 2”}).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)">dict</a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)">int</a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.caption_style">
+<span class="sig-name descname"><span class="pre">caption_style</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.caption_style" title="Link to this definition"></a></dt>
+<dd><p>Word style name used for figure/table captions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.normal_style">
+<span class="sig-name descname"><span class="pre">normal_style</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.normal_style" title="Link to this definition"></a></dt>
+<dd><p>Default paragraph style.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.reference_section_titles">
+<span class="sig-name descname"><span class="pre">reference_section_titles</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.reference_section_titles" title="Link to this definition"></a></dt>
+<dd><p>Titles that indicate the start of the reference section.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.figure_caption_prefixes">
+<span class="sig-name descname"><span class="pre">figure_caption_prefixes</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.figure_caption_prefixes" title="Link to this definition"></a></dt>
+<dd><p>Prefixes that identify figure captions (e.g., [“Figure”, “Fig.”]).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.table_caption_prefixes">
+<span class="sig-name descname"><span class="pre">table_caption_prefixes</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.table_caption_prefixes" title="Link to this definition"></a></dt>
+<dd><p>Prefixes that identify table captions (e.g., [“Table”]).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.list_styles">
+<span class="sig-name descname"><span class="pre">list_styles</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.list_styles" title="Link to this definition"></a></dt>
+<dd><p>Mapping for list styles (bullet, numbered).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)">dict</a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a>]</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.equation_style">
+<span class="sig-name descname"><span class="pre">equation_style</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.equation_style" title="Link to this definition"></a></dt>
+<dd><p>Style name for equations, if any.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a> | None</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.columns">
+<span class="sig-name descname"><span class="pre">columns</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.columns" title="Link to this definition"></a></dt>
+<dd><p>Number of columns in the layout (1 or 2).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)">int</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.double_anonymous">
+<span class="sig-name descname"><span class="pre">double_anonymous</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.double_anonymous" title="Link to this definition"></a></dt>
+<dd><p>Whether this profile requires double-anonymous formatting.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)">bool</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id0">
+<span class="sig-name descname"><span class="pre">name</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><a class="headerlink" href="#id0" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id1">
+<span class="sig-name descname"><span class="pre">description</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><a class="headerlink" href="#id1" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id2">
+<span class="sig-name descname"><span class="pre">heading_styles</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><span class="pre">Dict</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><span class="pre">int</span></a><span class="p"><span class="pre">,</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#id2" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id3">
+<span class="sig-name descname"><span class="pre">caption_style</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">'Caption'</span></span><a class="headerlink" href="#id3" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id4">
+<span class="sig-name descname"><span class="pre">normal_style</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">'Normal'</span></span><a class="headerlink" href="#id4" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id5">
+<span class="sig-name descname"><span class="pre">reference_section_titles</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#id5" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id6">
+<span class="sig-name descname"><span class="pre">figure_caption_prefixes</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#id6" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id7">
+<span class="sig-name descname"><span class="pre">table_caption_prefixes</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#id7" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id8">
+<span class="sig-name descname"><span class="pre">list_styles</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><span class="pre">Dict</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">,</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#id8" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id9">
+<span class="sig-name descname"><span class="pre">equation_style</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#id9" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id10">
+<span class="sig-name descname"><span class="pre">columns</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><span class="pre">int</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">1</span></span><a class="headerlink" href="#id10" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id11">
+<span class="sig-name descname"><span class="pre">double_anonymous</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><span class="pre">bool</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">False</span></span><a class="headerlink" href="#id11" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.body_font">
+<span class="sig-name descname"><span class="pre">body_font</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.body_font" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.body_font_size_pt">
+<span class="sig-name descname"><span class="pre">body_font_size_pt</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><span class="pre">float</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.body_font_size_pt" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.heading_background_hex">
+<span class="sig-name descname"><span class="pre">heading_background_hex</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.heading_background_hex" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.line_spacing">
+<span class="sig-name descname"><span class="pre">line_spacing</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><span class="pre">float</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.line_spacing" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.post_import_hooks">
+<span class="sig-name descname"><span class="pre">post_import_hooks</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><span class="pre">Callable</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.post_import_hooks" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.msword.BaseWordProfile.pre_export_hooks">
+<span class="sig-name descname"><span class="pre">pre_export_hooks</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><span class="pre">Callable</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#scitex.msword.BaseWordProfile.pre_export_hooks" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.msword.WordReader">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">WordReader</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">profile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extract_images</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/reader.html#WordReader"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.WordReader" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Read a DOCX file and convert it into a SciTeX writer document.</p>
+<p>This reader focuses on:
+- Sections (via heading styles)
+- Plain paragraphs
+- Figure/table captions (via caption style)
+- Embedded images extraction
+- References section boundary detection
+- Basic formatting (bold, italic)</p>
+<p>The output is a structured intermediate representation that can be
+easily fed into <cite>scitex.writer</cite> or exported to LaTeX/other formats.</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.msword.WordReader.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">profile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extract_images</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/reader.html#WordReader.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.WordReader.__init__" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>profile</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.msword.BaseWordProfile" title="scitex_msword.profiles.BaseWordProfile"><code class="xref py py-class docutils literal notranslate"><span class="pre">BaseWordProfile</span></code></a></span>) – Mapping between Word styles and SciTeX writer semantics.</p></li>
+<li><p><strong>extract_images</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to extract embedded images from the document.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.msword.WordReader.read">
+<span class="sig-name descname"><span class="pre">read</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/reader.html#WordReader.read"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.WordReader.read" title="Link to this definition"></a></dt>
+<dd><p>Read a DOCX file and return a SciTeX writer document.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to the DOCX file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>SciTeX writer document structure with keys:
+- blocks: List of document blocks
+- metadata: Profile and source information
+- images: Extracted image data (if extract_images=True)
+- references: Parsed reference entries
+- warnings: List of conversion warnings</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.msword.WordWriter">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">WordWriter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">profile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/writer.html#WordWriter"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.WordWriter" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Export a SciTeX writer document to a DOCX file.</p>
+<p>This writer handles:
+- Section headings with proper styles
+- Paragraphs with formatting
+- Figure and table captions
+- References section
+- Image embedding
+- Journal-specific template application</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.msword.WordWriter.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">profile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/writer.html#WordWriter.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.WordWriter.__init__" title="Link to this definition"></a></dt>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>profile</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.msword.BaseWordProfile" title="scitex_msword.profiles.BaseWordProfile"><code class="xref py py-class docutils literal notranslate"><span class="pre">BaseWordProfile</span></code></a></span>) – Mapping from writer structures to Word styles.</p></li>
+<li><p><strong>template_path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Optional path to a Word template (.dotx/.docx) to use as base.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.msword.WordWriter.write">
+<span class="sig-name descname"><span class="pre">write</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">writer_doc</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/writer.html#WordWriter.write"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.WordWriter.write" title="Link to this definition"></a></dt>
+<dd><p>Write a SciTeX writer document to a DOCX file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>writer_doc</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span>) – Writer document or intermediate structure.</p></li>
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Output path for the DOCX file.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.link_captions_to_images">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">link_captions_to_images</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">doc</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/utils.html#link_captions_to_images"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.link_captions_to_images" title="Link to this definition"></a></dt>
+<dd><p>Link figure captions to images by matching order.</p>
+<p>This function pairs figure captions with images based on their
+sequential order in the document. Each figure caption is assigned
+an <cite>image_hash</cite> that corresponds to the image at the same position.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>doc</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span>) – SciTeX writer document with ‘blocks’ and ‘images’ keys.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same document with image_hash added to figure captions.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword</span><span class="w"> </span><span class="kn">import</span> <span class="n">load_docx</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword.utils</span><span class="w"> </span><span class="kn">import</span> <span class="n">link_captions_to_images</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">doc</span> <span class="o">=</span> <span class="n">load_docx</span><span class="p">(</span><span class="s2">&quot;manuscript.docx&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">doc</span> <span class="o">=</span> <span class="n">link_captions_to_images</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Now captions have image_hash for LaTeX export</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.link_captions_to_images_by_proximity">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">link_captions_to_images_by_proximity</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">doc</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/utils.html#link_captions_to_images_by_proximity"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.link_captions_to_images_by_proximity" title="Link to this definition"></a></dt>
+<dd><p>Link figure captions to images by document proximity.</p>
+<p>This function uses the image blocks (type=”image”) that are inserted
+at their actual positions in the document body. It finds the nearest
+unlinked image block to each figure caption.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>doc</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span>) – SciTeX writer document.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Document with image_hash added to captions.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.normalize_section_headings">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">normalize_section_headings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">doc</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/utils.html#normalize_section_headings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.normalize_section_headings" title="Link to this definition"></a></dt>
+<dd><p>Normalize section headings for consistency.</p>
+<p>Converts common section titles to standard academic format:
+- “intro” -&gt; “Introduction”
+- “method” -&gt; “Methods”
+- etc.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>doc</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span>) – SciTeX writer document.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Document with normalized headings.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.validate_document">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">validate_document</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">doc</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/utils.html#validate_document"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.validate_document" title="Link to this definition"></a></dt>
+<dd><p>Validate document structure and add warnings.</p>
+<p>Checks for common issues:
+- Missing required sections
+- Unmatched caption numbers
+- Empty references section
+- Duplicate figure numbers</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>doc</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span>) – SciTeX writer document.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Document with warnings added.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.create_post_import_hook">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">create_post_import_hook</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">functions</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/utils.html#create_post_import_hook"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.create_post_import_hook" title="Link to this definition"></a></dt>
+<dd><p>Create a composite post_import_hook from multiple functions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>*functions</strong> (<em>callable</em>) – Functions to apply in sequence.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>A single hook that applies all functions.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p>callable</p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.msword.utils</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
+<span class="gp">... </span>    <span class="n">link_captions_to_images</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">normalize_section_headings</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">create_post_import_hook</span><span class="p">,</span>
+<span class="gp">... </span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hook</span> <span class="o">=</span> <span class="n">create_post_import_hook</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="n">link_captions_to_images</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">normalize_section_headings</span><span class="p">,</span>
+<span class="gp">... </span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Use with custom profile</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">profile</span><span class="o">.</span><span class="n">post_import_hooks</span> <span class="o">=</span> <span class="p">[</span><span class="n">hook</span><span class="p">]</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.diff_docx">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">diff_docx</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">a</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">b</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">include_run_diff</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/diff.html#diff_docx"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.diff_docx" title="Link to this definition"></a></dt>
+<dd><p>Compute paragraph-level diff between two DOCX documents.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>a</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code>]</span>) – Inputs to compare. May be paths or already-loaded Documents.</p></li>
+<li><p><strong>b</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code>]</span>) – Inputs to compare. May be paths or already-loaded Documents.</p></li>
+<li><p><strong>include_run_diff</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, <code class="docutils literal notranslate"><span class="pre">modify</span></code> operations include a <code class="docutils literal notranslate"><span class="pre">runs_changed</span></code> field
+listing the run-level formatting deltas.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><p>Each entry is one of:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;equal&quot;</span><span class="p">,</span>  <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">}</span>
+<span class="p">{</span><span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;insert&quot;</span><span class="p">,</span> <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span> <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">}</span>
+<span class="p">{</span><span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;delete&quot;</span><span class="p">,</span> <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>  <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">}</span>
+<span class="p">{</span><span class="s2">&quot;op&quot;</span><span class="p">:</span> <span class="s2">&quot;modify&quot;</span><span class="p">,</span> <span class="s2">&quot;index&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="s2">&quot;text_a&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>  <span class="s2">&quot;text_b&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+ <span class="s2">&quot;runs_changed&quot;</span><span class="p">:</span> <span class="p">[</span><span class="o">...</span><span class="p">]}</span>
+</pre></div>
+</div>
+<p><code class="docutils literal notranslate"><span class="pre">index</span></code> refers to the paragraph index in document <code class="docutils literal notranslate"><span class="pre">b</span></code> for
+<code class="docutils literal notranslate"><span class="pre">equal</span></code>/<code class="docutils literal notranslate"><span class="pre">insert</span></code>/<code class="docutils literal notranslate"><span class="pre">modify</span></code> operations, and to the paragraph
+index in document <code class="docutils literal notranslate"><span class="pre">a</span></code> for <code class="docutils literal notranslate"><span class="pre">delete</span></code> operations.</p>
+</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_msword.diff</span><span class="w"> </span><span class="kn">import</span> <span class="n">diff_docx</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">ops</span> <span class="o">=</span> <span class="n">diff_docx</span><span class="p">(</span><span class="s2">&quot;v15.docx&quot;</span><span class="p">,</span> <span class="s2">&quot;v16.docx&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">changes</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ops</span> <span class="k">if</span> <span class="n">o</span><span class="p">[</span><span class="s2">&quot;op&quot;</span><span class="p">]</span> <span class="o">!=</span> <span class="s2">&quot;equal&quot;</span><span class="p">]</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.summarize_diff">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">summarize_diff</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ops</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/diff.html#summarize_diff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.summarize_diff" title="Link to this definition"></a></dt>
+<dd><p>Convenience helper: count operations by type.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>ops</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]</span>) – Output of <a class="reference internal" href="#scitex.msword.diff_docx" title="scitex.msword.diff_docx"><code class="xref py py-func docutils literal notranslate"><span class="pre">diff_docx()</span></code></a>.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Mapping <code class="docutils literal notranslate"><span class="pre">{&quot;equal&quot;:</span> <span class="pre">n,</span> <span class="pre">&quot;insert&quot;:</span> <span class="pre">n,</span> <span class="pre">&quot;delete&quot;:</span> <span class="pre">n,</span> <span class="pre">&quot;modify&quot;:</span> <span class="pre">n}</span></code>.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.mark_additions">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">mark_additions</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">runs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'turquoise'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/highlights.html#mark_additions"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.mark_additions" title="Link to this definition"></a></dt>
+<dd><p>Highlight the runs that the operator (or agent) <em>added</em> to the document.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The Document to mutate in place.</p></li>
+<li><p><strong>runs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Iterable" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Iterable</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]]</span>) – Targets to highlight. Out-of-range indices are skipped silently.</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Color name. See module docstring for the supported palette.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same Document object, mutated.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_msword.highlights</span><span class="w"> </span><span class="kn">import</span> <span class="n">mark_additions</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">doc</span> <span class="o">=</span> <span class="n">mark_additions</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="p">[(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span> <span class="p">(</span><span class="mi">5</span><span class="p">,</span> <span class="mi">2</span><span class="p">)])</span>  <span class="c1"># default turquoise</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.mark_modifications">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">mark_modifications</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">runs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'magenta'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/highlights.html#mark_modifications"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.mark_modifications" title="Link to this definition"></a></dt>
+<dd><p>Highlight the runs that the operator (or agent) <em>modified</em> in the document.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The Document to mutate in place.</p></li>
+<li><p><strong>runs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Iterable" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Iterable</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]]</span>) – Targets to highlight. Out-of-range indices are skipped silently.</p></li>
+<li><p><strong>color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Color name. See module docstring for the supported palette.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same Document object, mutated.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_msword.highlights</span><span class="w"> </span><span class="kn">import</span> <span class="n">mark_modifications</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">doc</span> <span class="o">=</span> <span class="n">mark_modifications</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="p">[(</span><span class="mi">7</span><span class="p">,</span> <span class="mi">1</span><span class="p">)])</span>  <span class="c1"># default magenta</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.extract_highlights">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">extract_highlights</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">by_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/highlights.html#extract_highlights"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.extract_highlights" title="Link to this definition"></a></dt>
+<dd><p>Extract highlighted runs from a document, grouped by color.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The document to scan.</p></li>
+<li><p><strong>by_color</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True (default), return <code class="docutils literal notranslate"><span class="pre">{color_name:</span> <span class="pre">[run_info,</span> <span class="pre">...]}</span></code>.
+If False, return a single <code class="docutils literal notranslate"><span class="pre">{&quot;all&quot;:</span> <span class="pre">[run_info,</span> <span class="pre">...]}</span></code> bucket
+with each entry’s <code class="docutils literal notranslate"><span class="pre">color</span></code> field populated.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><p>Mapping from color name to a list of run info dicts of shape:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="s2">&quot;paragraph&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="s2">&quot;run&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="s2">&quot;color&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">}</span>
+</pre></div>
+</div>
+</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_msword.highlights</span><span class="w"> </span><span class="kn">import</span> <span class="n">extract_highlights</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">by_color</span> <span class="o">=</span> <span class="n">extract_highlights</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">by_color</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;turquoise&quot;</span><span class="p">,</span> <span class="p">[])</span>
+<span class="go">[{&#39;paragraph&#39;: 3, &#39;run&#39;: 0, &#39;text&#39;: &#39;...&#39;, &#39;color&#39;: &#39;turquoise&#39;}]</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.clear_highlights">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">clear_highlights</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">colors</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/highlights.html#clear_highlights"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.clear_highlights" title="Link to this definition"></a></dt>
+<dd><p>Remove highlights from all runs (optionally only for the listed colors).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – Document to mutate in place.</p></li>
+<li><p><strong>colors</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Iterable" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Iterable</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span>) – If provided, only runs with one of these highlight colors are
+cleared. If <code class="docutils literal notranslate"><span class="pre">None</span></code> (default), every highlighted run is cleared.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same Document object, mutated.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.preserve_bold_tokens">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">preserve_bold_tokens</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tokens</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">font_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'MS</span> <span class="pre">Gothic'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">case_sensitive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/bold.html#preserve_bold_tokens"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.preserve_bold_tokens" title="Link to this definition"></a></dt>
+<dd><p>Walk every paragraph in <code class="docutils literal notranslate"><span class="pre">document</span></code> and bold-emphasize each token hit.</p>
+<p>Wherever a token appears inside paragraph text, the paragraph’s runs
+are split so that the token sits in its own run with <code class="docutils literal notranslate"><span class="pre">bold=True</span></code>
+and <code class="docutils literal notranslate"><span class="pre">font.name</span> <span class="pre">=</span> <span class="pre">font_name</span></code> (Latin + East-Asian + complex script
+slots are all set so Japanese text picks up MS Gothic in Word).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The Document to mutate in place.</p></li>
+<li><p><strong>tokens</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Sequence" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Sequence</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Strings to emphasize. Empty strings are ignored. Longer tokens
+take precedence on overlapping matches.</p></li>
+<li><p><strong>font_name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Font face applied to matched tokens.</p></li>
+<li><p><strong>case_sensitive</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If False, matching is case-insensitive.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same Document object, mutated.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span></p>
+</dd>
+</dl>
+<div class="admonition-notes admonition">
+<p class="admonition-title">Notes</p>
+<p>This implementation rewrites all runs of a paragraph when at least
+one token hits; paragraphs without hits are left untouched. The
+original surrounding format (italic, underline, size, highlight) is
+captured from the <em>first</em> run before rebuilding — if you need
+finer-grained preservation, run <a class="reference internal" href="#scitex.msword.preserve_bold_tokens" title="scitex.msword.preserve_bold_tokens"><code class="xref py py-func docutils literal notranslate"><span class="pre">preserve_bold_tokens()</span></code></a> before
+other run-level edits.</p>
+</div>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_msword.bold</span><span class="w"> </span><span class="kn">import</span> <span class="n">preserve_bold_tokens</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">preserve_bold_tokens</span><span class="p">(</span><span class="n">doc</span><span class="p">,</span> <span class="n">tokens</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;BOOST&quot;</span><span class="p">,</span> <span class="s2">&quot;JST&quot;</span><span class="p">])</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.extract_comments">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">extract_comments</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/comments.html#extract_comments"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.extract_comments" title="Link to this definition"></a></dt>
+<dd><p>Extract Word comments from a .docx file or open Document.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code>]</span>) – Path to the .docx or an already-open Document.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><p>One entry per comment:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="nb">int</span> <span class="o">|</span> <span class="nb">str</span><span class="p">,</span>
+ <span class="s2">&quot;author&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+ <span class="s2">&quot;date&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>           <span class="c1"># ISO timestamp string, may be empty</span>
+ <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>           <span class="c1"># comment body</span>
+ <span class="s2">&quot;anchor_text&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>    <span class="c1"># text the comment is anchored to</span>
+ <span class="s2">&quot;paragraph_range&quot;</span><span class="p">:</span> <span class="p">[</span><span class="n">start</span><span class="p">,</span> <span class="n">end</span><span class="p">]}</span>
+</pre></div>
+</div>
+<p><code class="docutils literal notranslate"><span class="pre">anchor_text</span></code> and <code class="docutils literal notranslate"><span class="pre">paragraph_range</span></code> default to <code class="docutils literal notranslate"><span class="pre">&quot;&quot;</span></code> and
+<code class="docutils literal notranslate"><span class="pre">[None,</span> <span class="pre">None]</span></code> when no in-document anchor can be located.</p>
+</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_msword.comments</span><span class="w"> </span><span class="kn">import</span> <span class="n">extract_comments</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">comments</span> <span class="o">=</span> <span class="n">extract_comments</span><span class="p">(</span><span class="s2">&quot;boost-v16.docx&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="p">[</span><span class="n">c</span><span class="p">[</span><span class="s2">&quot;text&quot;</span><span class="p">]</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">comments</span><span class="p">]</span>
+<span class="go">[&#39;Please rephrase this&#39;, &#39;REPLACE: Use the new wording&#39;]</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.apply_comments_as_edits">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">apply_comments_as_edits</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">comments</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">grammar</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'replace'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/comments.html#apply_comments_as_edits"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.apply_comments_as_edits" title="Link to this definition"></a></dt>
+<dd><p>Apply comments to the document body using a narrow grammar.</p>
+<p>Only the <code class="docutils literal notranslate"><span class="pre">REPLACE:</span></code> grammar is currently supported, i.e. a comment
+whose body matches <code class="docutils literal notranslate"><span class="pre">r&quot;^\s*REPLACE\s*:\s*(.+?)\s*$&quot;</span></code> is interpreted
+as “replace this comment’s anchor text with the trailing payload”.
+Other comments are ignored.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The Document to mutate in place.</p></li>
+<li><p><strong>comments</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]]]</span>) – Pre-extracted comments (as returned by <a class="reference internal" href="#scitex.msword.extract_comments" title="scitex.msword.extract_comments"><code class="xref py py-func docutils literal notranslate"><span class="pre">extract_comments()</span></code></a>).
+If <code class="docutils literal notranslate"><span class="pre">None</span></code>, the comments are read from <code class="docutils literal notranslate"><span class="pre">document</span></code> directly.</p></li>
+<li><p><strong>grammar</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Reserved for future expansion. Currently only <code class="docutils literal notranslate"><span class="pre">&quot;replace&quot;</span></code>
+is recognised.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Summary: <code class="docutils literal notranslate"><span class="pre">{&quot;applied&quot;:</span> <span class="pre">int,</span> <span class="pre">&quot;skipped&quot;:</span> <span class="pre">int,</span> <span class="pre">&quot;details&quot;:</span> <span class="pre">[...]}</span></code>.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_msword.comments</span><span class="w"> </span><span class="kn">import</span> <span class="n">apply_comments_as_edits</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">summary</span> <span class="o">=</span> <span class="n">apply_comments_as_edits</span><span class="p">(</span><span class="n">doc</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">summary</span><span class="p">[</span><span class="s2">&quot;applied&quot;</span><span class="p">]</span>
+<span class="go">2</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.enable_track_changes">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">enable_track_changes</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">enabled</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/track_changes.html#enable_track_changes"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.enable_track_changes" title="Link to this definition"></a></dt>
+<dd><p>Toggle Word’s “Track Changes” switch on the document.</p>
+<p>Inserts <code class="docutils literal notranslate"><span class="pre">&lt;w:trackChanges/&gt;</span></code> into <code class="docutils literal notranslate"><span class="pre">word/settings.xml</span></code> when
+<code class="docutils literal notranslate"><span class="pre">enabled=True</span></code> (idempotent) or removes it when <code class="docutils literal notranslate"><span class="pre">enabled=False</span></code>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The Document to mutate in place.</p></li>
+<li><p><strong>enabled</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – <code class="docutils literal notranslate"><span class="pre">True</span></code> keeps a single <code class="docutils literal notranslate"><span class="pre">&lt;w:trackChanges/&gt;</span></code> element present;
+<code class="docutils literal notranslate"><span class="pre">False</span></code> removes any such elements.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same Document object (chainable).</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.is_track_changes_enabled">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">is_track_changes_enabled</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/track_changes.html#is_track_changes_enabled"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.is_track_changes_enabled" title="Link to this definition"></a></dt>
+<dd><p>Return True iff <code class="docutils literal notranslate"><span class="pre">&lt;w:trackChanges/&gt;</span></code> is present in settings.xml.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.wrap_as_tracked_insertion">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">wrap_as_tracked_insertion</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">paragraph</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">runs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">author</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'agent'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">date</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">w_id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/track_changes.html#wrap_as_tracked_insertion"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.wrap_as_tracked_insertion" title="Link to this definition"></a></dt>
+<dd><p>Wrap the given runs of <code class="docutils literal notranslate"><span class="pre">paragraph</span></code> in <code class="docutils literal notranslate"><span class="pre">&lt;w:ins&gt;</span></code> revision blocks.</p>
+<p>Word renders the wrapped content as “inserted by &lt;author&gt;” and
+surfaces it as an accept/reject-able revision.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>paragraph</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Paragraph</span></code></span>) – Paragraph that owns the runs to wrap.</p></li>
+<li><p><strong>runs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Sequence" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Sequence</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span>) – Runs to wrap, by Run object or by 0-based index.</p></li>
+<li><p><strong>author</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Recorded in <code class="docutils literal notranslate"><span class="pre">w:author</span></code>.</p></li>
+<li><p><strong>date</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – ISO-8601 string for <code class="docutils literal notranslate"><span class="pre">w:date</span></code>; defaults to <code class="docutils literal notranslate"><span class="pre">now(UTC)</span></code>.</p></li>
+<li><p><strong>w_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Explicit revision id; auto-assigned (max+1) when <code class="docutils literal notranslate"><span class="pre">None</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Newly created <code class="docutils literal notranslate"><span class="pre">&lt;w:ins&gt;</span></code> lxml elements.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.wrap_as_tracked_deletion">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">wrap_as_tracked_deletion</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">paragraph</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">runs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">author</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'agent'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">date</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">w_id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/track_changes.html#wrap_as_tracked_deletion"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.wrap_as_tracked_deletion" title="Link to this definition"></a></dt>
+<dd><p>Wrap the given runs of <code class="docutils literal notranslate"><span class="pre">paragraph</span></code> in <code class="docutils literal notranslate"><span class="pre">&lt;w:del&gt;</span></code> revision blocks.</p>
+<p>Each wrapped run’s <code class="docutils literal notranslate"><span class="pre">&lt;w:t&gt;</span></code> children are also retagged as
+<code class="docutils literal notranslate"><span class="pre">&lt;w:delText&gt;</span></code> so Word renders the deletion with strike-through.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>paragraph</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Paragraph</span></code></span>) – Paragraph that owns the runs to wrap.</p></li>
+<li><p><strong>runs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Sequence" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Sequence</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span>) – Runs to wrap, by Run object or by 0-based index.</p></li>
+<li><p><strong>author</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Recorded in <code class="docutils literal notranslate"><span class="pre">w:author</span></code>.</p></li>
+<li><p><strong>date</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – ISO-8601 string for <code class="docutils literal notranslate"><span class="pre">w:date</span></code>; defaults to <code class="docutils literal notranslate"><span class="pre">now(UTC)</span></code>.</p></li>
+<li><p><strong>w_id</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>]</span>) – Explicit revision id; auto-assigned (max+1) when <code class="docutils literal notranslate"><span class="pre">None</span></code>.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Newly created <code class="docutils literal notranslate"><span class="pre">&lt;w:del&gt;</span></code> lxml elements.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.extract_tracked_changes">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">extract_tracked_changes</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/track_changes.html#extract_tracked_changes"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.extract_tracked_changes" title="Link to this definition"></a></dt>
+<dd><p>Return every <code class="docutils literal notranslate"><span class="pre">&lt;w:ins&gt;</span></code> / <code class="docutils literal notranslate"><span class="pre">&lt;w:del&gt;</span></code> revision as a structured dict.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The Document to scan.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p><p>Each entry is shaped as:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;insert&quot;</span> <span class="o">|</span> <span class="s2">&quot;delete&quot;</span><span class="p">,</span>
+ <span class="s2">&quot;paragraph_idx&quot;</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
+ <span class="s2">&quot;author&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+ <span class="s2">&quot;date&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+ <span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
+ <span class="s2">&quot;text&quot;</span><span class="p">:</span> <span class="nb">str</span><span class="p">}</span>
+</pre></div>
+</div>
+</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.accept_all_tracked_changes">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">accept_all_tracked_changes</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/track_changes.html#accept_all_tracked_changes"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.accept_all_tracked_changes" title="Link to this definition"></a></dt>
+<dd><p>Accept all tracked changes — equivalent to Word’s “Accept All”.</p>
+<p><code class="docutils literal notranslate"><span class="pre">&lt;w:ins&gt;</span></code> wrappers are unwrapped (content remains); <code class="docutils literal notranslate"><span class="pre">&lt;w:del&gt;</span></code>
+wrappers and their contents are removed.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The Document to mutate in place.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same Document, mutated.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.msword.reject_all_tracked_changes">
+<span class="sig-prename descclassname"><span class="pre">scitex.msword.</span></span><span class="sig-name descname"><span class="pre">reject_all_tracked_changes</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">document</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_msword/track_changes.html#reject_all_tracked_changes"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.msword.reject_all_tracked_changes" title="Link to this definition"></a></dt>
+<dd><p>Reject all tracked changes — equivalent to Word’s “Reject All”.</p>
+<p><code class="docutils literal notranslate"><span class="pre">&lt;w:ins&gt;</span></code> wrappers and contents are removed; <code class="docutils literal notranslate"><span class="pre">&lt;w:del&gt;</span></code> wrappers
+are unwrapped and their <code class="docutils literal notranslate"><span class="pre">&lt;w:delText&gt;</span></code> children retagged back to
+<code class="docutils literal notranslate"><span class="pre">&lt;w:t&gt;</span></code> so the original text is restored.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>document</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span>) – The Document to mutate in place.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The same Document, mutated.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-class docutils literal notranslate"><span class="pre">Document</span></code></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/nn.html b/src/scitex/_sphinx_html/source/api/nn.html
new file mode 100644
index 000000000..9cfd2fe02
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/nn.html
@@ -0,0 +1,750 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>NN Module (stx.nn) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/nn.rst" class="fa fa-github"> Edit on GitHub</a>
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+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="nn-module-stx-nn">
+<h1>NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)<a class="headerlink" href="#nn-module-stx-nn" title="Link to this heading"></a></h1>
+<p>PyTorch neural network layers for signal processing and neuroscience
+applications.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">torch</span>
+
+<span class="c1"># Bandpass filtering as a differentiable layer</span>
+<span class="n">bpf</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">nn</span><span class="o">.</span><span class="n">BandPassFilter</span><span class="p">(</span>
+    <span class="n">bands</span><span class="o">=</span><span class="p">[[</span><span class="mi">4</span><span class="p">,</span> <span class="mi">8</span><span class="p">],</span> <span class="p">[</span><span class="mi">8</span><span class="p">,</span> <span class="mi">13</span><span class="p">],</span> <span class="p">[</span><span class="mi">13</span><span class="p">,</span> <span class="mi">30</span><span class="p">]],</span>  <span class="c1"># theta, alpha, beta</span>
+    <span class="n">fs</span><span class="o">=</span><span class="mi">256</span><span class="p">,</span> <span class="n">seq_len</span><span class="o">=</span><span class="mi">1024</span>
+<span class="p">)</span>
+<span class="n">filtered</span> <span class="o">=</span> <span class="n">bpf</span><span class="p">(</span><span class="n">signal</span><span class="p">)</span>  <span class="c1"># (batch, channels, 3, 1024)</span>
+
+<span class="c1"># Power spectral density</span>
+<span class="n">psd</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">nn</span><span class="o">.</span><span class="n">PSD</span><span class="p">(</span><span class="n">sample_rate</span><span class="o">=</span><span class="mi">256</span><span class="p">)</span>
+<span class="n">power</span><span class="p">,</span> <span class="n">freqs</span> <span class="o">=</span> <span class="n">psd</span><span class="p">(</span><span class="n">signal</span><span class="p">)</span>
+
+<span class="c1"># Phase-amplitude coupling</span>
+<span class="n">pac</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">nn</span><span class="o">.</span><span class="n">PAC</span><span class="p">(</span><span class="n">seq_len</span><span class="o">=</span><span class="mi">1024</span><span class="p">,</span> <span class="n">fs</span><span class="o">=</span><span class="mi">256</span><span class="p">)</span>
+<span class="n">coupling</span> <span class="o">=</span> <span class="n">pac</span><span class="p">(</span><span class="n">signal</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="signal-processing-layers">
+<h2>Signal Processing Layers<a class="headerlink" href="#signal-processing-layers" title="Link to this heading"></a></h2>
+<p><strong>Filtering</strong> (all differentiable):</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">BandPassFilter(bands,</span> <span class="pre">fs,</span> <span class="pre">seq_len)</span></code> – Multi-band frequency filtering</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">BandStopFilter(bands,</span> <span class="pre">fs,</span> <span class="pre">seq_len)</span></code> – Reject frequency bands</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">LowPassFilter(cutoffs_hz,</span> <span class="pre">fs,</span> <span class="pre">seq_len)</span></code> – Anti-aliasing / smoothing</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">HighPassFilter(cutoffs_hz,</span> <span class="pre">fs,</span> <span class="pre">seq_len)</span></code> – High-frequency emphasis</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">GaussianFilter(sigma)</span></code> – Gaussian kernel smoothing</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">DifferentiableBandPassFilter(...)</span></code> – Learnable bandpass parameters</p></li>
+</ul>
+<p><strong>Spectral Analysis</strong>:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">Spectrogram(sampling_rate,</span> <span class="pre">n_fft)</span></code> – STFT-based magnitude spectrogram</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">PSD(sample_rate,</span> <span class="pre">prob)</span></code> – FFT-based power spectral density</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">Wavelet(samp_rate,</span> <span class="pre">freq_scale)</span></code> – Continuous wavelet transform</p></li>
+</ul>
+<p><strong>Phase &amp; Coupling</strong>:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">Hilbert(seq_len)</span></code> – Analytic signal (phase + amplitude)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ModulationIndex(n_bins)</span></code> – Phase-amplitude coupling metric</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">PAC(seq_len,</span> <span class="pre">fs,</span> <span class="pre">...)</span></code> – Complete PAC analysis pipeline</p></li>
+</ul>
+</section>
+<section id="channel-manipulation">
+<h2>Channel Manipulation<a class="headerlink" href="#channel-manipulation" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">SwapChannels()</span></code> – Random channel permutation (training augmentation)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">DropoutChannels(dropout)</span></code> – Drop entire channels</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ChannelGainChanger(n_chs)</span></code> – Learnable per-channel scaling</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">FreqGainChanger(n_bands,</span> <span class="pre">fs)</span></code> – Learnable per-band scaling</p></li>
+</ul>
+</section>
+<section id="attention-shape">
+<h2>Attention &amp; Shape<a class="headerlink" href="#attention-shape" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">SpatialAttention(n_chs_in)</span></code> – Adaptive channel weighting</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">TransposeLayer(axis1,</span> <span class="pre">axis2)</span></code> – Dimension permutation</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">AxiswiseDropout(dropout_prob,</span> <span class="pre">dim)</span></code> – Drop entire axis</p></li>
+</ul>
+</section>
+<section id="architectures">
+<h2>Architectures<a class="headerlink" href="#architectures" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">ResNet1D(n_chs,</span> <span class="pre">n_out,</span> <span class="pre">n_blks)</span></code> – 1D residual network</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">BNet</span></code> / <code class="docutils literal notranslate"><span class="pre">BNet_Res</span></code> – Multi-head EEG classifier</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">MNet1000</span></code> – 2D CNN feature extractor</p></li>
+</ul>
+</section>
+<section id="module-scitex.nn">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.nn" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
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+
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diff --git a/src/scitex/_sphinx_html/source/api/notebook.html b/src/scitex/_sphinx_html/source/api/notebook.html
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--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/notebook.html
@@ -0,0 +1,915 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>notebook Module (stx.notebook) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/notebook.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.notebook">
+<span id="notebook-module-stx-notebook"></span><h1>notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)<a class="headerlink" href="#module-scitex.notebook" title="Link to this heading"></a></h1>
+<p>SciTeX Notebook — Jupyter notebook verification and compilation.</p>
+<p>Provides tools to verify, compile, convert, and check Jupyter notebooks
+for reproducibility using the Clew verification system.</p>
+<p>Key Concept: Notebooks can be executed in any cell order. SciTeX records
+actual execution order via timestamps, then reconstructs the dependency
+DAG afterward (“do what you want, organize later”).</p>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_notebook</span><span class="w"> </span><span class="kn">import</span> <span class="n">verify_notebook</span><span class="p">,</span> <span class="n">compile_notebook</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">results</span> <span class="o">=</span> <span class="n">verify_notebook</span><span class="p">(</span><span class="s2">&quot;experiment.ipynb&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">compiled</span> <span class="o">=</span> <span class="n">compile_notebook</span><span class="p">(</span><span class="s2">&quot;experiment.ipynb&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">compiled</span><span class="o">.</span><span class="n">to_mermaid</span><span class="p">())</span>  <span class="c1"># DAG visualization</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">compiled</span><span class="o">.</span><span class="n">to_script</span><span class="p">())</span>   <span class="c1"># DAG-ordered .py</span>
+</pre></div>
+</div>
+</div>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.notebook.parse_notebook">
+<span class="sig-prename descclassname"><span class="pre">scitex.notebook.</span></span><span class="sig-name descname"><span class="pre">parse_notebook</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_parse.html#parse_notebook"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.parse_notebook" title="Link to this definition"></a></dt>
+<dd><p>Parse a .ipynb file and extract code cells.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to the .ipynb file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Code cells with keys: index, source, cell_id, cell_type.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.notebook.get_code_cells">
+<span class="sig-prename descclassname"><span class="pre">scitex.notebook.</span></span><span class="sig-name descname"><span class="pre">get_code_cells</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_parse.html#get_code_cells"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.get_code_cells" title="Link to this definition"></a></dt>
+<dd><p>Parse notebook and return only code cells.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to the .ipynb file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Code cells only.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.notebook.get_notebook_name">
+<span class="sig-prename descclassname"><span class="pre">scitex.notebook.</span></span><span class="sig-name descname"><span class="pre">get_notebook_name</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_parse.html#get_notebook_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.get_notebook_name" title="Link to this definition"></a></dt>
+<dd><p>Return the notebook stem name without extension.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.notebook.verify_notebook">
+<span class="sig-prename descclassname"><span class="pre">scitex.notebook.</span></span><span class="sig-name descname"><span class="pre">verify_notebook</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_verify.html#verify_notebook"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.verify_notebook" title="Link to this definition"></a></dt>
+<dd><p>Verify all clew sessions associated with a notebook.</p>
+<p>Finds all runs in the clew DB whose metadata contains this notebook’s
+path, then runs L1 (cache) verification on each.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to the .ipynb file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Verification results per session.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.notebook.check_notebook">
+<span class="sig-prename descclassname"><span class="pre">scitex.notebook.</span></span><span class="sig-name descname"><span class="pre">check_notebook</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_verify.html#check_notebook"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.check_notebook" title="Link to this definition"></a></dt>
+<dd><p>Find cells with scitex.io calls not wrapped in &#64;scitex.session.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to the .ipynb file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Cells with untracked IO: {index, has_load, has_save, has_session}.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.notebook.compile_notebook">
+<span class="sig-prename descclassname"><span class="pre">scitex.notebook.</span></span><span class="sig-name descname"><span class="pre">compile_notebook</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_compile.html#compile_notebook"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.compile_notebook" title="Link to this definition"></a></dt>
+<dd><p>Compile a notebook’s execution history into a DAG.</p>
+<p>Queries the clew DB for all sessions associated with this notebook,
+sorts by timestamp, and builds a dependency DAG based on shared
+input/output files.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to the .ipynb file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Compiled execution history with DAG and execution order.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.notebook.CompiledNotebook" title="scitex_notebook._compile.CompiledNotebook"><code class="xref py py-class docutils literal notranslate"><span class="pre">CompiledNotebook</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.notebook.CompiledNotebook">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.notebook.</span></span><span class="sig-name descname"><span class="pre">CompiledNotebook</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">notebook_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">execution_order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">runs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_compile.html#CompiledNotebook"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.CompiledNotebook" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Result of compiling a notebook’s execution history.</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.notebook.CompiledNotebook.notebook_path">
+<span class="sig-name descname"><span class="pre">notebook_path</span></span><a class="headerlink" href="#scitex.notebook.CompiledNotebook.notebook_path" title="Link to this definition"></a></dt>
+<dd><p>Path to the source notebook.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.notebook.CompiledNotebook.execution_order">
+<span class="sig-name descname"><span class="pre">execution_order</span></span><a class="headerlink" href="#scitex.notebook.CompiledNotebook.execution_order" title="Link to this definition"></a></dt>
+<dd><p>Session IDs in actual execution order (by timestamp).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a> of <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.notebook.CompiledNotebook.dag">
+<span class="sig-name descname"><span class="pre">dag</span></span><a class="headerlink" href="#scitex.notebook.CompiledNotebook.dag" title="Link to this definition"></a></dt>
+<dd><p>Adjacency list: {session_id: [dependent_session_ids]}.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)">dict</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.notebook.CompiledNotebook.runs">
+<span class="sig-name descname"><span class="pre">runs</span></span><a class="headerlink" href="#scitex.notebook.CompiledNotebook.runs" title="Link to this definition"></a></dt>
+<dd><p>Run records sorted by execution time.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)">list</a> of <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)">dict</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id0">
+<span class="sig-name descname"><span class="pre">notebook_path</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><a class="headerlink" href="#id0" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id1">
+<span class="sig-name descname"><span class="pre">execution_order</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#id1" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id2">
+<span class="sig-name descname"><span class="pre">dag</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><span class="pre">Dict</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">,</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#id2" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="id3">
+<span class="sig-name descname"><span class="pre">runs</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><span class="pre">Dict</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#id3" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.notebook.CompiledNotebook.to_script">
+<span class="sig-name descname"><span class="pre">to_script</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_compile.html#CompiledNotebook.to_script"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.CompiledNotebook.to_script" title="Link to this definition"></a></dt>
+<dd><p>Generate a .py script with sessions in DAG order.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.notebook.CompiledNotebook.to_mermaid">
+<span class="sig-name descname"><span class="pre">to_mermaid</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_compile.html#CompiledNotebook.to_mermaid"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.CompiledNotebook.to_mermaid" title="Link to this definition"></a></dt>
+<dd><p>Generate a Mermaid DAG diagram of execution flow.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.notebook.convert_notebook">
+<span class="sig-prename descclassname"><span class="pre">scitex.notebook.</span></span><span class="sig-name descname"><span class="pre">convert_notebook</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'cell'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'per_cell'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_notebook/_convert.html#convert_notebook"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.notebook.convert_notebook" title="Link to this definition"></a></dt>
+<dd><p>Convert a .ipynb notebook to a .py script with &#64;stx.session.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to the .ipynb file.</p></li>
+<li><p><strong>output</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – Output .py file path. If None, returns string only.</p></li>
+<li><p><strong>order</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Cell ordering: “cell” (notebook order) or “dag” (execution order
+from clew DB timestamps).</p></li>
+<li><p><strong>mode</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – <p>Conversion mode:
+- “per_cell”: Each code cell becomes a separate &#64;stx.session function (default).
+- “unified”: All cells merged into a single &#64;stx.session main() function.</p>
+<blockquote>
+<div><p>Markdown cells become comments, imports are hoisted, and common
+notebook patterns (plt.show, pd.read_csv, etc.) are converted to
+SciTeX equivalents (stx.io.save/load).</p>
+</div></blockquote>
+</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The generated Python script content.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/notification.html b/src/scitex/_sphinx_html/source/api/notification.html
new file mode 100644
index 000000000..08f7e1992
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/notification.html
@@ -0,0 +1,800 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Notification Module (stx.notification) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Notification Module (<code class="docutils literal notranslate"><span class="pre">stx.notification</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/notification.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="notification-module-stx-notification">
+<h1>Notification Module (<code class="docutils literal notranslate"><span class="pre">stx.notification</span></code>)<a class="headerlink" href="#notification-module-stx-notification" title="Link to this heading"></a></h1>
+<p>Multi-backend notification system for alerting researchers when
+long-running tasks complete, errors occur, or results are ready.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">stx.notification</span></code> delegates to the standalone
+<a class="reference external" href="https://github.com/ywatanabe1989/scitex-notification">scitex-notification</a>
+package. Install with: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-notification</span></code>.</p>
+</div>
+<section id="supported-backends">
+<h2>Supported Backends<a class="headerlink" href="#supported-backends" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 80.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Backend</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">desktop</span></code></p></td>
+<td><p>Native desktop notifications (Linux <code class="docutils literal notranslate"><span class="pre">notify-send</span></code>, macOS, Windows)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">email</span></code></p></td>
+<td><p>Email via SMTP</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">slack</span></code></p></td>
+<td><p>Slack messages via webhook or Bot API</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">webhook</span></code></p></td>
+<td><p>Generic HTTP POST to any URL</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="quick-start">
+<h2>Quick Start<a class="headerlink" href="#quick-start" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Send a notification (uses default backend)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">send</span><span class="p">(</span><span class="s2">&quot;Training complete! Accuracy: 95.2%&quot;</span><span class="p">)</span>
+
+<span class="c1"># Send to a specific backend</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">send</span><span class="p">(</span><span class="s2">&quot;Job finished&quot;</span><span class="p">,</span> <span class="n">backend</span><span class="o">=</span><span class="s2">&quot;slack&quot;</span><span class="p">)</span>
+
+<span class="c1"># List available backends</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">list_backends</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="key-functions">
+<h2>Key Functions<a class="headerlink" href="#key-functions" title="Link to this heading"></a></h2>
+<section id="send-message-backend-none-kwargs">
+<h3><code class="docutils literal notranslate"><span class="pre">send(message,</span> <span class="pre">backend=None,</span> <span class="pre">**kwargs)</span></code><a class="headerlink" href="#send-message-backend-none-kwargs" title="Link to this heading"></a></h3>
+<p>Send a notification through one or more backends.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Simple message</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">send</span><span class="p">(</span><span class="s2">&quot;Experiment finished successfully.&quot;</span><span class="p">)</span>
+
+<span class="c1"># With title</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">send</span><span class="p">(</span><span class="s2">&quot;95.2</span><span class="si">% a</span><span class="s2">ccuracy achieved&quot;</span><span class="p">,</span> <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Training Complete&quot;</span><span class="p">)</span>
+
+<span class="c1"># To a specific backend</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">send</span><span class="p">(</span><span class="s2">&quot;Results ready&quot;</span><span class="p">,</span> <span class="n">backend</span><span class="o">=</span><span class="s2">&quot;email&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="config-kwargs">
+<h3><code class="docutils literal notranslate"><span class="pre">config(**kwargs)</span></code><a class="headerlink" href="#config-kwargs" title="Link to this heading"></a></h3>
+<p>Configure notification backends. Settings persist across sessions.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Configure Slack</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">config</span><span class="p">(</span>
+    <span class="n">slack_webhook</span><span class="o">=</span><span class="s2">&quot;https://hooks.slack.com/services/...&quot;</span><span class="p">,</span>
+<span class="p">)</span>
+
+<span class="c1"># Configure email</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">config</span><span class="p">(</span>
+    <span class="n">email_to</span><span class="o">=</span><span class="s2">&quot;researcher@university.edu&quot;</span><span class="p">,</span>
+    <span class="n">email_from</span><span class="o">=</span><span class="s2">&quot;scitex@lab.org&quot;</span><span class="p">,</span>
+    <span class="n">smtp_host</span><span class="o">=</span><span class="s2">&quot;smtp.university.edu&quot;</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="list-backends">
+<h3><code class="docutils literal notranslate"><span class="pre">list_backends()</span></code><a class="headerlink" href="#list-backends" title="Link to this heading"></a></h3>
+<p>List available and configured backends.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">backends</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">notification</span><span class="o">.</span><span class="n">list_backends</span><span class="p">()</span>
+<span class="c1"># [{&#39;name&#39;: &#39;desktop&#39;, &#39;available&#39;: True, &#39;configured&#39;: True},</span>
+<span class="c1">#  {&#39;name&#39;: &#39;slack&#39;, &#39;available&#39;: True, &#39;configured&#39;: False}, ...]</span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="integration-with-stx-session">
+<h2>Integration with <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code><a class="headerlink" href="#integration-with-stx-session" title="Link to this heading"></a></h2>
+<p>Enable automatic notifications when a session completes:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span><span class="p">(</span><span class="n">notify</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Long-running experiment.&quot;&quot;&quot;</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">train_model</span><span class="p">()</span>
+    <span class="k">return</span> <span class="mi">0</span>    <span class="c1"># Sends &quot;Session FINISHED_SUCCESS&quot; notification</span>
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="n">main</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-access">
+<h2>CLI Access<a class="headerlink" href="#cli-access" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Send a notification</span>
+scitex<span class="w"> </span>notify<span class="w"> </span>send<span class="w"> </span><span class="s2">&quot;Job complete&quot;</span>
+
+<span class="c1"># Check backend status</span>
+scitex<span class="w"> </span>notify<span class="w"> </span>backends
+
+<span class="c1"># Configure a backend</span>
+scitex<span class="w"> </span>notify<span class="w"> </span>config<span class="w"> </span>--slack-webhook<span class="w"> </span><span class="s2">&quot;https://...&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.notification">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.notification" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/os.html b/src/scitex/_sphinx_html/source/api/os.html
new file mode 100644
index 000000000..c21309a70
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/os.html
@@ -0,0 +1,697 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>os Module (stx.os) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
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+<body class="wy-body-for-nav"> 
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/os.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.os">
+<span id="os-module-stx-os"></span><h1>os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)<a class="headerlink" href="#module-scitex.os" title="Link to this heading"></a></h1>
+<p>scitex-os — host check + safe file mv (standalone, pure stdlib).</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.os.check_host">
+<span class="sig-prename descclassname"><span class="pre">scitex.os.</span></span><span class="sig-name descname"><span class="pre">check_host</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">keyword</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_os/_check_host.html#check_host"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.os.check_host" title="Link to this definition"></a></dt>
+<dd><p>Check if the current hostname contains the given keyword.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.os.is_host">
+<span class="sig-prename descclassname"><span class="pre">scitex.os.</span></span><span class="sig-name descname"><span class="pre">is_host</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">keyword</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.os.is_host" title="Link to this definition"></a></dt>
+<dd><p>Check if the current hostname contains the given keyword.</p>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.os.mv">
+<span class="sig-prename descclassname"><span class="pre">scitex.os.</span></span><span class="sig-name descname"><span class="pre">mv</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tgt</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_os/_mv.html#mv"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.os.mv" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.os.verify_host">
+<span class="sig-prename descclassname"><span class="pre">scitex.os.</span></span><span class="sig-name descname"><span class="pre">verify_host</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">keyword</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_os/_check_host.html#verify_host"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.os.verify_host" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
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+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/parallel.html b/src/scitex/_sphinx_html/source/api/parallel.html
new file mode 100644
index 000000000..dcba55a68
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/parallel.html
@@ -0,0 +1,707 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>parallel Module (stx.parallel) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
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+        </div>
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+      <li class="breadcrumb-item active">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</li>
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+             
+  <section id="module-scitex.parallel">
+<span id="parallel-module-stx-parallel"></span><h1>parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)<a class="headerlink" href="#module-scitex.parallel" title="Link to this heading"></a></h1>
+<p>SciTeX Parallel — thread/process pool parallel execution utilities.</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.parallel.run">
+<span class="sig-prename descclassname"><span class="pre">scitex.parallel.</span></span><span class="sig-name descname"><span class="pre">run</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">func</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">args_list</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_jobs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">desc</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Processing'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_parallel/_run.html#run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.parallel.run" title="Link to this definition"></a></dt>
+<dd><p>Runs function in parallel using ThreadPoolExecutor with tuple arguments.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>func</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a></span>) – Function to run in parallel</p></li>
+<li><p><strong>args_list</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a>]</span>) – List of argument tuples, each tuple contains arguments for one function call</p></li>
+<li><p><strong>n_jobs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Number of jobs to run in parallel. -1 means using all processors</p></li>
+<li><p><strong>desc</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Description for progress bar</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Results of parallel execution</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="k">def</span><span class="w"> </span><span class="nf">add</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+<span class="gp">... </span>    <span class="k">return</span> <span class="n">x</span> <span class="o">+</span> <span class="n">y</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">args_list</span> <span class="o">=</span> <span class="p">[(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">),</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">5</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">6</span><span class="p">)]</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">run</span><span class="p">(</span><span class="n">add</span><span class="p">,</span> <span class="n">args_list</span><span class="p">)</span>
+<span class="go">[5, 7, 9]</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+</section>
+
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diff --git a/src/scitex/_sphinx_html/source/api/path.html b/src/scitex/_sphinx_html/source/api/path.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/path.html
@@ -0,0 +1,1140 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>path Module (stx.path) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/path.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.path">
+<span id="path-module-stx-path"></span><h1>path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)<a class="headerlink" href="#module-scitex.path" title="Link to this heading"></a></h1>
+<p>scitex-path: Scientific project path utilities (find, split, symlink, versioning).</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.clean">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">clean</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path_string</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_clean.html#clean"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.clean" title="Link to this definition"></a></dt>
+<dd><p>Cleans and normalizes a file system path string.</p>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">clean</span><span class="p">(</span><span class="s1">&#39;/home/user/./folder/../file.txt&#39;</span><span class="p">)</span>
+<span class="go">&#39;/home/user/file.txt&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">clean</span><span class="p">(</span><span class="s1">&#39;path/./to//file.txt&#39;</span><span class="p">)</span>
+<span class="go">&#39;path/to/file.txt&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">clean</span><span class="p">(</span><span class="s1">&#39;path with spaces&#39;</span><span class="p">)</span>
+<span class="go">&#39;path_with_spaces&#39;</span>
+</pre></div>
+</div>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path_string</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – File path to clean</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Normalized path string</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.create_relative_symlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">create_relative_symlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dst</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_symlink.html#create_relative_symlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.create_relative_symlink" title="Link to this definition"></a></dt>
+<dd><p>Create a relative symbolic link.</p>
+<p>This is a convenience wrapper around symlink() with relative=True.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>src</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Source path (target of the symlink)</p></li>
+<li><p><strong>dst</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Destination path (the symlink to create)</p></li>
+<li><p><strong>overwrite</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, remove existing dst before creating symlink</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path object of the created symlink</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.find_dir">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">find_dir</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exp</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_find.html#find_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.find_dir" title="Link to this definition"></a></dt>
+<dd><p>Find directories matching pattern.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.find_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">find_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exp</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_find.html#find_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.find_file" title="Link to this definition"></a></dt>
+<dd><p>Find files matching pattern.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.find_git_root">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">find_git_root</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_find.html#find_git_root"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.find_git_root" title="Link to this definition"></a></dt>
+<dd><p>Find the root directory of the current git repository.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path to the git repository root.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.find_latest">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">find_latest</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dirname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ext</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">version_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'_v'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_version.html#find_latest"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.find_latest" title="Link to this definition"></a></dt>
+<dd><p>Find the latest versioned file in a directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dirname</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – Directory to search in.</p></li>
+<li><p><strong>fname</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – Base filename without version number or extension.</p></li>
+<li><p><strong>ext</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – File extension including the dot (e.g., ‘.txt’).</p></li>
+<li><p><strong>version_prefix</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Prefix before the version number. Default is ‘_v’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Path to the latest versioned file, or None if not found.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a> or None</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.fix_broken_symlinks">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">fix_broken_symlinks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">directory</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recursive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">remove</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">new_target</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_symlink.html#fix_broken_symlinks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.fix_broken_symlinks" title="Link to this definition"></a></dt>
+<dd><p>Find and optionally fix broken symbolic links.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>directory</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Directory to search</p></li>
+<li><p><strong>recursive</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, search recursively</p></li>
+<li><p><strong>remove</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, remove broken symlinks</p></li>
+<li><p><strong>new_target</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]</span>) – If provided, repoint broken symlinks to this target</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Dictionary with ‘found’, ‘fixed’, and ‘removed’ lists of paths</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.get_data_path_from_a_package">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">get_data_path_from_a_package</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">package_str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">resource</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_get_module_path.html#get_data_path_from_a_package"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.get_data_path_from_a_package" title="Link to this definition"></a></dt>
+<dd><p>Get the path to a data file within a package.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>package_str</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – The name of the package as a string.</p></li>
+<li><p><strong>resource</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – The name of the resource file within the package’s data directory.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The full path to the resource file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ImportError" title="(in Python v3.14)"><strong>ImportError</strong></a> – If the specified package cannot be found.</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If the resource file does not exist in the package’s data directory.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.get_spath">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">get_spath</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sfname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">makedirs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.path.get_spath" title="Link to this definition"></a></dt>
+<dd><p>Create a save path based on the calling script’s location.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>sfname</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – The name of the file to be saved.</p></li>
+<li><p><strong>makedirs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, create the directory structure for the save path.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The full save path for the file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">spath</span> <span class="o">=</span> <span class="n">mk_spath</span><span class="p">(</span><span class="s1">&#39;output.txt&#39;</span><span class="p">,</span> <span class="n">makedirs</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.get_this_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">get_this_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ipython_fake_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/tmp/fake.py'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.path.get_this_path" title="Link to this definition"></a></dt>
+<dd><p>Get the path of the calling script.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>This function historically captures the caller’s filename via
+<code class="docutils literal notranslate"><span class="pre">inspect.stack()[1]</span></code> but then returns this module’s <code class="docutils literal notranslate"><span class="pre">__file__</span></code>.
+The tests codify that legacy behavior; do not change without
+updating callers.</p>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.getsize">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">getsize</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_getsize.html#getsize"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.getsize" title="Link to this definition"></a></dt>
+<dd><p>Get file size in bytes.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to file.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>File size in bytes, or math.nan if file doesn’t exist.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a>]</span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#PermissionError" title="(in Python v3.14)"><strong>PermissionError</strong></a> – If the file cannot be accessed due to permissions.</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.increment_version">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">increment_version</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dirname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ext</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">version_prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'_v'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_version.html#increment_version"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.increment_version" title="Link to this definition"></a></dt>
+<dd><p>Generate the next version of a filename based on existing versioned files.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dirname</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – Directory to search in.</p></li>
+<li><p><strong>fname</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – Base filename without version number or extension.</p></li>
+<li><p><strong>ext</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a>) – File extension including the dot (e.g., ‘.txt’).</p></li>
+<li><p><strong>version_prefix</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Prefix before the version number. Default is ‘_v’.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Full path for the next version of the file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">increment_version</span><span class="p">(</span><span class="s1">&#39;/path/to/dir&#39;</span><span class="p">,</span> <span class="s1">&#39;myfile&#39;</span><span class="p">,</span> <span class="s1">&#39;.txt&#39;</span><span class="p">)</span>
+<span class="go">&#39;/path/to/dir/myfile_v001.txt&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.is_symlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">is_symlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_symlink.html#is_symlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.is_symlink" title="Link to this definition"></a></dt>
+<dd><p>Check if a path is a symbolic link.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path to check</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>True if path is a symlink, False otherwise</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.list_symlinks">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">list_symlinks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">directory</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recursive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_symlink.html#list_symlinks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.list_symlinks" title="Link to this definition"></a></dt>
+<dd><p>List all symbolic links in a directory.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>directory</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Directory to search</p></li>
+<li><p><strong>recursive</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, search recursively</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>List of Path objects for all symlinks found</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.mk_spath">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">mk_spath</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sfname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">makedirs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_mk_spath.html#mk_spath"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.mk_spath" title="Link to this definition"></a></dt>
+<dd><p>Create a save path based on the calling script’s location.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>sfname</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – The name of the file to be saved.</p></li>
+<li><p><strong>makedirs</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, create the directory structure for the save path.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>The full save path for the file.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">spath</span> <span class="o">=</span> <span class="n">mk_spath</span><span class="p">(</span><span class="s1">&#39;output.txt&#39;</span><span class="p">,</span> <span class="n">makedirs</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.readlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">readlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_symlink.html#readlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.readlink" title="Link to this definition"></a></dt>
+<dd><p>Return the path to which the symbolic link points.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Symlink path to read</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path object pointing to the symlink target</p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#OSError" title="(in Python v3.14)"><strong>OSError</strong></a> – If path is not a symlink</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.resolve_symlinks">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">resolve_symlinks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_symlink.html#resolve_symlinks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.resolve_symlinks" title="Link to this definition"></a></dt>
+<dd><p>Resolve all symbolic links in a path.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Path potentially containing symlinks</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Fully resolved absolute path</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.split">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">split</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fpath</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_split.html#split"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.split" title="Link to this definition"></a></dt>
+<dd><p>Split a file path into directory, filename, and extension.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>fpath</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – File path to split.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(directory with trailing slash, filename without extension, extension)</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Tuple" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">dirname</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">ext</span> <span class="o">=</span> <span class="n">split</span><span class="p">(</span><span class="s1">&#39;/path/to/file.txt&#39;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">dirname</span>
+<span class="go">&#39;/path/to/&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">fname</span>
+<span class="go">&#39;file&#39;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">ext</span>
+<span class="go">&#39;.txt&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.symlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">symlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dst</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_is_directory</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">relative</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_symlink.html#symlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.symlink" title="Link to this definition"></a></dt>
+<dd><p>Create a symbolic link pointing to src named dst.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>src</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Source path (target of the symlink)</p></li>
+<li><p><strong>dst</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Destination path (the symlink to create)</p></li>
+<li><p><strong>overwrite</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, remove existing dst before creating symlink</p></li>
+<li><p><strong>target_is_directory</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>]</span>) – On Windows, specify if target is directory (auto-detected if None)</p></li>
+<li><p><strong>relative</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, create relative symlink instead of absolute</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path object of the created symlink</p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileExistsError" title="(in Python v3.14)"><strong>FileExistsError</strong></a> – If dst exists and overwrite=False</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If src doesn’t exist</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#OSError" title="(in Python v3.14)"><strong>OSError</strong></a> – If symlink creation fails</p></li>
+</ul>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_path</span><span class="w"> </span><span class="kn">import</span> <span class="n">symlink</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Create absolute symlink</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">symlink</span><span class="p">(</span><span class="s2">&quot;/path/to/source&quot;</span><span class="p">,</span> <span class="s2">&quot;/path/to/link&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># Create relative symlink</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">symlink</span><span class="p">(</span><span class="s2">&quot;../source&quot;</span><span class="p">,</span> <span class="s2">&quot;link&quot;</span><span class="p">,</span> <span class="n">relative</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># Overwrite existing symlink</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">symlink</span><span class="p">(</span><span class="s2">&quot;/path/to/new_source&quot;</span><span class="p">,</span> <span class="s2">&quot;/path/to/link&quot;</span><span class="p">,</span> <span class="n">overwrite</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.this_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">this_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ipython_fake_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/tmp/fake.py'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_this_path.html#this_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.this_path" title="Link to this definition"></a></dt>
+<dd><p>Get the path of the calling script.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>This function historically captures the caller’s filename via
+<code class="docutils literal notranslate"><span class="pre">inspect.stack()[1]</span></code> but then returns this module’s <code class="docutils literal notranslate"><span class="pre">__file__</span></code>.
+The tests codify that legacy behavior; do not change without
+updating callers.</p>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.path.unlink_symlink">
+<span class="sig-prename descclassname"><span class="pre">scitex.path.</span></span><span class="sig-name descname"><span class="pre">unlink_symlink</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">missing_ok</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_path/_symlink.html#unlink_symlink"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.path.unlink_symlink" title="Link to this definition"></a></dt>
+<dd><p>Remove a symbolic link.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Symlink to remove</p></li>
+<li><p><strong>missing_ok</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, don’t raise error if symlink doesn’t exist</p></li>
+</ul>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><ul class="simple">
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#FileNotFoundError" title="(in Python v3.14)"><strong>FileNotFoundError</strong></a> – If symlink doesn’t exist and missing_ok=False</p></li>
+<li><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#OSError" title="(in Python v3.14)"><strong>OSError</strong></a> – If path is not a symlink</p></li>
+</ul>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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diff --git a/src/scitex/_sphinx_html/source/api/pd.html b/src/scitex/_sphinx_html/source/api/pd.html
new file mode 100644
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--- /dev/null
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@@ -0,0 +1,714 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <title>PD Module (stx.pd) &mdash; SciTeX v0.0.0</title>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/pd.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="pd-module-stx-pd">
+<h1>PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)<a class="headerlink" href="#pd-module-stx-pd" title="Link to this heading"></a></h1>
+<p>Pandas DataFrame helper functions for common transformations.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+
+<span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">({</span>
+    <span class="s2">&quot;subject&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;A&quot;</span><span class="p">,</span> <span class="s2">&quot;A&quot;</span><span class="p">,</span> <span class="s2">&quot;B&quot;</span><span class="p">,</span> <span class="s2">&quot;B&quot;</span><span class="p">],</span>
+    <span class="s2">&quot;condition&quot;</span><span class="p">:</span> <span class="p">[</span><span class="s2">&quot;ctrl&quot;</span><span class="p">,</span> <span class="s2">&quot;exp&quot;</span><span class="p">,</span> <span class="s2">&quot;ctrl&quot;</span><span class="p">,</span> <span class="s2">&quot;exp&quot;</span><span class="p">],</span>
+    <span class="s2">&quot;score&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">10</span><span class="p">,</span> <span class="mi">15</span><span class="p">,</span> <span class="mi">12</span><span class="p">,</span> <span class="mi">18</span><span class="p">],</span>
+<span class="p">})</span>
+
+<span class="c1"># Find individual (unique) values</span>
+<span class="n">subjects</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">pd</span><span class="o">.</span><span class="n">find_indi</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="s2">&quot;subject&quot;</span><span class="p">)</span>
+
+<span class="c1"># Convert to long format</span>
+<span class="n">melted</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">pd</span><span class="o">.</span><span class="n">melt_cols</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">id_vars</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;subject&quot;</span><span class="p">])</span>
+
+<span class="c1"># Merge columns</span>
+<span class="n">merged</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">pd</span><span class="o">.</span><span class="n">merge_cols</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">cols</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;subject&quot;</span><span class="p">,</span> <span class="s2">&quot;condition&quot;</span><span class="p">],</span> <span class="n">sep</span><span class="o">=</span><span class="s2">&quot;_&quot;</span><span class="p">)</span>
+
+<span class="c1"># Force to DataFrame</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">pd</span><span class="o">.</span><span class="n">force_df</span><span class="p">({</span><span class="s2">&quot;a&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">],</span> <span class="s2">&quot;b&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">]})</span>
+</pre></div>
+</div>
+</section>
+<section id="available-functions">
+<h2>Available Functions<a class="headerlink" href="#available-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">find_indi(df,</span> <span class="pre">col)</span></code> – Find unique individual identifiers</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">find_pval(df)</span></code> – Find p-value columns in a DataFrame</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">force_df(data)</span></code> – Convert any data to a DataFrame</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">melt_cols(df,</span> <span class="pre">id_vars)</span></code> – Melt columns to long format</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">merge_cols(df,</span> <span class="pre">cols,</span> <span class="pre">sep)</span></code> – Merge multiple columns into one</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">to_xyz(df,</span> <span class="pre">x,</span> <span class="pre">y,</span> <span class="pre">z)</span></code> – Reshape to x, y, z pivot format</p></li>
+</ul>
+</section>
+<section id="module-scitex.pd">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.pd" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">scitex.plt</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/plt.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="scitex-plt">
+<h1>scitex.plt<a class="headerlink" href="#scitex-plt" title="Link to this heading"></a></h1>
+<section id="figure-and-axis-creation">
+<h2>Figure and Axis Creation<a class="headerlink" href="#figure-and-axis-creation" title="Link to this heading"></a></h2>
+</section>
+<section id="gallery">
+<h2>Gallery<a class="headerlink" href="#gallery" title="Link to this heading"></a></h2>
+</section>
+<section id="axis-methods">
+<h2>Axis Methods<a class="headerlink" href="#axis-methods" title="Link to this heading"></a></h2>
+<p>The following methods are available on <code class="docutils literal notranslate"><span class="pre">ax</span></code> objects returned by <code class="docutils literal notranslate"><span class="pre">stx.plt.subplots()</span></code>.</p>
+<section id="line-plots">
+<h3>Line Plots<a class="headerlink" href="#line-plots" title="Link to this heading"></a></h3>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+</pre></div>
+</div>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_line">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_line</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_1d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xx</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_line" title="Link to this definition"></a></dt>
+<dd><p>Plot a simple line from 1D array.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>values_1d</strong> – Y values</p></li>
+<li><p><strong>xx</strong> – Optional X values</p></li>
+<li><p><strong>track</strong> – Track data for CSV export</p></li>
+<li><p><strong>id</strong> – Identifier for tracking</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_shaded_line">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_shaded_line</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ys_lower</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ys_middle</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ys_upper</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">label</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_shaded_line" title="Link to this definition"></a></dt>
+<dd><p>Plot a line with shaded area between bounds.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>xs</strong> – X values</p></li>
+<li><p><strong>ys_lower</strong> – Lower bound Y values</p></li>
+<li><p><strong>ys_middle</strong> – Middle line Y values</p></li>
+<li><p><strong>ys_upper</strong> – Upper bound Y values</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+<section id="statistical-plots">
+<h3>Statistical Plots<a class="headerlink" href="#statistical-plots" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_mean_std">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_mean_std</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_2d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xx</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sd</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_mean_std" title="Link to this definition"></a></dt>
+<dd><p>Plot mean line with standard deviation shading.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>values_2d</strong> – 2D array (samples x timepoints)</p></li>
+<li><p><strong>xx</strong> – Optional X values</p></li>
+<li><p><strong>sd</strong> – Number of standard deviations for shading</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_mean_ci">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_mean_ci</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_2d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xx</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">perc</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">95</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_mean_ci" title="Link to this definition"></a></dt>
+<dd><p>Plot mean line with confidence interval shading.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>values_2d</strong> – 2D array (samples x timepoints)</p></li>
+<li><p><strong>xx</strong> – Optional X values</p></li>
+<li><p><strong>perc</strong> – Confidence interval percentage (default: 95)</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_median_iqr">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_median_iqr</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_2d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xx</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_median_iqr" title="Link to this definition"></a></dt>
+<dd><p>Plot median line with interquartile range shading.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>values_2d</strong> – 2D array (samples x timepoints)</p></li>
+<li><p><strong>xx</strong> – Optional X values</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_errorbar">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_errorbar</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">yerr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xerr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_errorbar" title="Link to this definition"></a></dt>
+<dd><p>Error bar plot with scitex styling.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>x</strong> – X coordinates</p></li>
+<li><p><strong>y</strong> – Y coordinates</p></li>
+<li><p><strong>yerr</strong> – Y error values</p></li>
+<li><p><strong>xerr</strong> – X error values</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+<section id="distribution-plots">
+<h3>Distribution Plots<a class="headerlink" href="#distribution-plots" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_kde">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_kde</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_1d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cumulative</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fill</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_kde" title="Link to this definition"></a></dt>
+<dd><p>Plot kernel density estimate.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>values_1d</strong> – 1D array of values</p></li>
+<li><p><strong>cumulative</strong> – Plot cumulative distribution</p></li>
+<li><p><strong>fill</strong> – Fill under curve</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_ecdf">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_ecdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_1d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_ecdf" title="Link to this definition"></a></dt>
+<dd><p>Plot empirical cumulative distribution function.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>values_1d</strong> – 1D array of values</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.hist">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">hist</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bins</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">range</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">align_bins</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.hist" title="Link to this definition"></a></dt>
+<dd><p>Plot histogram with bin alignment support.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>x</strong> – Input data</p></li>
+<li><p><strong>bins</strong> – Number of bins or bin edges</p></li>
+<li><p><strong>align_bins</strong> – Align bins with other histograms on same axis</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+<section id="categorical-plots">
+<h3>Categorical Plots<a class="headerlink" href="#categorical-plots" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_box">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_box</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_list</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">colors</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_box" title="Link to this definition"></a></dt>
+<dd><p>Boxplot with scitex styling.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>values_list</strong> – List of arrays for each box</p></li>
+<li><p><strong>colors</strong> – Optional colors for boxes</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_violin">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_violin</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_list</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hue</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">colors</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">half</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_violin" title="Link to this definition"></a></dt>
+<dd><p>Violin plot with scitex styling.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>values_list</strong> – List of arrays or DataFrame</p></li>
+<li><p><strong>half</strong> – Show half violins</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+<section id="scatter-plots">
+<h3>Scatter Plots<a class="headerlink" href="#scatter-plots" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_scatter">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_scatter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_scatter" title="Link to this definition"></a></dt>
+<dd><p>Scatter plot with scitex styling.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>x</strong> – X coordinates</p></li>
+<li><p><strong>y</strong> – Y coordinates</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_scatter_hist">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_scatter_hist</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hist_bins</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scatter_alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.6</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_scatter_hist" title="Link to this definition"></a></dt>
+<dd><p>Scatter plot with marginal histograms.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>x</strong> – X coordinates</p></li>
+<li><p><strong>y</strong> – Y coordinates</p></li>
+<li><p><strong>hist_bins</strong> – Number of histogram bins</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+<section id="bar-plots">
+<h3>Bar Plots<a class="headerlink" href="#bar-plots" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_bar">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_bar</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_bar" title="Link to this definition"></a></dt>
+<dd><p>Vertical bar plot with scitex styling.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>x</strong> – X coordinates</p></li>
+<li><p><strong>height</strong> – Bar heights</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_barh">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_barh</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">y</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">width</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_barh" title="Link to this definition"></a></dt>
+<dd><p>Horizontal bar plot with scitex styling.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>y</strong> – Y coordinates</p></li>
+<li><p><strong>width</strong> – Bar widths</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+<section id="heatmaps">
+<h3>Heatmaps<a class="headerlink" href="#heatmaps" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_heatmap">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_heatmap</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">values_2d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x_labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y_labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'viridis'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cbar_label</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">show_annot</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_heatmap" title="Link to this definition"></a></dt>
+<dd><p>Plot annotated heatmap.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>values_2d</strong> – 2D array</p></li>
+<li><p><strong>x_labels</strong> – Column labels</p></li>
+<li><p><strong>y_labels</strong> – Row labels</p></li>
+<li><p><strong>show_annot</strong> – Show value annotations</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_conf_mat">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_conf_mat</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">conf_mat_2d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x_labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y_labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">title</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Confusion</span> <span class="pre">Matrix'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_conf_mat" title="Link to this definition"></a></dt>
+<dd><p>Plot confusion matrix.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>conf_mat_2d</strong> – 2D confusion matrix array</p></li>
+<li><p><strong>x_labels</strong> – Predicted class labels</p></li>
+<li><p><strong>y_labels</strong> – True class labels</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_image">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_image</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">arr_2d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_image" title="Link to this definition"></a></dt>
+<dd><p>Display 2D array as image.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>arr_2d</strong> – 2D array</p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+<section id="special-plots">
+<h3>Special Plots<a class="headerlink" href="#special-plots" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_raster">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_raster</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">spike_times_list</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">time</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">colors</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_raster" title="Link to this definition"></a></dt>
+<dd><p>Plot spike raster.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>spike_times_list</strong> – List of spike time arrays per neuron</p></li>
+<li><p><strong>time</strong> – Optional time array</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_fillv">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_fillv</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">starts_1d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ends_1d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'red'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_fillv" title="Link to this definition"></a></dt>
+<dd><p>Fill vertical regions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>starts_1d</strong> – Start positions</p></li>
+<li><p><strong>ends_1d</strong> – End positions</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_rectangle">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_rectangle</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xx</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">yy</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">width</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_rectangle" title="Link to this definition"></a></dt>
+<dd><p>Draw rectangle.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>xx</strong> – X position</p></li>
+<li><p><strong>yy</strong> – Y position</p></li>
+<li><p><strong>width</strong> – Rectangle width</p></li>
+<li><p><strong>height</strong> – Rectangle height</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.stx_joyplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">stx_joyplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">arrays</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.stx_joyplot" title="Link to this definition"></a></dt>
+<dd><p>Plot joyplot (ridgeline plot).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>arrays</strong> – List of arrays</p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+<section id="seaborn-wrappers">
+<h3>Seaborn Wrappers<a class="headerlink" href="#seaborn-wrappers" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_barplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_barplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_barplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_boxplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_boxplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strip</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_boxplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_violinplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_violinplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_violinplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_stripplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_stripplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_stripplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_swarmplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_swarmplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_swarmplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_heatmap">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_heatmap</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xyz</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_heatmap" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_histplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_histplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bins</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_histplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_kdeplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_kdeplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_kdeplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_scatterplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_scatterplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_scatterplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_lineplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_lineplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_lineplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_jointplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_jointplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_jointplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.sns_pairplot">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">sns_pairplot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">track</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.sns_pairplot" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+</section>
+<section id="axis-utilities">
+<h3>Axis Utilities<a class="headerlink" href="#axis-utilities" title="Link to this heading"></a></h3>
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.set_xyt">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">set_xyt</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">t</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.set_xyt" title="Link to this definition"></a></dt>
+<dd><p>Set xlabel, ylabel, and title in one call.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="ax.hide_spines">
+<span class="sig-prename descclassname"><span class="pre">ax.</span></span><span class="sig-name descname"><span class="pre">hide_spines</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">spines</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ax.hide_spines" title="Link to this definition"></a></dt>
+<dd><p>Hide specified spines (top, right, bottom, left).</p>
+</dd></dl>
+
+</section>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
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+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
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+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/project.html b/src/scitex/_sphinx_html/source/api/project.html
new file mode 100644
index 000000000..7f8275001
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/project.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>project Module (stx.project) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+          
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+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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diff --git a/src/scitex/_sphinx_html/source/api/repro.html b/src/scitex/_sphinx_html/source/api/repro.html
new file mode 100644
index 000000000..752d49d19
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/repro.html
@@ -0,0 +1,1194 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Repro Module (stx.repro) &mdash; SciTeX v0.0.0</title>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/repro.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="repro-module-stx-repro">
+<h1>Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)<a class="headerlink" href="#repro-module-stx-repro" title="Link to this heading"></a></h1>
+<p>Reproducibility utilities: random state management, ID generation,
+timestamps, and array hashing.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Fix all random seeds (numpy, torch, random, ...)</span>
+<span class="n">rng</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">get</span><span class="p">()</span>           <span class="c1"># Global manager (seed=42)</span>
+<span class="n">rng</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">reset</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">123</span><span class="p">)</span> <span class="c1"># Reset with new seed</span>
+
+<span class="c1"># Named generators for deterministic results</span>
+<span class="n">data_gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span>
+<span class="n">data</span> <span class="o">=</span> <span class="n">data_gen</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>  <span class="c1"># Same seed+name = same result</span>
+
+<span class="c1"># Unique identifiers</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">gen_id</span><span class="p">()</span>
+<span class="c1"># → &quot;2026Y-02M-13D-14h30m15s_a3Bc9xY2&quot;</span>
+
+<span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">gen_timestamp</span><span class="p">()</span>
+<span class="c1"># → &quot;2026-0213-1430&quot;</span>
+
+<span class="c1"># Verify reproducibility</span>
+<span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># First: caches hash</span>
+<span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># Later: verifies match</span>
+</pre></div>
+</div>
+</section>
+<section id="randomstatemanager">
+<h2>RandomStateManager<a class="headerlink" href="#randomstatemanager" title="Link to this heading"></a></h2>
+<p>Central class for managing random states across libraries.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">rng</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">repro</span><span class="o">.</span><span class="n">RandomStateManager</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">42</span><span class="p">)</span>
+
+<span class="c1"># Named generators (same name + seed = deterministic)</span>
+<span class="n">np_gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;experiment&quot;</span><span class="p">)</span>
+<span class="n">torch_gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_torch_generator</span><span class="p">(</span><span class="s2">&quot;model&quot;</span><span class="p">)</span>
+
+<span class="c1"># Checkpoint and restore</span>
+<span class="n">rng</span><span class="o">.</span><span class="n">checkpoint</span><span class="p">(</span><span class="s2">&quot;before_training&quot;</span><span class="p">)</span>
+<span class="n">rng</span><span class="o">.</span><span class="n">restore</span><span class="p">(</span><span class="s2">&quot;before_training.pkl&quot;</span><span class="p">)</span>
+
+<span class="c1"># Temporary seed change</span>
+<span class="k">with</span> <span class="n">rng</span><span class="o">.</span><span class="n">temporary_seed</span><span class="p">(</span><span class="mi">999</span><span class="p">):</span>
+    <span class="n">noise</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;noise&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">10</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>Automatically fixes seeds for: <code class="docutils literal notranslate"><span class="pre">random</span></code>, <code class="docutils literal notranslate"><span class="pre">numpy</span></code>, <code class="docutils literal notranslate"><span class="pre">torch</span></code> (+ CUDA),
+<code class="docutils literal notranslate"><span class="pre">tensorflow</span></code>, <code class="docutils literal notranslate"><span class="pre">jax</span></code>.</p>
+</section>
+<section id="available-functions">
+<h2>Available Functions<a class="headerlink" href="#available-functions" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">get(verbose)</span></code> – Get or create global RandomStateManager singleton</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">reset(seed,</span> <span class="pre">verbose)</span></code> – Reset global instance with new seed</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">fix_seeds(seed,</span> <span class="pre">...)</span></code> – Legacy function (use RandomStateManager instead)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">gen_id(time_format,</span> <span class="pre">N)</span></code> – Generate unique timestamp + random ID</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code> – Generate timestamp string for file naming</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">hash_array(array_data)</span></code> – SHA256 hash of numpy array (16 chars)</p></li>
+</ul>
+</section>
+<section id="module-scitex.repro">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.repro" title="Link to this heading"></a></h2>
+<p>scitex-repro — Reproducibility utilities for scientific computing.</p>
+<p>Provides tools for reproducible scientific computing:
+- Random state management (RandomStateManager)
+- ID generation (gen_ID)
+- Timestamp generation (gen_timestamp)
+- Array hashing (hash_array)</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.gen_ID">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">gen_ID</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">time_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'%YY-%mM-%dD-%Hh%Mm%Ss'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">N</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">8</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.repro.gen_ID" title="Link to this definition"></a></dt>
+<dd><p>Generate a unique identifier with timestamp and random characters.</p>
+<p>Creates a unique ID by combining a formatted timestamp with random
+alphanumeric characters. Useful for creating unique experiment IDs,
+run identifiers, or temporary file names.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>time_format</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Format string for timestamp portion. Default is “%YY-%mM-%dD-%Hh%Mm%Ss”
+which produces “2025Y-05M-31D-12h30m45s” format.</p></li>
+<li><p><strong>N</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><em>int</em></a><em>, </em><em>optional</em>) – Number of random characters to append. Default is 8.</p></li>
+<li><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unique identifier in format “{timestamp}_{random_chars}”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id1</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id1</span><span class="p">)</span>
+<span class="go">&#39;2025Y-05M-31D-12h30m45s_a3Bc9xY2&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id2</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">(</span><span class="n">time_format</span><span class="o">=</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">N</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id2</span><span class="p">)</span>
+<span class="go">&#39;20250531_xY9a&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># For experiment tracking</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">exp_id</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">save_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;results/experiment_</span><span class="si">{</span><span class="n">exp_id</span><span class="si">}</span><span class="s2">.pkl&quot;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.gen_id">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">gen_id</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">time_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'%YY-%mM-%dD-%Hh%Mm%Ss'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">N</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">8</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_gen_ID.html#gen_id"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.gen_id" title="Link to this definition"></a></dt>
+<dd><p>Generate a unique identifier with timestamp and random characters.</p>
+<p>Creates a unique ID by combining a formatted timestamp with random
+alphanumeric characters. Useful for creating unique experiment IDs,
+run identifiers, or temporary file names.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>time_format</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Format string for timestamp portion. Default is “%YY-%mM-%dD-%Hh%Mm%Ss”
+which produces “2025Y-05M-31D-12h30m45s” format.</p></li>
+<li><p><strong>N</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><em>int</em></a><em>, </em><em>optional</em>) – Number of random characters to append. Default is 8.</p></li>
+<li><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unique identifier in format “{timestamp}_{random_chars}”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id1</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id1</span><span class="p">)</span>
+<span class="go">&#39;2025Y-05M-31D-12h30m45s_a3Bc9xY2&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id2</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">(</span><span class="n">time_format</span><span class="o">=</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">N</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id2</span><span class="p">)</span>
+<span class="go">&#39;20250531_xY9a&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># For experiment tracking</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">exp_id</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">save_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;results/experiment_</span><span class="si">{</span><span class="n">exp_id</span><span class="si">}</span><span class="s2">.pkl&quot;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.gen_timestamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">gen_timestamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_gen_timestamp.html#gen_timestamp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.gen_timestamp" title="Link to this definition"></a></dt>
+<dd><p>Generate a timestamp string for file naming.</p>
+<p>Returns a timestamp in the format YYYY-MMDD-HHMM, suitable for
+creating unique filenames or version identifiers.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Timestamp string in format “YYYY-MMDD-HHMM”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">timestamp</span> <span class="o">=</span> <span class="n">gen_timestamp</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">timestamp</span><span class="p">)</span>
+<span class="go">&#39;2025-0531-1230&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">filename</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;experiment_</span><span class="si">{</span><span class="n">gen_timestamp</span><span class="p">()</span><span class="si">}</span><span class="s2">.csv&quot;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+<span class="go">&#39;experiment_2025-0531-1230.csv&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.timestamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">timestamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.repro.timestamp" title="Link to this definition"></a></dt>
+<dd><p>Generate a timestamp string for file naming.</p>
+<p>Returns a timestamp in the format YYYY-MMDD-HHMM, suitable for
+creating unique filenames or version identifiers.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Timestamp string in format “YYYY-MMDD-HHMM”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">timestamp</span> <span class="o">=</span> <span class="n">gen_timestamp</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">timestamp</span><span class="p">)</span>
+<span class="go">&#39;2025-0531-1230&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">filename</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;experiment_</span><span class="si">{</span><span class="n">gen_timestamp</span><span class="p">()</span><span class="si">}</span><span class="s2">.csv&quot;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+<span class="go">&#39;experiment_2025-0531-1230.csv&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.hash_array">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">hash_array</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">array_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_hash_array.html#hash_array"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.hash_array" title="Link to this definition"></a></dt>
+<dd><p>Generate hash for array data.</p>
+<p>Creates a deterministic hash for numpy arrays, useful for
+verifying data integrity and reproducibility.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>array_data</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Array to hash</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>16-character hash string</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">])</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash1</span> <span class="o">=</span> <span class="n">hash_array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash2</span> <span class="o">=</span> <span class="n">hash_array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash1</span> <span class="o">==</span> <span class="n">hash2</span>
+<span class="go">True</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">RandomStateManager</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager" title="Link to this definition"></a></dt>
+<dd><p>Simple, robust random state manager for scientific computing.</p>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">RandomStateManager</span>
+<span class="gp">&gt;&gt;&gt;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Method 1: Direct usage</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">rng</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Verify reproducibility</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;my_data&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize with automatic module detection.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.get_np_generator">
+<span class="sig-name descname"><span class="pre">get_np_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_np_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.get_np_generator" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named NumPy random generator.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name (e.g., “data”, “model”, “augment”)</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Independent NumPy random generator</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://numpy.org/doc/stable/reference/random/generator.html#numpy.random.Generator" title="(in NumPy v2.4)">numpy.random.Generator</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">values</span> <span class="o">=</span> <span class="n">gen</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">perm</span> <span class="o">=</span> <span class="n">gen</span><span class="o">.</span><span class="n">permutation</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.__call__">
+<span class="sig-name descname"><span class="pre">__call__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.__call__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.__call__" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named NumPy random generator.</p>
+<p>This is a backward compatibility wrapper for get_np_generator().
+Consider using get_np_generator() directly for clarity.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to show deprecation warning</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>NumPy random generator with deterministic seed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://numpy.org/doc/stable/reference/random/generator.html#numpy.random.Generator" title="(in NumPy v2.4)">numpy.random.Generator</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.verify">
+<span class="sig-name descname"><span class="pre">verify</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">obj</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.verify"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.verify" title="Link to this definition"></a></dt>
+<dd><p>Verify object matches cached hash (detects broken reproducibility).</p>
+<p>First call: caches the object’s hash
+Later calls: verifies object matches cached hash</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>obj</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Object to verify (array, tensor, data, model weights, etc.)
+Supports: numpy arrays, torch tensors, tf tensors, jax arrays,
+lists, dicts, pandas dataframes, and basic types</p></li>
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Cache name. Auto-generated if not provided.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>True if matches cache (or first call), False if different</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">generate_data</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># First run: caches</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Next run:</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># Verifies match</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.checkpoint">
+<span class="sig-name descname"><span class="pre">checkpoint</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'checkpoint'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.checkpoint"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.checkpoint" title="Link to this definition"></a></dt>
+<dd><p>Save current state of all generators.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.restore">
+<span class="sig-name descname"><span class="pre">restore</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">checkpoint</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.restore"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.restore" title="Link to this definition"></a></dt>
+<dd><p>Restore from checkpoint.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.temporary_seed">
+<span class="sig-name descname"><span class="pre">temporary_seed</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.temporary_seed"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.temporary_seed" title="Link to this definition"></a></dt>
+<dd><p>Context manager for temporary seed change.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.get_sklearn_random_state">
+<span class="sig-name descname"><span class="pre">get_sklearn_random_state</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_sklearn_random_state"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.get_sklearn_random_state" title="Link to this definition"></a></dt>
+<dd><p>Get a random state for scikit-learn.</p>
+<p>Scikit-learn uses integers for random_state parameter.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Random state integer for sklearn</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)">int</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">sklearn.model_selection</span><span class="w"> </span><span class="kn">import</span> <span class="n">train_test_split</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">X_train</span><span class="p">,</span> <span class="n">X_test</span> <span class="o">=</span> <span class="n">train_test_split</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="n">X</span><span class="p">,</span> <span class="n">test_size</span><span class="o">=</span><span class="mf">0.2</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">random_state</span><span class="o">=</span><span class="n">rng</span><span class="o">.</span><span class="n">get_sklearn_random_state</span><span class="p">(</span><span class="s2">&quot;split&quot;</span><span class="p">)</span>
+<span class="gp">... </span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.get_torch_generator">
+<span class="sig-name descname"><span class="pre">get_torch_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_torch_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.get_torch_generator" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named PyTorch generator.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>PyTorch generator with deterministic seed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.pytorch.org/docs/stable/generated/torch.Generator.html#torch.Generator" title="(in PyTorch v2.12)">torch.Generator</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_torch_generator</span><span class="p">(</span><span class="s2">&quot;model&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">torch</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span> <span class="mi">5</span><span class="p">,</span> <span class="n">generator</span><span class="o">=</span><span class="n">gen</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.get_generator">
+<span class="sig-name descname"><span class="pre">get_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.get_generator" title="Link to this definition"></a></dt>
+<dd><p>Alias for get_np_generator for compatibility.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.repro.RandomStateManager.clear_cache">
+<span class="sig-name descname"><span class="pre">clear_cache</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">patterns</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.clear_cache"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.RandomStateManager.clear_cache" title="Link to this definition"></a></dt>
+<dd><p>Clear verification cache files.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>patterns</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific cache patterns to clear. If None, clears all.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Number of cache files removed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.get">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">get</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#get"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.get" title="Link to this definition"></a></dt>
+<dd><p>Get or create the global RandomStateManager instance.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to print status messages (default: False)</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Global instance</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="rng.html#scitex.rng.RandomStateManager" title="scitex_repro._RandomStateManager.RandomStateManager"><code class="xref py py-class docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">get</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">get</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">rng</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.reset">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">reset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#reset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.reset" title="Link to this definition"></a></dt>
+<dd><p>Reset global RandomStateManager with new seed.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>seed</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – New seed value</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to print status messages (default: False)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>New global instance</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="rng.html#scitex.rng.RandomStateManager" title="scitex_repro._RandomStateManager.RandomStateManager"><code class="xref py py-class docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">reset</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">reset</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">123</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.repro.fix_seeds">
+<span class="sig-prename descclassname"><span class="pre">scitex.repro.</span></span><span class="sig-name descname"><span class="pre">fix_seeds</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">os</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">random</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">np</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">torch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">jax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro.html#fix_seeds"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.repro.fix_seeds" title="Link to this definition"></a></dt>
+<dd><p>Deprecated: Use RandomStateManager instead.</p>
+<p>This function maintains backward compatibility with the old fix_seeds API.</p>
+</dd></dl>
+
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+   
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diff --git a/src/scitex/_sphinx_html/source/api/resource.html b/src/scitex/_sphinx_html/source/api/resource.html
new file mode 100644
index 000000000..cf9bf6013
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/resource.html
@@ -0,0 +1,888 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>resource Module (stx.resource) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/resource.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.resource">
+<span id="resource-module-stx-resource"></span><h1>resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)<a class="headerlink" href="#module-scitex.resource" title="Link to this heading"></a></h1>
+<p>scitex-resource — system resource info, monitoring, RAM limit (standalone).</p>
+<p>Public API is loaded lazily via PEP 562 <cite>__getattr__</cite> so <cite>import
+scitex_resource</cite> stays fast (&lt;100ms cold-start) — Click runs the CLI
+program once per Tab press for completion, and pulling in
+matplotlib/psutil/yaml at top-level made that path ~2s slow.</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.get_host_config">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">get_host_config</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_host.html#get_host_config"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.get_host_config" title="Link to this definition"></a></dt>
+<dd><p>Return the <code class="docutils literal notranslate"><span class="pre">host:</span></code> block from config (falls back to <code class="docutils literal notranslate"><span class="pre">machine:</span></code>).</p>
+<p>If a config file declares only the legacy <code class="docutils literal notranslate"><span class="pre">machine:</span></code> key, a
+one-time DeprecationWarning is emitted and that block is returned.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.get_host_name">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">get_host_name</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_host.html#get_host_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.get_host_name" title="Link to this definition"></a></dt>
+<dd><p>Return the canonical host name.</p>
+<p>See module docstring for the resolution cascade. Always returns a
+non-empty string — the short hostname is the last-resort fallback.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.load_config">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">load_config</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_host.html#load_config"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.load_config" title="Link to this definition"></a></dt>
+<dd><p>Return the merged config dict — project file overrides user file.</p>
+<p>Empty dict if no config files exist or PyYAML isn’t installed.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.get_machine_config">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">get_machine_config</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_machine.html#get_machine_config"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.get_machine_config" title="Link to this definition"></a></dt>
+<dd><p>Deprecated alias for <a class="reference internal" href="#scitex.resource.get_host_config" title="scitex.resource.get_host_config"><code class="xref py py-func docutils literal notranslate"><span class="pre">get_host_config()</span></code></a>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.get_machine_name">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">get_machine_name</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_machine.html#get_machine_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.get_machine_name" title="Link to this definition"></a></dt>
+<dd><p>Deprecated alias for <a class="reference internal" href="#scitex.resource.get_host_name" title="scitex.resource.get_host_name"><code class="xref py py-func docutils literal notranslate"><span class="pre">get_host_name()</span></code></a>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.get_metrics">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">get_metrics</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">gpu</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_specs/_metrics.html#get_metrics"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.get_metrics" title="Link to this definition"></a></dt>
+<dd><p>Return a flat dict of current system metrics suitable for heartbeats.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>gpu</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – When <code class="docutils literal notranslate"><span class="pre">True</span></code> (default) probe NVIDIA GPUs via <code class="docutils literal notranslate"><span class="pre">nvidia-smi</span></code>. Set to
+<code class="docutils literal notranslate"><span class="pre">False</span></code> on hot paths to skip the ~200 ms shellout when you know
+there’s no GPU or when you cache GPU info separately.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>See module docstring for the full key list and contract.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.get_processor_usages">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">get_processor_usages</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_specs/_processor_usages.html#get_processor_usages"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.get_processor_usages" title="Link to this definition"></a></dt>
+<dd><p>Gets current system resource usage statistics.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Resource usage data with columns:
+- Timestamp: Timestamp
+- CPU [%]: CPU utilization
+- RAM [GiB]: RAM usage
+- GPU [%]: GPU utilization
+- VRAM [GiB]: VRAM usage</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://pandas.pydata.org/docs/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v3.0.3)"><code class="xref py py-class docutils literal notranslate"><span class="pre">DataFrame</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">df</span> <span class="o">=</span> <span class="n">get_proccessor_usages</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">df</span><span class="p">)</span>
+<span class="go">             Timestamp  CPU [%]  RAM [GiB]  GPU [%]  VRAM [GiB]</span>
+<span class="go">0  2024-11-04 10:30:15    25.3      8.2     65.0        4.5</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.get_specs">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">get_specs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">system</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cpu</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">gpu</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disk</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">network</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">yaml</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_specs/_specs.html#get_specs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.get_specs" title="Link to this definition"></a></dt>
+<dd><p>Collects and returns system specifications including system information, CPU, GPU, disk, and network details.</p>
+<p>This function gathers various pieces of system information based on the parameters provided. It can return the data in a dictionary format or print it out based on the verbose flag. Additionally, there’s an option to format the output as YAML.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>system</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a>) – If True, collects system-wide information such as OS and node name. Default is True.</p></li>
+<li><p><strong>boot_time</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a>) – If True, collects system boot time. Currently commented out in the implementation. Default is True.</p></li>
+<li><p><strong>cpu</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a>) – If True, collects CPU-specific information including frequency and usage. Default is True.</p></li>
+<li><p><strong>gpu</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a>) – If True, collects GPU-specific information. Default is True.</p></li>
+<li><p><strong>disk</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a>) – If True, collects disk usage information for all partitions. Default is True.</p></li>
+<li><p><strong>network</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a>) – If True, collects network interface and traffic information. Default is True.</p></li>
+<li><p><strong>verbose</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a>) – If True, prints the collected information using pprint. Default is False.</p></li>
+<li><p><strong>yaml</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><em>bool</em></a>) – If True, formats the collected information as YAML. This modifies the return type to a YAML formatted string. Default is False.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>By default, returns a dictionary containing the collected system specifications. If <cite>yaml</cite> is True, returns a YAML-formatted string instead.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.14)">dict</a> or <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<ul class="simple">
+<li><p>The actual collection of system, CPU, GPU, disk, and network information depends on the availability of corresponding libraries and access permissions.</p></li>
+<li><p>The <cite>boot_time</cite> argument is currently not used as its corresponding code is commented out.</p></li>
+<li><p>The function uses global variables and imports within its scope, which might affect its reusability and testability.</p></li>
+</ul>
+</div>
+<div class="admonition-example admonition">
+<p class="admonition-title">Example</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">specs</span> <span class="o">=</span> <span class="n">get_specs</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="go">This will print and return the system specifications based on the default parameters.</span>
+</pre></div>
+</div>
+</div>
+<dl class="simple">
+<dt>Dependencies:</dt><dd><ul class="simple">
+<li><p>This function depends on the <cite>scitex</cite> library for accessing system information and formatting output. Ensure this library is installed and properly configured.</p></li>
+<li><p>Python standard libraries: <cite>datetime</cite>, <cite>platform</cite>, <cite>psutil</cite>, <cite>yaml</cite> (optional for YAML output).</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Raises<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#PermissionError" title="(in Python v3.14)"><strong>PermissionError</strong></a> – If the function lacks necessary permissions to access certain system information, especially disk and network details.</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.log_processor_usages">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">log_processor_usages</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/tmp/scitex/processor_usages.csv'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">limit_min</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">30</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">interval_s</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">init</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">background</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_resource/_log_processor_usages.html#log_processor_usages"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.resource.log_processor_usages" title="Link to this definition"></a></dt>
+<dd><p>Logs system resource usage over time.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Path to save the log file</p></li>
+<li><p><strong>limit_min</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a></span>) – Monitoring duration in minutes</p></li>
+<li><p><strong>interval_s</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a></span>) – Sampling interval in seconds</p></li>
+<li><p><strong>init</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to clear existing log file</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to print the log</p></li>
+<li><p><strong>background</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to run in background</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Process object if background=True, None otherwise</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/multiprocessing.html#multiprocessing.Process" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Process</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.resource.main">
+<span class="sig-prename descclassname"><span class="pre">scitex.resource.</span></span><span class="sig-name descname"><span class="pre">main</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/tmp/scitex/processor_usages.csv'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">limit_min</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">30</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">interval_s</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">init</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">background</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.resource.main" title="Link to this definition"></a></dt>
+<dd><p>Logs system resource usage over time.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>path</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Path to save the log file</p></li>
+<li><p><strong>limit_min</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a></span>) – Monitoring duration in minutes</p></li>
+<li><p><strong>interval_s</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code></a></span>) – Sampling interval in seconds</p></li>
+<li><p><strong>init</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to clear existing log file</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to print the log</p></li>
+<li><p><strong>background</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to run in background</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Process object if background=True, None otherwise</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/multiprocessing.html#multiprocessing.Process" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Process</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+          SphinxRtdTheme.Navigation.enable(true);
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/rng.html b/src/scitex/_sphinx_html/source/api/rng.html
new file mode 100644
index 000000000..7e7797af0
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/rng.html
@@ -0,0 +1,1133 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>rng Module (stx.rng) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
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+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
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+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
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+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/rng.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.rng">
+<span id="rng-module-stx-rng"></span><h1>rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)<a class="headerlink" href="#module-scitex.rng" title="Link to this heading"></a></h1>
+<p>scitex-repro — Reproducibility utilities for scientific computing.</p>
+<p>Provides tools for reproducible scientific computing:
+- Random state management (RandomStateManager)
+- ID generation (gen_ID)
+- Timestamp generation (gen_timestamp)
+- Array hashing (hash_array)</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.rng.gen_ID">
+<span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">gen_ID</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">time_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'%YY-%mM-%dD-%Hh%Mm%Ss'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">N</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">8</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.rng.gen_ID" title="Link to this definition"></a></dt>
+<dd><p>Generate a unique identifier with timestamp and random characters.</p>
+<p>Creates a unique ID by combining a formatted timestamp with random
+alphanumeric characters. Useful for creating unique experiment IDs,
+run identifiers, or temporary file names.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>time_format</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Format string for timestamp portion. Default is “%YY-%mM-%dD-%Hh%Mm%Ss”
+which produces “2025Y-05M-31D-12h30m45s” format.</p></li>
+<li><p><strong>N</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><em>int</em></a><em>, </em><em>optional</em>) – Number of random characters to append. Default is 8.</p></li>
+<li><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unique identifier in format “{timestamp}_{random_chars}”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id1</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id1</span><span class="p">)</span>
+<span class="go">&#39;2025Y-05M-31D-12h30m45s_a3Bc9xY2&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id2</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">(</span><span class="n">time_format</span><span class="o">=</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">N</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id2</span><span class="p">)</span>
+<span class="go">&#39;20250531_xY9a&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># For experiment tracking</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">exp_id</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">save_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;results/experiment_</span><span class="si">{</span><span class="n">exp_id</span><span class="si">}</span><span class="s2">.pkl&quot;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.rng.gen_id">
+<span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">gen_id</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">time_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'%YY-%mM-%dD-%Hh%Mm%Ss'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">N</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">8</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_gen_ID.html#gen_id"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.gen_id" title="Link to this definition"></a></dt>
+<dd><p>Generate a unique identifier with timestamp and random characters.</p>
+<p>Creates a unique ID by combining a formatted timestamp with random
+alphanumeric characters. Useful for creating unique experiment IDs,
+run identifiers, or temporary file names.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>time_format</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><em>str</em></a><em>, </em><em>optional</em>) – Format string for timestamp portion. Default is “%YY-%mM-%dD-%Hh%Mm%Ss”
+which produces “2025Y-05M-31D-12h30m45s” format.</p></li>
+<li><p><strong>N</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><em>int</em></a><em>, </em><em>optional</em>) – Number of random characters to append. Default is 8.</p></li>
+<li><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Unique identifier in format “{timestamp}_{random_chars}”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id1</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id1</span><span class="p">)</span>
+<span class="go">&#39;2025Y-05M-31D-12h30m45s_a3Bc9xY2&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">id2</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">(</span><span class="n">time_format</span><span class="o">=</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">N</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">id2</span><span class="p">)</span>
+<span class="go">&#39;20250531_xY9a&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># For experiment tracking</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">exp_id</span> <span class="o">=</span> <span class="n">gen_id</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">save_path</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;results/experiment_</span><span class="si">{</span><span class="n">exp_id</span><span class="si">}</span><span class="s2">.pkl&quot;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.rng.gen_timestamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">gen_timestamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_gen_timestamp.html#gen_timestamp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.gen_timestamp" title="Link to this definition"></a></dt>
+<dd><p>Generate a timestamp string for file naming.</p>
+<p>Returns a timestamp in the format YYYY-MMDD-HHMM, suitable for
+creating unique filenames or version identifiers.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Timestamp string in format “YYYY-MMDD-HHMM”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">timestamp</span> <span class="o">=</span> <span class="n">gen_timestamp</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">timestamp</span><span class="p">)</span>
+<span class="go">&#39;2025-0531-1230&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">filename</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;experiment_</span><span class="si">{</span><span class="n">gen_timestamp</span><span class="p">()</span><span class="si">}</span><span class="s2">.csv&quot;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+<span class="go">&#39;experiment_2025-0531-1230.csv&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.rng.timestamp">
+<span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">timestamp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">now_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#scitex.rng.timestamp" title="Link to this definition"></a></dt>
+<dd><p>Generate a timestamp string for file naming.</p>
+<p>Returns a timestamp in the format YYYY-MMDD-HHMM, suitable for
+creating unique filenames or version identifiers.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>now_fn</strong> (<em>callable</em><em>, </em><em>optional</em>) – Zero-argument callable returning a <cite>datetime</cite>-like object with
+<cite>.strftime()</cite>. Defaults to <cite>datetime.now</cite>. Injection point for
+deterministic tests — pass a fake that returns a fixed datetime
+instead of mocking <cite>datetime</cite> globally.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Timestamp string in format “YYYY-MMDD-HHMM”</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)">str</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">timestamp</span> <span class="o">=</span> <span class="n">gen_timestamp</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">timestamp</span><span class="p">)</span>
+<span class="go">&#39;2025-0531-1230&#39;</span>
+</pre></div>
+</div>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">filename</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;experiment_</span><span class="si">{</span><span class="n">gen_timestamp</span><span class="p">()</span><span class="si">}</span><span class="s2">.csv&quot;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
+<span class="go">&#39;experiment_2025-0531-1230.csv&#39;</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.rng.hash_array">
+<span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">hash_array</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">array_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_hash_array.html#hash_array"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.hash_array" title="Link to this definition"></a></dt>
+<dd><p>Generate hash for array data.</p>
+<p>Creates a deterministic hash for numpy arrays, useful for
+verifying data integrity and reproducibility.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>array_data</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a></span>) – Array to hash</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>16-character hash string</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">])</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash1</span> <span class="o">=</span> <span class="n">hash_array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash2</span> <span class="o">=</span> <span class="n">hash_array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">hash1</span> <span class="o">==</span> <span class="n">hash2</span>
+<span class="go">True</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">RandomStateManager</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Simple, robust random state manager for scientific computing.</p>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">RandomStateManager</span>
+<span class="gp">&gt;&gt;&gt;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Method 1: Direct usage</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">rng</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt;</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Verify reproducibility</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;my_data&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize with automatic module detection.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.get_np_generator">
+<span class="sig-name descname"><span class="pre">get_np_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_np_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.get_np_generator" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named NumPy random generator.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name (e.g., “data”, “model”, “augment”)</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Independent NumPy random generator</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://numpy.org/doc/stable/reference/random/generator.html#numpy.random.Generator" title="(in NumPy v2.4)">numpy.random.Generator</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_np_generator</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">values</span> <span class="o">=</span> <span class="n">gen</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">perm</span> <span class="o">=</span> <span class="n">gen</span><span class="o">.</span><span class="n">permutation</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.__call__">
+<span class="sig-name descname"><span class="pre">__call__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.__call__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.__call__" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named NumPy random generator.</p>
+<p>This is a backward compatibility wrapper for get_np_generator().
+Consider using get_np_generator() directly for clarity.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to show deprecation warning</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>NumPy random generator with deterministic seed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://numpy.org/doc/stable/reference/random/generator.html#numpy.random.Generator" title="(in NumPy v2.4)">numpy.random.Generator</a></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.verify">
+<span class="sig-name descname"><span class="pre">verify</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">obj</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.verify"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.verify" title="Link to this definition"></a></dt>
+<dd><p>Verify object matches cached hash (detects broken reproducibility).</p>
+<p>First call: caches the object’s hash
+Later calls: verifies object matches cached hash</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>obj</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a></span>) – Object to verify (array, tensor, data, model weights, etc.)
+Supports: numpy arrays, torch tensors, tf tensors, jax arrays,
+lists, dicts, pandas dataframes, and basic types</p></li>
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Cache name. Auto-generated if not provided.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>True if matches cache (or first call), False if different</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">generate_data</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># First run: caches</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Next run:</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span><span class="o">.</span><span class="n">verify</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;train_data&quot;</span><span class="p">)</span>  <span class="c1"># Verifies match</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.checkpoint">
+<span class="sig-name descname"><span class="pre">checkpoint</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'checkpoint'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.checkpoint"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.checkpoint" title="Link to this definition"></a></dt>
+<dd><p>Save current state of all generators.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.restore">
+<span class="sig-name descname"><span class="pre">restore</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">checkpoint</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.restore"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.restore" title="Link to this definition"></a></dt>
+<dd><p>Restore from checkpoint.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.temporary_seed">
+<span class="sig-name descname"><span class="pre">temporary_seed</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.temporary_seed"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.temporary_seed" title="Link to this definition"></a></dt>
+<dd><p>Context manager for temporary seed change.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.get_sklearn_random_state">
+<span class="sig-name descname"><span class="pre">get_sklearn_random_state</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_sklearn_random_state"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.get_sklearn_random_state" title="Link to this definition"></a></dt>
+<dd><p>Get a random state for scikit-learn.</p>
+<p>Scikit-learn uses integers for random_state parameter.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Random state integer for sklearn</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)">int</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">sklearn.model_selection</span><span class="w"> </span><span class="kn">import</span> <span class="n">train_test_split</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">X_train</span><span class="p">,</span> <span class="n">X_test</span> <span class="o">=</span> <span class="n">train_test_split</span><span class="p">(</span>
+<span class="gp">... </span>    <span class="n">X</span><span class="p">,</span> <span class="n">test_size</span><span class="o">=</span><span class="mf">0.2</span><span class="p">,</span>
+<span class="gp">... </span>    <span class="n">random_state</span><span class="o">=</span><span class="n">rng</span><span class="o">.</span><span class="n">get_sklearn_random_state</span><span class="p">(</span><span class="s2">&quot;split&quot;</span><span class="p">)</span>
+<span class="gp">... </span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.get_torch_generator">
+<span class="sig-name descname"><span class="pre">get_torch_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_torch_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.get_torch_generator" title="Link to this definition"></a></dt>
+<dd><p>Get or create a named PyTorch generator.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span>) – Generator name</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>PyTorch generator with deterministic seed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><a class="reference external" href="https://docs.pytorch.org/docs/stable/generated/torch.Generator.html#torch.Generator" title="(in PyTorch v2.12)">torch.Generator</a></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">RandomStateManager</span><span class="p">(</span><span class="mi">42</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">gen</span> <span class="o">=</span> <span class="n">rng</span><span class="o">.</span><span class="n">get_torch_generator</span><span class="p">(</span><span class="s2">&quot;model&quot;</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">torch</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span> <span class="mi">5</span><span class="p">,</span> <span class="n">generator</span><span class="o">=</span><span class="n">gen</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.get_generator">
+<span class="sig-name descname"><span class="pre">get_generator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.get_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.get_generator" title="Link to this definition"></a></dt>
+<dd><p>Alias for get_np_generator for compatibility.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.rng.RandomStateManager.clear_cache">
+<span class="sig-name descname"><span class="pre">clear_cache</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">patterns</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#RandomStateManager.clear_cache"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.RandomStateManager.clear_cache" title="Link to this definition"></a></dt>
+<dd><p>Clear verification cache files.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>patterns</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a> | <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific cache patterns to clear. If None, clears all.</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Number of cache files removed</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.rng.get">
+<span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">get</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#get"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.get" title="Link to this definition"></a></dt>
+<dd><p>Get or create the global RandomStateManager instance.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to print status messages (default: False)</p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>Global instance</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.rng.RandomStateManager" title="scitex_repro._RandomStateManager.RandomStateManager"><code class="xref py py-class docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">get</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">get</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">data</span> <span class="o">=</span> <span class="n">rng</span><span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="mi">100</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.rng.reset">
+<span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">reset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro/_RandomStateManager.html#reset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.reset" title="Link to this definition"></a></dt>
+<dd><p>Reset global RandomStateManager with new seed.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>seed</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – New seed value</p></li>
+<li><p><strong>verbose</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Whether to print status messages (default: False)</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>New global instance</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.rng.RandomStateManager" title="scitex_repro._RandomStateManager.RandomStateManager"><code class="xref py py-class docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex_repro</span><span class="w"> </span><span class="kn">import</span> <span class="n">reset</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">rng</span> <span class="o">=</span> <span class="n">reset</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="mi">123</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.rng.fix_seeds">
+<span class="sig-prename descclassname"><span class="pre">scitex.rng.</span></span><span class="sig-name descname"><span class="pre">fix_seeds</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">42</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">os</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">random</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">np</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">torch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">jax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_repro.html#fix_seeds"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.rng.fix_seeds" title="Link to this definition"></a></dt>
+<dd><p>Deprecated: Use RandomStateManager instead.</p>
+<p>This function maintains backward compatibility with the old fix_seeds API.</p>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+          SphinxRtdTheme.Navigation.enable(true);
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diff --git a/src/scitex/_sphinx_html/source/api/schema.html b/src/scitex/_sphinx_html/source/api/schema.html
new file mode 100644
index 000000000..0ecbd7195
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/schema.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>schema Module (stx.schema) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
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+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+            SciTeX
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
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+             
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+<span id="schema-module-stx-schema"></span><h1>schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)<a class="headerlink" href="#module-scitex.schema" title="Link to this heading"></a></h1>
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diff --git a/src/scitex/_sphinx_html/source/api/scholar.html b/src/scitex/_sphinx_html/source/api/scholar.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/scholar.html
@@ -0,0 +1,794 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Scholar Module (stx.scholar) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
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+</head>
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+    <input type="hidden" name="check_keywords" value="yes" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
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+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/scholar.rst" class="fa fa-github"> Edit on GitHub</a>
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+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="scholar-module-stx-scholar">
+<h1>Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)<a class="headerlink" href="#scholar-module-stx-scholar" title="Link to this heading"></a></h1>
+<p>Literature management: search papers, download PDFs, enrich BibTeX,
+and organize a local library across multiple projects.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.scholar</span><span class="w"> </span><span class="kn">import</span> <span class="n">Scholar</span>
+
+<span class="n">scholar</span> <span class="o">=</span> <span class="n">Scholar</span><span class="p">(</span><span class="n">project</span><span class="o">=</span><span class="s2">&quot;my_research&quot;</span><span class="p">)</span>
+
+<span class="c1"># Load and enrich BibTeX</span>
+<span class="n">papers</span> <span class="o">=</span> <span class="n">scholar</span><span class="o">.</span><span class="n">load_bibtex</span><span class="p">(</span><span class="s2">&quot;references.bib&quot;</span><span class="p">)</span>
+<span class="n">enriched</span> <span class="o">=</span> <span class="n">scholar</span><span class="o">.</span><span class="n">enrich_papers</span><span class="p">(</span><span class="n">papers</span><span class="p">)</span>
+<span class="c1"># Adds: DOIs, abstracts, citation counts, impact factors</span>
+
+<span class="c1"># Save to library and export</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">save_papers_to_library</span><span class="p">(</span><span class="n">enriched</span><span class="p">)</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">save_papers_as_bibtex</span><span class="p">(</span><span class="n">enriched</span><span class="p">,</span> <span class="s2">&quot;enriched.bib&quot;</span><span class="p">)</span>
+
+<span class="c1"># Search your library</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">scholar</span><span class="o">.</span><span class="n">search_library</span><span class="p">(</span><span class="s2">&quot;neural oscillations&quot;</span><span class="p">)</span>
+
+<span class="c1"># Download PDFs</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">download_pdfs</span><span class="p">(</span><span class="n">dois</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-usage">
+<h2>CLI Usage<a class="headerlink" href="#cli-usage" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Full pipeline from BibTeX</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>bibtex<span class="w"> </span>refs.bib<span class="w"> </span>--project<span class="w"> </span>myresearch<span class="w"> </span>--num-workers<span class="w"> </span><span class="m">8</span>
+
+<span class="c1"># Search papers</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>search<span class="w"> </span><span class="s2">&quot;deep learning EEG&quot;</span>
+
+<span class="c1"># Download PDFs</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>download<span class="w"> </span>--doi<span class="w"> </span><span class="m">10</span>.1038/nature12373
+
+<span class="c1"># Institutional authentication</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>auth<span class="w"> </span>--method<span class="w"> </span>openathens
+scitex<span class="w"> </span>scholar<span class="w"> </span>auth<span class="w"> </span>--method<span class="w"> </span>shibboleth<span class="w"> </span>--institution<span class="w"> </span><span class="s2">&quot;MIT&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="data-sources">
+<h2>Data Sources<a class="headerlink" href="#data-sources" title="Link to this heading"></a></h2>
+<p>Searches and enriches from:</p>
+<ul class="simple">
+<li><p><strong>CrossRef</strong> (167M+ papers) – DOI resolution, citation counts</p></li>
+<li><p><strong>Semantic Scholar</strong> – Abstracts, references, influence scores</p></li>
+<li><p><strong>PubMed</strong> – Biomedical literature</p></li>
+<li><p><strong>arXiv</strong> – Preprints</p></li>
+<li><p><strong>OpenAlex</strong> (284M+ works) – Open metadata</p></li>
+</ul>
+</section>
+<section id="key-classes">
+<h2>Key Classes<a class="headerlink" href="#key-classes" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">Scholar</span></code> – Main entry point (search, enrich, download, organize)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">Paper</span></code> – Type-safe metadata container (Pydantic model)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">Papers</span></code> – Collection with filtering, sorting, and export</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScholarConfig</span></code> – YAML-based configuration</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ScholarLibrary</span></code> – Local library storage and caching</p></li>
+</ul>
+</section>
+<section id="paper-metadata">
+<h2>Paper Metadata<a class="headerlink" href="#paper-metadata" title="Link to this heading"></a></h2>
+<p>Each <code class="docutils literal notranslate"><span class="pre">Paper</span></code> contains structured metadata sections:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">basic</span>          <span class="c1"># title, authors, year, abstract, keywords</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">id</span>             <span class="c1"># DOI, arXiv, PMID, Semantic Scholar ID</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">publication</span>    <span class="c1"># journal, impact factor, volume, issue</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">citation_count</span> <span class="c1"># total + yearly breakdown (2015--2024)</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">url</span>            <span class="c1"># DOI URL, publisher, arXiv, PDFs</span>
+<span class="n">paper</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">access</span>         <span class="c1"># open access status, license</span>
+</pre></div>
+</div>
+</section>
+<section id="filtering-and-sorting">
+<h2>Filtering and Sorting<a class="headerlink" href="#filtering-and-sorting" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Criteria-based filtering</span>
+<span class="n">recent</span> <span class="o">=</span> <span class="n">papers</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">year_min</span><span class="o">=</span><span class="mi">2020</span><span class="p">,</span> <span class="n">has_doi</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="n">elite</span> <span class="o">=</span> <span class="n">papers</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">min_impact_factor</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">min_citations</span><span class="o">=</span><span class="mi">500</span><span class="p">)</span>
+
+<span class="c1"># Lambda filtering</span>
+<span class="n">custom</span> <span class="o">=</span> <span class="n">papers</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">p</span><span class="p">:</span> <span class="s2">&quot;EEG&quot;</span> <span class="ow">in</span> <span class="p">(</span><span class="n">p</span><span class="o">.</span><span class="n">metadata</span><span class="o">.</span><span class="n">basic</span><span class="o">.</span><span class="n">title</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span><span class="p">))</span>
+
+<span class="c1"># Sorting</span>
+<span class="n">papers</span><span class="o">.</span><span class="n">sort_by</span><span class="p">(</span><span class="s2">&quot;year&quot;</span><span class="p">,</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="n">papers</span><span class="o">.</span><span class="n">sort_by</span><span class="p">(</span><span class="s2">&quot;citation_count&quot;</span><span class="p">,</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+<span class="c1"># Chaining</span>
+<span class="n">top_recent</span> <span class="o">=</span> <span class="n">papers</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">year_min</span><span class="o">=</span><span class="mi">2020</span><span class="p">)</span><span class="o">.</span><span class="n">sort_by</span><span class="p">(</span><span class="s2">&quot;citation_count&quot;</span><span class="p">,</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="project-organization">
+<h2>Project Organization<a class="headerlink" href="#project-organization" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">scholar</span> <span class="o">=</span> <span class="n">Scholar</span><span class="p">(</span><span class="n">project</span><span class="o">=</span><span class="s2">&quot;review_paper&quot;</span><span class="p">)</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">list_projects</span><span class="p">()</span>
+<span class="n">papers</span> <span class="o">=</span> <span class="n">scholar</span><span class="o">.</span><span class="n">load_project</span><span class="p">()</span>
+
+<span class="c1"># Export to multiple formats</span>
+<span class="n">scholar</span><span class="o">.</span><span class="n">save_papers_as_bibtex</span><span class="p">(</span><span class="n">papers</span><span class="p">,</span> <span class="s2">&quot;output.bib&quot;</span><span class="p">)</span>
+<span class="n">papers</span><span class="o">.</span><span class="n">to_dataframe</span><span class="p">()</span>  <span class="c1"># pandas DataFrame</span>
+</pre></div>
+</div>
+</section>
+<section id="storage-architecture">
+<h2>Storage Architecture<a class="headerlink" href="#storage-architecture" title="Link to this heading"></a></h2>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>~/.scitex/scholar/library/
++-- MASTER/                     # Centralized master storage
+|   +-- 8DIGIT01/              # Hash-based unique ID from DOI
+|   |   +-- metadata.json
+|   |   +-- paper.pdf
++-- project_name/               # Project-specific symlinks
+    +-- Author-Year-Journal -&gt; ../MASTER/8DIGIT01
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.scholar">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.scholar" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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diff --git a/src/scitex/_sphinx_html/source/api/security.html b/src/scitex/_sphinx_html/source/api/security.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/security.html
@@ -0,0 +1,774 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>security Module (stx.security) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
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+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/security.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.security">
+<span id="security-module-stx-security"></span><h1>security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)<a class="headerlink" href="#module-scitex.security" title="Link to this heading"></a></h1>
+<p>scitex-security — GitHub security-alert utilities (standalone).</p>
+<dl>
+<dt>Usage:</dt><dd><p>from scitex_security import check_github_alerts</p>
+<p>alerts = check_github_alerts()
+if alerts:</p>
+<blockquote>
+<div><p>print(f”Found {len(alerts)} security alerts!”)</p>
+</div></blockquote>
+</dd>
+</dl>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.security.check_github_alerts">
+<span class="sig-prename descclassname"><span class="pre">scitex.security.</span></span><span class="sig-name descname"><span class="pre">check_github_alerts</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">repo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="keyword-only-separator o"><abbr title="Keyword-only parameters separator (PEP 3102)"><span class="pre">*</span></abbr></span></em>, <em class="sig-param"><span class="n"><span class="pre">auth_check</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">secrets_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dependabot_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">code_scanning_fn</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_security/github.html#check_github_alerts"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.security.check_github_alerts" title="Link to this definition"></a></dt>
+<dd><p>Check all GitHub security alerts.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>repo</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Repository in format ‘owner/repo’. If None, uses current repo.</p></li>
+<li><p><strong>auth_check</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[], <a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>]]</span>) – <code class="docutils literal notranslate"><span class="pre">check_gh_auth</span></code>-shaped callable. Override in tests.</p></li>
+<li><p><strong>secrets_fn</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>]</span>) – <code class="docutils literal notranslate"><span class="pre">get_secret_alerts</span></code>-shaped callable. Override in tests.</p></li>
+<li><p><strong>dependabot_fn</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>]</span>) – <code class="docutils literal notranslate"><span class="pre">get_dependabot_alerts</span></code>-shaped callable. Override in
+tests.</p></li>
+<li><p><strong>code_scanning_fn</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>]</span>) – <code class="docutils literal notranslate"><span class="pre">get_code_scanning_alerts</span></code>-shaped callable.
+Override in tests.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>‘secrets’, ‘dependabot’, ‘code_scanning’</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>]]</span></p>
+</dd>
+<dt class="field-even">Raises<span class="colon">:</span></dt>
+<dd class="field-even"><p><a class="reference internal" href="#scitex.security.GitHubSecurityError" title="scitex.security.GitHubSecurityError"><strong>GitHubSecurityError</strong></a> – If GitHub CLI is not installed or not authenticated</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.security.save_alerts_to_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.security.</span></span><span class="sig-name descname"><span class="pre">save_alerts_to_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">alerts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">create_symlink</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_security/github.html#save_alerts_to_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.security.save_alerts_to_file" title="Link to this definition"></a></dt>
+<dd><p>Save alerts to a timestamped file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>alerts</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>]]</span>) – Dictionary of alerts from check_github_alerts()</p></li>
+<li><p><strong>output_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Directory to save file. Defaults to ./logs/security</p></li>
+<li><p><strong>create_symlink</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – If True, create ‘security-latest.txt’ symlink</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path to saved file</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.security.get_latest_alerts_file">
+<span class="sig-prename descclassname"><span class="pre">scitex.security.</span></span><span class="sig-name descname"><span class="pre">get_latest_alerts_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">security_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_security/github.html#get_latest_alerts_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.security.get_latest_alerts_file" title="Link to this definition"></a></dt>
+<dd><p>Get path to the latest security alerts file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>security_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span>) – Directory containing security files. Defaults to ./logs/security</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Path to latest file, or None if not found</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.security.format_alerts_report">
+<span class="sig-prename descclassname"><span class="pre">scitex.security.</span></span><span class="sig-name descname"><span class="pre">format_alerts_report</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">alerts</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_security/github.html#format_alerts_report"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.security.format_alerts_report" title="Link to this definition"></a></dt>
+<dd><p>Format alerts into a readable text report.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><p><strong>alerts</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">List</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Dict" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dict</span></code></a>]]</span>) – Dictionary of alerts from check_github_alerts()</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Formatted text report</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py exception">
+<dt class="sig sig-object py" id="scitex.security.GitHubSecurityError">
+<span class="property"><span class="k"><span class="pre">exception</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.security.</span></span><span class="sig-name descname"><span class="pre">GitHubSecurityError</span></span><a class="reference internal" href="../../_modules/scitex_security/github.html#GitHubSecurityError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.security.GitHubSecurityError" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/exceptions.html#Exception" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Exception</span></code></a></p>
+<p>Raised when GitHub security operations fail.</p>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
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diff --git a/src/scitex/_sphinx_html/source/api/session.html b/src/scitex/_sphinx_html/source/api/session.html
new file mode 100644
index 000000000..c1e9c3d43
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/session.html
@@ -0,0 +1,883 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Session Decorator (@stx.session) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+          
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+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#batch-processing">Batch Processing</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/session.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="session-decorator-stx-session">
+<h1>Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)<a class="headerlink" href="#session-decorator-stx-session" title="Link to this heading"></a></h1>
+<p>The <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> decorator is the primary entry point for SciTeX
+scripts. It wraps a function to provide automatic CLI generation,
+output directory management, configuration injection, and provenance tracking.</p>
+<section id="basic-usage">
+<h2>Basic Usage<a class="headerlink" href="#basic-usage" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span>
+    <span class="n">data_path</span><span class="o">=</span><span class="s2">&quot;data.csv&quot;</span><span class="p">,</span>       <span class="c1"># CLI: --data-path data.csv</span>
+    <span class="n">threshold</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span>              <span class="c1"># CLI: --threshold 0.7</span>
+    <span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>        <span class="c1"># Auto-injected session config</span>
+    <span class="n">plt</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>           <span class="c1"># Pre-configured matplotlib</span>
+    <span class="n">logger</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>        <span class="c1"># Session logger</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Analyze experimental data.&quot;&quot;&quot;</span>
+    <span class="n">data</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">data_path</span><span class="p">)</span>
+    <span class="n">result</span> <span class="o">=</span> <span class="n">process</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">threshold</span><span class="p">)</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="s2">&quot;output.csv&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="mi">0</span>  <span class="c1"># exit code (0 = success)</span>
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="n">main</span><span class="p">()</span>  <span class="c1"># No arguments triggers CLI mode</span>
+</pre></div>
+</div>
+<p>Run from the command line:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python<span class="w"> </span>my_script.py<span class="w"> </span>--data-path<span class="w"> </span>experiment.csv<span class="w"> </span>--threshold<span class="w"> </span><span class="m">0</span>.3
+python<span class="w"> </span>my_script.py<span class="w"> </span>--help<span class="w">  </span><span class="c1"># Shows all parameters with defaults</span>
+</pre></div>
+</div>
+</section>
+<section id="how-it-works">
+<h2>How It Works<a class="headerlink" href="#how-it-works" title="Link to this heading"></a></h2>
+<a class="reference internal image-reference" href="source/_static/session_lifecycle.png"><img alt="Session lifecycle: main() → Parse CLI → Create dir → Load config → Execute → SUCCESS or ERROR" class="align-center" src="source/_static/session_lifecycle.png" style="width: 60%;" />
+</a>
+<p>When <code class="docutils literal notranslate"><span class="pre">main()</span></code> is called <strong>without arguments</strong>, the decorator:</p>
+<ol class="arabic simple">
+<li><p><strong>Parses CLI arguments</strong> from the function signature (type hints and defaults become <code class="docutils literal notranslate"><span class="pre">argparse</span></code> options)</p></li>
+<li><p><strong>Creates a session directory</strong> under <code class="docutils literal notranslate"><span class="pre">script_out/RUNNING/{session_id}/</span></code></p></li>
+<li><p><strong>Loads configuration</strong> from <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code> files into <code class="docutils literal notranslate"><span class="pre">CONFIG</span></code></p></li>
+<li><p><strong>Injects globals</strong> (<code class="docutils literal notranslate"><span class="pre">CONFIG</span></code>, <code class="docutils literal notranslate"><span class="pre">plt</span></code>, <code class="docutils literal notranslate"><span class="pre">COLORS</span></code>, <code class="docutils literal notranslate"><span class="pre">logger</span></code>, <code class="docutils literal notranslate"><span class="pre">rngg</span></code>) into the function</p></li>
+<li><p><strong>Redirects stdout/stderr</strong> to log files</p></li>
+<li><p><strong>Executes the function</strong> with parsed arguments</p></li>
+<li><p><strong>Moves output</strong> from <code class="docutils literal notranslate"><span class="pre">RUNNING/</span></code> to <code class="docutils literal notranslate"><span class="pre">FINISHED_SUCCESS/</span></code> (or <code class="docutils literal notranslate"><span class="pre">FINISHED_ERROR/</span></code>)</p></li>
+</ol>
+<p>When called <strong>with arguments</strong> (e.g., <code class="docutils literal notranslate"><span class="pre">main(data_path=&quot;x.csv&quot;)</span></code>), the decorator
+is bypassed and the function runs directly – useful for testing and notebooks.</p>
+</section>
+<section id="output-directory-structure">
+<h2>Output Directory Structure<a class="headerlink" href="#output-directory-structure" title="Link to this heading"></a></h2>
+<p>Each run produces a self-contained output directory:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>my_script_out/
++-- FINISHED_SUCCESS/
+|   +-- 2026Y-02M-13D-14h30m15s_Z5MR/
+|       +-- CONFIGS/
+|       |   +-- CONFIG.yaml     # Frozen configuration
+|       |   +-- CONFIG.pkl      # Pickled config
+|       +-- logs/
+|       |   +-- stdout.log      # Captured stdout
+|       |   +-- stderr.log      # Captured stderr
+|       +-- output.csv          # Your saved files
+|       +-- sine.png            # Your saved figures
+|       +-- sine.csv            # Auto-exported figure data
++-- FINISHED_ERROR/
+|   +-- ...                     # Runs that returned non-zero
++-- RUNNING/
+    +-- ...                     # Currently active sessions
+</pre></div>
+</div>
+<p>The session ID format is <code class="docutils literal notranslate"><span class="pre">YYYY-MM-DD-HH:MM:SS_XXXX</span></code> where <code class="docutils literal notranslate"><span class="pre">XXXX</span></code> is
+a random 4-character suffix for uniqueness.</p>
+</section>
+<section id="injected-parameters">
+<h2>Injected Parameters<a class="headerlink" href="#injected-parameters" title="Link to this heading"></a></h2>
+<p>Use <code class="docutils literal notranslate"><span class="pre">stx.INJECTED</span></code> as the default value to receive auto-injected objects:</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 20.0%" />
+<col style="width: 60.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Parameter Name</p></th>
+<th class="head"><p>Type</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">CONFIG</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">DotDict</span></code></p></td>
+<td><p>Session config with <code class="docutils literal notranslate"><span class="pre">ID</span></code>, <code class="docutils literal notranslate"><span class="pre">SDIR_RUN</span></code>, <code class="docutils literal notranslate"><span class="pre">FILE</span></code>, <code class="docutils literal notranslate"><span class="pre">ARGS</span></code>, plus all <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code> values</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">plt</span></code></p></td>
+<td><p>module</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">matplotlib.pyplot</span></code> configured for the session (Agg backend, style settings)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">COLORS</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">DotDict</span></code></p></td>
+<td><p>Color palette for consistent plotting</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">logger</span></code></p></td>
+<td><p>Logger</p></td>
+<td><p>SciTeX logger writing to session log files</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">rngg</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></p></td>
+<td><p>Reproducibility manager (seeds fixed by default)</p></td>
+</tr>
+</tbody>
+</table>
+<p>Only request the parameters you need:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">n</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Minimal example -- only CONFIG injected.&quot;&quot;&quot;</span>
+    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Session ID: </span><span class="si">{</span><span class="n">CONFIG</span><span class="o">.</span><span class="n">ID</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Output dir: </span><span class="si">{</span><span class="n">CONFIG</span><span class="o">.</span><span class="n">SDIR_RUN</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="mi">0</span>
+</pre></div>
+</div>
+</section>
+<section id="config-object">
+<h2>CONFIG Object<a class="headerlink" href="#config-object" title="Link to this heading"></a></h2>
+<p>The injected <code class="docutils literal notranslate"><span class="pre">CONFIG</span></code> is a <code class="docutils literal notranslate"><span class="pre">DotDict</span></code> supporting both dictionary and
+dot-notation access:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">CONFIG</span><span class="p">[</span><span class="s2">&quot;MODEL&quot;</span><span class="p">][</span><span class="s2">&quot;hidden_size&quot;</span><span class="p">]</span>   <span class="c1"># dict-style</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">MODEL</span><span class="o">.</span><span class="n">hidden_size</span>         <span class="c1"># dot-style (equivalent)</span>
+</pre></div>
+</div>
+<p>It contains:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">CONFIG</span><span class="o">.</span><span class="n">ID</span>             <span class="c1"># &quot;2026Y-02M-13D-14h30m15s_Z5MR&quot;</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">PID</span>            <span class="c1"># Process ID</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">FILE</span>           <span class="c1"># Path to the script</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">SDIR_OUT</span>       <span class="c1"># Base output directory</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">SDIR_RUN</span>       <span class="c1"># Current session&#39;s output directory</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">START_DATETIME</span> <span class="c1"># When the session started</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">ARGS</span>           <span class="c1"># Parsed CLI arguments as dict</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">EXIT_STATUS</span>    <span class="c1"># 0 (success), 1 (error), or None</span>
+</pre></div>
+</div>
+<p>Any YAML files in <code class="docutils literal notranslate"><span class="pre">./config/</span></code> are merged into CONFIG:</p>
+<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="c1"># ./config/EXPERIMENT.yaml</span>
+<span class="nt">learning_rate</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">0.001</span>
+<span class="nt">batch_size</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">32</span>
+</pre></div>
+</div>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Accessible as:</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">EXPERIMENT</span><span class="o">.</span><span class="n">learning_rate</span>  <span class="c1"># 0.001</span>
+<span class="n">CONFIG</span><span class="o">.</span><span class="n">EXPERIMENT</span><span class="o">.</span><span class="n">batch_size</span>     <span class="c1"># 32</span>
+</pre></div>
+</div>
+</section>
+<section id="decorator-options">
+<h2>Decorator Options<a class="headerlink" href="#decorator-options" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="nd">@stx</span><span class="o">.</span><span class="n">session</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">agg</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">notify</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">sdir_suffix</span><span class="o">=</span><span class="s2">&quot;v2&quot;</span><span class="p">)</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="o">...</span><span class="p">):</span>
+    <span class="o">...</span>
+</pre></div>
+</div>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 15.0%" />
+<col style="width: 15.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Option</p></th>
+<th class="head"><p>Type</p></th>
+<th class="head"><p>Default</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">verbose</span></code></p></td>
+<td><p>bool</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">False</span></code></p></td>
+<td><p>Enable verbose logging</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">agg</span></code></p></td>
+<td><p>bool</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">True</span></code></p></td>
+<td><p>Use matplotlib Agg backend (set <code class="docutils literal notranslate"><span class="pre">False</span></code> for interactive plots)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">notify</span></code></p></td>
+<td><p>bool</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">False</span></code></p></td>
+<td><p>Send notification when session completes</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">sdir_suffix</span></code></p></td>
+<td><p>str</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">None</span></code></p></td>
+<td><p>Append suffix to output directory name</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="best-practices">
+<h2>Best Practices<a class="headerlink" href="#best-practices" title="Link to this heading"></a></h2>
+<ol class="arabic simple">
+<li><p><strong>One session per script</strong> – each <code class="docutils literal notranslate"><span class="pre">.py</span></code> file should have one <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> function</p></li>
+<li><p><strong>Return 0 for success</strong> – the return value becomes the exit status</p></li>
+<li><p><strong>Save outputs with</strong> <code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code> – files go into the session directory and are provenance-tracked</p></li>
+<li><p><strong>Put config in YAML</strong> – use <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code> instead of hardcoding parameters</p></li>
+<li><p><strong>Use</strong> <code class="docutils literal notranslate"><span class="pre">stx.repro.fix_seeds()</span></code> – already called by default via <code class="docutils literal notranslate"><span class="pre">rngg</span></code></p></li>
+</ol>
+</section>
+<section id="module-scitex.session">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.session" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
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diff --git a/src/scitex/_sphinx_html/source/api/sh.html b/src/scitex/_sphinx_html/source/api/sh.html
new file mode 100644
index 000000000..d0ac3e6c8
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/sh.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>sh Module (stx.sh) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
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+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+      <li class="breadcrumb-item active">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</li>
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+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/sh.rst" class="fa fa-github"> Edit on GitHub</a>
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+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.sh">
+<span id="sh-module-stx-sh"></span><h1>sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)<a class="headerlink" href="#module-scitex.sh" title="Link to this heading"></a></h1>
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+           </div>
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diff --git a/src/scitex/_sphinx_html/source/api/social.html b/src/scitex/_sphinx_html/source/api/social.html
new file mode 100644
index 000000000..07e1e1d64
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/social.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>social Module (stx.social) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
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+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
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+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+            SciTeX
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+             
+  <section id="module-scitex.social">
+<span id="social-module-stx-social"></span><h1>social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)<a class="headerlink" href="#module-scitex.social" title="Link to this heading"></a></h1>
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diff --git a/src/scitex/_sphinx_html/source/api/stats.html b/src/scitex/_sphinx_html/source/api/stats.html
new file mode 100644
index 000000000..920360e58
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/stats.html
@@ -0,0 +1,813 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Stats Module (stx.stats) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+    <script src="../../_static/js/theme.js"></script>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/stats.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="stats-module-stx-stats">
+<h1>Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)<a class="headerlink" href="#stats-module-stx-stats" title="Link to this heading"></a></h1>
+<p>23 statistical tests with effect sizes, confidence intervals, and
+publication-ready formatting.</p>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="n">g1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">50</span><span class="p">)</span>
+<span class="n">g2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mf">0.5</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">50</span><span class="p">)</span>
+
+<span class="c1"># Run a test</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">)</span>
+
+<span class="c1"># Result is a flat dict with all details</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;statistic&quot;</span><span class="p">])</span>     <span class="c1"># t-statistic</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;pvalue&quot;</span><span class="p">])</span>        <span class="c1"># p-value</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;effect_size&quot;</span><span class="p">])</span>   <span class="c1"># Cohen&#39;s d</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;stars&quot;</span><span class="p">])</span>         <span class="c1"># Significance stars</span>
+
+<span class="c1"># Get as DataFrame or LaTeX</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;dataframe&quot;</span><span class="p">)</span>
+<span class="n">tex</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;latex&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="available-tests">
+<h2>Available Tests<a class="headerlink" href="#available-tests" title="Link to this heading"></a></h2>
+<p><strong>Parametric</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ttest_1samp(data,</span> <span class="pre">popmean)</span></code> – One-sample t-test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ttest_ind(g1,</span> <span class="pre">g2)</span></code> – Independent two-sample t-test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ttest_rel(g1,</span> <span class="pre">g2)</span></code> – Paired t-test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_anova(*groups)</span></code> – One-way ANOVA</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_anova_2way(data,</span> <span class="pre">factor1,</span> <span class="pre">factor2)</span></code> – Two-way ANOVA</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_anova_rm(data,</span> <span class="pre">groups)</span></code> – Repeated measures ANOVA</p></li>
+</ul>
+<p><strong>Non-parametric</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_mannwhitneyu(g1,</span> <span class="pre">g2)</span></code> – Mann-Whitney U test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_wilcoxon(g1,</span> <span class="pre">g2)</span></code> – Wilcoxon signed-rank test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_kruskal(*groups)</span></code> – Kruskal-Wallis H test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_friedman(*groups)</span></code> – Friedman test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_brunner_munzel(g1,</span> <span class="pre">g2)</span></code> – Brunner-Munzel test</p></li>
+</ul>
+<p><strong>Correlation</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_pearson(x,</span> <span class="pre">y)</span></code> – Pearson correlation</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_spearman(x,</span> <span class="pre">y)</span></code> – Spearman rank correlation</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_kendall(x,</span> <span class="pre">y)</span></code> – Kendall tau correlation</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_theilsen(x,</span> <span class="pre">y)</span></code> – Theil-Sen robust regression</p></li>
+</ul>
+<p><strong>Categorical</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_chi2(observed)</span></code> – Chi-squared test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_fisher(table)</span></code> – Fisher’s exact test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_mcnemar(table)</span></code> – McNemar test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_cochran_q(*groups)</span></code> – Cochran’s Q test</p></li>
+</ul>
+<p><strong>Normality</strong></p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">test_shapiro(data)</span></code> – Shapiro-Wilk test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ks_1samp(data)</span></code> – One-sample Kolmogorov-Smirnov test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_ks_2samp(x,</span> <span class="pre">y)</span></code> – Two-sample Kolmogorov-Smirnov test</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">test_normality(*samples)</span></code> – Multi-sample normality check</p></li>
+</ul>
+</section>
+<section id="seaborn-style-data-parameter">
+<h2>Seaborn-Style Data Parameter<a class="headerlink" href="#seaborn-style-data-parameter" title="Link to this heading"></a></h2>
+<p>All two-sample and one-sample tests accept an optional <code class="docutils literal notranslate"><span class="pre">data</span></code> parameter
+for DataFrame/CSV column resolution (like seaborn):</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+
+<span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="s2">&quot;experiment.csv&quot;</span><span class="p">)</span>
+
+<span class="c1"># Two-sample: column names as x/y</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="s2">&quot;before&quot;</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="s2">&quot;after&quot;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="n">df</span><span class="p">)</span>
+
+<span class="c1"># One-sample: column name as x</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_shapiro</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="s2">&quot;scores&quot;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="n">df</span><span class="p">)</span>
+
+<span class="c1"># Multi-group: value + group columns</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_anova</span><span class="p">(</span><span class="n">data</span><span class="o">=</span><span class="n">df</span><span class="p">,</span> <span class="n">value_col</span><span class="o">=</span><span class="s2">&quot;score&quot;</span><span class="p">,</span> <span class="n">group_col</span><span class="o">=</span><span class="s2">&quot;treatment&quot;</span><span class="p">)</span>
+
+<span class="c1"># Also works with CSV path</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_ttest_ind</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="s2">&quot;col1&quot;</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="s2">&quot;col2&quot;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="test-recommendation">
+<h2>Test Recommendation<a class="headerlink" href="#test-recommendation" title="Link to this heading"></a></h2>
+<p>Not sure which test to use? Let SciTeX recommend:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">recommendations</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">recommend_tests</span><span class="p">(</span>
+    <span class="n">n_groups</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
+    <span class="n">sample_sizes</span><span class="o">=</span><span class="p">[</span><span class="mi">30</span><span class="p">,</span> <span class="mi">35</span><span class="p">],</span>
+    <span class="n">outcome_type</span><span class="o">=</span><span class="s2">&quot;continuous&quot;</span><span class="p">,</span>
+    <span class="n">paired</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="output-formats">
+<h2>Output Formats<a class="headerlink" href="#output-formats" title="Link to this heading"></a></h2>
+<p>Every test supports <code class="docutils literal notranslate"><span class="pre">return_as</span></code> parameter:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">&quot;dict&quot;</span></code> (default) – Returns plain dict with all results</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">&quot;dataframe&quot;</span></code> – Returns pandas DataFrame</p></li>
+</ul>
+</section>
+<section id="descriptive-statistics">
+<h2>Descriptive Statistics<a class="headerlink" href="#descriptive-statistics" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">describe</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>                    <span class="c1"># mean, std, median, IQR, etc.</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">effect_sizes</span><span class="o">.</span><span class="n">cohens_d</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">)</span>     <span class="c1"># Cohen&#39;s d</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">test_normality</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">)</span>            <span class="c1"># Multi-sample normality</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">p_to_stars</span><span class="p">(</span><span class="mf">0.003</span><span class="p">)</span>                 <span class="c1"># &quot;**&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="multiple-comparison-correction">
+<h2>Multiple Comparison Correction<a class="headerlink" href="#multiple-comparison-correction" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">corrected</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">correct_pvalues</span><span class="p">(</span>
+    <span class="p">[</span><span class="mf">0.01</span><span class="p">,</span> <span class="mf">0.03</span><span class="p">,</span> <span class="mf">0.05</span><span class="p">,</span> <span class="mf">0.001</span><span class="p">],</span>
+    <span class="n">method</span><span class="o">=</span><span class="s2">&quot;fdr_bh&quot;</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="post-hoc-tests">
+<h2>Post-hoc Tests<a class="headerlink" href="#post-hoc-tests" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">posthoc_test</span><span class="p">(</span>
+    <span class="p">[</span><span class="n">g1</span><span class="p">,</span> <span class="n">g2</span><span class="p">,</span> <span class="n">g3</span><span class="p">],</span>
+    <span class="n">group_names</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;Control&quot;</span><span class="p">,</span> <span class="s2">&quot;Treatment A&quot;</span><span class="p">,</span> <span class="s2">&quot;Treatment B&quot;</span><span class="p">],</span>
+    <span class="n">method</span><span class="o">=</span><span class="s2">&quot;tukey&quot;</span><span class="p">,</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.stats">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.stats" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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diff --git a/src/scitex/_sphinx_html/source/api/str.html b/src/scitex/_sphinx_html/source/api/str.html
new file mode 100644
index 000000000..e6369fb8d
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/str.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>str Module (stx.str) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
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+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
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+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/str.rst" class="fa fa-github"> Edit on GitHub</a>
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+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.str">
+<span id="str-module-stx-str"></span><h1>str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)<a class="headerlink" href="#module-scitex.str" title="Link to this heading"></a></h1>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+      jQuery(function () {
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\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/template.html b/src/scitex/_sphinx_html/source/api/template.html
new file mode 100644
index 000000000..8b806971d
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/template.html
@@ -0,0 +1,824 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Template Module (stx.template) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/template.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="template-module-stx-template">
+<h1>Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)<a class="headerlink" href="#template-module-stx-template" title="Link to this heading"></a></h1>
+<p>Project scaffolding and code snippet templates for quick starts.
+Create fully structured research projects, Python packages, or
+academic papers with a single command.</p>
+<section id="project-templates">
+<h2>Project Templates<a class="headerlink" href="#project-templates" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Clone a project template</span>
+scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>research<span class="w"> </span>my_project
+scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>pip_project<span class="w"> </span>my_package
+scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>paper<span class="w"> </span>my_paper
+scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>app<span class="w"> </span>my_app
+scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>singularity<span class="w"> </span>my_container
+</pre></div>
+</div>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 25.0%" />
+<col style="width: 75.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Template</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">research</span></code></p></td>
+<td><p>Full scientific workflow (scripts, data, docs, config, session scaffolding)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">research_minimal</span></code></p></td>
+<td><p>Essential modules only for lightweight experiments</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">pip_project</span></code></p></td>
+<td><p>Distributable Python package for PyPI (<code class="docutils literal notranslate"><span class="pre">pyproject.toml</span></code>, tests, CI)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">paper</span></code></p></td>
+<td><p>Academic paper with LaTeX/BibTeX structure, SciTeX writer integration</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">app</span></code></p></td>
+<td><p>SciTeX application with bridge-init, MountPoint, and EventBus</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">singularity</span></code></p></td>
+<td><p>Reproducible containerized environment (Singularity/Apptainer definition)</p></td>
+</tr>
+</tbody>
+</table>
+<section id="what-you-get">
+<h3>What You Get<a class="headerlink" href="#what-you-get" title="Link to this heading"></a></h3>
+<p>A <code class="docutils literal notranslate"><span class="pre">research</span></code> template creates:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>my_project/
++-- config/
+|   +-- EXPERIMENT.yaml       # Experiment parameters
++-- scripts/
+|   +-- main.py               # @stx.session entry point
++-- data/                     # Raw data directory
++-- docs/                     # Documentation
++-- tests/                    # Test suite
++-- Makefile                  # Common tasks
++-- pyproject.toml            # Package metadata
+</pre></div>
+</div>
+</section>
+</section>
+<section id="git-strategies">
+<h2>Git Strategies<a class="headerlink" href="#git-strategies" title="Link to this heading"></a></h2>
+<p>Control how git is initialized in the cloned template:</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 80.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Strategy</p></th>
+<th class="head"><p>Behavior</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">child</span></code> (default)</p></td>
+<td><p>Fresh git repo, isolated from template</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">parent</span></code></p></td>
+<td><p>Use parent repo if available</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">origin</span></code></p></td>
+<td><p>Preserve template’s git history</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">None</span></code></p></td>
+<td><p>No git initialization</p></td>
+</tr>
+</tbody>
+</table>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.template</span><span class="w"> </span><span class="kn">import</span> <span class="n">clone_template</span>
+
+<span class="n">clone_template</span><span class="p">(</span><span class="s2">&quot;research&quot;</span><span class="p">,</span> <span class="s2">&quot;my_project&quot;</span><span class="p">,</span> <span class="n">git_strategy</span><span class="o">=</span><span class="s2">&quot;child&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="code-templates">
+<h2>Code Templates<a class="headerlink" href="#code-templates" title="Link to this heading"></a></h2>
+<p>Ready-to-use code snippets for common SciTeX patterns. Each snippet
+is a complete, runnable script.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># List available code templates</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>list
+
+<span class="c1"># Get a template (prints to stdout)</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session<span class="w">           </span><span class="c1"># Full @stx.session script</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session-minimal<span class="w">   </span><span class="c1"># Lightweight session</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session-plot<span class="w">      </span><span class="c1"># Figure-focused session</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session-stats<span class="w">     </span><span class="c1"># Statistics-focused session</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>io<span class="w">                </span><span class="c1"># I/O operations</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>plt<span class="w">               </span><span class="c1"># Plotting patterns</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>stats<span class="w">             </span><span class="c1"># Statistical analysis</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>scholar<span class="w">           </span><span class="c1"># Literature management</span>
+
+<span class="c1"># Save to a file</span>
+scitex<span class="w"> </span>template<span class="w"> </span>code<span class="w"> </span>session<span class="w"> </span>--output<span class="w"> </span>analyze.py
+</pre></div>
+</div>
+</section>
+<section id="python-api">
+<h2>Python API<a class="headerlink" href="#python-api" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.template</span><span class="w"> </span><span class="kn">import</span> <span class="n">clone_template</span><span class="p">,</span> <span class="n">get_code_template</span>
+
+<span class="c1"># Clone a project template</span>
+<span class="n">clone_template</span><span class="p">(</span><span class="s2">&quot;research&quot;</span><span class="p">,</span> <span class="s2">&quot;my_experiment&quot;</span><span class="p">,</span> <span class="n">git_strategy</span><span class="o">=</span><span class="s2">&quot;child&quot;</span><span class="p">)</span>
+
+<span class="c1"># Get a code snippet as a string</span>
+<span class="n">code</span> <span class="o">=</span> <span class="n">get_code_template</span><span class="p">(</span><span class="s2">&quot;session&quot;</span><span class="p">)</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">code</span><span class="p">)</span>
+
+<span class="c1"># Get a code snippet and write to file</span>
+<span class="n">code</span> <span class="o">=</span> <span class="n">get_code_template</span><span class="p">(</span><span class="s2">&quot;session&quot;</span><span class="p">,</span> <span class="n">filepath</span><span class="o">=</span><span class="s2">&quot;analyze.py&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="mcp-interface">
+<h2>MCP Interface<a class="headerlink" href="#mcp-interface" title="Link to this heading"></a></h2>
+<p>Code templates are also available to AI agents via MCP tools:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># List templates</span>
+<span class="n">template_list_code_templates</span><span class="p">()</span>
+
+<span class="c1"># Get a specific template</span>
+<span class="n">template_get_code_template</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s2">&quot;session-plot&quot;</span><span class="p">)</span>
+
+<span class="c1"># Clone a project</span>
+<span class="n">template_clone_template</span><span class="p">(</span><span class="n">template_type</span><span class="o">=</span><span class="s2">&quot;research&quot;</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s2">&quot;my_project&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.template">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.template" title="Link to this heading"></a></h2>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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diff --git a/src/scitex/_sphinx_html/source/api/tex.html b/src/scitex/_sphinx_html/source/api/tex.html
new file mode 100644
index 000000000..1fd153aea
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/tex.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>tex Module (stx.tex) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+      <li class="breadcrumb-item active">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</li>
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+             
+  <section id="module-scitex.tex">
+<span id="tex-module-stx-tex"></span><h1>tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)<a class="headerlink" href="#module-scitex.tex" title="Link to this heading"></a></h1>
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diff --git a/src/scitex/_sphinx_html/source/api/torch.html b/src/scitex/_sphinx_html/source/api/torch.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/torch.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>torch Module (stx.torch) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+    <script src="../../_static/js/theme.js"></script>
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+    <input type="hidden" name="check_keywords" value="yes" />
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
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+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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diff --git a/src/scitex/_sphinx_html/source/api/tunnel.html b/src/scitex/_sphinx_html/source/api/tunnel.html
new file mode 100644
index 000000000..c8756fa0c
--- /dev/null
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@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>tunnel Module (stx.tunnel) &mdash; SciTeX v0.0.0</title>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+  <section id="module-scitex.tunnel">
+<span id="tunnel-module-stx-tunnel"></span><h1>tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)<a class="headerlink" href="#module-scitex.tunnel" title="Link to this heading"></a></h1>
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diff --git a/src/scitex/_sphinx_html/source/api/types.html b/src/scitex/_sphinx_html/source/api/types.html
new file mode 100644
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--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/types.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>types Module (stx.types) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
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+</head>
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+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/types.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.types">
+<span id="types-module-stx-types"></span><h1>types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)<a class="headerlink" href="#module-scitex.types" title="Link to this heading"></a></h1>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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diff --git a/src/scitex/_sphinx_html/source/api/ui.html b/src/scitex/_sphinx_html/source/api/ui.html
new file mode 100644
index 000000000..09f2f4e97
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/ui.html
@@ -0,0 +1,734 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>ui Module (stx.ui) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/ui.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.ui">
+<span id="ui-module-stx-ui"></span><h1>ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)<a class="headerlink" href="#module-scitex.ui" title="Link to this heading"></a></h1>
+<p>scitex-ui — Shared frontend UI components for the SciTeX ecosystem.</p>
+<p>Components ship as TypeScript + CSS static assets, discoverable by Django’s
+AppDirectoriesFinder when added to INSTALLED_APPS.</p>
+<p>Python API provides component metadata and registration.</p>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.ui.get_component">
+<span class="sig-prename descclassname"><span class="pre">scitex.ui.</span></span><span class="sig-name descname"><span class="pre">get_component</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_ui/_registry.html#get_component"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.ui.get_component" title="Link to this definition"></a></dt>
+<dd><p>Get metadata for a registered component.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Any</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.ui.list_components">
+<span class="sig-prename descclassname"><span class="pre">scitex.ui.</span></span><span class="sig-name descname"><span class="pre">list_components</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_ui/_registry.html#list_components"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.ui.list_components" title="Link to this definition"></a></dt>
+<dd><p>List all registered component names.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.ui.get_static_dir">
+<span class="sig-prename descclassname"><span class="pre">scitex.ui.</span></span><span class="sig-name descname"><span class="pre">get_static_dir</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_ui.html#get_static_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.ui.get_static_dir" title="Link to this definition"></a></dt>
+<dd><p>Return the absolute path to scitex_ui’s static asset directory.</p>
+<p>This is the directory containing <code class="docutils literal notranslate"><span class="pre">css/</span></code> and <code class="docutils literal notranslate"><span class="pre">ts/</span></code> subdirectories.
+Works for both pip-installed packages and editable (dev) installs.</p>
+<p>Useful for build tools (Vite, Webpack) that need to resolve
+scitex-ui source files at build time.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>e.g. <code class="docutils literal notranslate"><span class="pre">/usr/lib/python3.11/.../scitex_ui/static/scitex_ui</span></code></p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.ui.get_docs_path">
+<span class="sig-prename descclassname"><span class="pre">scitex.ui.</span></span><span class="sig-name descname"><span class="pre">get_docs_path</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_ui.html#get_docs_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.ui.get_docs_path" title="Link to this definition"></a></dt>
+<dd><p>Return the absolute path to scitex_ui’s bundled documentation directory.</p>
+<p>The directory contains <code class="docutils literal notranslate"><span class="pre">APP_DEVELOPER_GUIDE.md</span></code> and the Sphinx-built
+HTML docs. Works for both pip-installed packages and editable (dev) installs.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>e.g. <code class="docutils literal notranslate"><span class="pre">/usr/lib/python3.11/.../scitex_ui/_docs</span></code></p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+</footer>
+        </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/api/utils.html b/src/scitex/_sphinx_html/source/api/utils.html
new file mode 100644
index 000000000..4fed35e52
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/utils.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>utils Module (stx.utils) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+      <li class="breadcrumb-item active">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</li>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="utils-module-stx-utils">
+<h1>utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)<a class="headerlink" href="#utils-module-stx-utils" title="Link to this heading"></a></h1>
+</section>
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+           </div>
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+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
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diff --git a/src/scitex/_sphinx_html/source/api/web.html b/src/scitex/_sphinx_html/source/api/web.html
new file mode 100644
index 000000000..86760ab51
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/web.html
@@ -0,0 +1,674 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>web Module (stx.web) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
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+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
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+        </div>
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/web.rst" class="fa fa-github"> Edit on GitHub</a>
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+           <div itemprop="articleBody">
+             
+  <section id="module-scitex.web">
+<span id="web-module-stx-web"></span><h1>web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)<a class="headerlink" href="#module-scitex.web" title="Link to this heading"></a></h1>
+</section>
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+           </div>
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diff --git a/src/scitex/_sphinx_html/source/api/writer.html b/src/scitex/_sphinx_html/source/api/writer.html
new file mode 100644
index 000000000..7bae936b3
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/api/writer.html
@@ -0,0 +1,1274 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Writer Module (stx.writer) &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=9edc463e" />
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+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+            SciTeX
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+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/api/writer.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="writer-module-stx-writer">
+<h1>Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)<a class="headerlink" href="#writer-module-stx-writer" title="Link to this heading"></a></h1>
+<p>LaTeX manuscript compilation, figure/table management, bibliography
+handling, and IMRAD writing guidelines.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">stx.writer</span></code> wraps the standalone
+<a class="reference external" href="https://github.com/ywatanabe1989/scitex-writer">scitex-writer</a> package.
+Install with: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-writer</span></code>.</p>
+</div>
+<section id="quick-reference">
+<h2>Quick Reference<a class="headerlink" href="#quick-reference" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.writer</span><span class="w"> </span><span class="kn">import</span> <span class="n">Writer</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">pathlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Path</span>
+
+<span class="n">writer</span> <span class="o">=</span> <span class="n">Writer</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="s2">&quot;my_paper&quot;</span><span class="p">))</span>
+
+<span class="c1"># Compile manuscript → PDF</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_manuscript</span><span class="p">()</span>
+<span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;PDF: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+<span class="c1"># Compile supplementary materials</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_supplementary</span><span class="p">()</span>
+
+<span class="c1"># Compile revision with change tracking</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_revision</span><span class="p">(</span><span class="n">track_changes</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-usage">
+<h2>CLI Usage<a class="headerlink" href="#cli-usage" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Compile</span>
+scitex<span class="w"> </span>writer<span class="w"> </span>compile<span class="w"> </span>manuscript<span class="w"> </span>./my-paper
+scitex<span class="w"> </span>writer<span class="w"> </span>compile<span class="w"> </span>supplementary<span class="w"> </span>./my-paper
+scitex<span class="w"> </span>writer<span class="w"> </span>compile<span class="w"> </span>revision<span class="w"> </span>./my-paper<span class="w"> </span>--track-changes
+
+<span class="c1"># Bibliography</span>
+scitex<span class="w"> </span>writer<span class="w"> </span>bib<span class="w"> </span>list<span class="w"> </span>./my-paper
+scitex<span class="w"> </span>writer<span class="w"> </span>bib<span class="w"> </span>add<span class="w"> </span>./my-paper<span class="w"> </span><span class="s2">&quot;@article{...}&quot;</span>
+
+<span class="c1"># Tables and figures</span>
+scitex<span class="w"> </span>writer<span class="w"> </span>tables<span class="w"> </span>add<span class="w"> </span>./my-paper<span class="w"> </span>data.csv
+scitex<span class="w"> </span>writer<span class="w"> </span>figures<span class="w"> </span>list<span class="w"> </span>./my-paper
+
+<span class="c1"># Writing guidelines</span>
+scitex<span class="w"> </span>writer<span class="w"> </span>guidelines<span class="w"> </span>get<span class="w"> </span>abstract
+</pre></div>
+</div>
+</section>
+<section id="project-structure">
+<h2>Project Structure<a class="headerlink" href="#project-structure" title="Link to this heading"></a></h2>
+<p>A writer project follows this layout:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>my_paper/
++-- 00_shared/
+|   +-- bibliography.bib
+|   +-- figures/
+|   +-- tables/
++-- 01_manuscript/
+|   +-- main.tex
+|   +-- sections/
++-- 02_supplementary/
+|   +-- main.tex
++-- 03_revision/
+    +-- main.tex
+</pre></div>
+</div>
+<p>Create a new project:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>paper<span class="w"> </span>my_paper
+</pre></div>
+</div>
+</section>
+<section id="key-classes">
+<h2>Key Classes<a class="headerlink" href="#key-classes" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">Writer</span></code> – Main entry point for compilation and project management</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code> – Compilation outcome (success, output path, logs)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code> – Document tree for the main manuscript</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code> – Document tree for supplementary materials</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code> – Document tree for revision responses</p></li>
+</ul>
+</section>
+<section id="document-management">
+<h2>Document Management<a class="headerlink" href="#document-management" title="Link to this heading"></a></h2>
+<p><strong>Figures:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Add figure (copies image + creates caption file)</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">add_figure</span><span class="p">(</span><span class="s2">&quot;fig1&quot;</span><span class="p">,</span> <span class="s2">&quot;plot.png&quot;</span><span class="p">,</span> <span class="n">caption</span><span class="o">=</span><span class="s2">&quot;Results&quot;</span><span class="p">)</span>
+
+<span class="c1"># List figures</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">list_figures</span><span class="p">()</span>
+
+<span class="c1"># Convert between formats</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">convert_figure</span><span class="p">(</span><span class="s2">&quot;figure.pdf&quot;</span><span class="p">,</span> <span class="s2">&quot;figure.png&quot;</span><span class="p">,</span> <span class="n">dpi</span><span class="o">=</span><span class="mi">300</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><strong>Tables:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Add table from CSV</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">add_table</span><span class="p">(</span><span class="s2">&quot;tab1&quot;</span><span class="p">,</span> <span class="n">csv_content</span><span class="p">,</span> <span class="n">caption</span><span class="o">=</span><span class="s2">&quot;Demographics&quot;</span><span class="p">)</span>
+
+<span class="c1"># CSV ↔ LaTeX conversion</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">csv_to_latex</span><span class="p">(</span><span class="s2">&quot;data.csv&quot;</span><span class="p">,</span> <span class="s2">&quot;table.tex&quot;</span><span class="p">)</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">latex_to_csv</span><span class="p">(</span><span class="s2">&quot;table.tex&quot;</span><span class="p">,</span> <span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><strong>Bibliography:</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Add BibTeX entry</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">add_bibentry</span><span class="p">(</span><span class="s1">&#39;@article{key, title={...}, ...}&#39;</span><span class="p">)</span>
+
+<span class="c1"># Merge multiple .bib files</span>
+<span class="n">writer</span><span class="o">.</span><span class="n">merge_bibfiles</span><span class="p">(</span><span class="n">output_file</span><span class="o">=</span><span class="s2">&quot;bibliography.bib&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="writing-guidelines">
+<h2>Writing Guidelines<a class="headerlink" href="#writing-guidelines" title="Link to this heading"></a></h2>
+<p>IMRAD guidelines for each manuscript section:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>writer<span class="w"> </span>guidelines<span class="w"> </span>list
+scitex<span class="w"> </span>writer<span class="w"> </span>guidelines<span class="w"> </span>get<span class="w"> </span>introduction
+</pre></div>
+</div>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scitex.writer</span><span class="w"> </span><span class="kn">import</span> <span class="n">guidelines</span>
+
+<span class="c1"># Get guideline for a section</span>
+<span class="n">guide</span> <span class="o">=</span> <span class="n">guidelines</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;methods&quot;</span><span class="p">)</span>
+
+<span class="c1"># Build editing prompt: guideline + draft</span>
+<span class="n">prompt</span> <span class="o">=</span> <span class="n">guidelines</span><span class="o">.</span><span class="n">build</span><span class="p">(</span><span class="s2">&quot;discussion&quot;</span><span class="p">,</span> <span class="n">draft_text</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="compilation-options">
+<h2>Compilation Options<a class="headerlink" href="#compilation-options" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_manuscript</span><span class="p">(</span>
+    <span class="n">timeout</span><span class="o">=</span><span class="mi">300</span><span class="p">,</span>        <span class="c1"># Max compilation time (seconds)</span>
+    <span class="n">no_figs</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>      <span class="c1"># Exclude figures</span>
+    <span class="n">no_tables</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>    <span class="c1"># Exclude tables</span>
+    <span class="n">draft</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>        <span class="c1"># Draft mode (fast, lower quality)</span>
+    <span class="n">dark_mode</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>    <span class="c1"># Dark color scheme</span>
+    <span class="n">quiet</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>        <span class="c1"># Suppress output</span>
+<span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="module-scitex.writer">
+<span id="api-reference"></span><h2>API Reference<a class="headerlink" href="#module-scitex.writer" title="Link to this heading"></a></h2>
+<p>SciTeX Writer - LaTeX manuscript compilation system with MCP server.</p>
+<dl class="simple">
+<dt>Three Interfaces:</dt><dd><ul class="simple">
+<li><p>Python API: import scitex_writer as sw</p></li>
+<li><p>CLI: scitex-writer &lt;command&gt;</p></li>
+<li><p>MCP: 30 tools for AI agents</p></li>
+</ul>
+</dd>
+<dt>Modules:</dt><dd><ul class="simple">
+<li><p>compile: Compile manuscripts to PDF</p></li>
+<li><p>export: Export manuscript for arXiv submission</p></li>
+<li><p>project: Clone, info, get_pdf</p></li>
+<li><p>tables: List, add, remove, csv_to_latex</p></li>
+<li><p>figures: List, add, remove, convert</p></li>
+<li><p>bib: List, add, remove, merge</p></li>
+<li><p>guidelines: IMRAD writing tips</p></li>
+<li><p>prompts: AI2 Asta integration</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py function">
+<dt class="sig sig-object py" id="scitex.writer.usage">
+<span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">usage</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#scitex.writer.usage" title="Link to this definition"></a></dt>
+<dd><p>Get the usage guide with branding applied.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Formatted usage guide string.</p>
+</dd>
+<dt class="field-even">Return type<span class="colon">:</span></dt>
+<dd class="field-even"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.Writer">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">Writer</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">project_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_strategy</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'child'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">branch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/writer.html#Writer"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>LaTeX manuscript compiler.</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">project_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_strategy</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'child'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">branch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/writer.html#Writer.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.__init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize for project directory.</p>
+<p>If directory doesn’t exist, creates new project.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>project_dir</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a></span>) – Path to project directory.</p></li>
+<li><p><strong>name</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Project name (used if creating new project).</p></li>
+<li><p><strong>git_strategy</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Git initialization strategy:
+- ‘child’: Create isolated git in project directory (default)
+- ‘parent’: Use parent git repository
+- ‘origin’: Preserve template’s original git history
+- None or ‘none’: Disable git initialization</p></li>
+<li><p><strong>branch</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific branch of template repository to clone.
+If None, clones the default branch. Mutually exclusive with tag.</p></li>
+<li><p><strong>tag</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]</span>) – Specific tag/release of template repository to clone.
+If None, clones the default branch. Mutually exclusive with branch.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.compile_manuscript">
+<span class="sig-name descname"><span class="pre">compile_manuscript</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">progress_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/writer.html#Writer.compile_manuscript"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.compile_manuscript" title="Link to this definition"></a></dt>
+<dd><p>Compile manuscript to PDF with optional live callbacks.</p>
+<p>Runs scripts/shell/compile_manuscript.sh with configured settings.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum compilation time in seconds (default: 300).</p></li>
+<li><p><strong>log_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with each log line: log_callback(“Running pdflatex…”).</p></li>
+<li><p><strong>progress_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with progress: progress_callback(50, “Pass 2/3”).</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>With success status, PDF path, and errors/warnings.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.writer.CompilationResult" title="scitex_writer._dataclasses.results._CompilationResult.CompilationResult"><code class="xref py py-class docutils literal notranslate"><span class="pre">CompilationResult</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">writer</span> <span class="o">=</span> <span class="n">Writer</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="s2">&quot;my_paper&quot;</span><span class="p">))</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_manuscript</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;PDF created: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.compile_supplementary">
+<span class="sig-name descname"><span class="pre">compile_supplementary</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">progress_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/writer.html#Writer.compile_supplementary"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.compile_supplementary" title="Link to this definition"></a></dt>
+<dd><p>Compile supplementary materials to PDF with optional live callbacks.</p>
+<p>Runs scripts/shell/compile_supplementary.sh with configured settings.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum compilation time in seconds (default: 300).</p></li>
+<li><p><strong>log_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with each log line.</p></li>
+<li><p><strong>progress_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with progress updates.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>With success status, PDF path, and errors/warnings.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.writer.CompilationResult" title="scitex_writer._dataclasses.results._CompilationResult.CompilationResult"><code class="xref py py-class docutils literal notranslate"><span class="pre">CompilationResult</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">writer</span> <span class="o">=</span> <span class="n">Writer</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="s2">&quot;my_paper&quot;</span><span class="p">))</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_supplementary</span><span class="p">()</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;PDF created: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.compile_revision">
+<span class="sig-name descname"><span class="pre">compile_revision</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">track_changes</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">300</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">progress_callback</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/writer.html#Writer.compile_revision"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.compile_revision" title="Link to this definition"></a></dt>
+<dd><p>Compile revision document with optional change tracking and live callbacks.</p>
+<p>Runs scripts/shell/compile_revision.sh with configured settings.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>track_changes</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span>) – Enable change tracking in compiled PDF (default: False).</p></li>
+<li><p><strong>timeout</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a></span>) – Maximum compilation time in seconds (default: 300).</p></li>
+<li><p><strong>log_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with each log line.</p></li>
+<li><p><strong>progress_callback</strong> (<span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Callable" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Callable</span></code></a>[[<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>], <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>]]</span>) – Called with progress updates.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>With success status, PDF path, and errors/warnings.</p>
+</dd>
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference internal" href="#scitex.writer.CompilationResult" title="scitex_writer._dataclasses.results._CompilationResult.CompilationResult"><code class="xref py py-class docutils literal notranslate"><span class="pre">CompilationResult</span></code></a></span></p>
+</dd>
+</dl>
+<div class="admonition-examples admonition">
+<p class="admonition-title">Examples</p>
+<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">writer</span> <span class="o">=</span> <span class="n">Writer</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="s2">&quot;my_paper&quot;</span><span class="p">))</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">result</span> <span class="o">=</span> <span class="n">writer</span><span class="o">.</span><span class="n">compile_revision</span><span class="p">(</span><span class="n">track_changes</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+<span class="gp">... </span>    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Revision PDF: </span><span class="si">{</span><span class="n">result</span><span class="o">.</span><span class="n">output_pdf</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.watch">
+<span class="sig-name descname"><span class="pre">watch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">on_compile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/writer.html#Writer.watch"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.watch" title="Link to this definition"></a></dt>
+<dd><p>Auto-recompile on file changes.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.get_pdf">
+<span class="sig-name descname"><span class="pre">get_pdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">doc_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'manuscript'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/writer.html#Writer.get_pdf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.get_pdf" title="Link to this definition"></a></dt>
+<dd><p>Get output PDF path (Read).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Optional" title="(in Python v3.14)"><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">Path</span></code></a>]</span></p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.Writer.delete">
+<span class="sig-name descname"><span class="pre">delete</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/writer.html#Writer.delete"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.Writer.delete" title="Link to this definition"></a></dt>
+<dd><p>Delete project directory (Delete).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a></span></p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">CompilationResult</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">success</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exit_code</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stdout</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stderr</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_pdf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">diff_pdf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">log_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">duration</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">errors</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">warnings</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">&lt;factory&gt;</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/results/_CompilationResult.html#CompilationResult"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.CompilationResult" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Result of LaTeX compilation.</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.success">
+<span class="sig-name descname"><span class="pre">success</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><span class="pre">bool</span></a></span><a class="headerlink" href="#scitex.writer.CompilationResult.success" title="Link to this definition"></a></dt>
+<dd><p>Whether compilation succeeded (exit code 0)</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.exit_code">
+<span class="sig-name descname"><span class="pre">exit_code</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.14)"><span class="pre">int</span></a></span><a class="headerlink" href="#scitex.writer.CompilationResult.exit_code" title="Link to this definition"></a></dt>
+<dd><p>Process exit code</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.stdout">
+<span class="sig-name descname"><span class="pre">stdout</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><a class="headerlink" href="#scitex.writer.CompilationResult.stdout" title="Link to this definition"></a></dt>
+<dd><p>Standard output from compilation</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.stderr">
+<span class="sig-name descname"><span class="pre">stderr</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a></span><a class="headerlink" href="#scitex.writer.CompilationResult.stderr" title="Link to this definition"></a></dt>
+<dd><p>Standard error from compilation</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.output_pdf">
+<span class="sig-name descname"><span class="pre">output_pdf</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.CompilationResult.output_pdf" title="Link to this definition"></a></dt>
+<dd><p>Path to generated PDF (if successful)</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.diff_pdf">
+<span class="sig-name descname"><span class="pre">diff_pdf</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.CompilationResult.diff_pdf" title="Link to this definition"></a></dt>
+<dd><p>Path to diff PDF with tracked changes (if generated)</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.log_file">
+<span class="sig-name descname"><span class="pre">log_file</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.CompilationResult.log_file" title="Link to this definition"></a></dt>
+<dd><p>Path to compilation log file</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.duration">
+<span class="sig-name descname"><span class="pre">duration</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><span class="pre">float</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">0.0</span></span><a class="headerlink" href="#scitex.writer.CompilationResult.duration" title="Link to this definition"></a></dt>
+<dd><p>Compilation duration in seconds</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.errors">
+<span class="sig-name descname"><span class="pre">errors</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#scitex.writer.CompilationResult.errors" title="Link to this definition"></a></dt>
+<dd><p>Parsed LaTeX errors (if any)</p>
+</dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.warnings">
+<span class="sig-name descname"><span class="pre">warnings</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.List" title="(in Python v3.14)"><span class="pre">List</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span><a class="headerlink" href="#scitex.writer.CompilationResult.warnings" title="Link to this definition"></a></dt>
+<dd><p>Parsed LaTeX warnings (if any)</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.CompilationResult.__str__">
+<span class="sig-name descname"><span class="pre">__str__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/results/_CompilationResult.html#CompilationResult.__str__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.CompilationResult.__str__" title="Link to this definition"></a></dt>
+<dd><p>Human-readable summary.</p>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">ManuscriptTree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contents</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">base</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">readme</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">archive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html#ManuscriptTree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.ManuscriptTree" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Manuscript directory structure (01_manuscript/).</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.root">
+<span class="sig-name descname"><span class="pre">root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.git_root">
+<span class="sig-name descname"><span class="pre">git_root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.git_root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.contents">
+<span class="sig-name descname"><span class="pre">contents</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">ManuscriptContents</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.contents" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.base">
+<span class="sig-name descname"><span class="pre">base</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.base" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.readme">
+<span class="sig-name descname"><span class="pre">readme</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.readme" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.archive">
+<span class="sig-name descname"><span class="pre">archive</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.ManuscriptTree.archive" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.__post_init__">
+<span class="sig-name descname"><span class="pre">__post_init__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html#ManuscriptTree.__post_init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.ManuscriptTree.__post_init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize all instances.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.ManuscriptTree.verify_structure">
+<span class="sig-name descname"><span class="pre">verify_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_ManuscriptTree.html#ManuscriptTree.verify_structure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.ManuscriptTree.verify_structure" title="Link to this definition"></a></dt>
+<dd><p>Verify manuscript structure has required components.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span></p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(is_valid, list_of_missing_items_with_paths)</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">SupplementaryTree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contents</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">base</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">supplementary</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">supplementary_diff</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">readme</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">archive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html#SupplementaryTree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.SupplementaryTree" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Supplementary directory structure (02_supplementary/).</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.root">
+<span class="sig-name descname"><span class="pre">root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.git_root">
+<span class="sig-name descname"><span class="pre">git_root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.git_root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.contents">
+<span class="sig-name descname"><span class="pre">contents</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">SupplementaryContents</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.contents" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.base">
+<span class="sig-name descname"><span class="pre">base</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.base" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.supplementary">
+<span class="sig-name descname"><span class="pre">supplementary</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.supplementary" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.supplementary_diff">
+<span class="sig-name descname"><span class="pre">supplementary_diff</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.supplementary_diff" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.readme">
+<span class="sig-name descname"><span class="pre">readme</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.readme" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.archive">
+<span class="sig-name descname"><span class="pre">archive</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.SupplementaryTree.archive" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.__post_init__">
+<span class="sig-name descname"><span class="pre">__post_init__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html#SupplementaryTree.__post_init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.SupplementaryTree.__post_init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize all instances.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.SupplementaryTree.verify_structure">
+<span class="sig-name descname"><span class="pre">verify_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_SupplementaryTree.html#SupplementaryTree.verify_structure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.SupplementaryTree.verify_structure" title="Link to this definition"></a></dt>
+<dd><p>Verify supplementary structure has required components.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span></p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(is_valid, list_of_missing_items_with_paths)</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="py class">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">scitex.writer.</span></span><span class="sig-name descname"><span class="pre">RevisionTree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">git_root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contents</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">base</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">revision</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">readme</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">archive</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">docs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html#RevisionTree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.RevisionTree" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<p>Revision directory structure (03_revision/).</p>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.root">
+<span class="sig-name descname"><span class="pre">root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><a class="headerlink" href="#scitex.writer.RevisionTree.root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.git_root">
+<span class="sig-name descname"><span class="pre">git_root</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.14)"><span class="pre">None</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.git_root" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.contents">
+<span class="sig-name descname"><span class="pre">contents</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">RevisionContents</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.contents" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.base">
+<span class="sig-name descname"><span class="pre">base</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.base" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.revision">
+<span class="sig-name descname"><span class="pre">revision</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.revision" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.readme">
+<span class="sig-name descname"><span class="pre">readme</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">DocumentSection</span></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.readme" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.archive">
+<span class="sig-name descname"><span class="pre">archive</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.archive" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.docs">
+<span class="sig-name descname"><span class="pre">docs</span></span><span class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/pathlib.html#pathlib.Path" title="(in Python v3.14)"><span class="pre">Path</span></a></span><span class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">None</span></span><a class="headerlink" href="#scitex.writer.RevisionTree.docs" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.__post_init__">
+<span class="sig-name descname"><span class="pre">__post_init__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html#RevisionTree.__post_init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.RevisionTree.__post_init__" title="Link to this definition"></a></dt>
+<dd><p>Initialize all instances.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="scitex.writer.RevisionTree.verify_structure">
+<span class="sig-name descname"><span class="pre">verify_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/scitex_writer/_dataclasses/tree/_RevisionTree.html#RevisionTree.verify_structure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#scitex.writer.RevisionTree.verify_structure" title="Link to this definition"></a></dt>
+<dd><p>Verify revision structure has required components.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Return type<span class="colon">:</span></dt>
+<dd class="field-odd"><p><span class="sphinx_autodoc_typehints-type"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">tuple</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code></a>, <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></a>[<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></a>]]</span></p>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><p>(is_valid, list_of_missing_items_with_paths)</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/cli.html b/src/scitex/_sphinx_html/source/cli.html
new file mode 100644
index 000000000..7c5b410ea
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/cli.html
@@ -0,0 +1,752 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>CLI Reference &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">CLI Reference</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/cli.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="cli-reference">
+<h1>CLI Reference<a class="headerlink" href="#cli-reference" title="Link to this heading"></a></h1>
+<p>SciTeX provides a unified command-line interface. All commands follow the
+pattern:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>&lt;module&gt;<span class="w"> </span>&lt;command&gt;<span class="w"> </span><span class="o">[</span>options<span class="o">]</span>
+</pre></div>
+</div>
+<p>Run <code class="docutils literal notranslate"><span class="pre">scitex</span> <span class="pre">--help-recursive</span></code> to see every available command.</p>
+<section id="general">
+<h2>General<a class="headerlink" href="#general" title="Link to this heading"></a></h2>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>--help-recursive<span class="w">        </span><span class="c1"># Show all commands across all modules</span>
+scitex<span class="w"> </span>list-python-apis<span class="w">        </span><span class="c1"># List all Python APIs (210 items)</span>
+scitex<span class="w"> </span>mcp<span class="w"> </span>list-tools<span class="w">          </span><span class="c1"># List all MCP tools (120+ tools)</span>
+</pre></div>
+</div>
+</section>
+<section id="scholar">
+<h2>Scholar<a class="headerlink" href="#scholar" title="Link to this heading"></a></h2>
+<p>Literature search, PDF management, and metadata enrichment.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>scholar<span class="w"> </span>fetch<span class="w"> </span>&lt;DOI&gt;<span class="w">     </span><span class="c1"># Download paper by DOI</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>bibtex<span class="w"> </span>&lt;file&gt;<span class="w">   </span><span class="c1"># Enrich BibTeX file with metadata</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>search<span class="w"> </span>&lt;query&gt;<span class="w">  </span><span class="c1"># Search for papers</span>
+</pre></div>
+</div>
+</section>
+<section id="stats">
+<h2>Stats<a class="headerlink" href="#stats" title="Link to this heading"></a></h2>
+<p>Statistical testing with automatic test recommendation.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>stats<span class="w"> </span>recommend<span class="w">         </span><span class="c1"># Suggest appropriate statistical tests</span>
+scitex<span class="w"> </span>stats<span class="w"> </span>run<span class="w"> </span>&lt;test&gt;<span class="w"> </span>&lt;data&gt;<span class="w"> </span><span class="c1"># Run a specific test on data</span>
+</pre></div>
+</div>
+</section>
+<section id="audio">
+<h2>Audio<a class="headerlink" href="#audio" title="Link to this heading"></a></h2>
+<p>Text-to-speech and audio playback.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>audio<span class="w"> </span>speak<span class="w"> </span>&lt;text&gt;<span class="w">      </span><span class="c1"># Convert text to speech</span>
+scitex<span class="w"> </span>audio<span class="w"> </span>play<span class="w"> </span>&lt;file&gt;<span class="w">       </span><span class="c1"># Play an audio file</span>
+</pre></div>
+</div>
+</section>
+<section id="capture">
+<h2>Capture<a class="headerlink" href="#capture" title="Link to this heading"></a></h2>
+<p>Screen capture and monitoring.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>capture<span class="w"> </span>snap<span class="w">            </span><span class="c1"># Take a screenshot</span>
+scitex<span class="w"> </span>capture<span class="w"> </span>monitor<span class="w">         </span><span class="c1"># Start screen monitoring</span>
+</pre></div>
+</div>
+</section>
+<section id="template">
+<h2>Template<a class="headerlink" href="#template" title="Link to this heading"></a></h2>
+<p>Project scaffolding from built-in templates.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>template<span class="w"> </span>clone<span class="w"> </span>&lt;type&gt;<span class="w"> </span>&lt;name&gt;
+</pre></div>
+</div>
+<p>Available template types:</p>
+<ul class="simple">
+<li><p><code class="docutils literal notranslate"><span class="pre">research</span></code> – Research project with session tracking</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pip</span></code> – Python pip package</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">paper</span></code> – LaTeX manuscript project</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">app</span></code> – SciTeX app with bridge integration</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">singularity</span></code> – Singularity container definition</p></li>
+</ul>
+</section>
+<section id="introspect">
+<h2>Introspect<a class="headerlink" href="#introspect" title="Link to this heading"></a></h2>
+<p>Python code introspection for exploring APIs.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>introspect<span class="w"> </span>api<span class="w"> </span>&lt;module&gt;<span class="w">       </span><span class="c1"># List APIs for a module</span>
+scitex<span class="w"> </span>introspect<span class="w"> </span><span class="nb">source</span><span class="w"> </span>&lt;<span class="k">function</span>&gt;<span class="w">  </span><span class="c1"># View source code of a function</span>
+</pre></div>
+</div>
+</section>
+<section id="dev">
+<h2>Dev<a class="headerlink" href="#dev" title="Link to this heading"></a></h2>
+<p>Ecosystem development and version management.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>dev<span class="w"> </span>versions<span class="w">            </span><span class="c1"># Show versions of all installed packages</span>
+scitex<span class="w"> </span>dev<span class="w"> </span>ecosystem<span class="w">           </span><span class="c1"># Manage ecosystem packages</span>
+</pre></div>
+</div>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/concepts.html b/src/scitex/_sphinx_html/source/concepts.html
new file mode 100644
index 000000000..e520c7b18
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/concepts.html
@@ -0,0 +1,902 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Core Concepts &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
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+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
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+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Core Concepts</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/concepts.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="core-concepts">
+<h1>Core Concepts<a class="headerlink" href="#core-concepts" title="Link to this heading"></a></h1>
+<p>This page explains the design patterns behind SciTeX. Understanding
+these patterns will help you use the toolkit effectively and extend it
+for your own workflows.</p>
+<section id="modular-architecture">
+<h2>Modular Architecture<a class="headerlink" href="#modular-architecture" title="Link to this heading"></a></h2>
+<p>SciTeX is not a monolith. Each module is backed by an independent
+package that can be installed and used on its own:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip<span class="w"> </span>install<span class="w"> </span>scitex-io<span class="w">       </span><span class="c1"># Use standalone: import scitex_io</span>
+pip<span class="w"> </span>install<span class="w"> </span>scitex-stats<span class="w">    </span><span class="c1"># Use standalone: import scitex_stats</span>
+pip<span class="w"> </span>install<span class="w"> </span>figrecipe<span class="w">       </span><span class="c1"># Use standalone: import figrecipe</span>
+</pre></div>
+</div>
+<p>When you install <code class="docutils literal notranslate"><span class="pre">scitex</span></code>, these packages are available under a
+unified namespace:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="s2">&quot;out.csv&quot;</span><span class="p">)</span>     <span class="c1"># scitex-io</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">run_test</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>          <span class="c1"># scitex-stats</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>               <span class="c1"># figrecipe</span>
+</pre></div>
+</div>
+<p><strong>Lazy loading</strong> ensures that importing <code class="docutils literal notranslate"><span class="pre">scitex</span></code> does not pull in every
+dependency. Modules are loaded only when first accessed. If you never
+touch <code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>, its dependencies are never imported and startup
+remains fast.</p>
+<p>The main <code class="docutils literal notranslate"><span class="pre">scitex</span></code> package itself contains no runtime logic for I/O,
+statistics, or plotting. It is an orchestrator: it re-exports
+sub-package APIs, provides the CLI entry point, hosts the MCP server,
+and owns the session decorator.</p>
+</section>
+<section id="session-decorator">
+<h2>Session Decorator<a class="headerlink" href="#session-decorator" title="Link to this heading"></a></h2>
+<p>The <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> decorator converts a plain Python function into a
+reproducible, CLI-enabled experiment.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span>
+    <span class="n">n_epochs</span><span class="o">=</span><span class="mi">50</span><span class="p">,</span>
+    <span class="n">learning_rate</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span>
+    <span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>
+    <span class="n">logger</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>
+<span class="p">):</span>
+    <span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Training for </span><span class="si">{</span><span class="n">n_epochs</span><span class="si">}</span><span class="s2"> epochs at lr=</span><span class="si">{</span><span class="n">learning_rate</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+    <span class="k">return</span> <span class="mi">0</span>
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="n">main</span><span class="p">()</span>
+</pre></div>
+</div>
+<p><strong>Why it exists.</strong> Research scripts tend to accumulate boilerplate:
+argument parsing, output directory creation, logging setup, random seed
+management, config file loading. The session decorator handles all of
+these so that the function body contains only experiment logic.</p>
+<p><strong>What it provides:</strong></p>
+<ol class="arabic">
+<li><p><strong>Automatic CLI.</strong> Function parameters become command-line arguments.
+<code class="docutils literal notranslate"><span class="pre">n_epochs=50</span></code> becomes <code class="docutils literal notranslate"><span class="pre">--n-epochs</span> <span class="pre">50</span></code> with no argparse code.</p></li>
+<li><p><strong>Config injection.</strong> Parameters in <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code> are aggregated
+into a single <code class="docutils literal notranslate"><span class="pre">CONFIG</span></code> dict and injected at runtime.</p></li>
+<li><p><strong>Reproducibility.</strong> Random seeds are fixed. All parameters, stdout,
+and stderr are logged to the output directory.</p></li>
+<li><p><strong>Output organization.</strong> Each run gets a timestamped directory under
+<code class="docutils literal notranslate"><span class="pre">script_out/</span></code>:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>script_out/FINISHED_SUCCESS/2026-03-18_14-30-00_AbC1/
++-- CONFIGS/CONFIG.yaml    # All parameters
++-- logs/stdout.log        # Captured output
++-- logs/stderr.log        # Captured errors
+</pre></div>
+</div>
+</li>
+</ol>
+<p>Parameters marked <code class="docutils literal notranslate"><span class="pre">stx.session.INJECTED</span></code> are sentinel values. The
+decorator replaces them with runtime objects (logger, config, plotting
+backend, color palette, random generator). You never pass these
+yourself – they signal to the decorator what to inject.</p>
+</section>
+<section id="unified-i-o">
+<h2>Unified I/O<a class="headerlink" href="#unified-i-o" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code> and <code class="docutils literal notranslate"><span class="pre">stx.io.load</span></code> provide a single interface for 30+
+file formats. The format is determined by the file extension:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">dataframe</span><span class="p">,</span> <span class="s2">&quot;results.csv&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">array</span><span class="p">,</span> <span class="s2">&quot;weights.npy&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;figure.png&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">config</span><span class="p">,</span> <span class="s2">&quot;params.yaml&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>The same call pattern works for every type. No need to remember
+<code class="docutils literal notranslate"><span class="pre">pd.to_csv</span></code>, <code class="docutils literal notranslate"><span class="pre">np.save</span></code>, <code class="docutils literal notranslate"><span class="pre">fig.savefig</span></code>, or <code class="docutils literal notranslate"><span class="pre">yaml.dump</span></code>.</p>
+<p><strong>Figure data export.</strong> When saving a matplotlib figure, SciTeX
+automatically exports the plotted data as a CSV file alongside the
+image. This is a deliberate design choice: every figure in a publication
+should be backed by accessible data, so that reviewers and readers can
+verify the plot independently.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;plot.png&quot;</span><span class="p">)</span>
+<span class="c1"># Creates: plot.png  (the image)</span>
+<span class="c1">#          plot.csv  (the underlying data)</span>
+</pre></div>
+</div>
+<p>This behavior is powered by figrecipe’s <code class="docutils literal notranslate"><span class="pre">RecordingFigure</span></code>, which
+tracks all data passed to plotting calls and serializes it on save.</p>
+</section>
+<section id="three-interfaces">
+<h2>Three Interfaces<a class="headerlink" href="#three-interfaces" title="Link to this heading"></a></h2>
+<p>Every SciTeX feature is accessible through three interfaces:</p>
+<ol class="arabic simple">
+<li><p><strong>Python API</strong> – for scripts and notebooks</p></li>
+<li><p><strong>CLI</strong> – for shell workflows and automation</p></li>
+<li><p><strong>MCP</strong> – for AI agents via the Model Context Protocol</p></li>
+</ol>
+<p>For example, running a statistical test:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Python API</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">run_test</span><span class="p">(</span><span class="s2">&quot;ttest_ind&quot;</span><span class="p">,</span> <span class="n">group1</span><span class="p">,</span> <span class="n">group2</span><span class="p">)</span>
+</pre></div>
+</div>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># CLI</span>
+scitex<span class="w"> </span>stats<span class="w"> </span>run<span class="w"> </span>ttest_ind<span class="w"> </span>--data<span class="w"> </span>data.csv
+</pre></div>
+</div>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span># MCP tool (called by AI agents)
+stats_run_test(test=&quot;ttest_ind&quot;, data=[[1,2,3],[4,5,6]])
+</pre></div>
+</div>
+<p>This three-interface design means that any workflow a human builds in
+Python can be replicated by an AI agent through MCP, or scripted in a
+shell pipeline through the CLI. The interfaces share the same
+underlying implementation, so behavior is identical across all three.</p>
+<p>The MCP server aggregates 120+ tools from all sub-packages. AI agents
+can discover available tools, read documentation, and execute full
+research pipelines – from literature search to manuscript compilation –
+without human intervention.</p>
+</section>
+<section id="delegation-pattern">
+<h2>Delegation Pattern<a class="headerlink" href="#delegation-pattern" title="Link to this heading"></a></h2>
+<p>The <code class="docutils literal notranslate"><span class="pre">scitex</span></code> package is intentionally thin. It delegates all domain
+logic to standalone packages:</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 25.0%" />
+<col style="width: 25.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>scitex module</p></th>
+<th class="head"><p>Standalone package</p></th>
+<th class="head"><p>Responsibility</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">stx.io</span></code></p></td>
+<td><p>scitex-io</p></td>
+<td><p>File I/O (30+ formats)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">stx.stats</span></code></p></td>
+<td><p>scitex-stats</p></td>
+<td><p>Statistical testing (23 tests)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">stx.plt</span></code></p></td>
+<td><p>figrecipe</p></td>
+<td><p>Publication-ready figures</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">stx.writer</span></code></p></td>
+<td><p>scitex-writer</p></td>
+<td><p>LaTeX manuscript compilation</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code></p></td>
+<td><p>scitex-scholar</p></td>
+<td><p>Literature search, PDF download</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code></p></td>
+<td><p>scitex-dataset</p></td>
+<td><p>Scientific dataset access</p></td>
+</tr>
+</tbody>
+</table>
+<p><strong>Why delegation?</strong> Each sub-package has its own release cycle, test
+suite, and dependency tree. A bug fix in <code class="docutils literal notranslate"><span class="pre">scitex-io</span></code> does not require
+releasing all of <code class="docutils literal notranslate"><span class="pre">scitex</span></code>. Users who only need file I/O can
+<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-io</span></code> without pulling in matplotlib, LaTeX tooling,
+or audio dependencies.</p>
+<p>From the user’s perspective, the delegation is invisible. A single
+<code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex</span> <span class="pre">as</span> <span class="pre">stx</span></code> provides access to everything. The lazy loader
+in <code class="docutils literal notranslate"><span class="pre">scitex.__init__</span></code> resolves <code class="docutils literal notranslate"><span class="pre">stx.io</span></code> to the <code class="docutils literal notranslate"><span class="pre">scitex_io</span></code> package
+on first access.</p>
+</section>
+<section id="configuration">
+<h2>Configuration<a class="headerlink" href="#configuration" title="Link to this heading"></a></h2>
+<p>SciTeX uses a layered configuration system:</p>
+<p><strong>Project-level config (YAML files)</strong></p>
+<p>Place YAML files in <code class="docutils literal notranslate"><span class="pre">./config/</span></code> at your project root. The session
+decorator aggregates all files in this directory into a single <code class="docutils literal notranslate"><span class="pre">CONFIG</span></code>
+dict:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>config/
++-- model.yaml      # {&quot;hidden_size&quot;: 256, &quot;n_layers&quot;: 4}
++-- training.yaml   # {&quot;epochs&quot;: 100, &quot;batch_size&quot;: 32}
+</pre></div>
+</div>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span><span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">):</span>
+    <span class="nb">print</span><span class="p">(</span><span class="n">CONFIG</span><span class="p">[</span><span class="s2">&quot;hidden_size&quot;</span><span class="p">])</span>  <span class="c1"># 256</span>
+    <span class="nb">print</span><span class="p">(</span><span class="n">CONFIG</span><span class="p">[</span><span class="s2">&quot;epochs&quot;</span><span class="p">])</span>       <span class="c1"># 100</span>
+</pre></div>
+</div>
+<p><strong>Environment-level config (.env.d/)</strong></p>
+<p>Credentials, API keys, and machine-specific paths live in <code class="docutils literal notranslate"><span class="pre">.env.d/</span></code>:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>.env.d/
++-- entry.src            # Single entry point (source this)
++-- 00_scitex.env        # Base paths
++-- 01_scholar.env       # OpenAthens credentials
++-- 01_audio.env         # TTS backend config
+</pre></div>
+</div>
+<p>Source the entry point in your shell profile:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># In ~/.bashrc or ~/.zshrc</span>
+<span class="nb">source</span><span class="w"> </span>/path/to/.env.d/entry.src
+</pre></div>
+</div>
+<p><strong>MCP environment (.src files)</strong></p>
+<p>For AI agent deployments, a single <code class="docutils literal notranslate"><span class="pre">.src</span></code> file bundles all environment
+variables. The MCP server loads it at startup via <code class="docutils literal notranslate"><span class="pre">SCITEX_ENV_SRC</span></code>:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">export</span><span class="w"> </span><span class="nv">SCITEX_ENV_SRC</span><span class="o">=</span>~/.scitex/scitex/local.src
+</pre></div>
+</div>
+<p>This keeps the <code class="docutils literal notranslate"><span class="pre">.mcp.json</span></code> configuration static across machines –
+only the <code class="docutils literal notranslate"><span class="pre">.src</span></code> file changes between local and remote environments.</p>
+<p>The configuration hierarchy is: CLI arguments override YAML config,
+which overrides environment variables, which override built-in defaults.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
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diff --git a/src/scitex/_sphinx_html/source/ecosystem.html b/src/scitex/_sphinx_html/source/ecosystem.html
new file mode 100644
index 000000000..7fc78d033
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/ecosystem.html
@@ -0,0 +1,813 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Ecosystem &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
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+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Ecosystem</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/ecosystem.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="ecosystem">
+<h1>Ecosystem<a class="headerlink" href="#ecosystem" title="Link to this heading"></a></h1>
+<p>SciTeX is a modular toolkit composed of standalone packages. Each package
+can be installed and used independently, or accessed through the unified
+<code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex</span></code> interface.</p>
+<section id="delegation-pattern">
+<h2>Delegation Pattern<a class="headerlink" href="#delegation-pattern" title="Link to this heading"></a></h2>
+<p>The <code class="docutils literal notranslate"><span class="pre">scitex</span></code> package itself contains no runtime logic. It acts as an
+orchestrator that re-exports functionality from sub-packages via lazy
+imports. When you write <code class="docutils literal notranslate"><span class="pre">scitex.io.load(&quot;data.csv&quot;)</span></code>, the call is
+delegated to the <code class="docutils literal notranslate"><span class="pre">scitex_io</span></code> package under the hood.</p>
+<p>This means:</p>
+<ul class="simple">
+<li><p><strong>Standalone use</strong>: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-io</span></code> then <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex_io</span></code></p></li>
+<li><p><strong>Unified use</strong>: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex[io]</span></code> then <code class="docutils literal notranslate"><span class="pre">import</span> <span class="pre">scitex;</span> <span class="pre">scitex.io.load(...)</span></code></p></li>
+</ul>
+<p>Both paths execute the same code. The <code class="docutils literal notranslate"><span class="pre">scitex</span></code> package simply provides
+the namespace glue.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># These are equivalent:</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">scitex_io</span>
+<span class="n">scitex_io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span>
+<span class="n">scitex</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="package-reference">
+<h2>Package Reference<a class="headerlink" href="#package-reference" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 18.0%" />
+<col style="width: 22.0%" />
+<col style="width: 40.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Package</p></th>
+<th class="head"><p>scitex Module</p></th>
+<th class="head"><p>PyPI</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p>scitex-io</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.io</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-io</span></code></p></td>
+<td><p>Unified file I/O for 30+ formats</p></td>
+</tr>
+<tr class="row-odd"><td><p>scitex-stats</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.stats</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-stats</span></code></p></td>
+<td><p>Publication-ready statistics (23+ tests)</p></td>
+</tr>
+<tr class="row-even"><td><p>figrecipe</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.plt</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">figrecipe</span></code></p></td>
+<td><p>Publication-ready matplotlib figures</p></td>
+</tr>
+<tr class="row-odd"><td><p>scitex-writer</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.writer</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-writer</span></code></p></td>
+<td><p>LaTeX manuscript compilation</p></td>
+</tr>
+<tr class="row-even"><td><p>scitex-scholar</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.scholar</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-scholar</span></code></p></td>
+<td><p>Literature search and management</p></td>
+</tr>
+<tr class="row-odd"><td><p>scitex-audio</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.audio</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-audio</span></code></p></td>
+<td><p>Text-to-speech and audio</p></td>
+</tr>
+<tr class="row-even"><td><p>scitex-dev</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.dev</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-dev</span></code></p></td>
+<td><p>Developer tools, ecosystem management</p></td>
+</tr>
+<tr class="row-odd"><td><p>scitex-clew</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.clew</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-clew</span></code></p></td>
+<td><p>Hash-based reproducibility verification</p></td>
+</tr>
+<tr class="row-even"><td><p>scitex-linter</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.linter</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-linter</span></code></p></td>
+<td><p>AST-based code pattern checking</p></td>
+</tr>
+<tr class="row-odd"><td><p>scitex-dataset</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.dataset</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-dataset</span></code></p></td>
+<td><p>Scientific dataset access (DANDI, OpenNeuro, PhysioNet)</p></td>
+</tr>
+<tr class="row-even"><td><p>crossref-local</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.scholar.crossref</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">crossref-local</span></code></p></td>
+<td><p>Local CrossRef database (167M+ papers)</p></td>
+</tr>
+<tr class="row-odd"><td><p>openalex-local</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.scholar.openalex</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">openalex-local</span></code></p></td>
+<td><p>Local OpenAlex database (250M+ papers)</p></td>
+</tr>
+<tr class="row-even"><td><p>socialia</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.social</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">socialia</span></code></p></td>
+<td><p>Social media posting (Twitter, LinkedIn)</p></td>
+</tr>
+<tr class="row-odd"><td><p>scitex-app</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.app</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-app</span></code></p></td>
+<td><p>Runtime SDK for SciTeX apps</p></td>
+</tr>
+<tr class="row-even"><td><p>scitex-cloud</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.cloud</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-cloud</span></code></p></td>
+<td><p>Cloud platform integration</p></td>
+</tr>
+<tr class="row-odd"><td><p>scitex-notification</p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">scitex.notify</span></code></p></td>
+<td><p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">scitex-notification</span></code></p></td>
+<td><p>Multi-backend notifications</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="installation">
+<h2>Installation<a class="headerlink" href="#installation" title="Link to this heading"></a></h2>
+<p>Install individual packages or use extras through the main package:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Full installation (all packages)</span>
+pip<span class="w"> </span>install<span class="w"> </span>scitex<span class="o">[</span>all<span class="o">]</span>
+
+<span class="c1"># Typical research setup</span>
+pip<span class="w"> </span>install<span class="w"> </span>scitex<span class="o">[</span>plt,stats,scholar<span class="o">]</span>
+
+<span class="c1"># Individual standalone package</span>
+pip<span class="w"> </span>install<span class="w"> </span>figrecipe
+</pre></div>
+</div>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/gallery.html b/src/scitex/_sphinx_html/source/gallery.html
new file mode 100644
index 000000000..0ba421453
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/gallery.html
@@ -0,0 +1,1018 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Plot Gallery &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Plot Gallery</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/gallery.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="plot-gallery">
+<h1>Plot Gallery<a class="headerlink" href="#plot-gallery" title="Link to this heading"></a></h1>
+<p><code class="docutils literal notranslate"><span class="pre">stx.plt</span></code> wraps matplotlib axes with data-tracking methods.
+All <code class="docutils literal notranslate"><span class="pre">plot_*</span></code> methods record data for automatic CSV export.</p>
+<p>Generate the full gallery locally:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">gallery</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">output_dir</span><span class="o">=</span><span class="s2">&quot;./gallery&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<section id="line-plots">
+<h2>Line Plots<a class="headerlink" href="#line-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id1">
+<a class="reference internal image-reference" href="source/_static/gallery/line/stx_line.png"><img alt="source/_static/gallery/line/stx_line.png" src="source/_static/gallery/line/stx_line.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_line(x,</span> <span class="pre">y)</span></code></span><a class="headerlink" href="#id1" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id2">
+<a class="reference internal image-reference" href="source/_static/gallery/line/stx_shaded_line.png"><img alt="source/_static/gallery/line/stx_shaded_line.png" src="source/_static/gallery/line/stx_shaded_line.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_shaded_line(x,</span> <span class="pre">y_mean,</span> <span class="pre">y_std)</span></code></span><a class="headerlink" href="#id2" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id3">
+<a class="reference internal image-reference" href="source/_static/gallery/line/plot.png"><img alt="source/_static/gallery/line/plot.png" src="source/_static/gallery/line/plot.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot(x,</span> <span class="pre">y)</span></code> (standard matplotlib)</span><a class="headerlink" href="#id3" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id4">
+<a class="reference internal image-reference" href="source/_static/gallery/line/step.png"><img alt="source/_static/gallery/line/step.png" src="source/_static/gallery/line/step.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.step(x,</span> <span class="pre">y)</span></code></span><a class="headerlink" href="#id4" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="statistical-plots">
+<h2>Statistical Plots<a class="headerlink" href="#statistical-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id5">
+<a class="reference internal image-reference" href="source/_static/gallery/statistical/stx_mean_std.png"><img alt="source/_static/gallery/statistical/stx_mean_std.png" src="source/_static/gallery/statistical/stx_mean_std.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_mean_std(groups)</span></code></span><a class="headerlink" href="#id5" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id6">
+<a class="reference internal image-reference" href="source/_static/gallery/statistical/stx_mean_ci.png"><img alt="source/_static/gallery/statistical/stx_mean_ci.png" src="source/_static/gallery/statistical/stx_mean_ci.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_mean_ci(groups)</span></code></span><a class="headerlink" href="#id6" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id7">
+<a class="reference internal image-reference" href="source/_static/gallery/statistical/stx_median_iqr.png"><img alt="source/_static/gallery/statistical/stx_median_iqr.png" src="source/_static/gallery/statistical/stx_median_iqr.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_median_iqr(groups)</span></code></span><a class="headerlink" href="#id7" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id8">
+<a class="reference internal image-reference" href="source/_static/gallery/statistical/stx_errorbar.png"><img alt="source/_static/gallery/statistical/stx_errorbar.png" src="source/_static/gallery/statistical/stx_errorbar.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_errorbar(x,</span> <span class="pre">y,</span> <span class="pre">yerr)</span></code></span><a class="headerlink" href="#id8" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="distribution-plots">
+<h2>Distribution Plots<a class="headerlink" href="#distribution-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id9">
+<a class="reference internal image-reference" href="source/_static/gallery/distribution/stx_kde.png"><img alt="source/_static/gallery/distribution/stx_kde.png" src="source/_static/gallery/distribution/stx_kde.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_kde(data)</span></code></span><a class="headerlink" href="#id9" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id10">
+<a class="reference internal image-reference" href="source/_static/gallery/distribution/stx_ecdf.png"><img alt="source/_static/gallery/distribution/stx_ecdf.png" src="source/_static/gallery/distribution/stx_ecdf.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_ecdf(data)</span></code></span><a class="headerlink" href="#id10" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id11">
+<a class="reference internal image-reference" href="source/_static/gallery/distribution/stx_joyplot.png"><img alt="source/_static/gallery/distribution/stx_joyplot.png" src="source/_static/gallery/distribution/stx_joyplot.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_joyplot(groups)</span></code></span><a class="headerlink" href="#id11" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id12">
+<a class="reference internal image-reference" href="source/_static/gallery/distribution/hist.png"><img alt="source/_static/gallery/distribution/hist.png" src="source/_static/gallery/distribution/hist.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.hist(data)</span></code></span><a class="headerlink" href="#id12" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="categorical-plots">
+<h2>Categorical Plots<a class="headerlink" href="#categorical-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id13">
+<a class="reference internal image-reference" href="source/_static/gallery/categorical/stx_violin.png"><img alt="source/_static/gallery/categorical/stx_violin.png" src="source/_static/gallery/categorical/stx_violin.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_violin(groups)</span></code></span><a class="headerlink" href="#id13" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id14">
+<a class="reference internal image-reference" href="source/_static/gallery/categorical/stx_box.png"><img alt="source/_static/gallery/categorical/stx_box.png" src="source/_static/gallery/categorical/stx_box.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_box(groups)</span></code></span><a class="headerlink" href="#id14" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id15">
+<a class="reference internal image-reference" href="source/_static/gallery/categorical/stx_bar.png"><img alt="source/_static/gallery/categorical/stx_bar.png" src="source/_static/gallery/categorical/stx_bar.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_bar(labels,</span> <span class="pre">values)</span></code></span><a class="headerlink" href="#id15" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id16">
+<a class="reference internal image-reference" href="source/_static/gallery/categorical/stx_barh.png"><img alt="source/_static/gallery/categorical/stx_barh.png" src="source/_static/gallery/categorical/stx_barh.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_barh(labels,</span> <span class="pre">values)</span></code></span><a class="headerlink" href="#id16" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="scatter-plots">
+<h2>Scatter Plots<a class="headerlink" href="#scatter-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id17">
+<a class="reference internal image-reference" href="source/_static/gallery/scatter/stx_scatter.png"><img alt="source/_static/gallery/scatter/stx_scatter.png" src="source/_static/gallery/scatter/stx_scatter.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_scatter(x,</span> <span class="pre">y)</span></code></span><a class="headerlink" href="#id17" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id18">
+<a class="reference internal image-reference" href="source/_static/gallery/scatter/scatter.png"><img alt="source/_static/gallery/scatter/scatter.png" src="source/_static/gallery/scatter/scatter.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.scatter(x,</span> <span class="pre">y)</span></code> (standard matplotlib)</span><a class="headerlink" href="#id18" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="heatmaps-and-grids">
+<h2>Heatmaps and Grids<a class="headerlink" href="#heatmaps-and-grids" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id19">
+<a class="reference internal image-reference" href="source/_static/gallery/grid/stx_heatmap.png"><img alt="source/_static/gallery/grid/stx_heatmap.png" src="source/_static/gallery/grid/stx_heatmap.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_heatmap(matrix)</span></code></span><a class="headerlink" href="#id19" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id20">
+<a class="reference internal image-reference" href="source/_static/gallery/grid/stx_conf_mat.png"><img alt="source/_static/gallery/grid/stx_conf_mat.png" src="source/_static/gallery/grid/stx_conf_mat.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_conf_mat(cm)</span></code></span><a class="headerlink" href="#id20" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+<tr class="row-even"><td><figure class="align-default" id="id21">
+<a class="reference internal image-reference" href="source/_static/gallery/grid/stx_image.png"><img alt="source/_static/gallery/grid/stx_image.png" src="source/_static/gallery/grid/stx_image.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_image(img)</span></code></span><a class="headerlink" href="#id21" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id22">
+<a class="reference internal image-reference" href="source/_static/gallery/grid/stx_imshow.png"><img alt="source/_static/gallery/grid/stx_imshow.png" src="source/_static/gallery/grid/stx_imshow.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_imshow(data)</span></code></span><a class="headerlink" href="#id22" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="area-plots">
+<h2>Area Plots<a class="headerlink" href="#area-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id23">
+<a class="reference internal image-reference" href="source/_static/gallery/area/stx_fill_between.png"><img alt="source/_static/gallery/area/stx_fill_between.png" src="source/_static/gallery/area/stx_fill_between.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_fill_between(x,</span> <span class="pre">y1,</span> <span class="pre">y2)</span></code></span><a class="headerlink" href="#id23" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id24">
+<a class="reference internal image-reference" href="source/_static/gallery/area/stx_fillv.png"><img alt="source/_static/gallery/area/stx_fillv.png" src="source/_static/gallery/area/stx_fillv.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_fillv(x_start,</span> <span class="pre">x_end)</span></code></span><a class="headerlink" href="#id24" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="special-plots">
+<h2>Special Plots<a class="headerlink" href="#special-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id25">
+<a class="reference internal image-reference" href="source/_static/gallery/special/stx_raster.png"><img alt="source/_static/gallery/special/stx_raster.png" src="source/_static/gallery/special/stx_raster.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_raster(spike_times)</span></code></span><a class="headerlink" href="#id25" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+<td><figure class="align-default" id="id26">
+<a class="reference internal image-reference" href="source/_static/gallery/special/stx_rectangle.png"><img alt="source/_static/gallery/special/stx_rectangle.png" src="source/_static/gallery/special/stx_rectangle.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_rectangle(xy,</span> <span class="pre">w,</span> <span class="pre">h)</span></code></span><a class="headerlink" href="#id26" title="Link to this image"></a></p>
+</figcaption>
+</figure>
+</td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="contour-and-vector-plots">
+<h2>Contour and Vector Plots<a class="headerlink" href="#contour-and-vector-plots" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 50.0%" />
+<col style="width: 50.0%" />
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+<tbody>
+<tr class="row-odd"><td><figure class="align-default" id="id27">
+<a class="reference internal image-reference" href="source/_static/gallery/contour/stx_contour.png"><img alt="source/_static/gallery/contour/stx_contour.png" src="source/_static/gallery/contour/stx_contour.png" style="width: 100%;" />
+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.plot_contour(x,</span> <span class="pre">y,</span> <span class="pre">z)</span></code></span><a class="headerlink" href="#id27" title="Link to this image"></a></p>
+</figcaption>
+</figure>
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+</a>
+<figcaption>
+<p><span class="caption-text"><code class="docutils literal notranslate"><span class="pre">ax.quiver(x,</span> <span class="pre">y,</span> <span class="pre">u,</span> <span class="pre">v)</span></code></span><a class="headerlink" href="#id28" title="Link to this image"></a></p>
+</figcaption>
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new file mode 100644
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">SciTeX Documentation</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/index.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="scitex-documentation">
+<h1>SciTeX Documentation<a class="headerlink" href="#scitex-documentation" title="Link to this heading"></a></h1>
+<p>SciTeX is a modular Python toolkit for research automation. It provides a
+unified interface across the full scientific workflow: from data loading and
+statistical analysis, through publication-ready plotting and manuscript
+compilation, to AI-assisted literature review. Every module is installable
+independently, and the entire surface area is exposed to AI agents through
+an MCP (Model Context Protocol) server.</p>
+<section id="key-features">
+<h2>Key Features<a class="headerlink" href="#key-features" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>Session decorator</strong> – wrap any experiment function with <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>
+to get automatic directory management, reproducibility logging, and
+error-safe cleanup.</p></li>
+<li><p><strong>Unified I/O</strong> – <code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code> / <code class="docutils literal notranslate"><span class="pre">stx.io.load</span></code> handle 40+ formats
+(CSV, HDF5, YAML, images, PDFs, …) through a single call.</p></li>
+<li><p><strong>Statistics</strong> – <code class="docutils literal notranslate"><span class="pre">stx.stats</span></code> provides hypothesis testing, effect sizes,
+power analysis, and multiple-comparison correction with APA-formatted
+output.</p></li>
+<li><p><strong>Plotting</strong> – <code class="docutils literal notranslate"><span class="pre">stx.plt</span></code> produces publication-ready figures via
+<a class="reference external" href="https://github.com/ywatanabe1989/figrecipe">figrecipe</a>, with
+millimetre-based layouts, journal style presets, and automatic CSV data
+export alongside every saved figure.</p></li>
+<li><p><strong>Manuscript writing</strong> – <code class="docutils literal notranslate"><span class="pre">stx.writer</span></code> compiles LaTeX manuscripts,
+manages BibTeX, and exports to Overleaf.</p></li>
+<li><p><strong>Literature management</strong> – <code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code> searches CrossRef, OpenAlex,
+and Google Scholar; downloads and parses PDFs; and maintains a local
+citation database.</p></li>
+<li><p><strong>MCP for AI agents</strong> – every capability above is available as a
+tool call through the built-in MCP server, so LLM agents can run
+statistics, create figures, and compile papers programmatically.</p></li>
+</ul>
+</section>
+<section id="getting-started">
+<h2>Getting Started<a class="headerlink" href="#getting-started" title="Link to this heading"></a></h2>
+<ol class="arabic simple">
+<li><p><a class="reference internal" href="installation.html"><span class="doc">Installation</span></a> – install the core package and choose the extras you
+need.</p></li>
+<li><p><a class="reference internal" href="quickstart.html"><span class="doc">Quickstart</span></a> – a five-minute walkthrough of the session decorator,
+I/O, and plotting.</p></li>
+<li><p><a class="reference internal" href="api/index.html"><span class="doc">API Reference</span></a> – full API reference generated from docstrings.</p></li>
+</ol>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#development-install">Development Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quickstart</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#session-decorator">Session Decorator</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#unified-file-i-o">Unified File I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#statistical-analysis">Statistical Analysis</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#publication-ready-figures">Publication-Ready Figures</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#literature-management">Literature Management</a></li>
+<li class="toctree-l2"><a class="reference internal" href="quickstart.html#cli-usage">CLI Usage</a></li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Guides</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="concepts.html#modular-architecture">Modular Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="concepts.html#session-decorator">Session Decorator</a></li>
+<li class="toctree-l2"><a class="reference internal" href="concepts.html#unified-i-o">Unified I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="concepts.html#three-interfaces">Three Interfaces</a></li>
+<li class="toctree-l2"><a class="reference internal" href="concepts.html#delegation-pattern">Delegation Pattern</a></li>
+<li class="toctree-l2"><a class="reference internal" href="concepts.html#configuration">Configuration</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="ecosystem.html">Ecosystem</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="ecosystem.html#delegation-pattern">Delegation Pattern</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ecosystem.html#package-reference">Package Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ecosystem.html#installation">Installation</a></li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Interfaces</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="cli.html">CLI Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#general">General</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#scholar">Scholar</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#stats">Stats</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#audio">Audio</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#capture">Capture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#template">Template</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#introspect">Introspect</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cli.html#dev">Dev</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="mcp.html">MCP Server</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="mcp.html#what-is-mcp">What is MCP?</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mcp.html#setup">Setup</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mcp.html#tool-categories">Tool Categories</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mcp.html#example-workflow">Example Workflow</a></li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="api/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/io.html">I/O Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/plt.html">scitex.plt</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/dataset.html">Dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/app.html">App Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/cloud.html">Cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/capture.html">Capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/audio.html">Audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/notification.html">Notification Module (<code class="docutils literal notranslate"><span class="pre">stx.notification</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/dev.html">Dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/linter.html">Linter Module (<code class="docutils literal notranslate"><span class="pre">stx.linter</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="api/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+</ul>
+</div>
+</section>
+</section>
+<section id="indices-and-tables">
+<h1>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Link to this heading"></a></h1>
+<ul class="simple">
+<li><p><a class="reference internal" href="../genindex.html"><span class="std std-ref">Index</span></a></p></li>
+<li><p><a class="reference internal" href="../py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
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+</ul>
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diff --git a/src/scitex/_sphinx_html/source/installation.html b/src/scitex/_sphinx_html/source/installation.html
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@@ -0,0 +1,840 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
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+  <title>Installation &mdash; SciTeX v0.0.0</title>
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+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
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+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cloud.html">cloud Module (<code class="docutils literal notranslate"><span class="pre">stx.cloud</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/container.html">container Module (<code class="docutils literal notranslate"><span class="pre">stx.container</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tunnel.html">tunnel Module (<code class="docutils literal notranslate"><span class="pre">stx.tunnel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cli.html">cli Module (<code class="docutils literal notranslate"><span class="pre">stx.cli</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/browser.html">browser Module (<code class="docutils literal notranslate"><span class="pre">stx.browser</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notify.html">notify Module (<code class="docutils literal notranslate"><span class="pre">stx.notify</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/social.html">social Module (<code class="docutils literal notranslate"><span class="pre">stx.social</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Installation</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/installation.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="installation">
+<h1>Installation<a class="headerlink" href="#installation" title="Link to this heading"></a></h1>
+<section id="requirements">
+<h2>Requirements<a class="headerlink" href="#requirements" title="Link to this heading"></a></h2>
+<ul class="simple">
+<li><p><strong>Python 3.10+</strong></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">uv</span></code> (strongly recommended) — install with <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">uv</span></code> or
+<code class="docutils literal notranslate"><span class="pre">curl</span> <span class="pre">-LsSf</span> <span class="pre">https://astral.sh/uv/install.sh</span> <span class="pre">|</span> <span class="pre">sh</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pip</span></code> 21+ also works, but expect 30–90 min for <code class="docutils literal notranslate"><span class="pre">scitex[all]</span></code>
+(see warning below)</p></li>
+</ul>
+<div class="admonition warning">
+<p class="admonition-title">Warning</p>
+<p><code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">&quot;scitex[all]&quot;</span></code> typically takes <strong>30–90 minutes</strong> because
+pip’s serial resolver walks version histories of the large transitive
+dependency set (numpy/pandas/torch/jax/playwright/openalex-local/…).
+Use <strong>uv</strong> instead — it resolves the same set in parallel in <strong>1–3
+minutes</strong>. Every <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span></code> line on this page also works as
+<code class="docutils literal notranslate"><span class="pre">uv</span> <span class="pre">pip</span> <span class="pre">install</span></code> and we recommend the uv form.</p>
+</div>
+</section>
+<section id="core-install">
+<h2>Core Install<a class="headerlink" href="#core-install" title="Link to this heading"></a></h2>
+<p>The base package pulls in only lightweight dependencies and gives you access
+to session management, path utilities, string helpers, and the module
+discovery system.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>uv<span class="w"> </span>pip<span class="w"> </span>install<span class="w"> </span>scitex<span class="w">          </span><span class="c1"># recommended</span>
+pip<span class="w"> </span>install<span class="w"> </span>scitex<span class="w">              </span><span class="c1"># also works, slower for [all]</span>
+</pre></div>
+</div>
+</section>
+<section id="recommended-install-everything">
+<h2>Recommended: Install Everything<a class="headerlink" href="#recommended-install-everything" title="Link to this heading"></a></h2>
+<p>If you want the full experience (plotting, statistics, I/O, scholar, writer,
+and every other module):</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>uv<span class="w"> </span>pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[all]&quot;</span><span class="w">   </span><span class="c1"># ~3 min</span>
+pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[all]&quot;</span><span class="w">       </span><span class="c1"># ~30–90 min (resolver thrash)</span>
+</pre></div>
+</div>
+</section>
+<section id="research-workflow">
+<h2>Research Workflow<a class="headerlink" href="#research-workflow" title="Link to this heading"></a></h2>
+<p>For a typical research project you need figures, statistics, and literature
+search but not audio, browser automation, or cloud tools:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[plt,stats,scholar]&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="per-module-extras">
+<h2>Per-Module Extras<a class="headerlink" href="#per-module-extras" title="Link to this heading"></a></h2>
+<p>Install only what you need. Each extra maps to a self-contained capability.</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 21.4%" />
+<col style="width: 78.6%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Extra</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">plt</span></code></p></td>
+<td><p>Publication-ready figures via figrecipe (matplotlib, seaborn, Pillow)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">stats</span></code></p></td>
+<td><p>Hypothesis testing, effect sizes, power analysis (scitex-stats, scipy, statsmodels)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">io</span></code></p></td>
+<td><p>Unified I/O for 40+ formats (HDF5, Excel, YAML, PDF, images, …)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">scholar</span></code></p></td>
+<td><p>Literature search and PDF management (CrossRef, OpenAlex, Semantic Scholar)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">writer</span></code></p></td>
+<td><p>LaTeX manuscript compilation, BibTeX management, Overleaf export</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">audio</span></code></p></td>
+<td><p>Text-to-speech and audio utilities (scitex-audio)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">ai</span></code></p></td>
+<td><p>LLM APIs (OpenAI, Anthropic, Google, Groq) and ML tools (scikit-learn)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">browser</span></code></p></td>
+<td><p>Web automation via Playwright</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">capture</span></code></p></td>
+<td><p>Screenshot capture (mss, Playwright)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">dataset</span></code></p></td>
+<td><p>Scientific dataset access (DANDI, OpenNeuro, PhysioNet)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">cloud</span></code></p></td>
+<td><p>Cloud integration utilities</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">app</span></code></p></td>
+<td><p>Unified file storage SDK (scitex-app)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">session</span></code></p></td>
+<td><p>Session decorator with reproducibility logging</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">diagram</span></code></p></td>
+<td><p>Diagram generation (Mermaid, Graphviz)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">db</span></code></p></td>
+<td><p>Database access (SQLAlchemy, PostgreSQL)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">cv</span></code></p></td>
+<td><p>Computer vision (OpenCV, Pillow)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">dsp</span></code></p></td>
+<td><p>Digital signal processing (scipy, tensorpac)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">social</span></code></p></td>
+<td><p>Social media posting (socialia)</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="docutils literal notranslate"><span class="pre">tunnel</span></code></p></td>
+<td><p>SSH tunnel management (scitex-tunnel)</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="docutils literal notranslate"><span class="pre">all</span></code></p></td>
+<td><p>Everything above</p></td>
+</tr>
+</tbody>
+</table>
+<p>Example combinations:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Neuroscience analysis</span>
+pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[plt,stats,dsp,dataset]&quot;</span>
+
+<span class="c1"># Paper writing</span>
+pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[writer,scholar,plt]&quot;</span>
+
+<span class="c1"># AI agent development</span>
+pip<span class="w"> </span>install<span class="w"> </span><span class="s2">&quot;scitex[ai,browser,capture]&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="development-install">
+<h2>Development Install<a class="headerlink" href="#development-install" title="Link to this heading"></a></h2>
+<p>Clone the repository and install in editable mode with development tools:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git<span class="w"> </span>clone<span class="w"> </span>https://github.com/ywatanabe1989/scitex-python.git
+<span class="nb">cd</span><span class="w"> </span>scitex-python
+pip<span class="w"> </span>install<span class="w"> </span>-e<span class="w"> </span><span class="s2">&quot;.[dev]&quot;</span>
+</pre></div>
+</div>
+<p>The <code class="docutils literal notranslate"><span class="pre">dev</span></code> extra includes pytest, ruff, mypy, Sphinx, and build tools.</p>
+<section id="using-uv-recommended">
+<h3>Using uv (recommended)<a class="headerlink" href="#using-uv-recommended" title="Link to this heading"></a></h3>
+<p><a class="reference external" href="https://docs.astral.sh/uv/">uv</a> resolves and installs dependencies
+in parallel from a Rust resolver — roughly 10–30× faster than pip on
+<code class="docutils literal notranslate"><span class="pre">scitex[all]</span></code> (3 min vs. 30–90 min). Install it once with
+<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">uv</span></code> (or the standalone shell installer), then prefix
+every install command on this page with <code class="docutils literal notranslate"><span class="pre">uv</span></code>:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>uv<span class="w"> </span>pip<span class="w"> </span>install<span class="w"> </span>-e<span class="w"> </span><span class="s2">&quot;.[dev]&quot;</span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="verifying-the-installation">
+<h2>Verifying the Installation<a class="headerlink" href="#verifying-the-installation" title="Link to this heading"></a></h2>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">stx</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>To check which optional modules are available:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">stx</span><span class="o">.</span><span class="n">usage</span><span class="o">.</span><span class="n">list</span><span class="p">()</span>
+</pre></div>
+</div>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/src/scitex/_sphinx_html/source/mcp.html b/src/scitex/_sphinx_html/source/mcp.html
new file mode 100644
index 000000000..acdfe9c15
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/mcp.html
@@ -0,0 +1,832 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>MCP Server &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#classification">Classification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#metrics">Metrics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#visualization">Visualization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#other">Other</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/nn.html">NN Module (<code class="docutils literal notranslate"><span class="pre">stx.nn</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#signal-processing-layers">Signal Processing Layers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#channel-manipulation">Channel Manipulation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#attention-shape">Attention &amp; Shape</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#architectures">Architectures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/nn.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/torch.html">torch Module (<code class="docutils literal notranslate"><span class="pre">stx.torch</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/cv.html">cv Module (<code class="docutils literal notranslate"><span class="pre">stx.cv</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/benchmark.html">benchmark Module (<code class="docutils literal notranslate"><span class="pre">stx.benchmark</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/pd.html">PD Module (<code class="docutils literal notranslate"><span class="pre">stx.pd</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/pd.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/db.html">db Module (<code class="docutils literal notranslate"><span class="pre">stx.db</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dataset.html">dataset Module (<code class="docutils literal notranslate"><span class="pre">stx.dataset</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/schema.html">schema Module (<code class="docutils literal notranslate"><span class="pre">stx.schema</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/app.html">app Module (<code class="docutils literal notranslate"><span class="pre">stx.app</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/capture.html">capture Module (<code class="docutils literal notranslate"><span class="pre">stx.capture</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audio.html">audio Module (<code class="docutils literal notranslate"><span class="pre">stx.audio</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/gen.html">Gen Module (<code class="docutils literal notranslate"><span class="pre">stx.gen</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/gen.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/template.html">Template Module (<code class="docutils literal notranslate"><span class="pre">stx.template</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#project-templates">Project Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#code-templates">Code Templates</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/sh.html">sh Module (<code class="docutils literal notranslate"><span class="pre">stx.sh</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/utils.html">utils Module (<code class="docutils literal notranslate"><span class="pre">stx.utils</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/web.html">web Module (<code class="docutils literal notranslate"><span class="pre">stx.web</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/msword.html">msword Module (<code class="docutils literal notranslate"><span class="pre">stx.msword</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/tex.html">tex Module (<code class="docutils literal notranslate"><span class="pre">stx.tex</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/bridge.html">bridge Module (<code class="docutils literal notranslate"><span class="pre">stx.bridge</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/compat.html">compat Module (<code class="docutils literal notranslate"><span class="pre">stx.compat</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/gists.html">gists Module (<code class="docutils literal notranslate"><span class="pre">stx.gists</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/media.html">media Module (<code class="docutils literal notranslate"><span class="pre">stx.media</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/security.html">security Module (<code class="docutils literal notranslate"><span class="pre">stx.security</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ui.html">ui Module (<code class="docutils literal notranslate"><span class="pre">stx.ui</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">SciTeX</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">MCP Server</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/mcp.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="mcp-server">
+<h1>MCP Server<a class="headerlink" href="#mcp-server" title="Link to this heading"></a></h1>
+<section id="what-is-mcp">
+<h2>What is MCP?<a class="headerlink" href="#what-is-mcp" title="Link to this heading"></a></h2>
+<p>The <a class="reference external" href="https://modelcontextprotocol.io/">Model Context Protocol</a> (MCP) is
+an open protocol that lets AI agents call external tools through a
+standardized interface. Instead of generating code and hoping it works, an
+agent can invoke a well-defined tool and receive structured results.</p>
+<p>SciTeX implements an MCP server that exposes 120+ tools covering the full
+research workflow. Any MCP-compatible client – Claude Code, Cursor, or
+custom agents – can use these tools to conduct literature searches, run
+statistics, create figures, and compile manuscripts.</p>
+</section>
+<section id="setup">
+<h2>Setup<a class="headerlink" href="#setup" title="Link to this heading"></a></h2>
+<p>Add the following to <code class="docutils literal notranslate"><span class="pre">.mcp.json</span></code> in your project root:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span>
+<span class="w">  </span><span class="nt">&quot;mcpServers&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span>
+<span class="w">    </span><span class="nt">&quot;scitex&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span>
+<span class="w">      </span><span class="nt">&quot;command&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;scitex&quot;</span><span class="p">,</span>
+<span class="w">      </span><span class="nt">&quot;args&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span><span class="s2">&quot;mcp&quot;</span><span class="p">,</span><span class="w"> </span><span class="s2">&quot;start&quot;</span><span class="p">],</span>
+<span class="w">      </span><span class="nt">&quot;env&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span>
+<span class="w">        </span><span class="nt">&quot;SCITEX_ENV_SRC&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;${SCITEX_ENV_SRC}&quot;</span>
+<span class="w">      </span><span class="p">}</span>
+<span class="w">    </span><span class="p">}</span>
+<span class="w">  </span><span class="p">}</span>
+<span class="p">}</span>
+</pre></div>
+</div>
+<p>Then set the environment source file in your shell profile:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Local machine</span>
+<span class="nb">export</span><span class="w"> </span><span class="nv">SCITEX_ENV_SRC</span><span class="o">=</span>~/.scitex/scitex/local.src
+
+<span class="c1"># Remote server</span>
+<span class="nb">export</span><span class="w"> </span><span class="nv">SCITEX_ENV_SRC</span><span class="o">=</span>~/.scitex/scitex/remote.src
+</pre></div>
+</div>
+<p>Generate a template <code class="docutils literal notranslate"><span class="pre">.src</span></code> file:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>env-template<span class="w"> </span>-o<span class="w"> </span>~/.scitex/scitex/local.src
+</pre></div>
+</div>
+<p>Or install the MCP server globally:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scitex<span class="w"> </span>mcp<span class="w"> </span>installation
+</pre></div>
+</div>
+</section>
+<section id="tool-categories">
+<h2>Tool Categories<a class="headerlink" href="#tool-categories" title="Link to this heading"></a></h2>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 20.0%" />
+<col style="width: 10.0%" />
+<col style="width: 70.0%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Category</p></th>
+<th class="head"><p>Tools</p></th>
+<th class="head"><p>Description</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p>writer</p></td>
+<td><p>28</p></td>
+<td><p>LaTeX manuscript compilation</p></td>
+</tr>
+<tr class="row-odd"><td><p>scholar</p></td>
+<td><p>23</p></td>
+<td><p>PDF download, metadata enrichment</p></td>
+</tr>
+<tr class="row-even"><td><p>capture</p></td>
+<td><p>12</p></td>
+<td><p>Screen monitoring and capture</p></td>
+</tr>
+<tr class="row-odd"><td><p>introspect</p></td>
+<td><p>12</p></td>
+<td><p>Python code introspection</p></td>
+</tr>
+<tr class="row-even"><td><p>audio</p></td>
+<td><p>10</p></td>
+<td><p>Text-to-speech, audio playback</p></td>
+</tr>
+<tr class="row-odd"><td><p>stats</p></td>
+<td><p>10</p></td>
+<td><p>Automated statistical testing</p></td>
+</tr>
+<tr class="row-even"><td><p>plt</p></td>
+<td><p>9</p></td>
+<td><p>Matplotlib figure creation</p></td>
+</tr>
+<tr class="row-odd"><td><p>diagram</p></td>
+<td><p>9</p></td>
+<td><p>Mermaid and Graphviz diagrams</p></td>
+</tr>
+<tr class="row-even"><td><p>dataset</p></td>
+<td><p>8</p></td>
+<td><p>Scientific dataset access</p></td>
+</tr>
+<tr class="row-odd"><td><p>social</p></td>
+<td><p>7</p></td>
+<td><p>Social media posting</p></td>
+</tr>
+<tr class="row-even"><td><p>canvas</p></td>
+<td><p>7</p></td>
+<td><p>Scientific figure canvas</p></td>
+</tr>
+<tr class="row-odd"><td><p>template</p></td>
+<td><p>6</p></td>
+<td><p>Project scaffolding</p></td>
+</tr>
+<tr class="row-even"><td><p>verify</p></td>
+<td><p>6</p></td>
+<td><p>Reproducibility verification</p></td>
+</tr>
+<tr class="row-odd"><td><p>dev</p></td>
+<td><p>6</p></td>
+<td><p>Ecosystem version management</p></td>
+</tr>
+<tr class="row-even"><td><p>ui</p></td>
+<td><p>5</p></td>
+<td><p>Notifications</p></td>
+</tr>
+<tr class="row-odd"><td><p>linter</p></td>
+<td><p>3</p></td>
+<td><p>Code pattern checking</p></td>
+</tr>
+</tbody>
+</table>
+<p>All tools accept JSON parameters and return structured results.</p>
+</section>
+<section id="example-workflow">
+<h2>Example Workflow<a class="headerlink" href="#example-workflow" title="Link to this heading"></a></h2>
+<p>A typical AI-driven research workflow chains tools across categories:</p>
+<ol class="arabic">
+<li><p><strong>Scholar</strong> – Search literature and download papers</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>scholar_search_papers(query=&quot;neural oscillations gamma band&quot;)
+scholar_fetch_papers(dois=[&quot;10.1038/s41586-024-...&quot;])
+</pre></div>
+</div>
+</li>
+<li><p><strong>Stats</strong> – Analyze experimental data</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>stats_recommend_tests(data=[[1.2, 3.4, ...], [2.1, 4.5, ...]])
+stats_run_test(test=&quot;mann_whitney_u&quot;, groups=[[...], [...]])
+</pre></div>
+</div>
+</li>
+<li><p><strong>Plt</strong> – Create publication-ready figures</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>plt_bar(data={&quot;Control&quot;: [1,2,3], &quot;Treatment&quot;: [4,5,6]},
+        ylabel=&quot;Response&quot;, title=&quot;Figure 1&quot;)
+</pre></div>
+</div>
+</li>
+<li><p><strong>Writer</strong> – Compile the manuscript</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>writer_compile_manuscript(project=&quot;my_paper&quot;)
+</pre></div>
+</div>
+</li>
+</ol>
+<p>The agent orchestrates these steps autonomously, passing outputs from one
+tool as inputs to the next.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>&#169; Copyright 2024-2026, Yusuke Watanabe.</p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
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+  </div>
+  <script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
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diff --git a/src/scitex/_sphinx_html/source/quickstart.html b/src/scitex/_sphinx_html/source/quickstart.html
new file mode 100644
index 000000000..ffe15cd17
--- /dev/null
+++ b/src/scitex/_sphinx_html/source/quickstart.html
@@ -0,0 +1,922 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" data-content_root="../">
+<head>
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Quickstart &mdash; SciTeX v0.0.0</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=b86133f3" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=9edc463e" />
+      <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+
+  
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=7026087e"></script>
+      <script src="../_static/doctools.js?v=fd6eb6e6"></script>
+      <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
+      <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+      <script src="../_static/copybutton.js?v=f281be69"></script>
+      <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+
+          
+          
+          <a href="../index.html" class="icon icon-home">
+            SciTeX
+          </a>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Module Overview</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../modules/session.html">Session Decorator (<code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#basic-usage">Basic Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#output-directory-structure">Output Directory Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#injected-parameters">Injected Parameters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#config-object">CONFIG Object</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#decorator-options">Decorator Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#best-practices">Best Practices</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/session.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/io.html">IO Module (<code class="docutils literal notranslate"><span class="pre">stx.io</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#supported-formats">Supported Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#figure-saving">Figure Saving</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#provenance-tracking">Provenance Tracking</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#other-functions">Other Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/io.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/config.html">Config Module (<code class="docutils literal notranslate"><span class="pre">stx.config</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#priority-resolution">Priority Resolution</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#yaml-configuration">YAML Configuration</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#path-management">Path Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#utility-functions">Utility Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/config.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/logging.html">Logging Module (<code class="docutils literal notranslate"><span class="pre">stx.logging</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#log-levels">Log Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#warning-categories">Warning Categories</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#exception-hierarchy">Exception Hierarchy</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#stream-redirection">Stream Redirection</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/logging.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/repro.html">Repro Module (<code class="docutils literal notranslate"><span class="pre">stx.repro</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#randomstatemanager">RandomStateManager</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/repro.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/clew.html">Clew Module (<code class="docutils literal notranslate"><span class="pre">stx.clew</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#how-it-works">How It Works</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-levels">Verification Levels</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#dependency-chains">Dependency Chains</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#verification-statuses">Verification Statuses</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#key-functions">Key Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/clew.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/stats.html">Stats Module (<code class="docutils literal notranslate"><span class="pre">stx.stats</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#available-tests">Available Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#seaborn-style-data-parameter">Seaborn-Style Data Parameter</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#test-recommendation">Test Recommendation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#output-formats">Output Formats</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#descriptive-statistics">Descriptive Statistics</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#multiple-comparison-correction">Multiple Comparison Correction</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#post-hoc-tests">Post-hoc Tests</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/stats.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/plt.html">PLT Module (<code class="docutils literal notranslate"><span class="pre">stx.plt</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#plot-types-47">Plot Types (47)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#mm-based-layout">MM-Based Layout</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#axis-helpers">Axis Helpers</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#figure-composition">Figure Composition</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#statistical-annotations">Statistical Annotations</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#reproducible-figures">Reproducible Figures</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#style-presets">Style Presets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/plt.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dsp.html">DSP Module (<code class="docutils literal notranslate"><span class="pre">stx.dsp</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#available-functions">Available Functions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/dsp.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/diagram.html">Diagram Module (<code class="docutils literal notranslate"><span class="pre">stx.diagram</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#yaml-specification">YAML Specification</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-shapes">Node Shapes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#node-emphasis">Node Emphasis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#diagram-types">Diagram Types</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#paper-modes">Paper Modes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#backends">Backends</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/diagram.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/canvas.html">canvas Module (<code class="docutils literal notranslate"><span class="pre">stx.canvas</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/scholar.html">Scholar Module (<code class="docutils literal notranslate"><span class="pre">stx.scholar</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#data-sources">Data Sources</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#paper-metadata">Paper Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#filtering-and-sorting">Filtering and Sorting</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#project-organization">Project Organization</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#storage-architecture">Storage Architecture</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/scholar.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/writer.html">Writer Module (<code class="docutils literal notranslate"><span class="pre">stx.writer</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#cli-usage">CLI Usage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#project-structure">Project Structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#key-classes">Key Classes</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#document-management">Document Management</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#writing-guidelines">Writing Guidelines</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#compilation-options">Compilation Options</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/writer.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/notebook.html">notebook Module (<code class="docutils literal notranslate"><span class="pre">stx.notebook</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/ai.html">AI Module (<code class="docutils literal notranslate"><span class="pre">stx.ai</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/ai.html#training">Training</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../modules/template.html#git-strategies">Git Strategies</a></li>
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+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/decorators.html">Decorators Module (<code class="docutils literal notranslate"><span class="pre">stx.decorators</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#type-conversion">Type Conversion</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#batch-processing">Batch Processing</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#caching">Caching</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#utilities">Utilities</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#auto-ordering">Auto-Ordering</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/decorators.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/introspect.html">Introspect Module (<code class="docutils literal notranslate"><span class="pre">stx.introspect</span></code>)</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#quick-reference">Quick Reference</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#ipython-style-shortcuts">IPython-Style Shortcuts</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#documentation">Documentation</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#type-analysis">Type Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#code-analysis">Code Analysis</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-tree">API Tree</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../modules/introspect.html#api-reference">API Reference</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/str.html">str Module (<code class="docutils literal notranslate"><span class="pre">stx.str</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/dict.html">dict Module (<code class="docutils literal notranslate"><span class="pre">stx.dict</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/path.html">path Module (<code class="docutils literal notranslate"><span class="pre">stx.path</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/os.html">os Module (<code class="docutils literal notranslate"><span class="pre">stx.os</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/git.html">git Module (<code class="docutils literal notranslate"><span class="pre">stx.git</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/parallel.html">parallel Module (<code class="docutils literal notranslate"><span class="pre">stx.parallel</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/linalg.html">linalg Module (<code class="docutils literal notranslate"><span class="pre">stx.linalg</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/datetime.html">datetime Module (<code class="docutils literal notranslate"><span class="pre">stx.datetime</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/types.html">types Module (<code class="docutils literal notranslate"><span class="pre">stx.types</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/rng.html">rng Module (<code class="docutils literal notranslate"><span class="pre">stx.rng</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/context.html">context Module (<code class="docutils literal notranslate"><span class="pre">stx.context</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/resource.html">resource Module (<code class="docutils literal notranslate"><span class="pre">stx.resource</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/etc.html">etc Module (<code class="docutils literal notranslate"><span class="pre">stx.etc</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/module.html">module Module (<code class="docutils literal notranslate"><span class="pre">stx.module</span></code>)</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../modules/dev.html">dev Module (<code class="docutils literal notranslate"><span class="pre">stx.dev</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/audit.html">audit Module (<code class="docutils literal notranslate"><span class="pre">stx.audit</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/events.html">events Module (<code class="docutils literal notranslate"><span class="pre">stx.events</span></code>)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../modules/project.html">project Module (<code class="docutils literal notranslate"><span class="pre">stx.project</span></code>)</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#requirements">Requirements</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#core-install">Core Install</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#recommended-install-everything">Recommended: Install Everything</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#per-module-extras">Per-Module Extras</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#development-install">Development Install</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../installation.html#using-uv-recommended">Using uv (recommended)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../installation.html#verifying-the-installation">Verifying the Installation</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../quickstart.html">Quick Start</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#three-interfaces">Three Interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#python-api">Python API</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#cli-commands">CLI Commands</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart.html#mcp-tools-120-tools-for-ai-agents">MCP Tools (120+ tools for AI agents)</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#complete-example">Complete Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../quickstart.html#next-steps">Next Steps</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../core_concepts.html">Core Concepts</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#research-workflow">Research Workflow</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#architecture">Architecture</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#the-session-model">The Session Model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#universal-i-o">Universal I/O</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#provenance-tracking-clew">Provenance Tracking (Clew)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#configuration">Configuration</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../core_concepts.html#best-practices">Best Practices</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../gallery.html">Plot Gallery</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#line-plots">Line Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#statistical-plots">Statistical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#distribution-plots">Distribution Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#categorical-plots">Categorical Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#scatter-plots">Scatter Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#heatmaps-and-grids">Heatmaps and Grids</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#area-plots">Area Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#special-plots">Special Plots</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../gallery.html#contour-and-vector-plots">Contour and Vector Plots</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.session.html">scitex.session API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.io.html">scitex.io API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.config.html">scitex.config API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig"><code class="docutils literal notranslate"><span class="pre">ScitexConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.get_nested"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.get_nested()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.config_path"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.config_path</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.raw"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.raw</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.flat"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.flat</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexConfig.print"><code class="docutils literal notranslate"><span class="pre">ScitexConfig.print()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_config"><code class="docutils literal notranslate"><span class="pre">get_config()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_yaml"><code class="docutils literal notranslate"><span class="pre">load_yaml()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths"><code class="docutils literal notranslate"><span class="pre">ScitexPaths</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.__init__"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.base"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.logs"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.logs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.capture"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.capture</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.rng"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.rng</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_screenshots"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_screenshots</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_sessions"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_sessions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.browser_persistent"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.browser_persistent</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.test_monitor"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.test_monitor</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.function_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.function_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.impact_factor_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.impact_factor_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.openathens_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.openathens_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_cache"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_cache</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.scholar_library"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.scholar_library</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.writer"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.writer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.resolve"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_dir"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_dir()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.ensure_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.ensure_all()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.ScitexPaths.list_all"><code class="docutils literal notranslate"><span class="pre">ScitexPaths.list_all()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_paths"><code class="docutils literal notranslate"><span class="pre">get_paths()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig"><code class="docutils literal notranslate"><span class="pre">PriorityConfig</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.SENSITIVE_EXPRESSIONS"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.SENSITIVE_EXPRESSIONS</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.__init__"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.get"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.get()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.resolve"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.resolve()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.print_resolutions"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.print_resolutions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.config.html#scitex.config.PriorityConfig.clear_log"><code class="docutils literal notranslate"><span class="pre">PriorityConfig.clear_log()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.get_scitex_dir"><code class="docutils literal notranslate"><span class="pre">get_scitex_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_dotenv"><code class="docutils literal notranslate"><span class="pre">load_dotenv()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.parse_src_file"><code class="docutils literal notranslate"><span class="pre">parse_src_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_env_from_path"><code class="docutils literal notranslate"><span class="pre">load_env_from_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.config.html#scitex.config.load_scitex_env"><code class="docutils literal notranslate"><span class="pre">load_scitex_env()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.logging.html">scitex.logging API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.getLogger"><code class="docutils literal notranslate"><span class="pre">getLogger()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.configure"><code class="docutils literal notranslate"><span class="pre">configure()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.set_level"><code class="docutils literal notranslate"><span class="pre">set_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_level"><code class="docutils literal notranslate"><span class="pre">get_level()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.enable_file_logging"><code class="docutils literal notranslate"><span class="pre">enable_file_logging()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.is_file_logging_enabled"><code class="docutils literal notranslate"><span class="pre">is_file_logging_enabled()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.get_log_path"><code class="docutils literal notranslate"><span class="pre">get_log_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee"><code class="docutils literal notranslate"><span class="pre">Tee</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.write"><code class="docutils literal notranslate"><span class="pre">Tee.write()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.flush"><code class="docutils literal notranslate"><span class="pre">Tee.flush()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.isatty"><code class="docutils literal notranslate"><span class="pre">Tee.isatty()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.fileno"><code class="docutils literal notranslate"><span class="pre">Tee.fileno()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.buffer"><code class="docutils literal notranslate"><span class="pre">Tee.buffer</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.Tee.close"><code class="docutils literal notranslate"><span class="pre">Tee.close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.tee"><code class="docutils literal notranslate"><span class="pre">tee()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.log_to_file"><code class="docutils literal notranslate"><span class="pre">log_to_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.UnitWarning"><code class="docutils literal notranslate"><span class="pre">UnitWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StyleWarning"><code class="docutils literal notranslate"><span class="pre">StyleWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXDeprecationWarning"><code class="docutils literal notranslate"><span class="pre">SciTeXDeprecationWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PerformanceWarning"><code class="docutils literal notranslate"><span class="pre">PerformanceWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataLossWarning"><code class="docutils literal notranslate"><span class="pre">DataLossWarning</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn"><code class="docutils literal notranslate"><span class="pre">warn()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.filterwarnings"><code class="docutils literal notranslate"><span class="pre">filterwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.resetwarnings"><code class="docutils literal notranslate"><span class="pre">resetwarnings()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_deprecated"><code class="docutils literal notranslate"><span class="pre">warn_deprecated()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_performance"><code class="docutils literal notranslate"><span class="pre">warn_performance()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.warn_data_loss"><code class="docutils literal notranslate"><span class="pre">warn_data_loss()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError"><code class="docutils literal notranslate"><span class="pre">SciTeXError</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SciTeXError.__init__"><code class="docutils literal notranslate"><span class="pre">SciTeXError.__init__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigurationError"><code class="docutils literal notranslate"><span class="pre">ConfigurationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigFileNotFoundError"><code class="docutils literal notranslate"><span class="pre">ConfigFileNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ConfigKeyError"><code class="docutils literal notranslate"><span class="pre">ConfigKeyError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.IOError"><code class="docutils literal notranslate"><span class="pre">IOError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FileFormatError"><code class="docutils literal notranslate"><span class="pre">FileFormatError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SaveError"><code class="docutils literal notranslate"><span class="pre">SaveError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.LoadError"><code class="docutils literal notranslate"><span class="pre">LoadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ScholarError"><code class="docutils literal notranslate"><span class="pre">ScholarError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.SearchError"><code class="docutils literal notranslate"><span class="pre">SearchError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.EnrichmentError"><code class="docutils literal notranslate"><span class="pre">EnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFDownloadError"><code class="docutils literal notranslate"><span class="pre">PDFDownloadError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DOIResolutionError"><code class="docutils literal notranslate"><span class="pre">DOIResolutionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PDFExtractionError"><code class="docutils literal notranslate"><span class="pre">PDFExtractionError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.BibTeXEnrichmentError"><code class="docutils literal notranslate"><span class="pre">BibTeXEnrichmentError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TranslatorError"><code class="docutils literal notranslate"><span class="pre">TranslatorError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AuthenticationError"><code class="docutils literal notranslate"><span class="pre">AuthenticationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PlottingError"><code class="docutils literal notranslate"><span class="pre">PlottingError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.FigureNotFoundError"><code class="docutils literal notranslate"><span class="pre">FigureNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.AxisError"><code class="docutils literal notranslate"><span class="pre">AxisError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DataError"><code class="docutils literal notranslate"><span class="pre">DataError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ShapeError"><code class="docutils literal notranslate"><span class="pre">ShapeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.DTypeError"><code class="docutils literal notranslate"><span class="pre">DTypeError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathError"><code class="docutils literal notranslate"><span class="pre">PathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.InvalidPathError"><code class="docutils literal notranslate"><span class="pre">InvalidPathError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.PathNotFoundError"><code class="docutils literal notranslate"><span class="pre">PathNotFoundError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateError"><code class="docutils literal notranslate"><span class="pre">TemplateError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TemplateViolationError"><code class="docutils literal notranslate"><span class="pre">TemplateViolationError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.NNError"><code class="docutils literal notranslate"><span class="pre">NNError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.ModelError"><code class="docutils literal notranslate"><span class="pre">ModelError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.StatsError"><code class="docutils literal notranslate"><span class="pre">StatsError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.TestError"><code class="docutils literal notranslate"><span class="pre">TestError</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_path"><code class="docutils literal notranslate"><span class="pre">check_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_file_exists"><code class="docutils literal notranslate"><span class="pre">check_file_exists()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.logging.html#scitex.logging.check_shape_compatibility"><code class="docutils literal notranslate"><span class="pre">check_shape_compatibility()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.repro.html">scitex.repro API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_ID"><code class="docutils literal notranslate"><span class="pre">gen_ID()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_id"><code class="docutils literal notranslate"><span class="pre">gen_id()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.gen_timestamp"><code class="docutils literal notranslate"><span class="pre">gen_timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.timestamp"><code class="docutils literal notranslate"><span class="pre">timestamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.hash_array"><code class="docutils literal notranslate"><span class="pre">hash_array()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager"><code class="docutils literal notranslate"><span class="pre">RandomStateManager</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__init__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_np_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_np_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.__call__"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.__call__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.verify"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.verify()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.checkpoint"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.checkpoint()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.restore"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.restore()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.temporary_seed"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.temporary_seed()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_sklearn_random_state"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_sklearn_random_state()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_torch_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_torch_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.get_generator"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.get_generator()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.RandomStateManager.clear_cache"><code class="docutils literal notranslate"><span class="pre">RandomStateManager.clear_cache()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.reset"><code class="docutils literal notranslate"><span class="pre">reset()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.repro.html#scitex.repro.fix_seeds"><code class="docutils literal notranslate"><span class="pre">fix_seeds()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.clew.html">scitex.clew API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.status"><code class="docutils literal notranslate"><span class="pre">status()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.chain"><code class="docutils literal notranslate"><span class="pre">chain()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.dag"><code class="docutils literal notranslate"><span class="pre">dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun"><code class="docutils literal notranslate"><span class="pre">rerun()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_dag"><code class="docutils literal notranslate"><span class="pre">rerun_dag()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.rerun_claims"><code class="docutils literal notranslate"><span class="pre">rerun_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_runs"><code class="docutils literal notranslate"><span class="pre">list_runs()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stats"><code class="docutils literal notranslate"><span class="pre">stats()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.add_claim"><code class="docutils literal notranslate"><span class="pre">add_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_claims"><code class="docutils literal notranslate"><span class="pre">list_claims()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.verify_claim"><code class="docutils literal notranslate"><span class="pre">verify_claim()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.export_claims_json"><code class="docutils literal notranslate"><span class="pre">export_claims_json()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.register_intermediate"><code class="docutils literal notranslate"><span class="pre">register_intermediate()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.stamp"><code class="docutils literal notranslate"><span class="pre">stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.list_stamps"><code class="docutils literal notranslate"><span class="pre">list_stamps()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.check_stamp"><code class="docutils literal notranslate"><span class="pre">check_stamp()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_file"><code class="docutils literal notranslate"><span class="pre">hash_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.hash_directory"><code class="docutils literal notranslate"><span class="pre">hash_directory()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.mermaid"><code class="docutils literal notranslate"><span class="pre">mermaid()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.init_examples"><code class="docutils literal notranslate"><span class="pre">init_examples()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_start"><code class="docutils literal notranslate"><span class="pre">on_session_start()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.clew.html#scitex.clew.on_session_close"><code class="docutils literal notranslate"><span class="pre">on_session_close()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.stats.html">scitex.stats API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.plt.html">scitex.plt API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dsp.html">scitex.dsp API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.diagram.html">scitex.diagram API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.scholar.html">scitex.scholar API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.writer.html">scitex.writer</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.usage"><code class="docutils literal notranslate"><span class="pre">usage()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer"><code class="docutils literal notranslate"><span class="pre">Writer</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.__init__"><code class="docutils literal notranslate"><span class="pre">Writer.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_manuscript"><code class="docutils literal notranslate"><span class="pre">Writer.compile_manuscript()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_supplementary"><code class="docutils literal notranslate"><span class="pre">Writer.compile_supplementary()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.compile_revision"><code class="docutils literal notranslate"><span class="pre">Writer.compile_revision()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.watch"><code class="docutils literal notranslate"><span class="pre">Writer.watch()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.get_pdf"><code class="docutils literal notranslate"><span class="pre">Writer.get_pdf()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.Writer.delete"><code class="docutils literal notranslate"><span class="pre">Writer.delete()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult"><code class="docutils literal notranslate"><span class="pre">CompilationResult</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.success"><code class="docutils literal notranslate"><span class="pre">CompilationResult.success</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.exit_code"><code class="docutils literal notranslate"><span class="pre">CompilationResult.exit_code</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stdout"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stdout</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.stderr"><code class="docutils literal notranslate"><span class="pre">CompilationResult.stderr</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.output_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.output_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.diff_pdf"><code class="docutils literal notranslate"><span class="pre">CompilationResult.diff_pdf</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.log_file"><code class="docutils literal notranslate"><span class="pre">CompilationResult.log_file</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.duration"><code class="docutils literal notranslate"><span class="pre">CompilationResult.duration</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.errors"><code class="docutils literal notranslate"><span class="pre">CompilationResult.errors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.warnings"><code class="docutils literal notranslate"><span class="pre">CompilationResult.warnings</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.CompilationResult.__str__"><code class="docutils literal notranslate"><span class="pre">CompilationResult.__str__()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.git_root"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.contents"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.base"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.readme"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.archive"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.ManuscriptTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">ManuscriptTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.git_root"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.contents"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.base"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.supplementary_diff"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.supplementary_diff</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.readme"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.archive"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.SupplementaryTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">SupplementaryTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree"><code class="docutils literal notranslate"><span class="pre">RevisionTree</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.git_root"><code class="docutils literal notranslate"><span class="pre">RevisionTree.git_root</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.contents"><code class="docutils literal notranslate"><span class="pre">RevisionTree.contents</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.base"><code class="docutils literal notranslate"><span class="pre">RevisionTree.base</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.revision"><code class="docutils literal notranslate"><span class="pre">RevisionTree.revision</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.readme"><code class="docutils literal notranslate"><span class="pre">RevisionTree.readme</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.archive"><code class="docutils literal notranslate"><span class="pre">RevisionTree.archive</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.docs"><code class="docutils literal notranslate"><span class="pre">RevisionTree.docs</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.__post_init__"><code class="docutils literal notranslate"><span class="pre">RevisionTree.__post_init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="../api/scitex.writer.html#scitex.writer.RevisionTree.verify_structure"><code class="docutils literal notranslate"><span class="pre">RevisionTree.verify_structure()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.linter.html">scitex.linter</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.ai.html">scitex.ai API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.nn.html">scitex.nn API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.template.html">scitex.template API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.decorators.html">scitex.decorators API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.introspect.html">scitex.introspect API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.pd.html">scitex.pd API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.gen.html">scitex.gen API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.db.html">scitex.db API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.dict.html">scitex.dict API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.str.html">scitex.str API Reference</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.path.html">scitex.path API Reference</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.clean"><code class="docutils literal notranslate"><span class="pre">clean()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.create_relative_symlink"><code class="docutils literal notranslate"><span class="pre">create_relative_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_dir"><code class="docutils literal notranslate"><span class="pre">find_dir()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_file"><code class="docutils literal notranslate"><span class="pre">find_file()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_git_root"><code class="docutils literal notranslate"><span class="pre">find_git_root()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.find_latest"><code class="docutils literal notranslate"><span class="pre">find_latest()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.fix_broken_symlinks"><code class="docutils literal notranslate"><span class="pre">fix_broken_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_data_path_from_a_package"><code class="docutils literal notranslate"><span class="pre">get_data_path_from_a_package()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_spath"><code class="docutils literal notranslate"><span class="pre">get_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.get_this_path"><code class="docutils literal notranslate"><span class="pre">get_this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.getsize"><code class="docutils literal notranslate"><span class="pre">getsize()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.increment_version"><code class="docutils literal notranslate"><span class="pre">increment_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.is_symlink"><code class="docutils literal notranslate"><span class="pre">is_symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.list_symlinks"><code class="docutils literal notranslate"><span class="pre">list_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.mk_spath"><code class="docutils literal notranslate"><span class="pre">mk_spath()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.readlink"><code class="docutils literal notranslate"><span class="pre">readlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.resolve_symlinks"><code class="docutils literal notranslate"><span class="pre">resolve_symlinks()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.split"><code class="docutils literal notranslate"><span class="pre">split()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.symlink"><code class="docutils literal notranslate"><span class="pre">symlink()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.this_path"><code class="docutils literal notranslate"><span class="pre">this_path()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="../api/scitex.path.html#scitex.path.unlink_symlink"><code class="docutils literal notranslate"><span class="pre">unlink_symlink()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../api/scitex.social.html">scitex.social API Reference</a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
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+      <li class="breadcrumb-item active">Quickstart</li>
+      <li class="wy-breadcrumbs-aside">
+              <a href="https://github.com/ywatanabe1989/scitex-python/blob/develop/docs/sphinx/source/quickstart.rst" class="fa fa-github"> Edit on GitHub</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="quickstart">
+<h1>Quickstart<a class="headerlink" href="#quickstart" title="Link to this heading"></a></h1>
+<p>This guide covers the most common SciTeX workflows with working code
+examples. For design rationale, see <a class="reference internal" href="concepts.html"><span class="doc">Core Concepts</span></a>.</p>
+<section id="session-decorator">
+<h2>Session Decorator<a class="headerlink" href="#session-decorator" title="Link to this heading"></a></h2>
+<p>The <code class="docutils literal notranslate"><span class="pre">&#64;stx.session</span></code> decorator is the recommended entry point for any
+SciTeX script. It converts your function into a self-contained,
+reproducible experiment with automatic CLI generation, config loading,
+logging, and organized output directories.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="nd">@stx</span><span class="o">.</span><span class="n">session</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">main</span><span class="p">(</span>
+    <span class="n">n_samples</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span>
+    <span class="n">CONFIG</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>
+    <span class="n">plt</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>
+    <span class="n">logger</span><span class="o">=</span><span class="n">stx</span><span class="o">.</span><span class="n">session</span><span class="o">.</span><span class="n">INJECTED</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Generate sample data and plot.&quot;&quot;&quot;</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span><span class="p">,</span> <span class="n">n_samples</span><span class="p">)</span>
+    <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+
+    <span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+    <span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span>
+    <span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Time&quot;</span><span class="p">,</span> <span class="s2">&quot;Amplitude&quot;</span><span class="p">,</span> <span class="s2">&quot;Sine Wave&quot;</span><span class="p">)</span>
+    <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;sine.png&quot;</span><span class="p">)</span>  <span class="c1"># Saves sine.png + sine.csv</span>
+    <span class="k">return</span> <span class="mi">0</span>
+
+<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
+    <span class="n">main</span><span class="p">()</span>
+</pre></div>
+</div>
+<p>Run from the command line – arguments are generated automatically from
+the function signature:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python<span class="w"> </span>script.py<span class="w"> </span>--n-samples<span class="w"> </span><span class="m">200</span>
+</pre></div>
+</div>
+<p>Parameters marked with <code class="docutils literal notranslate"><span class="pre">stx.session.INJECTED</span></code> are provided by the
+session runtime. You never pass them yourself:</p>
+<ul class="simple">
+<li><p><strong>CONFIG</strong> – aggregated YAML parameters from <code class="docutils literal notranslate"><span class="pre">./config/*.yaml</span></code></p></li>
+<li><p><strong>plt</strong> – matplotlib wrapped by figrecipe</p></li>
+<li><p><strong>logger</strong> – colored, file-backed logger</p></li>
+<li><p><strong>COLORS</strong> – publication color palette</p></li>
+<li><p><strong>rngg</strong> – seeded random number generator</p></li>
+</ul>
+<p>Output is organized into a timestamped directory:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>script_out/FINISHED_SUCCESS/2026-03-18_14-30-00_AbC1/
++-- sine.png               # Figure with embedded metadata
++-- sine.csv               # Auto-exported plot data
++-- CONFIGS/CONFIG.yaml    # Reproducible parameters
++-- logs/stdout.log        # Standard output
++-- logs/stderr.log        # Standard error
+</pre></div>
+</div>
+</section>
+<section id="unified-file-i-o">
+<h2>Unified File I/O<a class="headerlink" href="#unified-file-i-o" title="Link to this heading"></a></h2>
+<p><code class="docutils literal notranslate"><span class="pre">stx.io.save</span></code> and <code class="docutils literal notranslate"><span class="pre">stx.io.load</span></code> handle 30+ formats through a single
+interface. The format is inferred from the file extension.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+
+<span class="c1"># DataFrame -- CSV</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">({</span><span class="s2">&quot;x&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">],</span> <span class="s2">&quot;y&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">,</span> <span class="mi">6</span><span class="p">]})</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+<span class="n">df</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;data.csv&quot;</span><span class="p">)</span>
+
+<span class="c1"># NumPy array -- NPY</span>
+<span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">100</span><span class="p">,</span> <span class="mi">50</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="s2">&quot;array.npy&quot;</span><span class="p">)</span>
+<span class="n">arr</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;array.npy&quot;</span><span class="p">)</span>
+
+<span class="c1"># Figure -- PNG (also generates CSV of plotted data)</span>
+<span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">([</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">])</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;plot.png&quot;</span><span class="p">)</span>  <span class="c1"># Creates plot.png AND plot.csv</span>
+
+<span class="c1"># Dictionary -- YAML</span>
+<span class="n">params</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;learning_rate&quot;</span><span class="p">:</span> <span class="mf">0.001</span><span class="p">,</span> <span class="s2">&quot;epochs&quot;</span><span class="p">:</span> <span class="mi">100</span><span class="p">}</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">params</span><span class="p">,</span> <span class="s2">&quot;params.yaml&quot;</span><span class="p">)</span>
+<span class="n">params</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;params.yaml&quot;</span><span class="p">)</span>
+
+<span class="c1"># Dictionary -- JSON</span>
+<span class="n">metadata</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;subject&quot;</span><span class="p">:</span> <span class="s2">&quot;S01&quot;</span><span class="p">,</span> <span class="s2">&quot;task&quot;</span><span class="p">:</span> <span class="s2">&quot;rest&quot;</span><span class="p">}</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">metadata</span><span class="p">,</span> <span class="s2">&quot;meta.json&quot;</span><span class="p">)</span>
+<span class="n">metadata</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;meta.json&quot;</span><span class="p">)</span>
+
+<span class="c1"># Arbitrary object -- Pickle</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">({</span><span class="s2">&quot;complex&quot;</span><span class="p">:</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">]},</span> <span class="s2">&quot;data.pkl&quot;</span><span class="p">)</span>
+<span class="n">obj</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;data.pkl&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>When saving a matplotlib figure, SciTeX automatically exports the
+underlying data as a CSV file alongside the image. This ensures every
+figure in a paper can be independently verified and reproduced.</p>
+</section>
+<section id="statistical-analysis">
+<h2>Statistical Analysis<a class="headerlink" href="#statistical-analysis" title="Link to this heading"></a></h2>
+<p>SciTeX wraps 23 statistical tests with a consistent interface that
+includes effect sizes, confidence intervals, and power analysis.</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="n">group1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">30</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span>
+<span class="n">group2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">30</span><span class="p">)</span>
+
+<span class="c1"># Run a t-test with full reporting</span>
+<span class="n">result</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">run_test</span><span class="p">(</span>
+    <span class="s2">&quot;ttest_ind&quot;</span><span class="p">,</span> <span class="n">group1</span><span class="p">,</span> <span class="n">group2</span><span class="p">,</span> <span class="n">return_as</span><span class="o">=</span><span class="s2">&quot;dataframe&quot;</span>
+<span class="p">)</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
+<span class="c1"># Columns: test, statistic, p_value, effect_size, ci_lower, ci_upper, power</span>
+</pre></div>
+</div>
+<p>Not sure which test to use? Let SciTeX recommend one:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">data</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;group_a&quot;</span><span class="p">:</span> <span class="n">group1</span><span class="p">,</span> <span class="s2">&quot;group_b&quot;</span><span class="p">:</span> <span class="n">group2</span><span class="p">}</span>
+<span class="n">recommendations</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">recommend_tests</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">recommendations</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>Additional utilities:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># Multiple comparison correction</span>
+<span class="n">corrected</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">correct_pvalues</span><span class="p">([</span><span class="mf">0.01</span><span class="p">,</span> <span class="mf">0.04</span><span class="p">,</span> <span class="mf">0.06</span><span class="p">],</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;bonferroni&quot;</span><span class="p">)</span>
+
+<span class="c1"># Effect size calculation</span>
+<span class="n">d</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">effect_size</span><span class="p">(</span><span class="n">group1</span><span class="p">,</span> <span class="n">group2</span><span class="p">,</span> <span class="n">test</span><span class="o">=</span><span class="s2">&quot;cohens_d&quot;</span><span class="p">)</span>
+
+<span class="c1"># Format results for publication</span>
+<span class="n">formatted</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">format_results</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
+<span class="c1"># &quot;t(58) = 2.34, p = .021, d = 0.60&quot;</span>
+</pre></div>
+</div>
+</section>
+<section id="publication-ready-figures">
+<h2>Publication-Ready Figures<a class="headerlink" href="#publication-ready-figures" title="Link to this heading"></a></h2>
+<p>SciTeX delegates to <a class="reference external" href="https://github.com/ywatanabe1989/figrecipe">figrecipe</a>
+for publication-quality matplotlib figures with a consistent API.</p>
+<p><strong>Basic line plot</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">10</span><span class="p">,</span> <span class="mi">200</span><span class="p">)</span>
+
+<span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">))</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Time (s)&quot;</span><span class="p">,</span> <span class="s2">&quot;Amplitude&quot;</span><span class="p">,</span> <span class="s2">&quot;Sine Wave&quot;</span><span class="p">)</span>
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;line.png&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><strong>Multi-panel figure</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="n">fig</span><span class="p">,</span> <span class="n">axes</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">)</span>
+
+<span class="c1"># Panel A: line plot</span>
+<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">10</span><span class="p">,</span> <span class="mi">200</span><span class="p">)</span>
+<span class="n">axes</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">plot_line</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">))</span>
+<span class="n">axes</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Time&quot;</span><span class="p">,</span> <span class="s2">&quot;Value&quot;</span><span class="p">,</span> <span class="s2">&quot;Line&quot;</span><span class="p">)</span>
+
+<span class="c1"># Panel B: violin plot</span>
+<span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">50</span><span class="p">)</span> <span class="o">+</span> <span class="n">i</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">3</span><span class="p">)]</span>
+<span class="n">axes</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">stx_violin</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="n">axes</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Group&quot;</span><span class="p">,</span> <span class="s2">&quot;Value&quot;</span><span class="p">,</span> <span class="s2">&quot;Violin&quot;</span><span class="p">)</span>
+
+<span class="c1"># Panel C: heatmap</span>
+<span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">10</span><span class="p">,</span> <span class="mi">10</span><span class="p">)</span>
+<span class="n">axes</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">stx_heatmap</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+<span class="n">axes</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;X&quot;</span><span class="p">,</span> <span class="s2">&quot;Y&quot;</span><span class="p">,</span> <span class="s2">&quot;Heatmap&quot;</span><span class="p">)</span>
+
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;panels.png&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+<p><strong>Statistical visualization</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+
+<span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">100</span><span class="p">,</span> <span class="mi">50</span><span class="p">)</span>
+
+<span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">stx_mean_std</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+<span class="n">ax</span><span class="o">.</span><span class="n">set_xyt</span><span class="p">(</span><span class="s2">&quot;Time&quot;</span><span class="p">,</span> <span class="s2">&quot;Value&quot;</span><span class="p">,</span> <span class="s2">&quot;Mean +/- SD&quot;</span><span class="p">)</span>
+
+<span class="n">stx</span><span class="o">.</span><span class="n">io</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">fig</span><span class="p">,</span> <span class="s2">&quot;stats_plot.png&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="literature-management">
+<h2>Literature Management<a class="headerlink" href="#literature-management" title="Link to this heading"></a></h2>
+<p>The scholar module handles paper discovery, PDF downloads, and BibTeX
+enrichment.</p>
+<p><strong>CLI usage</strong></p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Enrich a BibTeX file with missing metadata (DOIs, abstracts)</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>bibtex<span class="w"> </span>refs.bib
+
+<span class="c1"># Fetch a paper by DOI</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>fetch<span class="w"> </span><span class="s2">&quot;10.1038/s41586-024-07487-w&quot;</span>
+
+<span class="c1"># Search for papers</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>search<span class="w"> </span><span class="s2">&quot;deep learning EEG&quot;</span><span class="w"> </span>--limit<span class="w"> </span><span class="m">20</span>
+</pre></div>
+</div>
+<p><strong>Python API</strong></p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">scitex</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">stx</span>
+
+<span class="c1"># Search for papers</span>
+<span class="n">results</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">scholar</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s2">&quot;transformer attention mechanism&quot;</span><span class="p">,</span> <span class="n">limit</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
+
+<span class="c1"># Parse and enrich a BibTeX file</span>
+<span class="n">entries</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">scholar</span><span class="o">.</span><span class="n">parse_bibtex</span><span class="p">(</span><span class="s2">&quot;refs.bib&quot;</span><span class="p">)</span>
+<span class="n">enriched</span> <span class="o">=</span> <span class="n">stx</span><span class="o">.</span><span class="n">scholar</span><span class="o">.</span><span class="n">enrich_bibtex</span><span class="p">(</span><span class="s2">&quot;refs.bib&quot;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+<section id="cli-usage">
+<h2>CLI Usage<a class="headerlink" href="#cli-usage" title="Link to this heading"></a></h2>
+<p>SciTeX provides a unified CLI that mirrors the Python module structure.</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Show all available commands</span>
+scitex<span class="w"> </span>--help-recursive
+
+<span class="c1"># Statistics</span>
+scitex<span class="w"> </span>stats<span class="w"> </span>recommend<span class="w">             </span><span class="c1"># Suggest tests for your data</span>
+scitex<span class="w"> </span>stats<span class="w"> </span>run<span class="w"> </span>ttest_ind<span class="w">         </span><span class="c1"># Run a specific test</span>
+
+<span class="c1"># Scholar / Literature</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>fetch<span class="w"> </span><span class="s2">&quot;10.1038/...&quot;</span><span class="w"> </span><span class="c1"># Download paper by DOI</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>bibtex<span class="w"> </span>refs.bib<span class="w">     </span><span class="c1"># Enrich BibTeX metadata</span>
+scitex<span class="w"> </span>scholar<span class="w"> </span>search<span class="w"> </span><span class="s2">&quot;query&quot;</span><span class="w">      </span><span class="c1"># Search for papers</span>
+
+<span class="c1"># Figures and diagrams</span>
+scitex<span class="w"> </span>plt<span class="w"> </span>info<span class="w">                    </span><span class="c1"># Show available plot types</span>
+
+<span class="c1"># Utilities</span>
+scitex<span class="w"> </span>audio<span class="w"> </span>speak<span class="w"> </span><span class="s2">&quot;Analysis complete&quot;</span><span class="w">  </span><span class="c1"># Text-to-speech notification</span>
+scitex<span class="w"> </span>capture<span class="w"> </span>snap<span class="w">                     </span><span class="c1"># Take a screenshot</span>
+
+<span class="c1"># Introspection</span>
+scitex<span class="w"> </span>introspect<span class="w"> </span>api<span class="w"> </span>scitex.stats<span class="w">      </span><span class="c1"># List APIs for a module</span>
+scitex<span class="w"> </span>list-python-apis<span class="w">                 </span><span class="c1"># List all Python APIs</span>
+scitex<span class="w"> </span>mcp<span class="w"> </span>list-tools<span class="w">                   </span><span class="c1"># List all MCP tools</span>
+</pre></div>
+</div>
+<p>Every CLI command corresponds to a Python function and an MCP tool.
+See <a class="reference internal" href="concepts.html"><span class="doc">Core Concepts</span></a> for details on this three-interface design.</p>
+</section>
+</section>
+
+
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